HHsearch alignment for GI: 254780163 and conserved domain: cd04153
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=95.83 E-value=0.052 Score=33.60 Aligned_cols=41 Identities=24% Similarity=0.234 Sum_probs=28.3
Q ss_pred HHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 99998622677874896676411668999999998548988
Q gi|254780163|r 215 RTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVP 255 (798)
Q Consensus 215 riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp 255 (798)
T Consensus 5 ~~~~~~~~~k~~KililG~~~sGKTsil~~l~~~~~~~~~p 45 (174)
T cd04153 5 SLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSP 45 (174)
T ss_pred HHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 99987658977999999899998899999997399277167