HHsearch alignment for GI: 254780163 and conserved domain: TIGR02397

>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=99.06  E-value=3.4e-09  Score=85.23  Aligned_cols=116  Identities=31%  Similarity=0.418  Sum_probs=58.2

Q ss_pred             HHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEE-------EHHHHHCCCCCC
Q ss_conf             6534589999999998775204456578740688614320038899999873047733772-------068861246530
Q gi|254780163|r  478 VVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRF-------DMSEYMERHAVS  550 (798)
Q Consensus       478 ~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~-------dmsey~e~~~vs  550 (798)
T Consensus        15 d~~GQ~~iv~tL~NAi~~~ri--------~HAYLF~GpRGtGKTS~ARIfAKaLNC~~~~~~PCn~C~~C~~i~~g~~~D   86 (363)
T TIGR02397        15 DVIGQEHIVKTLKNAIKNGRI--------AHAYLFSGPRGTGKTSIARIFAKALNCQGPDGEPCNECESCKEINSGSSLD   86 (363)
T ss_pred             CCCCCHHHHHHHHHHHHHCCC--------CCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCC
T ss_conf             023517999999999971896--------623450285997635589999998658878778777750227765289866


Q ss_pred             --HHCCCCCHHCCCCCCCCCCHHHHHCC----CEEEEECCHHHCCHHHHHHHHHHHHHH
Q ss_conf             --11047800025644431003555158----517774044550289999999987775
Q gi|254780163|r  551 --RLIGAPPGYVGFGQGGILADSVDQNP----YSVVLLDEIEKSHPDVLNILLQIMDYG  603 (798)
Q Consensus       551 --~LiGappGYvG~~egg~Lte~vr~~P----~sVvl~DEiEKAh~~v~~~llqild~G  603 (798)
T Consensus        87 viEiDAA--SN~gVD~IR~l~e~v~y~P~~~kYKvYIIDEVHMLS~~AFNALLKTLEEP  143 (363)
T TIGR02397        87 VIEIDAA--SNNGVDDIRELRENVKYAPSKGKYKVYIIDEVHMLSKSAFNALLKTLEEP  143 (363)
T ss_pred             EEEECCC--CCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf             6886486--56878899999873036875544335887323028656899987652279