HHsearch alignment for GI: 254780163 and conserved domain: TIGR03420
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.78 E-value=5.8e-07 Score=69.21 Aligned_cols=157 Identities=18% Similarity=0.373 Sum_probs=100.2
Q ss_pred EEEECCCCHHHHHHHHHHHH---HCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHH
Q ss_conf 88614320038899999873---047733772068861246530110478000256444310035551585177740445
Q gi|254780163|r 510 YVFSGPTGVGKTEISKQLAF---ALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIE 586 (798)
Q Consensus 510 flf~GptGvGKTelak~la~---~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiE 586 (798)
T Consensus 41 l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~~~~~~~-~~l-----------------~~l--~~~d~l~iDDi~ 100 (226)
T TIGR03420 41 LYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADP-EVL-----------------EGL--EQADLVCLDDVE 100 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHH-HHH-----------------HHC--CCCCEEEEECHH
T ss_conf 999899999889999999999862699579952999877539-999-----------------727--448999996633
Q ss_pred HC--CHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCC-
Q ss_conf 50--289999999987775021779977612542999942421455330368988211148899999872887881776-
Q gi|254780163|r 587 KS--HPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRL- 663 (798)
Q Consensus 587 KA--h~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRi- 663 (798)
T Consensus 101 ~i~~~~~~e~~lF~l~N--~~~~~--------~~~ilits~~~p~~l---------------------~~~l~dL~SRl~ 149 (226)
T TIGR03420 101 AIAGQPEWQEALFHLYN--RVREA--------GGRLLIAGRAAPAQL---------------------PLRLPDLRTRLA 149 (226)
T ss_pred HHCCCHHHHHHHHHHHH--HHHHH--------CCEEEEECCCCHHHC---------------------CCCHHHHHHHHH
T ss_conf 34378378999999999--99865--------282898678882320---------------------320177999996
Q ss_pred -CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf -828962889999999999999999999998669889998899999997189810153267999998
Q gi|254780163|r 664 -DSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKE 729 (798)
Q Consensus 664 -d~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~ 729 (798)
T Consensus 150 ~~~~~~I~~pdd~~~~~iL~k~~-------~~r~i--~i~~~vi~yl~~r~~R-~~--~~l~~~l~~ 204 (226)
T TIGR03420 150 WGLVFQLPPLSDEEKIAALQSRA-------ARRGL--QLPDEVADYLLRHGSR-DM--GSLMALLDA 204 (226)
T ss_pred CCCEEECCCCCHHHHHHHHHHHH-------HHCCC--CCCHHHHHHHHHHCCC-CH--HHHHHHHHH
T ss_conf 88568527999999999999999-------98599--8899999999986379-89--999999999