HHsearch alignment for GI: 254780163 and conserved domain: TIGR03420
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.95 E-value=2.1e-07 Score=72.33 Aligned_cols=161 Identities=15% Similarity=0.210 Sum_probs=89.5
Q ss_pred HHHHHHCCCCCCEE-EECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99986226778748-96676411668999999998548988345201445540467530634312378999999987203
Q gi|254780163|r 216 TIQILCRRSKNNPL-YVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIES 294 (798)
Q Consensus 216 iiqIL~RR~KNn~~-lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~ 294 (798)
T Consensus 29 l~~~~~~-~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~-------~~~~~yl~~~~----------~~~~~~~~l~~l~~ 90 (226)
T TIGR03420 29 LRQLAAG-KGDRFLYLWGESGSGKSHLLQAACAAAEER-------GKSAIYLPLAE----------LAQADPEVLEGLEQ 90 (226)
T ss_pred HHHHHHC-CCCCEEEEECCCCCCHHHHHHHHHHHHHCC-------CCCEEEECHHH----------HHHHHHHHHHHCCC
T ss_conf 9987646-688869998999998899999999998626-------99579952999----------87753999972744
Q ss_pred CCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHC---EEEEECCCCHHH
Q ss_conf 89839997361663015544434477788887663026603887304899999852011143200---144306878689
Q gi|254780163|r 295 YANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRF---QKIDVSEPSIED 371 (798)
Q Consensus 295 ~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF---~~i~v~ep~~~~ 371 (798)
T Consensus 91 -~-d~l~iDDi~~i~~~~~~e~---~lF~l~N~~~~~~~~ilits~~~p~~l~~~l~d--L~SRl~~~~~~~I~~pdd~~ 163 (226)
T TIGR03420 91 -A-DLVCLDDVEAIAGQPEWQE---ALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPD--LRTRLAWGLVFQLPPLSDEE 163 (226)
T ss_pred -C-CEEEEECHHHHCCCHHHHH---HHHHHHHHHHHHCCEEEEECCCCHHHCCCCHHH--HHHHHHCCCEEECCCCCHHH
T ss_conf -8-9999966333437837899---999999999865282898678882320320177--99999688568527999999
Q ss_pred HHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHH
Q ss_conf 9999986127665410351211178999998654
Q gi|254780163|r 372 AIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVR 405 (798)
Q Consensus 372 ~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~r 405 (798)
T Consensus 164 ~~~iL~k~----~~~r~i~i~~~vi~yl~~r~~R 193 (226)
T TIGR03420 164 KIAALQSR----AARRGLQLPDEVADYLLRHGSR 193 (226)
T ss_pred HHHHHHHH----HHHCCCCCCHHHHHHHHHHCCC
T ss_conf 99999999----9985998899999999986379