HHsearch alignment for GI: 254780163 and conserved domain: PRK13851

>PRK13851 type IV secretion system protein VirB11; Provisional.
Probab=95.93  E-value=0.0095  Score=38.89  Aligned_cols=87  Identities=30%  Similarity=0.434  Sum_probs=36.4

Q ss_pred             EEEEECCCCHHHHHHHHHHH--HHCCCCEEEE-EHHHHHCC--CCCCHHCCCCCHHCCCCCC-----CCCCHHHHHCCCE
Q ss_conf             68861432003889999987--3047733772-06886124--6530110478000256444-----3100355515851
Q gi|254780163|r  509 CYVFSGPTGVGKTEISKQLA--FALGVQLLRF-DMSEYMER--HAVSRLIGAPPGYVGFGQG-----GILADSVDQNPYS  578 (798)
Q Consensus       509 ~flf~GptGvGKTelak~la--~~~~~~lir~-dmsey~e~--~~vs~LiGappGYvG~~eg-----g~Lte~vr~~P~s  578 (798)
T Consensus       164 NIlIsGgTGSGKTTllnALl~~IP~~eRIvtIEDt~EL~l~~~n~V~-l~~~~~---~~g~~~vt~~~Ll~~aLRmrPDR  239 (343)
T PRK13851        164 TMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVR-LLYSKN---GAGLGAVTAEHLLQASLRMRPDR  239 (343)
T ss_pred             CEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEE-EEECCC---CCCCCCCCHHHHHHHHHCCCCCE
T ss_conf             89998889861999999999628965527996115002589999689-996589---88858397999999986079982


Q ss_pred             EEEECCHHHCCHHHHHHHHHHHHHH
Q ss_conf             7774044550289999999987775
Q gi|254780163|r  579 VVLLDEIEKSHPDVLNILLQIMDYG  603 (798)
Q Consensus       579 Vvl~DEiEKAh~~v~~~llqild~G  603 (798)
T Consensus       240 -IivGEvR--G~EA~d-~L~A~nTG  260 (343)
T PRK13851        240 -ILLGEMR--DDAAWA-YLSEVVSG  260 (343)
T ss_pred             -EEEEEEC--CHHHHH-HHHHHHCC
T ss_conf             -8998526--699999-99998469