HHsearch alignment for GI: 254780163 and conserved domain: TIGR02880
>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=97.27 E-value=0.009 Score=39.06 Aligned_cols=178 Identities=22% Similarity=0.340 Sum_probs=122.4
Q ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC-----CCE----EEECCCCCHHHHHHHHHHHHHHCCCCCH
Q ss_conf 0356544258877548611222178999999998622677-----874----8966764116689999999985489883
Q gi|254780163|r 186 ALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSK-----NNP----LYVGDPGVGKTAIAEGFAKQIVDGMVPD 256 (798)
Q Consensus 186 ~LdkFg~DLTe~AreGKLDPVIGRd~EI~riiqIL~RR~K-----Nn~----~lvG~~gvGktaive~la~~i~~~~vp~ 256 (798)
T Consensus 16 ~l~~l~~~l~G------l~Pvk~r~~~~a~lllv~~~r~~~~l~~~~P~lhm~ftG~PGtGkttva~~m~~~l~~l---G 86 (284)
T TIGR02880 16 VLDQLDRELIG------LKPVKTRIREIAALLLVERLRQKLGLASAAPSLHMSFTGNPGTGKTTVALRMAQILHRL---G 86 (284)
T ss_pred HHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC---C
T ss_conf 99987676216------41588999999999999999987422104883267751689872489999999999871---5
Q ss_pred HHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHC--CCCE
Q ss_conf 45201445540467530634312378999999987203898399973616630155444344777888876630--2660
Q gi|254780163|r 257 ILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALS--SGAV 334 (798)
Q Consensus 257 ~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~--rg~~ 334 (798)
T Consensus 87 y~r~G~~~~~trddlvG--qy~GhtaPktke~lk~a~--G-Gvlfideayyly~P~nerdyG~eaieillq~men~r~~l 161 (284)
T TIGR02880 87 YVRKGHLVSVTRDDLVG--QYIGHTAPKTKEVLKRAM--G-GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDL 161 (284)
T ss_pred CCCCCCEEEEEHHHHHH--HHHCCCCCHHHHHHHHHC--C-CEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCE
T ss_conf 40036267853001311--221257722689998742--8-736642203321776410223799999999872365537
Q ss_pred EEEEECCHHHHHHHHHCCHHHHHHC-EEEEECCCCHHHHHHHHH
Q ss_conf 3887304899999852011143200-144306878689999998
Q gi|254780163|r 335 RCIGSTTYSEYRQFFEKDKALVRRF-QKIDVSEPSIEDAIEIVK 377 (798)
Q Consensus 335 ~~IgatT~~ey~~~~e~d~al~rrF-~~i~v~ep~~~~~~~iL~ 377 (798)
T Consensus 162 vvi~aGy~~rm~~f~~snPG~~sr~a~h~~fPdy~~~~l~~ia~ 205 (284)
T TIGR02880 162 VVILAGYKDRMDSFFESNPGLSSRVAHHVDFPDYSEEELLAIAE 205 (284)
T ss_pred EEEEECCHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 88871707888887511786246776431588877678999999