HHsearch alignment for GI: 254780163 and conserved domain: TIGR03158
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=96.16 E-value=0.11 Score=31.36 Aligned_cols=51 Identities=25% Similarity=0.240 Sum_probs=25.2
Q ss_pred EECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 966764116689999999985489883452014455404675306343123789999999872038
Q gi|254780163|r 230 YVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESY 295 (798)
Q Consensus 230 lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~ 295 (798)
T Consensus 19 itAPTgsGKT~Aa~lp---~l~~~------~~~lyi~P~kAL~~------Dq~~~l~~~~~~~~~~ 69 (357)
T TIGR03158 19 NTAPTGAGKTLAWLTP---LLHGE------NDTIALYPTNALIE------DQTEAIKEFVDVFKPE 69 (357)
T ss_pred EECCCCCCHHHHHHHH---HHHCC------CCEEEECCHHHHHH------HHHHHHHHHHHHHCCC
T ss_conf 9899985699999999---97389------87999777899999------9999999999874423