HHsearch alignment for GI: 254780163 and conserved domain: TIGR03499

Probab=97.59  E-value=0.00019  Score=51.19  Aligned_cols=74  Identities=31%  Similarity=0.509  Sum_probs=43.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHH--HHC-----CCCEEEEEH---HHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHH-CC
Q ss_conf             068861432003889999987--304-----773377206---8861246530110478000256444310035551-58
Q gi|254780163|r  508 GCYVFSGPTGVGKTEISKQLA--FAL-----GVQLLRFDM---SEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQ-NP  576 (798)
Q Consensus       508 g~flf~GptGvGKTelak~la--~~~-----~~~lir~dm---sey~e~~~vs~LiGappGYvG~~egg~Lte~vr~-~P  576 (798)
T Consensus       195 ~vi~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyRigA~eQLk~ya~il~vp~-~vv~~-~~~l~~~l~~~~~  272 (282)
T TIGR03499       195 GVIALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYRIGAVEQLKTYAKILGVPV-KVARD-PKELAKALERLRD  272 (282)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCEE-EEECC-HHHHHHHHHHCCC
T ss_conf             279997788875788999999999997389967999807776789999999999959748-99399-9999999986579


Q ss_pred             CEEEEEC
Q ss_conf             5177740
Q gi|254780163|r  577 YSVVLLD  583 (798)
Q Consensus       577 ~sVvl~D  583 (798)
T Consensus       273 ~d~IlID  279 (282)
T TIGR03499       273 KDLILID  279 (282)
T ss_pred             CCEEEEE
T ss_conf             8999981