HHsearch alignment for GI: 254780163 and conserved domain: TIGR00174

>TIGR00174 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) .; GO: 0004811 tRNA isopentenyltransferase activity, 0005524 ATP binding, 0008033 tRNA processing.
Probab=95.78  E-value=0.0075  Score=39.65  Aligned_cols=66  Identities=24%  Similarity=0.396  Sum_probs=46.0

Q ss_pred             EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHH-----HC----------------------CCC-CCC
Q ss_conf             48966764116689999999985489883452014455404675-----30----------------------634-312
Q gi|254780163|r  228 PLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNL-----IA----------------------GTR-YRG  279 (798)
Q Consensus       228 ~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l-----~a----------------------g~~-~rg  279 (798)
T Consensus         2 i~i~GpTAvGKs~L~i~La~~l----------naEiI~~DS~qiYK~~dIgtaKp~~~e~~~ipH~l~Dildp~e~y~~~   71 (307)
T TIGR00174         2 IVIMGPTAVGKSNLAIQLAKKL----------NAEIISVDSMQIYKGMDIGTAKPSLQERKGIPHHLIDILDPSESYSAA   71 (307)
T ss_pred             EEEEECCCCCHHHHHHHHHHHC----------CEEEEECCCHHHHCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCH
T ss_conf             6774088554778999988768----------957874350232237875357889687534981585134712003708


Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             378999999987203898399973
Q gi|254780163|r  280 DFEERIKKIVKEIESYANAILYID  303 (798)
Q Consensus       280 ~fe~r~~~~~~~~~~~~~~ilfid  303 (798)
T Consensus        72 ~F~~~~~~~~~~i~~~Gkipl~VG   95 (307)
T TIGR00174        72 DFQTQALNAIADITARGKIPLLVG   95 (307)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             899999999999985698348868