HHsearch alignment for GI: 254780163 and conserved domain: PRK12727
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.56 E-value=5.6e-05 Score=54.92 Aligned_cols=109 Identities=26% Similarity=0.358 Sum_probs=65.2
Q ss_pred CCCEEEEECCCCHHHHHHHHHHH------HHC-CCCEEEEEH---HHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHH-
Q ss_conf 74068861432003889999987------304-773377206---8861246530110478000256444310035551-
Q gi|254780163|r 506 PIGCYVFSGPTGVGKTEISKQLA------FAL-GVQLLRFDM---SEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQ- 574 (798)
Q Consensus 506 P~g~flf~GptGvGKTelak~la------~~~-~~~lir~dm---sey~e~~~vs~LiGappGYvG~~egg~Lte~vr~- 574 (798)
T Consensus 347 ~gGv~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRiga~eQL~~y~~ilgvpv-~~~~~~-~~l~~~l~~l 424 (557)
T PRK12727 347 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAV-HEADSA-ESLLDLLERL 424 (557)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEE-EEECCH-HHHHHHHHHH
T ss_conf 07647874377767311799999999997399818999726640879999999999839757-982899-9999999983
Q ss_pred CCCEEEEECCHHHCCHHHH-HHHHHHHHHHHCCCCCCCEECCCCEEEEEECCC
Q ss_conf 5851777404455028999-999998777502177997761254299994242
Q gi|254780163|r 575 NPYSVVLLDEIEKSHPDVL-NILLQIMDYGILTDQSGKKISFRNVILIMTTNA 626 (798)
Q Consensus 575 ~P~sVvl~DEiEKAh~~v~-~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~ 626 (798)
T Consensus 425 ~~~~lvliDTaG~~~rd~~~~~~~~~l~~-------~~~~---~~~Lvl~a~~ 467 (557)
T PRK12727 425 RDYKLVLIDTAGMGQRDRALAAQLNWLRA-------ARQV---TSLLVLPANA 467 (557)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHC-------CCCC---CEEEEEECCC
T ss_conf 69998999499988469999999998751-------4776---3599996889