HHsearch alignment for GI: 254780163 and conserved domain: TIGR02858

>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=97.10  E-value=0.0064  Score=40.14  Aligned_cols=106  Identities=28%  Similarity=0.410  Sum_probs=79.0

Q ss_pred             CCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCH----HHHH---------HHHHHHHH
Q ss_conf             8748966764116689999999985489883452014455404675306343123----7899---------99999872
Q gi|254780163|r  226 NNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGD----FEER---------IKKIVKEI  292 (798)
Q Consensus       226 Nn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~----fe~r---------~~~~~~~~  292 (798)
T Consensus       124 ~NTLiIsPPq~GKTTlLRDlaR~~StG~~~~~~~g~KVgivDERSEIAgC-~~GvPQ~~vG~RtDVLD~CPKAEGmMM~i  202 (282)
T TIGR02858       124 LNTLIISPPQCGKTTLLRDLARILSTGISKLGLKGKKVGIVDERSEIAGC-VNGVPQLDVGIRTDVLDGCPKAEGMMMLI  202 (282)
T ss_pred             EEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHH-CCCCCCCCCCCCEEECCCCCHHHHHHHHH
T ss_conf             67888868898851048889888607854246899746998432465654-58824144676067517885378999999


Q ss_pred             CCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEE---ECCHHH
Q ss_conf             0389839997361663015544434477788887663026603887---304899
Q gi|254780163|r  293 ESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIG---STTYSE  344 (798)
Q Consensus       293 ~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~Ig---atT~~e  344 (798)
T Consensus       203 RSMSP~Viv~DEI------Gr----~ED~~Al~e-A~naG-V~~I~TaHg~~~~D  245 (282)
T TIGR02858       203 RSMSPDVIVVDEI------GR----EEDVEALLE-ALNAG-VSVIATAHGRDLED  245 (282)
T ss_pred             HCCCCCEEEEECC------CC----HHHHHHHHH-HHCCC-CEEEEEECCCCHHH
T ss_conf             7069857998148------89----533899999-86167-56887640488126