HHsearch alignment for GI: 254780163 and conserved domain: TIGR00635

>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=98.84  E-value=2.9e-08  Score=78.52  Aligned_cols=192  Identities=22%  Similarity=0.340  Sum_probs=122.1

Q ss_pred             HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCC
Q ss_conf             66534589999999998775204456578740688614320038899999873047733772068861246530110478
Q gi|254780163|r  477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAP  556 (798)
Q Consensus       477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGap  556 (798)
T Consensus         4 ~eFiGQ~~vk~~L~l~I~AAk~----R~e~LDH~LL~GPPGLGKTTLA~IiA~Emg~~l~iTsGP~L~k-----------   68 (305)
T TIGR00635         4 AEFIGQEKVKEQLQLFIEAAKM----RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK-----------   68 (305)
T ss_pred             HHCCCCHHHHHHHHHHHHHHHH----CCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCC-----------
T ss_conf             1105828899999999999982----4897341663175687467899999998389326740675547-----------


Q ss_pred             CHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCC-----CCCCCEECCC---CEEEEEECCCCH
Q ss_conf             00025644431003555158517774044550289999999987775021-----7799776125---429999424214
Q gi|254780163|r  557 PGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILT-----DQSGKKISFR---NVILIMTTNAGA  628 (798)
Q Consensus       557 pGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~lt-----d~~Gr~vdf~---n~iii~TsN~G~  628 (798)
T Consensus        69 Pg----DlaaiLt~-L--~~gDVLFIDEIHRL~p~~EE~LYpAMEDF~lDi~IG~Gp~Ar~v~ldLpPFTLvGATTR~G-  140 (305)
T TIGR00635        69 PG----DLAAILTN-L--EEGDVLFIDEIHRLSPAIEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAG-  140 (305)
T ss_pred             HH----HHHHHHHH-C--CCCCEEECCHHHHCCHHHHHHCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCC-
T ss_conf             57----89999970-5--6896310125650483345310530012178778712898525760686944200003477-


Q ss_pred             HHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHH
Q ss_conf             55330368988211148899999872887881776828962889999999999999999999998669889998899999
Q gi|254780163|r  629 LEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINW  708 (798)
Q Consensus       629 ~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~  708 (798)
T Consensus       141 -----------------~lt~PLrdRFG--~~~rl~------fY~~~EL~~Iv~R~A---------~~L~~ei~~~~a~~  186 (305)
T TIGR00635       141 -----------------MLTSPLRDRFG--IILRLE------FYTPEELAEIVSRSA---------GLLNIEIEQEAALE  186 (305)
T ss_pred             -----------------CCCCCHHHHHH--HHHHCC------CCCHHHHHHHHHHHH---------HHCCCCCCHHHHHH
T ss_conf             -----------------41031334544--745402------689878999987533---------44143007789999


Q ss_pred             HHHCCC-CCCCCCHHHHH
Q ss_conf             997189-81015326799
Q gi|254780163|r  709 LVSHGY-DVKMGARPLER  725 (798)
Q Consensus       709 l~~~~~-~~~~GAR~l~r  725 (798)
T Consensus       187 IArrSRGTPRIAnRLLRR  204 (305)
T TIGR00635       187 IARRSRGTPRIANRLLRR  204 (305)
T ss_pred             HHHHCCCCHHHHHHHHHH
T ss_conf             987547863788877676