HHsearch alignment for GI: 254780163 and conserved domain: PRK13342
>PRK13342 recombination factor protein RarA; Reviewed.
Probab=99.77 E-value=2.7e-17 Score=143.42 Aligned_cols=245 Identities=24% Similarity=0.370 Sum_probs=167.6
Q ss_pred HHHHHCCCCHHHHHHHHH------HHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEH
Q ss_conf 887754861122217899------99999986226778748966764116689999999985489883452014455404
Q gi|254780163|r 195 TEKVKKGKVDILVGRHEE------INRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDM 268 (798)
Q Consensus 195 Te~AreGKLDPVIGRd~E------I~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~ 268 (798)
T Consensus 4 Aer~RP~~lde~vGQ~hllg~~~~L~~~i---~~~~~~s~Il~GPPG~GKTTlA~iiA~~~----------~~~f~~lnA 70 (417)
T PRK13342 4 AERMRPKTLDEVVGQEHLLGPGKPLRRMI---EAGRLSSMILWGPPGTGKTTLARIIAGAT----------DAEFEALSA 70 (417)
T ss_pred HHHHCCCCHHHHCCCHHHHCCCHHHHHHH---HCCCCCEEEEECCCCCCHHHHHHHHHHHH----------CCCEEEEEC
T ss_conf 16449998888579877608971999999---76999759988969998999999999986----------898899614
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHCCC---CCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 675306343123789999999872038---98399973616630155444344777888876630266038873048999
Q gi|254780163|r 269 GNLIAGTRYRGDFEERIKKIVKEIESY---ANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEY 345 (798)
Q Consensus 269 ~~l~ag~~~rg~fe~r~~~~~~~~~~~---~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~IgatT~~ey 345 (798)
T Consensus 71 ~~--~gv-------~dir~ii~~a~~~~~~~~tilfiDEIHRf---------nK~QQD~LLp~vE~g~iiLIgATTENP~ 132 (417)
T PRK13342 71 VT--SGV-------KDLREVIEEAKQSRLGRRTILFIDEIHRF---------NKAQQDALLPHVEDGTITLIGATTENPS 132 (417)
T ss_pred CC--CCH-------HHHHHHHHHHHHHHCCCCEEEEEECHHHC---------CHHHHHHHHHHHHCCCEEEEEECCCCCH
T ss_conf 10--388-------99999999988631489659999782005---------8899999987511265699974157922
Q ss_pred HHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHH--HHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 998520111432001443068786899999986127665--410351211178999998654201555646798899865
Q gi|254780163|r 346 RQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFE--EHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEA 423 (798)
Q Consensus 346 ~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye--~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea 423 (798)
T Consensus 133 ---f~in~aLlSRc~vf~l~~L~~~di~~iL~ral~~-e~~~~~~i~i~~~al~~i~~~s~GD------aR~aLN~LE~a 202 (417)
T PRK13342 133 ---FEVNPALLSRAQVFELKPLSEEDLEQLLKRALED-ERGLGRKLELDDEALDALARLADGD------ARRALNLLELA 202 (417)
T ss_pred ---HHCCHHHHHHHHHEECCCCCHHHHHHHHHHHHHH-HHCCCCCCCCCHHHHHHHHHHCCCC------HHHHHHHHHHH
T ss_conf ---5348989856570020589999999999999987-7433788776999999999814985------99999999999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCHH--HHHHHHHHH
Q ss_conf 333321144322113657899986631024531011100112334210000246653458--999999999
Q gi|254780163|r 424 GASQILQPLSKRRKFITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQE--EAIKKLSSS 492 (798)
Q Consensus 424 ~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~--~ai~~v~~~ 492 (798)
T Consensus 203 ~~------~~~~~~~i~~~~~~~~~~~~~--~---~yDk~gd~-HYd~iSAf~KSiRGSDpdAAlyyLarm 261 (417)
T PRK13342 203 AA------AAAGGEVITLELLEEALQRRA--A---RYDKDGDE-HYDLISALHKSIRGSDPDAALYYLARM 261 (417)
T ss_pred HH------CCCCCCCCCHHHHHHHHHHCC--C---CCCCCCCH-HHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 85------258997348999999984410--3---57778634-789999999985169954899999999