HHsearch alignment for GI: 254780163 and conserved domain: TIGR02397
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=99.06 E-value=3.4e-09 Score=85.23 Aligned_cols=116 Identities=31% Similarity=0.418 Sum_probs=58.2
Q ss_pred HHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEE-------EHHHHHCCCCCC
Q ss_conf 6534589999999998775204456578740688614320038899999873047733772-------068861246530
Q gi|254780163|r 478 VVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRF-------DMSEYMERHAVS 550 (798)
Q Consensus 478 ~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~-------dmsey~e~~~vs 550 (798)
T Consensus 15 d~~GQ~~iv~tL~NAi~~~ri--------~HAYLF~GpRGtGKTS~ARIfAKaLNC~~~~~~PCn~C~~C~~i~~g~~~D 86 (363)
T TIGR02397 15 DVIGQEHIVKTLKNAIKNGRI--------AHAYLFSGPRGTGKTSIARIFAKALNCQGPDGEPCNECESCKEINSGSSLD 86 (363)
T ss_pred CCCCCHHHHHHHHHHHHHCCC--------CCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCC
T ss_conf 023517999999999971896--------623450285997635589999998658878778777750227765289866
Q ss_pred --HHCCCCCHHCCCCCCCCCCHHHHHCC----CEEEEECCHHHCCHHHHHHHHHHHHHH
Q ss_conf --11047800025644431003555158----517774044550289999999987775
Q gi|254780163|r 551 --RLIGAPPGYVGFGQGGILADSVDQNP----YSVVLLDEIEKSHPDVLNILLQIMDYG 603 (798)
Q Consensus 551 --~LiGappGYvG~~egg~Lte~vr~~P----~sVvl~DEiEKAh~~v~~~llqild~G 603 (798)
T Consensus 87 viEiDAA--SN~gVD~IR~l~e~v~y~P~~~kYKvYIIDEVHMLS~~AFNALLKTLEEP 143 (363)
T TIGR02397 87 VIEIDAA--SNNGVDDIRELRENVKYAPSKGKYKVYIIDEVHMLSKSAFNALLKTLEEP 143 (363)
T ss_pred EEEECCC--CCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 6886486--56878899999873036875544335887323028656899987652279