HHsearch alignment for GI: 254780163 and conserved domain: cd03283
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.80 E-value=0.006 Score=40.35 Aligned_cols=126 Identities=22% Similarity=0.193 Sum_probs=71.5
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHC----CCCCHHHH----EEEEEEEEHH-HHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 7787489667641166899999999854----89883452----0144554046-7530634312378999999987203
Q gi|254780163|r 224 SKNNPLYVGDPGVGKTAIAEGFAKQIVD----GMVPDILL----GARIFSLDMG-NLIAGTRYRGDFEERIKKIVKEIES 294 (798)
Q Consensus 224 ~KNn~~lvG~~gvGktaive~la~~i~~----~~vp~~l~----~~~i~~ld~~-~l~ag~~~rg~fe~r~~~~~~~~~~ 294 (798)
T Consensus 24 ~~~~~iiTGpN~~GKSt~Lk~i~l~~ilaq~G~~vpa~~~~~~~~~i~t~i~~~d~~~~~~S~F~~E~~~~~~il~~~~~ 103 (199)
T cd03283 24 KKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKK 103 (199)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEHHHEEECCCEEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 98589998999986599999999999999968938624478233089999834751224535799999999999997248
Q ss_pred CCCEEEEECCHHHHHCCCCCCCCCCC-HHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHH
Q ss_conf 89839997361663015544434477-7888876630266038873048999998520111
Q gi|254780163|r 295 YANAILYIDEIHTLVGAGSASGISVD-ASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKA 354 (798)
Q Consensus 295 ~~~~ilfideih~ligag~~~g~~~d-~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~a 354 (798)
T Consensus 104 ~~~sLvliDEl----~~GT~~~eg~a~a~a~le~l~~-~~~~~iitTH~~~l~~~~~~~~~ 159 (199)
T cd03283 104 GEPVLFLLDEI----FKGTNSRERQAASAAVLKFLKN-KNTIGIISTHDLELADLLDLDSA 159 (199)
T ss_pred CCCEEEEECCC----CCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHHCCCCC
T ss_conf 98579961432----4799867899999999999986-79879998872898864324877