HHsearch alignment for GI: 254780163 and conserved domain: TIGR00382
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=99.96 E-value=7.2e-29 Score=226.60 Aligned_cols=278 Identities=29% Similarity=0.422 Sum_probs=214.9
Q ss_pred CCCCHHHHHCCHHHHHHHHCCHHHHHHHCHHHHHHHHHHH----HHHHHC--CCC--CCC-C------------CCCEEE
Q ss_conf 4531011100112334210000246653458999999999----877520--445--657-8------------740688
Q gi|254780163|r 453 RSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSS----IKIARA--GLS--DPN-K------------PIGCYV 511 (798)
Q Consensus 453 ~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~v~~~----i~~~~~--gl~--~~~-r------------P~g~fl 511 (798)
T Consensus 87 ~~lP~P~----------eik~~LD~YVIGQe~AKKVLsVAVYNHYKRl~~~~~n~~~d~~D~nvelehleeVEL~KSNIL 156 (452)
T TIGR00382 87 SELPTPK----------EIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNLKEKNKKSDNGDSNVELEHLEEVELSKSNIL 156 (452)
T ss_pred HCCCCCH----------HHHHHHCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 2478827----------999972136123101052543241124666532430455588400023544444333006624
Q ss_pred EECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCC-------EEEEECC
Q ss_conf 614320038899999873047733772068861246530110478000256444310035551585-------1777404
Q gi|254780163|r 512 FSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPY-------SVVLLDE 584 (798)
Q Consensus 512 f~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~-------sVvl~DE 584 (798)
T Consensus 157 LiGPTGSGKTLLAqTLA~~L~VPfAiADATtLTEA-----------GYVGEDVENIL~~Llq~ad~DV~kA~kGIiYIDE 225 (452)
T TIGR00382 157 LIGPTGSGKTLLAQTLARILNVPFAIADATTLTEA-----------GYVGEDVENILLKLLQAADYDVEKAQKGIIYIDE 225 (452)
T ss_pred EECCCCCCHHHHHHHHHHHCCCCEEECCHHHHHCC-----------CCCCCCHHHHHHHHHHHCCCCHHHHCCCEEEEEC
T ss_conf 54688852689999999873887421111102006-----------6424228899999987414552452785089842
Q ss_pred HHHCCH--------------HHHHHHHHHHHHHHCCC---CCCCEECCCCEEEEEECCC-----CH----HH-----HHH
Q ss_conf 455028--------------99999999877750217---7997761254299994242-----14----55-----330
Q gi|254780163|r 585 IEKSHP--------------DVLNILLQIMDYGILTD---QSGKKISFRNVILIMTTNA-----GA----LE-----MSK 633 (798)
Q Consensus 585 iEKAh~--------------~v~~~llqild~G~ltd---~~Gr~vdf~n~iii~TsN~-----G~----~~-----~~~ 633 (798)
T Consensus 226 IDKIaRkSEN~SITRDVSGEGVQQALLKi~E-GTvA~vPPqGGRKHP~~~~iqiDTs~ILFICGGAF~GL~~iI~~R~~~ 304 (452)
T TIGR00382 226 IDKIARKSENPSITRDVSGEGVQQALLKIIE-GTVANVPPQGGRKHPQQEFIQIDTSNILFICGGAFVGLEKIIKKRTEK 304 (452)
T ss_pred CCCHHHHCCCCEEEEEECCCHHHHHHHHHHH-CCEEEECCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHHHHHHHHCC
T ss_conf 2310121577801122175549999998760-323431754488688657688647640011054344489999887455
Q ss_pred CC-CCCCCCCCHHHHHH----HHHH---------HCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH----HC
Q ss_conf 36-89882111488999----9987---------2887881776828962889999999999999999999998----66
Q gi|254780163|r 634 AR-IGFGSSRNDDADKE----ALRN---------FLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQ----EK 695 (798)
Q Consensus 634 ~~-~g~~~~~~~~~~~~----~l~~---------~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~----~~ 695 (798)
T Consensus 305 ~~~iGF~~~~~~~~~~~~~~~~L~~v~~~DL~kFGLIPEfIGRLPV~a~L~~L~~eAL~~IL~~PkNAlvKQY~~lf~ld 384 (452)
T TIGR00382 305 KSSIGFGAEVKKKSKEKSEEELLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKLD 384 (452)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf 53335455210045787899999751711122105551011053402027878878999985254444889999971645
Q ss_pred CCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECC
Q ss_conf 988999889999999718981015326799999862359999996296768884899996078
Q gi|254780163|r 696 GISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKVPLADEILFGKLKKGGGVVKVSLNPD 758 (798)
Q Consensus 696 ~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~g~~~~~v~~~~~ 758 (798)
T Consensus 385 ~VeL~F~~eAl~~IA~~A~~RkTGARGLRsI~E~~lLD-----vMf-eLPs~~~~~kv~it~~ 441 (452)
T TIGR00382 385 NVELEFEEEALKAIAKKALERKTGARGLRSIVEGLLLD-----VMF-ELPSLEDLEKVVITKE 441 (452)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----HCC-CCCCHHCCCEEEEEHH
T ss_conf 61134558889999999985076751578999999875-----314-7886115756787077