HHsearch alignment for GI: 254780163 and conserved domain: TIGR02397
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=98.53 E-value=1.3e-05 Score=59.38 Aligned_cols=207 Identities=24% Similarity=0.304 Sum_probs=139.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCEE-EECCCCCHHHHHHHHHHHHHHCCCCCHH--HHEE------------EEEEE
Q ss_conf 6112221789999999986226778748-9667641166899999999854898834--5201------------44554
Q gi|254780163|r 202 KVDILVGRHEEINRTIQILCRRSKNNPL-YVGDPGVGKTAIAEGFAKQIVDGMVPDI--LLGA------------RIFSL 266 (798)
Q Consensus 202 KLDPVIGRd~EI~riiqIL~RR~KNn~~-lvG~~gvGktaive~la~~i~~~~vp~~--l~~~------------~i~~l 266 (798)
T Consensus 12 ~F~d~~GQ~~iv~tL~NAi~~~ri~HAYLF~GpRGtGKTS~ARIfAKaLNC~-~~~~~PCn~C~~C~~i~~g~~~DviEi 90 (363)
T TIGR02397 12 TFEDVIGQEHIVKTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ-GPDGEPCNECESCKEINSGSSLDVIEI 90 (363)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHCCCCCCEEEE
T ss_conf 6110235179999999999718966234502859976355899999986588-787787777502277652898666886
Q ss_pred EHHHHHCCCCCCCHHHHHHHHHHHHHCCCC---C-EEEEECCHHHHHCCCCCCCCCCCHHH-HHHHHHCC--CCEEEEEE
Q ss_conf 046753063431237899999998720389---8-39997361663015544434477788-88766302--66038873
Q gi|254780163|r 267 DMGNLIAGTRYRGDFEERIKKIVKEIESYA---N-AILYIDEIHTLVGAGSASGISVDASN-LLKPALSS--GAVRCIGS 339 (798)
Q Consensus 267 d~~~l~ag~~~rg~fe~r~~~~~~~~~~~~---~-~ilfideih~ligag~~~g~~~d~an-~lkP~L~r--g~~~~Iga 339 (798)
T Consensus 91 D------AASN~gV--D~IR~l~e~v~y~P~~~kYKvYIIDEVHML---------S~~AFNALLK-TLEEPP~hV~FIlA 152 (363)
T TIGR02397 91 D------AASNNGV--DDIRELRENVKYAPSKGKYKVYIIDEVHML---------SKSAFNALLK-TLEEPPEHVVFILA 152 (363)
T ss_pred C------CCCCCCH--HHHHHHHHHHCCCCCCCCCCEEEEECCCCC---------CHHHHHHHHH-HHCCCCCCEEEEEE
T ss_conf 4------8656878--899999873036875544335887323028---------6568999876-52279876288873
Q ss_pred CCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 04899999852011143200144306878689999998612766541035121117899999865420155564679889
Q gi|254780163|r 340 TTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDV 419 (798)
Q Consensus 340 tT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidl 419 (798)
T Consensus 153 TTE--~~KiP--~TIlSR-CQrF~Fk~i~~~~i~~~L~~I~~~E----~I~~e~~AL~~IA~~a~GS~RD------Alsl 217 (363)
T TIGR02397 153 TTE--PHKIP--ATILSR-CQRFDFKRIPLEDIVERLKKILDKE----GIKIEDEALELIARAADGSMRD------ALSL 217 (363)
T ss_pred CCC--HHHCC--CCCEEE-CEEECCCCCCHHHHHHHHHHHHHHH----CCCCCHHHHHHHHHHCCCCCCH------HHHH
T ss_conf 487--11205--540210-0031267899899999999999870----8831778999999962896106------8899
Q ss_pred HHHHHHHHHHHHHHHH-HCCCCHHHHHHHH
Q ss_conf 9865333321144322-1136578999866
Q gi|254780163|r 420 IDEAGASQILQPLSKR-RKFITEKDIKKTI 448 (798)
Q Consensus 420 lDea~a~~~~~~~~~~-~~~~~~~~i~~~~ 448 (798)
T Consensus 218 lDQ~~~~~------~~~DG~i~~~~v~~~l 241 (363)
T TIGR02397 218 LDQAISFG------NGSDGKITYEDVNEML 241 (363)
T ss_pred HHHHHHHC------CCCCCCCCHHHHHHHH
T ss_conf 99999826------8878865789999983