HHsearch alignment for GI: 254780163 and conserved domain: TIGR02858
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=97.10 E-value=0.0064 Score=40.14 Aligned_cols=106 Identities=28% Similarity=0.410 Sum_probs=79.0
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCH----HHHH---------HHHHHHHH
Q ss_conf 8748966764116689999999985489883452014455404675306343123----7899---------99999872
Q gi|254780163|r 226 NNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGD----FEER---------IKKIVKEI 292 (798)
Q Consensus 226 Nn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~----fe~r---------~~~~~~~~ 292 (798)
T Consensus 124 ~NTLiIsPPq~GKTTlLRDlaR~~StG~~~~~~~g~KVgivDERSEIAgC-~~GvPQ~~vG~RtDVLD~CPKAEGmMM~i 202 (282)
T TIGR02858 124 LNTLIISPPQCGKTTLLRDLARILSTGISKLGLKGKKVGIVDERSEIAGC-VNGVPQLDVGIRTDVLDGCPKAEGMMMLI 202 (282)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHH-CCCCCCCCCCCCEEECCCCCHHHHHHHHH
T ss_conf 67888868898851048889888607854246899746998432465654-58824144676067517885378999999
Q ss_pred CCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEE---ECCHHH
Q ss_conf 0389839997361663015544434477788887663026603887---304899
Q gi|254780163|r 293 ESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIG---STTYSE 344 (798)
Q Consensus 293 ~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~Ig---atT~~e 344 (798)
T Consensus 203 RSMSP~Viv~DEI------Gr----~ED~~Al~e-A~naG-V~~I~TaHg~~~~D 245 (282)
T TIGR02858 203 RSMSPDVIVVDEI------GR----EEDVEALLE-ALNAG-VSVIATAHGRDLED 245 (282)
T ss_pred HCCCCCEEEEECC------CC----HHHHHHHHH-HHCCC-CEEEEEECCCCHHH
T ss_conf 7069857998148------89----533899999-86167-56887640488126