HHsearch alignment for GI: 254780163 and conserved domain: cd03115
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.28 E-value=0.00054 Score=47.84 Aligned_cols=31 Identities=35% Similarity=0.431 Sum_probs=19.2
Q ss_pred EEEEECCCCHHHHHHHHHHH-----HHCCCCEEEEE
Q ss_conf 68861432003889999987-----30477337720
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLA-----FALGVQLLRFD 539 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la-----~~~~~~lir~d 539 (798)
T Consensus 2 Vi~lvGptGvGKTTTiaKLA~~~~~~~~kV~lit~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 999989999988999999999999769928999748