HHsearch alignment for GI: 254780163 and conserved domain: cd01121
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.26 E-value=0.0094 Score=38.93 Aligned_cols=182 Identities=21% Similarity=0.319 Sum_probs=108.9
Q ss_pred CEEEE-CCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCC------------HHHHHHHHHHHHHC
Q ss_conf 74896-676411668999999998548988345201445540467530634312------------37899999998720
Q gi|254780163|r 227 NPLYV-GDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRG------------DFEERIKKIVKEIE 293 (798)
Q Consensus 227 n~~lv-G~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg------------~fe~r~~~~~~~~~ 293 (798)
T Consensus 83 SvvLlgGePGIGKSTLLLQia~~la~~~-------~~vLYvSGEES~~QIk~RA~RLg~~~~~l~l~set~le~Il~~i~ 155 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRG-------GKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC-------CCEEEEECHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHH
T ss_conf 1799825998868899999999998639-------938998245678999989998587887727884356999999999
Q ss_pred CCCCEEEEECCHHHHHCCC--CCCCCCC-----CHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHCCHHHHHHCEEEEEC
Q ss_conf 3898399973616630155--4443447-----77888876630266-03887304899999852011143200144306
Q gi|254780163|r 294 SYANAILYIDEIHTLVGAG--SASGISV-----DASNLLKPALSSGA-VRCIGSTTYSEYRQFFEKDKALVRRFQKIDVS 365 (798)
Q Consensus 294 ~~~~~ilfideih~ligag--~~~g~~~-----d~an~lkP~L~rg~-~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ 365 (798)
T Consensus 156 ~~kP~~lIIDSIQT~~~~~~~s~pG-svsQVReca~~L~~~AK~~~i~~~lVGHVTK~G---~iAGPkvLEHmVDtVl~f 231 (372)
T cd01121 156 ELKPDLVIIDSIQTVYSSELTSAPG-SVSQVRECTAELMRFAKERNIPIFIVGHVTKEG---SIAGPKVLEHMVDTVLYF 231 (372)
T ss_pred HHCCCEEEEECHHHCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC---CCCCCHHHEEEEEEEEEE
T ss_conf 7199889995622020377677998-789999999999999986197399998762688---637740310021368875
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCE---ECCHHHHHHHHHHHHHCCCC--CCHHHHHHH
Q ss_conf 8786899999986127665410351---21117899999865420155--564679889
Q gi|254780163|r 366 EPSIEDAIEIVKGIKPYFEEHHQLR---YSKEAIRAAVQLSVRHFTSR--KLPDKAIDV 419 (798)
Q Consensus 366 ep~~~~~~~iL~~~~~~ye~~h~v~---~~~~al~~av~ls~ryi~~r--~lPdkAidl 419 (798)
T Consensus 232 Egd~~~~~R~LR~~KNRFG~t~EiGvFeM~~~GL~~V~nPS~~Fl~~~~~~~~Gs~v~~ 290 (372)
T cd01121 232 EGDRHSEYRILRSVKNRFGSTNELGVFEMRENGLREVSNPSELFLSEREEDVPGSAVTV 290 (372)
T ss_pred CCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCEECCCHHHHHHHCCCCCCCCCEEEE
T ss_conf 15776550356741156777540588873168705636856988626988888637998