HHsearch alignment for GI: 254780163 and conserved domain: cd03222
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.59 E-value=0.028 Score=35.51 Aligned_cols=84 Identities=25% Similarity=0.317 Sum_probs=47.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHC--CCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCC-----CCHHHHHCCCEEEE
Q ss_conf 68861432003889999987304--773377206886124653011047800025644431-----00355515851777
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLAFAL--GVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGI-----LADSVDQNPYSVVL 581 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la~~~--~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~-----Lte~vr~~P~sVvl 581 (798)
T Consensus 27 iv~ilGpNGaGKSTllk~i~G~l~p~~G~i~~~g------~~~----~~~pq~~~L-SGGqrQRv~iAral~~~p-~lll 94 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDG------ITP----VYKPQYIDL-SGGELQRVAIAAALLRNA-TFYL 94 (177)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECC------CCE----ECCCCCCCC-CHHHHHHHHHHHHHHCCC-CEEE
T ss_conf 9999899999999999999688678899466668------612----215551507-989999999999982399-9999
Q ss_pred ECCHHH-----CCHHHHHHHHHHHHHHH
Q ss_conf 404455-----02899999999877750
Q gi|254780163|r 582 LDEIEK-----SHPDVLNILLQIMDYGI 604 (798)
Q Consensus 582 ~DEiEK-----Ah~~v~~~llqild~G~ 604 (798)
T Consensus 95 LDEPts~LD~~~r~~i~~~ik~l~~~~~ 122 (177)
T cd03222 95 FDEPSAYLDIEQRLNAARAIRRLSEEGK 122 (177)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 7488653899999999999999999659