HHsearch alignment for GI: 254780163 and conserved domain: PRK13851
>PRK13851 type IV secretion system protein VirB11; Provisional.
Probab=95.93 E-value=0.0095 Score=38.89 Aligned_cols=87 Identities=30% Similarity=0.434 Sum_probs=36.4
Q ss_pred EEEEECCCCHHHHHHHHHHH--HHCCCCEEEE-EHHHHHCC--CCCCHHCCCCCHHCCCCCC-----CCCCHHHHHCCCE
Q ss_conf 68861432003889999987--3047733772-06886124--6530110478000256444-----3100355515851
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLA--FALGVQLLRF-DMSEYMER--HAVSRLIGAPPGYVGFGQG-----GILADSVDQNPYS 578 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la--~~~~~~lir~-dmsey~e~--~~vs~LiGappGYvG~~eg-----g~Lte~vr~~P~s 578 (798)
T Consensus 164 NIlIsGgTGSGKTTllnALl~~IP~~eRIvtIEDt~EL~l~~~n~V~-l~~~~~---~~g~~~vt~~~Ll~~aLRmrPDR 239 (343)
T PRK13851 164 TMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVR-LLYSKN---GAGLGAVTAEHLLQASLRMRPDR 239 (343)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEE-EEECCC---CCCCCCCCHHHHHHHHHCCCCCE
T ss_conf 89998889861999999999628965527996115002589999689-996589---88858397999999986079982
Q ss_pred EEEECCHHHCCHHHHHHHHHHHHHH
Q ss_conf 7774044550289999999987775
Q gi|254780163|r 579 VVLLDEIEKSHPDVLNILLQIMDYG 603 (798)
Q Consensus 579 Vvl~DEiEKAh~~v~~~llqild~G 603 (798)
T Consensus 240 -IivGEvR--G~EA~d-~L~A~nTG 260 (343)
T PRK13851 240 -ILLGEMR--DDAAWA-YLSEVVSG 260 (343)
T ss_pred -EEEEEEC--CHHHHH-HHHHHHCC
T ss_conf -8998526--699999-99998469