HHsearch alignment for GI: 254780163 and conserved domain: TIGR01420

>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.25  E-value=0.0068  Score=39.95  Aligned_cols=180  Identities=20%  Similarity=0.364  Sum_probs=90.1

Q ss_pred             CCCCCEEEEECCCCHHHHH-HHHHHHHHC---CCCEEEE-EHHHHHCCCCCCHHCCCCCHHCCCCCC---CCCCHHHHHC
Q ss_conf             7874068861432003889-999987304---7733772-068861246530110478000256444---3100355515
Q gi|254780163|r  504 NKPIGCYVFSGPTGVGKTE-ISKQLAFAL---GVQLLRF-DMSEYMERHAVSRLIGAPPGYVGFGQG---GILADSVDQN  575 (798)
Q Consensus       504 ~rP~g~flf~GptGvGKTe-lak~la~~~---~~~lir~-dmsey~e~~~vs~LiGappGYvG~~eg---g~Lte~vr~~  575 (798)
T Consensus       124 ~~~~GLiLVTGPTGSGKSTTlAsmIDyIN~~~~~HIiTIEDPIEyvh~~~~s-li~QR--EvG~DT~sF~~ALraALReD  200 (350)
T TIGR01420       124 ERPRGLILVTGPTGSGKSTTLASMIDYINKNKAGHIITIEDPIEYVHKNKRS-LINQR--EVGLDTLSFANALRAALRED  200 (350)
T ss_pred             HCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCEEEEECCCEE-EEECC--CCCCCHHHHHHHHHHHHCCC
T ss_conf             3669938987688986789999999787403888825631773141047702-45436--24675457999976841028


Q ss_pred             CCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             85177740445502899999999877750217799776125429999424214553303689882111488999998728
Q gi|254780163|r  576 PYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFL  655 (798)
Q Consensus       576 P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f  655 (798)
T Consensus       201 P-DvILi--------------------GE~RD~E--T~~-----------~A----------L~AAETGHLV~gTLHTns  236 (350)
T TIGR01420       201 P-DVILI--------------------GEMRDLE--TVE-----------LA----------LTAAETGHLVFGTLHTNS  236 (350)
T ss_pred             C-CEEEE--------------------ECCCCHH--HHH-----------HH----------HHHHHHCCHHHHHHHHHH
T ss_conf             9-88998--------------------2556278--999-----------99----------987421315676666423


Q ss_pred             CHHHHCCCCEEEECCCCCHHHHHH--HHHHHHHHHHHHHHHC----CCE-----EEECHHHHHHHHHCC-CC-----CCC
Q ss_conf             878817768289628899999999--9999999999999866----988-----999889999999718-98-----101
Q gi|254780163|r  656 SPEFLNRLDSIIPFFPLSSDIIRQ--VVHKFIMKLELQLQEK----GIS-----FHFSEEVINWLVSHG-YD-----VKM  718 (798)
Q Consensus       656 ~peflnRid~ii~F~~l~~~~~~~--i~~~~l~~l~~~l~~~----~i~-----l~~~~~~~~~l~~~~-~~-----~~~  718 (798)
T Consensus       237 A~~ti~RI---id~FP~~~~~qiR~~La~~L~Av~sQrL~p~~~G~GRv~~~Eil~~Tpav~~lIre~gk~~qi~~~i~~  313 (350)
T TIGR01420       237 AAKTIERI---IDVFPAEEQEQIRTQLAESLVAVISQRLLPKKNGGGRVLAVEILINTPAVRNLIREEGKTHQIKSVIQT  313 (350)
T ss_pred             HHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             88876777---425977566899999987678770005422338962588887521587899960287887689999871


Q ss_pred             C-CHHHHHHHHHHHHH
Q ss_conf             5-32679999986235
Q gi|254780163|r  719 G-ARPLERIIKEHVKV  733 (798)
Q Consensus       719 G-AR~l~r~i~~~i~~  733 (798)
T Consensus       314 G~~~~GM~TfdQ~L~~  329 (350)
T TIGR01420       314 GRAQLGMQTFDQHLAK  329 (350)
T ss_pred             CCCCCCCHHHHHHHHH
T ss_conf             4301110118889999