HHsearch alignment for GI: 254780163 and conserved domain: TIGR02915
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=98.30 E-value=7.8e-05 Score=53.88 Aligned_cols=247 Identities=18% Similarity=0.292 Sum_probs=172.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHCC---HHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCC
Q ss_conf 789998663102453101110011233421000---02466534589999999998775204456578740688614320
Q gi|254780163|r 441 EKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEK---NLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTG 517 (798)
Q Consensus 441 ~~~i~~~~~~~~~gip~~~~~~~~~~~l~~l~~---~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptG 517 (798)
T Consensus 106 d~d~L~liv~RA--f~L~~Le~ENRr-L~~~~~~Gst~~~Gli~~~~~m~kic~tIekv----A~sd--~-TvllLGESG 175 (451)
T TIGR02915 106 DPDVLKLIVDRA--FRLYTLETENRR-LQSALGGGSTALEGLITSSPGMQKICRTIEKV----APSD--I-TVLLLGESG 175 (451)
T ss_pred CHHHHHHHHHHH--HHHHHHHHHHHH-HHHCCCCCCCCCCCEEECCCCHHHHHHHHHHH----CCCC--C-EEEEECCCC
T ss_conf 578999999998--888888887699-87406887410365220685067898886521----2000--0-130104667
Q ss_pred HHHHHHHHHHHHHC---CCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCC-------EEEEECCHHH
Q ss_conf 03889999987304---7733772068861246530110478000256444310035551585-------1777404455
Q gi|254780163|r 518 VGKTEISKQLAFAL---GVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPY-------SVVLLDEIEK 587 (798)
Q Consensus 518 vGKTelak~la~~~---~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~-------sVvl~DEiEK 587 (798)
T Consensus 176 TGKEV~ArA~H~~S~R~~~~FVAINCAAIPEnLLEsELF-------GyEK-GAFTGA~k~T~GKIE~A~~GTLFLDEIGD 247 (451)
T TIGR02915 176 TGKEVLARALHELSDRKDKRFVAINCAAIPENLLESELF-------GYEK-GAFTGAVKQTLGKIEYAHGGTLFLDEIGD 247 (451)
T ss_pred CHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHH-------CCCC-HHHHHHHCCCCCCEEEECCCCCCCCCHHC
T ss_conf 117899989842057897773444167457524667760-------3410-12422003477616750688301111220
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCE---ECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHH-HHHHCCHHHHCCC
Q ss_conf 0289999999987775021779977---61254299994242145533036898821114889999-9872887881776
Q gi|254780163|r 588 SHPDVLNILLQIMDYGILTDQSGKK---ISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEA-LRNFLSPEFLNRL 663 (798)
Q Consensus 588 Ah~~v~~~llqild~G~ltd~~Gr~---vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~-l~~~f~peflnRi 663 (798)
T Consensus 248 LP~~LQAKLLRFLQErVIER~GGR~eIPVD---VRvvCATnq-------------------dL~~~i~eg~FREDLfYRl 305 (451)
T TIGR02915 248 LPLNLQAKLLRFLQERVIERLGGREEIPVD---VRVVCATNQ-------------------DLKKMIAEGTFREDLFYRL 305 (451)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCC---EEEEECCCH-------------------HHHHHHHCCCCCCCCEEEE
T ss_conf 676689999987546663105887245614---267503224-------------------6899985489720001346
Q ss_pred CEEE-ECCCC--CHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 8289-62889--99999999999999999999866988999889999999718981015326799999862
Q gi|254780163|r 664 DSII-PFFPL--SSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHV 731 (798)
Q Consensus 664 d~ii-~F~~l--~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i 731 (798)
T Consensus 306 ~Eisi~iPPLR~R~gDa~lLA~~Fl~rf~~~~k--~~~~~F~~DA~~ale~h~WPGN--vRELEN~vKRAV 372 (451)
T TIGR02915 306 AEISITIPPLRDRDGDAVLLANAFLERFARELK--RKAKGFTDDALRALEAHKWPGN--VRELENKVKRAV 372 (451)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHCCCCCCC--HHHHHCHHHEEE
T ss_conf 667862588998601899999999998878733--0216606999999760699884--154403002134