HHsearch alignment for GI: 254780163 and conserved domain: TIGR01243
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=99.85 E-value=5.1e-18 Score=148.63 Aligned_cols=388 Identities=24% Similarity=0.394 Sum_probs=224.9
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHH
Q ss_conf 74896676411668999999998548988345201445540467530634312378999999987203898399973616
Q gi|254780163|r 227 NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIH 306 (798)
Q Consensus 227 n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih 306 (798)
T Consensus 242 G~ll~GPPGtGktllaka~ane~----------~a~f~~inGPei--msky~Ge~e~~lr~if~eaeenaP~iifideid 309 (980)
T TIGR01243 242 GVLLYGPPGTGKTLLAKAVANEA----------GAYFIAINGPEI--MSKYYGESEERLREIFKEAEENAPSIIFIDEID 309 (980)
T ss_pred CEEEECCCCCCHHHHHHHHHHHC----------CCEEEEECCCHH--HHHHCCCCHHHHHHHHHHHHHCCCCEEEEECHH
T ss_conf 35875589861789999987530----------551788506034--433136307899999986530587078741211
Q ss_pred HHHCCCCCCCCCCC-----HHHHH---HHHHCCCCEEEEEECCHHHHHHHHHCCHHHHH--HCEE-EEECCCCHHHHHHH
Q ss_conf 63015544434477-----78888---76630266038873048999998520111432--0014-43068786899999
Q gi|254780163|r 307 TLVGAGSASGISVD-----ASNLL---KPALSSGAVRCIGSTTYSEYRQFFEKDKALVR--RFQK-IDVSEPSIEDAIEI 375 (798)
Q Consensus 307 ~ligag~~~g~~~d-----~an~l---kP~L~rg~~~~IgatT~~ey~~~~e~d~al~r--rF~~-i~v~ep~~~~~~~i 375 (798)
T Consensus 310 aia--Pkr~e~~Geve~r~v~qlltlmdGlk~rG~v~viGatnrP~-----a~dPalrrPGrfdrei~~~~Pd~~~r~ei 382 (980)
T TIGR01243 310 AIA--PKREEVTGEVEKRVVAQLLTLMDGLKGRGKVIVIGATNRPD-----ALDPALRRPGRFDREIEIGVPDKEGRKEI 382 (980)
T ss_pred HCC--CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC-----CCCHHHCCCCCCCCEEEECCCCHHHHHHH
T ss_conf 007--64100001688999999999974002487289981468850-----02622427886443357418854567888
Q ss_pred HHHHHHHHHHHCCCEECCHHH-HHHHHHHHHHCCCCCC-HHHHHHHHHHH---HHHHHHHHHHHHHC-------------
Q ss_conf 986127665410351211178-9999986542015556-46798899865---33332114432211-------------
Q gi|254780163|r 376 VKGIKPYFEEHHQLRYSKEAI-RAAVQLSVRHFTSRKL-PDKAIDVIDEA---GASQILQPLSKRRK------------- 437 (798)
Q Consensus 376 L~~~~~~ye~~h~v~~~~~al-~~av~ls~ryi~~r~l-PdkAidllDea---~a~~~~~~~~~~~~------------- 437 (798)
T Consensus 383 l~~htr------~mP~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (980)
T TIGR01243 383 LQIHTR------NMPLAEDVDKDAVIKVLKDLEKDERFEKEKIEKIIEKVSKANSEDEIKEILKEDGNVYVEVRNRLIDK 456 (980)
T ss_pred HHHHHC------CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 876414------78750110057899999876665566788999999988631026789999750121246789999999
Q ss_pred ----------CCCHHHHHHHH-----HHC------------CCCCCHHHH-----HCCH-------------HHHHHHHC
Q ss_conf ----------36578999866-----310------------245310111-----0011-------------23342100
Q gi|254780163|r 438 ----------FITEKDIKKTI-----ASM------------NRSIHTTSF-----SRDD-------------DSVLSNLE 472 (798)
Q Consensus 438 ----------~~~~~~i~~~~-----~~~------------~~gip~~~~-----~~~~-------------~~~l~~l~ 472 (798)
T Consensus 457 ~l~~la~~thG~~Gadlaal~~eaam~~lrr~~~eg~i~~ea~~iP~~vl~~lkvt~~df~ealk~~~P~~~re~~~evP 536 (980)
T TIGR01243 457 LLDKLAEVTHGFVGADLAALAKEAAMAALRRLIREGKINLEAEEIPKEVLEELKVTMKDFKEALKMVEPSALREVLVEVP 536 (980)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEEECC
T ss_conf 99988654236203559999899999999987402774502677579999873222899999985106234110002337
Q ss_pred CHHHHHHHCHHHHHHHHHHHHHH--------HHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHH
Q ss_conf 00246653458999999999877--------5204456578740688614320038899999873047733772068861
Q gi|254780163|r 473 KNLGTVVYGQEEAIKKLSSSIKI--------ARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYM 544 (798)
Q Consensus 473 ~~l~~~v~GQ~~ai~~v~~~i~~--------~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~ 544 (798)
T Consensus 537 ~v~W~diGGlee~kq~lreaveWPlk~~~~f~k~G~~PP---~Gvll~-GPPGtGktllakava~es~anfi~v~GPe~- 611 (980)
T TIGR01243 537 NVKWEDIGGLEEVKQELREAVEWPLKAPEVFEKLGIRPP---KGVLLF-GPPGTGKTLLAKAVATESGANFIAVRGPEI- 611 (980)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCC---CCEEEE-CCCCCCHHHHHHHHHHCCCCCEEEECCCHH-
T ss_conf 511001466789999998775234440589986078899---734874-689861688888774014564677407312-
Q ss_pred CCCCCCHHCCCCCHHCCCCCC--CCCCHHHHHCCCEEEEECCHHHCCH-------------HHHHHHHHHHHHHHCCCCC
Q ss_conf 246530110478000256444--3100355515851777404455028-------------9999999987775021779
Q gi|254780163|r 545 ERHAVSRLIGAPPGYVGFGQG--GILADSVDQNPYSVVLLDEIEKSHP-------------DVLNILLQIMDYGILTDQS 609 (798)
Q Consensus 545 e~~~vs~LiGappGYvG~~eg--g~Lte~vr~~P~sVvl~DEiEKAh~-------------~v~~~llqild~G~ltd~~ 609 (798)
T Consensus 612 ----lskWvG-------ese~~ir~if~~arq~aP~~~f~deidaiaP~rG~~~~~~~vtd~~~nqll~e~d-------- 672 (980)
T TIGR01243 612 ----LSKWVG-------ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGASLDEKGVTDRIVNQLLTELD-------- 672 (980)
T ss_pred ----HHHHHC-------HHHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH--------
T ss_conf ----234403-------2479999999986412873787302111054124421001026899999998640--------
Q ss_pred CCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 977612542999942421455330368988211148899999872887881776828962889999999999999999
Q gi|254780163|r 610 GKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMK 687 (798)
Q Consensus 610 Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~ 687 (798)
T Consensus 673 G-~~~~~~vvvi~atnrP-----------------di~dP---allrP---Gr~dr~i~vP~Pd~~ar~~ifk~ht~~ 726 (980)
T TIGR01243 673 G-LEELSDVVVIAATNRP-----------------DILDP---ALLRP---GRLDRLILVPAPDEEARLEIFKIHTRS 726 (980)
T ss_pred C-CCCCCCEEEEEECCCC-----------------CCCCC---CCCCC---CCCCEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 4-4343665898615887-----------------42361---00488---741216860598556767676553111