HHsearch alignment for GI: 254780163 and conserved domain: TIGR01846
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=96.67 E-value=0.0013 Score=45.05 Aligned_cols=78 Identities=38% Similarity=0.639 Sum_probs=50.3
Q ss_pred CEEE-EECCCCHHHHHHHHHHH-HH---------CCCCE-------EEEE-------------------------HHHHH
Q ss_conf 0688-61432003889999987-30---------47733-------7720-------------------------68861
Q gi|254780163|r 508 GCYV-FSGPTGVGKTEISKQLA-FA---------LGVQL-------LRFD-------------------------MSEYM 544 (798)
Q Consensus 508 g~fl-f~GptGvGKTelak~la-~~---------~~~~l-------ir~d-------------------------msey~ 544 (798)
T Consensus 491 Ge~IGIvGpSGSGKSTLTKL~QRLYtP~~GqVLVDG~DLA~~DP~wLRRQ~gVVLQEn~LFsrSirdNI~l~~P~~~~-E 569 (703)
T TIGR01846 491 GEVIGIVGPSGSGKSTLTKLLQRLYTPEHGQVLVDGVDLAIADPAWLRRQVGVVLQENVLFSRSIRDNIALCNPGASV-E 569 (703)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHCCEEEEECCHHHCCCHHHHHHHCCCCCCH-H
T ss_conf 657998727898678999998861488887477703000101852010223023400021012278898517777698-9
Q ss_pred CCCCCCHHCCC-------CCHH---CCCCCCCCC----------CHHHHHCCCEEEEECCHHHC
Q ss_conf 24653011047-------8000---256444310----------03555158517774044550
Q gi|254780163|r 545 ERHAVSRLIGA-------PPGY---VGFGQGGIL----------ADSVDQNPYSVVLLDEIEKS 588 (798)
Q Consensus 545 e~~~vs~LiGa-------ppGY---vG~~egg~L----------te~vr~~P~sVvl~DEiEKA 588 (798)
T Consensus 570 ~Vi~AA~LAGA~dFI~~Lp~GY~T~vg-E~G~~LSGGQRQRIAiARALv~nP-rILifDEATSA 631 (703)
T TIGR01846 570 HVIAAAKLAGAHDFISELPQGYNTEVG-EKGANLSGGQRQRIAIARALVANP-RILIFDEATSA 631 (703)
T ss_pred HHHHHHHHCCHHHHHHHCCCCCCCCCE-EECCCCCCHHHHHHHHHHHHHCCC-CEEEHHHHHCC
T ss_conf 999998621858999736376774001-241566733789999999973589-46720113122