HHsearch alignment for GI: 254780163 and conserved domain: TIGR01818
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114 This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception.
Probab=96.49 E-value=0.016 Score=37.23 Aligned_cols=181 Identities=22% Similarity=0.431 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCC--CEEEECCCCCHHHHHHHHHHHHHHCC----------CCCHHHHEEEEEEEEHHHHH
Q ss_conf 2221789999999986226778--74896676411668999999998548----------98834520144554046753
Q gi|254780163|r 205 ILVGRHEEINRTIQILCRRSKN--NPLYVGDPGVGKTAIAEGFAKQIVDG----------MVPDILLGARIFSLDMGNLI 272 (798)
Q Consensus 205 PVIGRd~EI~riiqIL~RR~KN--n~~lvG~~gvGktaive~la~~i~~~----------~vp~~l~~~~i~~ld~~~l~ 272 (798)
T Consensus 136 ~liG~aPAMQevfR~igRL~~~~l~VlI~GESGTGKELVA~ALH~~s~R~~~PFiAlNmAAIP~~L~ESELFGHEkGAFT 215 (471)
T TIGR01818 136 ELIGEAPAMQEVFRAIGRLSRSDLSVLINGESGTGKELVARALHRHSPRARGPFIALNMAAIPKDLIESELFGHEKGAFT 215 (471)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECHHHCCHHHHHHHHCCCCCCCCC
T ss_conf 12368851689999999751696058885575775899999840137555777327302322246655432145653000
Q ss_pred CCC--CCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCC-------------CEEEE
Q ss_conf 063--431237899999998720389839997361663015544434477788887663026-------------60388
Q gi|254780163|r 273 AGT--RYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSG-------------AVRCI 337 (798)
Q Consensus 273 ag~--~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg-------------~~~~I 337 (798)
T Consensus 216 -GA~~~~~GRFEQ----------A~GG-TLFLDEIGDM---------Pl~~QTRLLRVL~~G~f~rVGG~~p~k~DVRi~ 274 (471)
T TIGR01818 216 -GANTRRQGRFEQ----------ADGG-TLFLDEIGDM---------PLDLQTRLLRVLADGEFYRVGGRTPIKVDVRIV 274 (471)
T ss_pred -CCCCCCCCCEEE----------CCCC-CEECCCCCCC---------CHHHHHHHHHHHCCCCEEEECCCEEEEEEEEEE
T ss_conf -102556777253----------4888-2101021678---------776877798864078657726820245504667
Q ss_pred EECCHHHHHHHHHCCH---HHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 7304899999852011---1432001443068786899999986127665410351211178999998654201555646
Q gi|254780163|r 338 GSTTYSEYRQFFEKDK---ALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPD 414 (798)
Q Consensus 338 gatT~~ey~~~~e~d~---al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPd 414 (798)
T Consensus 275 AAThq-~Le~lv~~G~FReDLfhRL~Vi~i~lPpLrER~eDi~~L~rhF------------L~~a~~~l--~~~~k~L~~ 339 (471)
T TIGR01818 275 AATHQ-DLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHF------------LALAAKEL--DVEPKLLSP 339 (471)
T ss_pred ECCCH-HHHHHHHCCCCHHHHHHHHCEEEECCCCCCCHHHHHHHHHHHH------------HHHHHHHC--CCCCCCCCH
T ss_conf 33665-6899965588135555512334621687212266899999999------------99988742--865113488
Q ss_pred HHHHHHH
Q ss_conf 7988998
Q gi|254780163|r 415 KAIDVID 421 (798)
Q Consensus 415 kAidllD 421 (798)
T Consensus 340 ~~~~~L~ 346 (471)
T TIGR01818 340 EALEALK 346 (471)
T ss_pred HHHHHHH
T ss_conf 9999997