HHsearch alignment for GI: 254780163 and conserved domain: cd00267
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.32 E-value=0.0099 Score=38.77 Aligned_cols=89 Identities=29% Similarity=0.430 Sum_probs=49.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHC--CCCEEEEEHHHHHC--CCCCCHHCCCCCHHCCCCCCCC-----CCHHHHHCCCE
Q ss_conf 068861432003889999987304--77337720688612--4653011047800025644431-----00355515851
Q gi|254780163|r 508 GCYVFSGPTGVGKTEISKQLAFAL--GVQLLRFDMSEYME--RHAVSRLIGAPPGYVGFGQGGI-----LADSVDQNPYS 578 (798)
Q Consensus 508 g~flf~GptGvGKTelak~la~~~--~~~lir~dmsey~e--~~~vs~LiGappGYvG~~egg~-----Lte~vr~~P~s 578 (798)
T Consensus 26 e~~~i~G~nGaGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~~~i----~~v~QLSgGqkqrv~iA~al~~~p-~ 100 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRI----GYVPQLSGGQRQRVALARALLLNP-D 100 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCC----CCCCCCCHHHHHHHHHHHHHHCCC-C
T ss_conf 79999878899989999999588479962899999999979999999406----087668869999999999997099-9
Q ss_pred EEEECCHHH-----CCHHHHHHHHHHHH
Q ss_conf 777404455-----02899999999877
Q gi|254780163|r 579 VVLLDEIEK-----SHPDVLNILLQIMD 601 (798)
Q Consensus 579 Vvl~DEiEK-----Ah~~v~~~llqild 601 (798)
T Consensus 101 ililDEPtsgLD~~~~~~l~~~i~~l~~ 128 (157)
T cd00267 101 LLLLDEPTSGLDPASRERLLELLRELAE 128 (157)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999698766899999999999999996