HHsearch alignment for GI: 254780163 and conserved domain: TIGR02880

>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=98.23  E-value=0.0001  Score=52.97  Aligned_cols=215  Identities=17%  Similarity=0.309  Sum_probs=146.8

Q ss_pred             CHHHHHHHCHHHHHHHHHHH-------HHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH-------HCCCCEEEE
Q ss_conf             00246653458999999999-------8775204456578740688614320038899999873-------047733772
Q gi|254780163|r  473 KNLGTVVYGQEEAIKKLSSS-------IKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAF-------ALGVQLLRF  538 (798)
Q Consensus       473 ~~l~~~v~GQ~~ai~~v~~~-------i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~-------~~~~~lir~  538 (798)
T Consensus        18 ~~l~~~l~Gl~Pvk~r~~~~a~lllv~~~r~~~~l~~-~~P~lhm~ftG~PGtGkttva~~m~~~l~~lGy~r~G~~~~~   96 (284)
T TIGR02880        18 DQLDRELIGLKPVKTRIREIAALLLVERLRQKLGLAS-AAPSLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSV   96 (284)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf             9876762164158899999999999999998742210-488326775168987248999999999987154003626785


Q ss_pred             EHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCC---------HHHHHHHHHHHHHHHCCCCC
Q ss_conf             068861246530110478000256444310035551585177740445502---------89999999987775021779
Q gi|254780163|r  539 DMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSH---------PDVLNILLQIMDYGILTDQS  609 (798)
Q Consensus       539 dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh---------~~v~~~llqild~G~ltd~~  609 (798)
T Consensus        97 t---------rddlvGq---y~GhtaP-ktke~lk~a~GGvlfideayyly~P~nerdyG~eaieillq~men~------  157 (284)
T TIGR02880        97 T---------RDDLVGQ---YIGHTAP-KTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQ------  157 (284)
T ss_pred             E---------HHHHHHH---HHCCCCC-HHHHHHHHHCCCEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHCC------
T ss_conf             3---------0013112---2125772-2689998742873664220332177641022379999999987236------


Q ss_pred             CCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHC--CHHHHCCCCEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             9776125429999424214553303689882111488999998728--87881776828962889999999999999999
Q gi|254780163|r  610 GKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFL--SPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMK  687 (798)
Q Consensus       610 Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f--~peflnRid~ii~F~~l~~~~~~~i~~~~l~~  687 (798)
T Consensus       158 --r~---~lvvi~a-------------Gy---------~~rm~~f~~snPG~~sr~a~h~~fPdy~~~~l~~ia~~~l~~  210 (284)
T TIGR02880       158 --RD---DLVVILA-------------GY---------KDRMDSFFESNPGLSSRVAHHVDFPDYSEEELLAIAELMLEE  210 (284)
T ss_pred             --CC---CEEEEEE-------------CC---------HHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             --55---3788871-------------70---------788888751178624677643158887767899999998865


Q ss_pred             HHHHHHHCCCEEEECHHHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999986698899988999999971898101-532679999986235999999
Q gi|254780163|r  688 LELQLQEKGISFHFSEEVINWLVSHGYDVKM-GARPLERIIKEHVKVPLADEI  739 (798)
Q Consensus       688 l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~-GAR~l~r~i~~~i~~~la~~i  739 (798)
T Consensus       211 ~~y~~~-----~~~~~~~~~y~~~r~~~P~f~nars~rna~dr~rlr~a~rl~  258 (284)
T TIGR02880       211 QQYRLS-----AEAEEALADYIALRRKQPFFANARSIRNALDRARLRQANRLL  258 (284)
T ss_pred             HHCCHH-----HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             412111-----889999999999863178314678899999889888899999