HHsearch alignment for GI: 254780163 and conserved domain: PRK13947

>PRK13947 shikimate kinase; Provisional.
Probab=97.03  E-value=0.023  Score=36.17  Aligned_cols=137  Identities=18%  Similarity=0.262  Sum_probs=63.8

Q ss_pred             CCEEEECCCCCHHHHHHHHHHHHHHCC--CCCHHHHEEEEEEEEHHHHHCCCCCCCH--HHHHHHHHHHHHCCCCCEEEE
Q ss_conf             874896676411668999999998548--9883452014455404675306343123--789999999872038983999
Q gi|254780163|r  226 NNPLYVGDPGVGKTAIAEGFAKQIVDG--MVPDILLGARIFSLDMGNLIAGTRYRGD--FEERIKKIVKEIESYANAILY  301 (798)
Q Consensus       226 Nn~~lvG~~gvGktaive~la~~i~~~--~vp~~l~~~~i~~ld~~~l~ag~~~rg~--fe~r~~~~~~~~~~~~~~ilf  301 (798)
T Consensus         2 knI~LiG~mGsGKTtiGk~La~~L~~~fiD~D~~Ie--~~~g~sI~eIf~~---~GE~~FR~~E~~~l~~~~~~~~~V--   74 (171)
T PRK13947          2 KNIVLIGFMGTGKTTVGKKVATTLSFGFIDTDKEIE--KMAGMTVSEIFEK---DGEVRFRSLEKAAVRKAARLKNLV--   74 (171)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHH--HHCCCCHHHHHHH---HCHHHHHHHHHHHHHHHCCCCCEE--
T ss_conf             858997999998899999999997969898749999--8829988999998---489999999999999740368979--


Q ss_pred             ECCHHHHHCCCCCCCCC-CCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHH-HHHHHHHH
Q ss_conf             73616630155444344-77788887663026603887304899999852011143200144306878689-99999861
Q gi|254780163|r  302 IDEIHTLVGAGSASGIS-VDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIED-AIEIVKGI  379 (798)
Q Consensus       302 ideih~ligag~~~g~~-~d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~-~~~iL~~~  379 (798)
T Consensus        75 -------i---stGGG~v~~~~n~-~-~l~~~g~vi~L~~~~~~l~~Rl~~~~--~R---Pl-l~~~~~~~~l~~l~~~R  136 (171)
T PRK13947         75 -------I---ATGGGVVLNPENI-V-QLRKNGVLICLVARPEVILRRIKKKK--DR---PL-LMVGNPEERIRELLKER  136 (171)
T ss_pred             -------E---ECCCCCCCCHHHH-H-HHHHCCEEEEECCCHHHHHHHHHCCC--CC---CC-CCCCCHHHHHHHHHHHH
T ss_conf             -------9---7898500699999-9-99968989997399999999972899--99---97-98998799999999999


Q ss_pred             HHHHHHHC
Q ss_conf             27665410
Q gi|254780163|r  380 KPYFEEHH  387 (798)
Q Consensus       380 ~~~ye~~h  387 (798)
T Consensus       137 ~~~Y~~Ad  144 (171)
T PRK13947        137 EPFYRFAD  144 (171)
T ss_pred             HHHHHHCC
T ss_conf             99999769