HHsearch alignment for GI: 254780163 and conserved domain: PRK13946
>PRK13946 shikimate kinase; Provisional.
Probab=97.66 E-value=0.0069 Score=39.88 Aligned_cols=139 Identities=13% Similarity=0.261 Sum_probs=70.6
Q ss_pred HHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHH-HHHCCCCC------CCH--HHHHHHHH
Q ss_conf 9862267787489667641166899999999854898834520144554046-75306343------123--78999999
Q gi|254780163|r 218 QILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMG-NLIAGTRY------RGD--FEERIKKI 288 (798)
Q Consensus 218 qIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~-~l~ag~~~------rg~--fe~r~~~~ 288 (798)
T Consensus 13 ~~~~~l~kknIvLIG~mGsGKStvGk~LA~~L~~----------~fiD~D~~IE~~~g~sI~eIF~~~GE~~FR~~E~~~ 82 (195)
T PRK13946 13 QIRAALGKRTVVLVGLMGAGKSTVGRRLATMLGL----------PFLDADTEIERAARMTIPEIFATYGEPEFRDLERRV 82 (195)
T ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCC----------CEEECHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHH
T ss_conf 9999858995899899999889999999999797----------989885999998099899999986979999989999
Q ss_pred HHHHCCCCCEEEEECCHHHHHCCCCCCCCC-CCHHHHHHHHH-CCCCEEEEEECCHHH-HHHHHHCCHHHHHHCEEEEEC
Q ss_conf 987203898399973616630155444344-77788887663-026603887304899-999852011143200144306
Q gi|254780163|r 289 VKEIESYANAILYIDEIHTLVGAGSASGIS-VDASNLLKPAL-SSGAVRCIGSTTYSE-YRQFFEKDKALVRRFQKIDVS 365 (798)
Q Consensus 289 ~~~~~~~~~~ilfideih~ligag~~~g~~-~d~an~lkP~L-~rg~~~~IgatT~~e-y~~~~e~d~al~rrF~~i~v~ 365 (798)
T Consensus 83 l~~l~~~~~~V---------I---stGGG~v~~~~n~-~-~L~~~g~vI~L-~~~~e~l~~R-l~~~~--~R---PL-l~ 140 (195)
T PRK13946 83 IARLLKGGPLV---------L---ATGGGAFMNEETR-A-AIREKGISVWL-KADLDVLWER-VSRRD--TR---PL-LR 140 (195)
T ss_pred HHHHHCCCCEE---------E---ECCCCCCCCHHHH-H-HHHHCCEEEEE-ECCHHHHHHH-HCCCC--CC---CC-CC
T ss_conf 99986489879---------9---7587423689999-9-99957968998-4999999999-72899--99---98-99
Q ss_pred CCCHHHHHH-HHHHHHHHHHHHCC
Q ss_conf 878689999-99861276654103
Q gi|254780163|r 366 EPSIEDAIE-IVKGIKPYFEEHHQ 388 (798)
Q Consensus 366 ep~~~~~~~-iL~~~~~~ye~~h~ 388 (798)
T Consensus 141 ~~~~~~~l~~l~~~R~~lY~~Ad~ 164 (195)
T PRK13946 141 TADPKETLARLMEERYPVYAQADL 164 (195)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCE
T ss_conf 988799999999999999997898