HHsearch alignment for GI: 254780163 and conserved domain: PRK13531

>PRK13531 regulatory ATPase RavA; Provisional.
Probab=98.43  E-value=2.7e-05  Score=57.21  Aligned_cols=142  Identities=23%  Similarity=0.400  Sum_probs=91.8

Q ss_pred             HHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEEHHHH
Q ss_conf             2334210000246653458999999999877520445657874068861432003889999987304-773377206886
Q gi|254780163|r  465 DSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL-GVQLLRFDMSEY  543 (798)
Q Consensus       465 ~~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~-~~~lir~dmsey  543 (798)
T Consensus         8 ~eri~~l~~~L~~gl~ERe~~i~l~lLaala---g-----e---hvlllGPPGtAKS~larrl~~~~~~a~~FeyLltRF   76 (498)
T PRK13531          8 AERISRLSSALEKGLYERSHAIRLCLLAALS---G-----E---SVFLLGPPGIAKSLIARRLKFAFQHARAFEYLMTRF   76 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C-----C---CEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHCC
T ss_conf             9999999999970114469999999999972---8-----9---469888995138899999999855740899998746


Q ss_pred             HCCC------CCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCC
Q ss_conf             1246------5301104780002564443100355515851777404455028999999998777502177997761254
Q gi|254780163|r  544 MERH------AVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRN  617 (798)
Q Consensus       544 ~e~~------~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n  617 (798)
T Consensus        77 stPeElFGP~si~~Lk~~-g~y~R~t-~G~LP~A------~iaFLDEIfKansAILNtLLtilNEr~f~nG~-~~~~vPL  147 (498)
T PRK13531         77 STPEEVFGPLSIQALKDE-GRYERLT-SGYLPEA------EIVFLDEIWKAGPAILNTLLTAINERRFRNGA-HEEKIPM  147 (498)
T ss_pred             CCHHHHCCCCCHHHHHHC-CEEEEEC-CCCCCCC------EEEHHHHHHHCCHHHHHHHHHHHHHHEECCCC-CEECCCH
T ss_conf             988885383329987117-8489722-6758866------13157878614889999999986464034798-3130446


Q ss_pred             EEEEEECCC
Q ss_conf             299994242
Q gi|254780163|r  618 VILIMTTNA  626 (798)
Q Consensus       618 ~iii~TsN~  626 (798)
T Consensus       148 ~~li~ASNE  156 (498)
T PRK13531        148 RLLVAASNE  156 (498)
T ss_pred             HHHHHCCCC
T ss_conf             886430467