HHsearch alignment for GI: 254780163 and conserved domain: cd01121

>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.26  E-value=0.0094  Score=38.93  Aligned_cols=182  Identities=21%  Similarity=0.319  Sum_probs=108.9

Q ss_pred             CEEEE-CCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCC------------HHHHHHHHHHHHHC
Q ss_conf             74896-676411668999999998548988345201445540467530634312------------37899999998720
Q gi|254780163|r  227 NPLYV-GDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRG------------DFEERIKKIVKEIE  293 (798)
Q Consensus       227 n~~lv-G~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg------------~fe~r~~~~~~~~~  293 (798)
T Consensus        83 SvvLlgGePGIGKSTLLLQia~~la~~~-------~~vLYvSGEES~~QIk~RA~RLg~~~~~l~l~set~le~Il~~i~  155 (372)
T cd01121          83 SVILIGGDPGIGKSTLLLQVAARLAKRG-------GKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIE  155 (372)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCC-------CCEEEEECHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHH
T ss_conf             1799825998868899999999998639-------938998245678999989998587887727884356999999999


Q ss_pred             CCCCEEEEECCHHHHHCCC--CCCCCCC-----CHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHCCHHHHHHCEEEEEC
Q ss_conf             3898399973616630155--4443447-----77888876630266-03887304899999852011143200144306
Q gi|254780163|r  294 SYANAILYIDEIHTLVGAG--SASGISV-----DASNLLKPALSSGA-VRCIGSTTYSEYRQFFEKDKALVRRFQKIDVS  365 (798)
Q Consensus       294 ~~~~~ilfideih~ligag--~~~g~~~-----d~an~lkP~L~rg~-~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~  365 (798)
T Consensus       156 ~~kP~~lIIDSIQT~~~~~~~s~pG-svsQVReca~~L~~~AK~~~i~~~lVGHVTK~G---~iAGPkvLEHmVDtVl~f  231 (372)
T cd01121         156 ELKPDLVIIDSIQTVYSSELTSAPG-SVSQVRECTAELMRFAKERNIPIFIVGHVTKEG---SIAGPKVLEHMVDTVLYF  231 (372)
T ss_pred             HHCCCEEEEECHHHCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC---CCCCCHHHEEEEEEEEEE
T ss_conf             7199889995622020377677998-789999999999999986197399998762688---637740310021368875


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCE---ECCHHHHHHHHHHHHHCCCC--CCHHHHHHH
Q ss_conf             8786899999986127665410351---21117899999865420155--564679889
Q gi|254780163|r  366 EPSIEDAIEIVKGIKPYFEEHHQLR---YSKEAIRAAVQLSVRHFTSR--KLPDKAIDV  419 (798)
Q Consensus       366 ep~~~~~~~iL~~~~~~ye~~h~v~---~~~~al~~av~ls~ryi~~r--~lPdkAidl  419 (798)
T Consensus       232 Egd~~~~~R~LR~~KNRFG~t~EiGvFeM~~~GL~~V~nPS~~Fl~~~~~~~~Gs~v~~  290 (372)
T cd01121         232 EGDRHSEYRILRSVKNRFGSTNELGVFEMRENGLREVSNPSELFLSEREEDVPGSAVTV  290 (372)
T ss_pred             CCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCEECCCHHHHHHHCCCCCCCCCEEEE
T ss_conf             15776550356741156777540588873168705636856988626988888637998