>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..

Probab=100.00 E-value=0 Score=2162.47 Aligned_cols=750 Identities=55% Similarity=0.894 Sum_probs=717.4 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCCCCC------CCC Q ss_conf 43899999999999999828995119999999820746899999859-99899999999996413654577------888 Q gi|254780163|r 4 FSENLEKVLHQALVLANERNHEYATLEHLLLALIDDSDAAIVMLSCN-VDLKVLKNNLLNYIDNDSSNKLK------NGF 76 (798) Q Consensus 4 fS~~a~~vL~~A~~lAk~~~H~~Vt~EHLLLaLL~d~~~~~iL~~~g-iD~~~Lk~~Le~~L~~~~~~~~~------~~~ 76 (798) T Consensus 1 ~~~~l~~~L~~A~~~AK~~~HEf~T~EH~Llal~~~~~~~~il~~cgd~d~~~L~~~L~~yl~~~~~~~~~~qlGyGg~~ 80 (774) T TIGR02639 1 ISKELERILSEALEEAKERRHEFVTLEHLLLALLDDNEAIEILEECGDGDVELLRKKLEDYLEENLEVLEEEQLGYGGSE 80 (774) T ss_pred CCHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC T ss_conf 98789999999999998618942438999999703767899998533311899999999987513887760224468886 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 67764698999999999999998099812599987878737742999999984999899999998300000001112110 Q gi|254780163|r 77 RVECKPTSSFQRVVQRAVLHVQSTGRGIVTGANILVALFSEPDSHATYFLQEQEMTLYDAVNFISHGISKRKEFANFQSK 156 (798) Q Consensus 77 ~~ei~~S~~l~rVL~~A~~~A~~~G~~~I~~eHLLLALL~e~ds~a~~iL~~~gis~~~v~~~i~~~~~~~~~~~~~~~~ 156 (798) T Consensus 81 ~~ep~~T~g~~~Viq~A~~h~~s~~~~~~~~gD~Lvalf~E~~S~a~Y~Lk~qgi~Rl~~~~~ish~i~~~~~~~~~~~~ 160 (774) T TIGR02639 81 EEEPEQTVGVQRVIQRALLHVKSAGKKEIDIGDLLVALFDEEDSHASYFLKSQGITRLDILNYISHGISKDDKKDQLGEE 160 (774) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHEECCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCC T ss_conf 55630014478999999998531488602311100111027861310203321786999999741455457875633122 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC Q ss_conf 24432100000124444444555544553035654425887754861122217899999999862267787489667641 Q gi|254780163|r 157 LNVDGSSAGSDGEGFVNDYQAKTDLNLFPALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGV 236 (798) Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LdkFg~DLTe~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gv 236 (798) T Consensus 161 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~aL~~yt~~Lt~~A~~GkiDPLIGRE~EleRtiQvLCRR~KNNPl~VGEPGV 240 (774) T TIGR02639 161 AAEEEEELQEEKEDSAREEDTDKAKKQQDALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGV 240 (774) T ss_pred CCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCC T ss_conf 23420143146777876656652004656998841548999860887873456688742333203456788720448886 Q ss_pred HHHHHHHHHHHHHHCC-CCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCE-EEEECCHHHHHCCCCC Q ss_conf 1668999999998548-9883452014455404675306343123789999999872038983-9997361663015544 Q gi|254780163|r 237 GKTAIAEGFAKQIVDG-MVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANA-ILYIDEIHTLVGAGSA 314 (798) Q Consensus 237 Gktaive~la~~i~~~-~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~-ilfideih~ligag~~ 314 (798) T Consensus 241 GKTAI~EGLA~~I~~~~kvPe~Lkn~~IY~LDmG~LLAGTKYRGDFE~RLK~V~~Ei~~~~~anILFIDEIHTIVGAGAT 320 (774) T TIGR02639 241 GKTAIVEGLAQRIAEGQKVPEVLKNAKIYSLDMGTLLAGTKYRGDFEERLKAVVSEIEKEPNANILFIDEIHTIVGAGAT 320 (774) T ss_pred CHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCC T ss_conf 44899999999864156467002478345404345641024542478999999999852899954664110103317878 Q ss_pred CCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCH Q ss_conf 43447778888766302660388730489999985201114320014430687868999999861276654103512111 Q gi|254780163|r 315 SGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKE 394 (798) Q Consensus 315 ~g~~~d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~ 394 (798) T Consensus 321 SGGsmDASNLLKPaL~~G~iRCIGsTTy~EY~~~FeKDrALsRRFQKIDv~EPs~eet~~ILkGLk~~YE~fH~V~Y~~e 400 (774) T TIGR02639 321 SGGSMDASNLLKPALASGKIRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEQYEEFHHVKYSDE 400 (774) T ss_pred CCHHHHHHHHHHHHHHCCCEEEECCCCHHHHHCHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCEECCHH T ss_conf 75155244321125307877862265248641110102021654233117957888999999865542013250113869 Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CCHHHHHHHHHHCCCCCCHHHH Q ss_conf 78999998654201555646798899865333321144322113--------------6578999866310245310111 Q gi|254780163|r 395 AIRAAVQLSVRHFTSRKLPDKAIDVIDEAGASQILQPLSKRRKF--------------ITEKDIKKTIASMNRSIHTTSF 460 (798) Q Consensus 395 al~~av~ls~ryi~~r~lPdkAidllDea~a~~~~~~~~~~~~~--------------~~~~~i~~~~~~~~~gip~~~~ 460 (798) T Consensus 401 al~~Av~LS~ryI~DRfLPDKAIDviDEaGA~~~l~~~~~~~~~eadekGleetalPev~~~diE~vvak~a-~iP~~~~ 479 (774) T TIGR02639 401 ALEAAVELSARYINDRFLPDKAIDVIDEAGAAFRLRAKAKKKANEADEKGLEETALPEVNVKDIEEVVAKMA-KIPVKTV 479 (774) T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHH-CCCCEEE T ss_conf 999999998886025789854322889999999971202776432011253000478785444999998871-8994154 Q ss_pred HCCH-HHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 0011-233421000024665345899999999987752044565787406886143200388999998730477337720 Q gi|254780163|r 461 SRDD-DSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFD 539 (798) Q Consensus 461 ~~~~-~~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~d 539 (798) T Consensus 480 s~ddD~~~L~~L~~~L~~kIfGQD~AI~~lv~aiK~SrAGl~~~nkP~GSFLF~GPTGVGKTElak~LA~~LGv~l~RFD 559 (774) T TIGR02639 480 SSDDDREKLKNLEKELKAKIFGQDEAIEQLVSAIKRSRAGLGEPNKPVGSFLFVGPTGVGKTELAKQLAEELGVHLLRFD 559 (774) T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCHHCCCC T ss_conf 26447988720447630131515899999999999987424778881688886479896257889999997082001046 Q ss_pred HHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEE Q ss_conf 68861246530110478000256444310035551585177740445502899999999877750217799776125429 Q gi|254780163|r 540 MSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVI 619 (798) Q Consensus 540 msey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~i 619 (798) T Consensus 560 MSEYmEKHTVsRLIGsPPGYVGfEqGGLLT~AvrK~P~cVLLLDEIEKAHpDI~NILLQVMD~AtLTDN~GrKaDFRNVI 639 (774) T TIGR02639 560 MSEYMEKHTVSRLIGSPPGYVGFEQGGLLTDAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVI 639 (774) T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEECCEE T ss_conf 50446899998741688885131677721223312885354234666631336667876633543405888576311368 Q ss_pred EEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEE Q ss_conf 99942421455330368988211148899999872887881776828962889999999999999999999998669889 Q gi|254780163|r 620 LIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISF 699 (798) Q Consensus 620 ii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l 699 (798) T Consensus 640 LIMTSNaGa~E~~~~~iGF~~~~~~~~~~~Aikk~F~PEFRNRLDaii~F~~L~~~~~~~i~~K~l~el~~~L~eK~v~l 719 (774) T TIGR02639 640 LIMTSNAGAREMSKNPIGFGGERVEDKSEKAIKKLFSPEFRNRLDAIIAFNDLSEEVAEKIVKKFLDELQKQLNEKNVEL 719 (774) T ss_pred EEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCEEE T ss_conf 88403700102367764425554123348889731587420133464416998899999999999999997553065378 Q ss_pred EECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE Q ss_conf 99889999999718981015326799999862359999996296768884899996 Q gi|254780163|r 700 HFSEEVINWLVSHGYDVKMGARPLERIIKEHVKVPLADEILFGKLKKGGGVVKVSL 755 (798) Q Consensus 700 ~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~g~~~~~v~~ 755 (798) T Consensus 720 ~l~~~a~~~LA~KGY~~efGARpl~R~I~~~i~~~L~dEILFG~LKkGG~-v~~~~ 774 (774) T TIGR02639 720 ELTDDAIKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEILFGKLKKGGE-VKISL 774 (774) T ss_pred EECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCE-EEEEC T ss_conf 76478999998636781105544899988741257654420570016726-88738

HHsearch alignment for GI: 254780163 and conserved domain: TIGR02639