HHsearch alignment for GI: 254780163 and conserved domain: TIGR01420
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.25 E-value=0.0068 Score=39.95 Aligned_cols=180 Identities=20% Similarity=0.364 Sum_probs=90.1
Q ss_pred CCCCCEEEEECCCCHHHHH-HHHHHHHHC---CCCEEEE-EHHHHHCCCCCCHHCCCCCHHCCCCCC---CCCCHHHHHC
Q ss_conf 7874068861432003889-999987304---7733772-068861246530110478000256444---3100355515
Q gi|254780163|r 504 NKPIGCYVFSGPTGVGKTE-ISKQLAFAL---GVQLLRF-DMSEYMERHAVSRLIGAPPGYVGFGQG---GILADSVDQN 575 (798)
Q Consensus 504 ~rP~g~flf~GptGvGKTe-lak~la~~~---~~~lir~-dmsey~e~~~vs~LiGappGYvG~~eg---g~Lte~vr~~ 575 (798)
T Consensus 124 ~~~~GLiLVTGPTGSGKSTTlAsmIDyIN~~~~~HIiTIEDPIEyvh~~~~s-li~QR--EvG~DT~sF~~ALraALReD 200 (350)
T TIGR01420 124 ERPRGLILVTGPTGSGKSTTLASMIDYINKNKAGHIITIEDPIEYVHKNKRS-LINQR--EVGLDTLSFANALRAALRED 200 (350)
T ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCEEEEECCCEE-EEECC--CCCCCHHHHHHHHHHHHCCC
T ss_conf 3669938987688986789999999787403888825631773141047702-45436--24675457999976841028
Q ss_pred CCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 85177740445502899999999877750217799776125429999424214553303689882111488999998728
Q gi|254780163|r 576 PYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFL 655 (798)
Q Consensus 576 P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f 655 (798)
T Consensus 201 P-DvILi--------------------GE~RD~E--T~~-----------~A----------L~AAETGHLV~gTLHTns 236 (350)
T TIGR01420 201 P-DVILI--------------------GEMRDLE--TVE-----------LA----------LTAAETGHLVFGTLHTNS 236 (350)
T ss_pred C-CEEEE--------------------ECCCCHH--HHH-----------HH----------HHHHHHCCHHHHHHHHHH
T ss_conf 9-88998--------------------2556278--999-----------99----------987421315676666423
Q ss_pred CHHHHCCCCEEEECCCCCHHHHHH--HHHHHHHHHHHHHHHC----CCE-----EEECHHHHHHHHHCC-CC-----CCC
Q ss_conf 878817768289628899999999--9999999999999866----988-----999889999999718-98-----101
Q gi|254780163|r 656 SPEFLNRLDSIIPFFPLSSDIIRQ--VVHKFIMKLELQLQEK----GIS-----FHFSEEVINWLVSHG-YD-----VKM 718 (798)
Q Consensus 656 ~peflnRid~ii~F~~l~~~~~~~--i~~~~l~~l~~~l~~~----~i~-----l~~~~~~~~~l~~~~-~~-----~~~ 718 (798)
T Consensus 237 A~~ti~RI---id~FP~~~~~qiR~~La~~L~Av~sQrL~p~~~G~GRv~~~Eil~~Tpav~~lIre~gk~~qi~~~i~~ 313 (350)
T TIGR01420 237 AAKTIERI---IDVFPAEEQEQIRTQLAESLVAVISQRLLPKKNGGGRVLAVEILINTPAVRNLIREEGKTHQIKSVIQT 313 (350)
T ss_pred HHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 88876777---425977566899999987678770005422338962588887521587899960287887689999871
Q ss_pred C-CHHHHHHHHHHHHH
Q ss_conf 5-32679999986235
Q gi|254780163|r 719 G-ARPLERIIKEHVKV 733 (798)
Q Consensus 719 G-AR~l~r~i~~~i~~ 733 (798)
T Consensus 314 G~~~~GM~TfdQ~L~~ 329 (350)
T TIGR01420 314 GRAQLGMQTFDQHLAK 329 (350)
T ss_pred CCCCCCCHHHHHHHHH
T ss_conf 4301110118889999