HHsearch alignment for GI: 254780163 and conserved domain: TIGR02880
>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=98.23 E-value=0.0001 Score=52.97 Aligned_cols=215 Identities=17% Similarity=0.309 Sum_probs=146.8
Q ss_pred CHHHHHHHCHHHHHHHHHHH-------HHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH-------HCCCCEEEE
Q ss_conf 00246653458999999999-------8775204456578740688614320038899999873-------047733772
Q gi|254780163|r 473 KNLGTVVYGQEEAIKKLSSS-------IKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAF-------ALGVQLLRF 538 (798)
Q Consensus 473 ~~l~~~v~GQ~~ai~~v~~~-------i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~-------~~~~~lir~ 538 (798)
T Consensus 18 ~~l~~~l~Gl~Pvk~r~~~~a~lllv~~~r~~~~l~~-~~P~lhm~ftG~PGtGkttva~~m~~~l~~lGy~r~G~~~~~ 96 (284)
T TIGR02880 18 DQLDRELIGLKPVKTRIREIAALLLVERLRQKLGLAS-AAPSLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSV 96 (284)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 9876762164158899999999999999998742210-488326775168987248999999999987154003626785
Q ss_pred EHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCC---------HHHHHHHHHHHHHHHCCCCC
Q ss_conf 068861246530110478000256444310035551585177740445502---------89999999987775021779
Q gi|254780163|r 539 DMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSH---------PDVLNILLQIMDYGILTDQS 609 (798)
Q Consensus 539 dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh---------~~v~~~llqild~G~ltd~~ 609 (798)
T Consensus 97 t---------rddlvGq---y~GhtaP-ktke~lk~a~GGvlfideayyly~P~nerdyG~eaieillq~men~------ 157 (284)
T TIGR02880 97 T---------RDDLVGQ---YIGHTAP-KTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQ------ 157 (284)
T ss_pred E---------HHHHHHH---HHCCCCC-HHHHHHHHHCCCEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHCC------
T ss_conf 3---------0013112---2125772-2689998742873664220332177641022379999999987236------
Q ss_pred CCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHC--CHHHHCCCCEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 9776125429999424214553303689882111488999998728--87881776828962889999999999999999
Q gi|254780163|r 610 GKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFL--SPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMK 687 (798)
Q Consensus 610 Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f--~peflnRid~ii~F~~l~~~~~~~i~~~~l~~ 687 (798)
T Consensus 158 --r~---~lvvi~a-------------Gy---------~~rm~~f~~snPG~~sr~a~h~~fPdy~~~~l~~ia~~~l~~ 210 (284)
T TIGR02880 158 --RD---DLVVILA-------------GY---------KDRMDSFFESNPGLSSRVAHHVDFPDYSEEELLAIAELMLEE 210 (284)
T ss_pred --CC---CEEEEEE-------------CC---------HHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf --55---3788871-------------70---------788888751178624677643158887767899999998865
Q ss_pred HHHHHHHCCCEEEECHHHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999986698899988999999971898101-532679999986235999999
Q gi|254780163|r 688 LELQLQEKGISFHFSEEVINWLVSHGYDVKM-GARPLERIIKEHVKVPLADEI 739 (798)
Q Consensus 688 l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~-GAR~l~r~i~~~i~~~la~~i 739 (798)
T Consensus 211 ~~y~~~-----~~~~~~~~~y~~~r~~~P~f~nars~rna~dr~rlr~a~rl~ 258 (284)
T TIGR02880 211 QQYRLS-----AEAEEALADYIALRRKQPFFANARSIRNALDRARLRQANRLL 258 (284)
T ss_pred HHCCHH-----HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 412111-----889999999999863178314678899999889888899999