HHsearch alignment for GI: 254780163 and conserved domain: PRK13947
>PRK13947 shikimate kinase; Provisional.
Probab=97.03 E-value=0.023 Score=36.17 Aligned_cols=137 Identities=18% Similarity=0.262 Sum_probs=63.8
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHCC--CCCHHHHEEEEEEEEHHHHHCCCCCCCH--HHHHHHHHHHHHCCCCCEEEE
Q ss_conf 874896676411668999999998548--9883452014455404675306343123--789999999872038983999
Q gi|254780163|r 226 NNPLYVGDPGVGKTAIAEGFAKQIVDG--MVPDILLGARIFSLDMGNLIAGTRYRGD--FEERIKKIVKEIESYANAILY 301 (798)
Q Consensus 226 Nn~~lvG~~gvGktaive~la~~i~~~--~vp~~l~~~~i~~ld~~~l~ag~~~rg~--fe~r~~~~~~~~~~~~~~ilf 301 (798)
T Consensus 2 knI~LiG~mGsGKTtiGk~La~~L~~~fiD~D~~Ie--~~~g~sI~eIf~~---~GE~~FR~~E~~~l~~~~~~~~~V-- 74 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKKVATTLSFGFIDTDKEIE--KMAGMTVSEIFEK---DGEVRFRSLEKAAVRKAARLKNLV-- 74 (171)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHH--HHCCCCHHHHHHH---HCHHHHHHHHHHHHHHHCCCCCEE--
T ss_conf 858997999998899999999997969898749999--8829988999998---489999999999999740368979--
Q ss_pred ECCHHHHHCCCCCCCCC-CCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHH-HHHHHHHH
Q ss_conf 73616630155444344-77788887663026603887304899999852011143200144306878689-99999861
Q gi|254780163|r 302 IDEIHTLVGAGSASGIS-VDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIED-AIEIVKGI 379 (798)
Q Consensus 302 ideih~ligag~~~g~~-~d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~-~~~iL~~~ 379 (798)
T Consensus 75 -------i---stGGG~v~~~~n~-~-~l~~~g~vi~L~~~~~~l~~Rl~~~~--~R---Pl-l~~~~~~~~l~~l~~~R 136 (171)
T PRK13947 75 -------I---ATGGGVVLNPENI-V-QLRKNGVLICLVARPEVILRRIKKKK--DR---PL-LMVGNPEERIRELLKER 136 (171)
T ss_pred -------E---ECCCCCCCCHHHH-H-HHHHCCEEEEECCCHHHHHHHHHCCC--CC---CC-CCCCCHHHHHHHHHHHH
T ss_conf -------9---7898500699999-9-99968989997399999999972899--99---97-98998799999999999
Q ss_pred HHHHHHHC
Q ss_conf 27665410
Q gi|254780163|r 380 KPYFEEHH 387 (798)
Q Consensus 380 ~~~ye~~h 387 (798)
T Consensus 137 ~~~Y~~Ad 144 (171)
T PRK13947 137 EPFYRFAD 144 (171)
T ss_pred HHHHHHCC
T ss_conf 99999769