HHsearch alignment for GI: 254780163 and conserved domain: cd03246

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.48  E-value=0.0061  Score=40.29  Aligned_cols=69  Identities=29%  Similarity=0.556  Sum_probs=38.7

Q ss_pred             CEE-EEECCCCHHHHHHHHHHH-HH---------CCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCC-------------
Q ss_conf             068-861432003889999987-30---------477337720688612465301104780002564-------------
Q gi|254780163|r  508 GCY-VFSGPTGVGKTEISKQLA-FA---------LGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFG-------------  563 (798)
Q Consensus       508 g~f-lf~GptGvGKTelak~la-~~---------~~~~lir~dmsey~e~~~vs~LiGappGYvG~~-------------  563 (798)
T Consensus        28 G~~vaIvG~sGsGKSTLl~ll~gl~~p~~G~i~i~g~~~~~~~~~~~~~------~i----~~v~Q~~~lf~~ti~eNiL   97 (173)
T cd03246          28 GESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGD------HV----GYLPQDDELFSGSIAENIL   97 (173)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC------CE----EEEECCCEECCCCHHHHCC
T ss_conf             9999999999980999999996666679998999999933289989842------08----9990888367775899767


Q ss_pred             CCCC-----CCHHHHHCCCEEEEECCHHH
Q ss_conf             4431-----00355515851777404455
Q gi|254780163|r  564 QGGI-----LADSVDQNPYSVVLLDEIEK  587 (798)
Q Consensus       564 egg~-----Lte~vr~~P~sVvl~DEiEK  587 (798)
T Consensus        98 SGGQkQRvalARal~~~p-~ililDEpts  125 (173)
T cd03246          98 SGGQRQRLGLARALYGNP-RILVLDEPNS  125 (173)
T ss_pred             CHHHHHHHHHHHHHHCCC-CEEEEECCCC
T ss_conf             699999999999982799-9999968766