HHsearch alignment for GI: 254780163 and conserved domain: PRK13531
>PRK13531 regulatory ATPase RavA; Provisional.
Probab=98.43 E-value=2.7e-05 Score=57.21 Aligned_cols=142 Identities=23% Similarity=0.400 Sum_probs=91.8
Q ss_pred HHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEEHHHH
Q ss_conf 2334210000246653458999999999877520445657874068861432003889999987304-773377206886
Q gi|254780163|r 465 DSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL-GVQLLRFDMSEY 543 (798)
Q Consensus 465 ~~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~-~~~lir~dmsey 543 (798)
T Consensus 8 ~eri~~l~~~L~~gl~ERe~~i~l~lLaala---g-----e---hvlllGPPGtAKS~larrl~~~~~~a~~FeyLltRF 76 (498)
T PRK13531 8 AERISRLSSALEKGLYERSHAIRLCLLAALS---G-----E---SVFLLGPPGIAKSLIARRLKFAFQHARAFEYLMTRF 76 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C-----C---CEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHCC
T ss_conf 9999999999970114469999999999972---8-----9---469888995138899999999855740899998746
Q ss_pred HCCC------CCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCC
Q ss_conf 1246------5301104780002564443100355515851777404455028999999998777502177997761254
Q gi|254780163|r 544 MERH------AVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRN 617 (798)
Q Consensus 544 ~e~~------~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n 617 (798)
T Consensus 77 stPeElFGP~si~~Lk~~-g~y~R~t-~G~LP~A------~iaFLDEIfKansAILNtLLtilNEr~f~nG~-~~~~vPL 147 (498)
T PRK13531 77 STPEEVFGPLSIQALKDE-GRYERLT-SGYLPEA------EIVFLDEIWKAGPAILNTLLTAINERRFRNGA-HEEKIPM 147 (498)
T ss_pred CCHHHHCCCCCHHHHHHC-CEEEEEC-CCCCCCC------EEEHHHHHHHCCHHHHHHHHHHHHHHEECCCC-CEECCCH
T ss_conf 988885383329987117-8489722-6758866------13157878614889999999986464034798-3130446
Q ss_pred EEEEEECCC
Q ss_conf 299994242
Q gi|254780163|r 618 VILIMTTNA 626 (798)
Q Consensus 618 ~iii~TsN~ 626 (798)
T Consensus 148 ~~li~ASNE 156 (498)
T PRK13531 148 RLLVAASNE 156 (498)
T ss_pred HHHHHCCCC
T ss_conf 886430467