Query gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 798
No_of_seqs 241 out of 3742
Neff 6.1
Searched_HMMs 39220
Date Mon May 23 14:02:18 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780163.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02639 ClpA ATP-dependent C 100.0 0 0 2162.5 53.7 750 4-755 1-774 (774)
2 CHL00095 clpC Clp protease ATP 100.0 0 0 1872.8 71.6 727 3-760 4-808 (823)
3 PRK11034 clpA ATP-dependent Cl 100.0 0 0 1866.4 72.3 744 3-764 1-744 (758)
4 PRK10865 protein disaggregatio 100.0 0 0 1860.1 71.6 727 1-760 1-853 (857)
5 TIGR03346 chaperone_ClpB ATP-d 100.0 0 0 1859.7 70.7 725 4-761 1-851 (852)
6 COG0542 clpA ATP-binding subun 100.0 0 0 1854.2 69.5 722 3-758 1-777 (786)
7 TIGR03345 VI_ClpV1 type VI sec 100.0 0 0 1848.7 67.6 729 4-756 1-851 (852)
8 KOG1051 consensus 100.0 0 0 1297.7 50.1 721 4-761 12-858 (898)
9 pfam07724 AAA_2 AAA domain (Cd 100.0 0 0 409.4 11.0 162 505-666 1-168 (168)
10 PRK05342 clpX ATP-dependent pr 100.0 7.7E-29 2E-33 226.4 20.2 268 470-758 65-396 (411)
11 TIGR00382 clpX ATP-dependent C 100.0 7.2E-29 1.8E-33 226.6 13.8 278 453-758 87-441 (452)
12 COG1219 ClpX ATP-dependent pro 99.9 2.1E-25 5.5E-30 201.7 17.5 271 470-758 54-385 (408)
13 PRK05201 hslU ATP-dependent pr 99.9 4.1E-24 1.1E-28 192.4 17.5 240 470-733 8-404 (442)
14 KOG0730 consensus 99.9 1.3E-21 3.3E-26 174.5 24.1 401 227-738 220-656 (693)
15 KOG0733 consensus 99.9 1.4E-20 3.7E-25 167.0 25.3 452 202-743 188-742 (802)
16 KOG0745 consensus 99.9 3.2E-22 8.1E-27 178.9 16.7 231 509-758 228-525 (564)
17 PRK10787 DNA-binding ATP-depen 99.9 2.2E-19 5.5E-24 158.5 20.3 293 407-743 258-563 (784)
18 TIGR00763 lon ATP-dependent pr 99.9 1.4E-20 3.6E-25 167.0 13.6 315 386-741 322-667 (941)
19 TIGR01243 CDC48 AAA family ATP 99.8 5.1E-18 1.3E-22 148.6 24.6 388 227-687 242-726 (980)
20 COG0466 Lon ATP-dependent Lon 99.8 1.5E-17 3.8E-22 145.3 19.0 292 407-745 259-567 (782)
21 COG0464 SpoVK ATPases of the A 99.8 2.8E-16 7.2E-21 136.1 21.0 429 217-739 10-467 (494)
22 PRK13342 recombination factor 99.8 2.7E-17 6.9E-22 143.4 15.6 245 195-492 4-261 (417)
23 CHL00195 ycf46 Ycf46; Provisio 99.8 3.4E-16 8.7E-21 135.5 18.9 304 289-688 74-408 (491)
24 KOG0735 consensus 99.7 7.5E-14 1.9E-18 118.7 28.0 427 223-741 429-892 (952)
25 KOG0741 consensus 99.7 4.5E-16 1.1E-20 134.7 14.7 358 216-624 247-648 (744)
26 KOG0736 consensus 99.7 1.5E-14 3.7E-19 123.8 21.1 431 205-735 402-896 (953)
27 KOG2170 consensus 99.7 1.1E-15 2.9E-20 131.7 14.6 222 466-711 71-317 (344)
28 PRK13341 recombination factor 99.7 6.1E-16 1.5E-20 133.7 12.9 179 205-423 35-221 (726)
29 PRK10923 glnG nitrogen regulat 99.7 6.7E-14 1.7E-18 119.0 22.5 351 296-732 3-369 (469)
30 TIGR00390 hslU heat shock prot 99.7 1.9E-15 4.8E-20 130.2 13.3 266 471-757 6-442 (463)
31 PRK11361 acetoacetate metaboli 99.7 3E-13 7.5E-18 114.4 23.8 348 297-732 5-374 (457)
32 COG1220 HslU ATP-dependent pro 99.6 1.6E-14 4.1E-19 123.5 15.7 268 471-757 9-425 (444)
33 KOG2004 consensus 99.6 2.5E-14 6.5E-19 122.1 16.6 297 401-742 342-652 (906)
34 PRK10365 transcriptional regul 99.6 1.4E-12 3.6E-17 109.6 23.0 349 297-732 6-370 (441)
35 pfam10431 ClpB_D2-small C-term 99.6 8.9E-15 2.3E-19 125.4 11.7 85 672-757 1-85 (89)
36 CHL00181 cbbX CbbX; Provisiona 99.6 7.1E-13 1.8E-17 111.7 20.8 186 227-424 61-251 (287)
37 PRK03992 proteasome-activating 99.6 3.7E-13 9.6E-18 113.7 18.5 217 204-452 132-374 (390)
38 CHL00195 ycf46 Ycf46; Provisio 99.6 1.9E-12 4.8E-17 108.6 21.9 210 227-469 261-478 (491)
39 pfam05496 RuvB_N Holliday junc 99.6 1.2E-13 3.2E-18 117.1 14.6 198 476-731 23-226 (234)
40 pfam07728 AAA_5 AAA domain (dy 99.6 5.4E-15 1.4E-19 126.9 7.1 112 510-627 2-124 (139)
41 pfam05496 RuvB_N Holliday junc 99.5 1.9E-13 4.9E-18 115.8 12.8 187 199-430 19-232 (234)
42 COG2256 MGS1 ATPase related to 99.5 1.5E-13 3.9E-18 116.5 12.0 238 194-483 14-264 (436)
43 CHL00176 ftsH cell division pr 99.5 1E-12 2.6E-17 110.5 15.8 223 202-457 175-423 (631)
44 PRK10733 hflB ATP-dependent me 99.5 1.8E-12 4.7E-17 108.7 16.4 226 202-459 150-400 (644)
45 PRK03992 proteasome-activating 99.5 7.3E-13 1.9E-17 111.6 13.8 197 479-734 134-353 (390)
46 PRK13342 recombination factor 99.5 5.8E-13 1.5E-17 112.3 13.2 183 477-729 13-201 (417)
47 PRK11608 pspF phage shock prot 99.5 7.4E-13 1.9E-17 111.6 13.6 226 474-731 3-237 (325)
48 COG2204 AtoC Response regulato 99.5 1.4E-10 3.5E-15 95.2 24.1 347 297-731 5-371 (464)
49 COG0714 MoxR-like ATPases [Gen 99.5 3.1E-13 7.9E-18 114.3 9.4 140 466-625 13-162 (329)
50 PRK05022 anaerobic nitric oxid 99.5 4.5E-12 1.1E-16 105.9 14.8 215 477-732 186-417 (510)
51 TIGR02903 spore_lon_C ATP-depe 99.5 3.9E-12 9.9E-17 106.4 14.0 258 367-711 61-384 (616)
52 PRK11388 DNA-binding transcrip 99.4 6.3E-12 1.6E-16 104.9 14.4 219 478-731 326-551 (639)
53 TIGR03346 chaperone_ClpB ATP-d 99.4 2.4E-09 6E-14 86.4 26.8 65 82-146 1-65 (852)
54 CHL00181 cbbX CbbX; Provisiona 99.4 1.1E-10 2.8E-15 96.0 19.8 224 462-740 8-260 (287)
55 cd00009 AAA The AAA+ (ATPases 99.4 2.3E-12 5.8E-17 108.0 11.1 146 481-670 2-150 (151)
56 TIGR01241 FtsH_fam ATP-depende 99.4 1.4E-12 3.7E-17 109.5 9.6 231 203-467 58-316 (505)
57 PRK13341 recombination factor 99.4 6.2E-12 1.6E-16 104.9 12.4 99 1-104 1-111 (726)
58 PRK12402 replication factor C 99.4 1.3E-11 3.2E-16 102.7 13.2 204 195-422 6-229 (337)
59 COG0464 SpoVK ATPases of the A 99.4 5.6E-11 1.4E-15 98.1 16.2 195 227-450 278-482 (494)
60 PRK10820 DNA-binding transcrip 99.4 3.3E-11 8.4E-16 99.7 14.8 215 476-731 203-427 (513)
61 TIGR03345 VI_ClpV1 type VI sec 99.4 1.1E-09 2.9E-14 88.7 22.1 64 82-145 1-64 (852)
62 pfam00004 AAA ATPase family as 99.3 9.8E-12 2.5E-16 103.5 10.0 118 228-362 1-126 (131)
63 PRK04195 replication factor C 99.3 1.7E-11 4.4E-16 101.7 10.9 180 195-405 5-195 (403)
64 PRK10865 protein disaggregatio 99.3 7.3E-08 1.8E-12 75.7 29.2 66 81-146 5-70 (857)
65 pfam07726 AAA_3 ATPase family 99.3 3.3E-12 8.3E-17 106.9 6.9 108 510-626 2-112 (131)
66 CHL00176 ftsH cell division pr 99.3 5.6E-11 1.4E-15 98.0 12.8 162 476-686 176-361 (631)
67 PRK06647 DNA polymerase III su 99.3 6.2E-11 1.6E-15 97.7 13.0 214 195-448 7-241 (560)
68 PRK00411 cdc6 cell division co 99.3 2E-09 5E-14 86.9 20.6 228 205-452 31-283 (394)
69 PRK10733 hflB ATP-dependent me 99.3 6.1E-11 1.5E-15 97.8 12.7 125 477-626 152-299 (644)
70 COG1222 RPT1 ATP-dependent 26S 99.3 1.3E-10 3.3E-15 95.4 14.3 145 497-688 179-338 (406)
71 PRK00440 rfc replication facto 99.3 6.4E-10 1.6E-14 90.4 17.7 194 195-423 7-206 (318)
72 PRK07270 DNA polymerase III su 99.3 6.7E-11 1.7E-15 97.5 12.3 200 194-425 5-225 (557)
73 PRK06674 DNA polymerase III su 99.3 1.9E-10 4.8E-15 94.3 14.6 213 196-448 8-241 (563)
74 PRK05896 DNA polymerase III su 99.3 7.7E-11 2E-15 97.1 12.4 202 193-426 5-227 (613)
75 COG1221 PspF Transcriptional r 99.3 2.3E-10 5.9E-15 93.6 14.8 224 471-732 72-307 (403)
76 PRK06305 DNA polymerase III su 99.3 9.8E-11 2.5E-15 96.3 12.8 215 194-448 7-243 (462)
77 pfam00004 AAA ATPase family as 99.3 1.2E-11 3E-16 102.9 7.4 115 510-670 1-130 (131)
78 KOG2028 consensus 99.3 1.9E-10 4.8E-15 94.3 13.4 397 184-665 111-541 (554)
79 PRK00080 ruvB Holliday junctio 99.3 8.8E-11 2.2E-15 96.6 11.7 223 202-475 23-272 (328)
80 pfam01078 Mg_chelatase Magnesi 99.3 1.9E-10 4.9E-15 94.2 13.3 178 477-677 3-207 (207)
81 CHL00095 clpC Clp protease ATP 99.3 1.6E-07 4E-12 73.2 28.1 65 81-145 4-68 (823)
82 PRK07940 DNA polymerase III su 99.3 9.3E-11 2.4E-15 96.5 11.5 160 477-681 5-188 (395)
83 PRK00440 rfc replication facto 99.3 6.6E-11 1.7E-15 97.5 10.8 173 477-714 16-193 (318)
84 pfam00158 Sigma54_activat Sigm 99.3 2.9E-11 7.3E-16 100.1 8.4 159 479-668 1-166 (168)
85 TIGR02928 TIGR02928 orc1/cdc6 99.3 2.1E-09 5.3E-14 86.8 17.8 318 205-567 18-377 (383)
86 PRK00080 ruvB Holliday junctio 99.2 1.1E-09 2.7E-14 88.8 16.0 200 470-726 18-226 (328)
87 TIGR02640 gas_vesic_GvpN gas v 99.2 6.2E-11 1.6E-15 97.7 9.3 130 482-626 3-160 (265)
88 PRK09112 DNA polymerase III su 99.2 1.4E-10 3.6E-15 95.2 11.0 164 475-683 21-211 (352)
89 COG1223 Predicted ATPase (AAA+ 99.2 4.9E-10 1.3E-14 91.3 13.7 203 475-743 119-340 (368)
90 COG2256 MGS1 ATPase related to 99.2 1E-10 2.6E-15 96.2 10.1 188 477-729 24-215 (436)
91 PRK08451 DNA polymerase III su 99.2 2.3E-10 5.9E-15 93.6 11.6 215 194-448 4-239 (523)
92 TIGR02902 spore_lonB ATP-depen 99.2 1.7E-10 4.3E-15 94.6 10.8 205 477-728 65-306 (532)
93 PRK05563 DNA polymerase III su 99.2 2.8E-10 7.1E-15 93.0 11.7 199 196-426 8-227 (541)
94 PRK12402 replication factor C 99.2 1.1E-09 2.9E-14 88.7 14.3 189 477-727 15-224 (337)
95 KOG0738 consensus 99.2 3.4E-10 8.5E-15 92.5 11.5 222 199-450 207-468 (491)
96 PRK00411 cdc6 cell division co 99.2 1.6E-09 4.1E-14 87.6 14.9 214 473-726 26-254 (394)
97 PRK07471 DNA polymerase III su 99.2 3.5E-10 8.9E-15 92.3 11.3 161 476-681 16-207 (363)
98 cd00009 AAA The AAA+ (ATPases 99.2 9.2E-11 2.3E-15 96.5 8.2 140 207-361 1-145 (151)
99 PRK07764 DNA polymerase III su 99.2 1.4E-10 3.4E-15 95.3 8.9 200 194-425 5-227 (775)
100 KOG0740 consensus 99.2 3.8E-10 9.6E-15 92.1 11.0 160 227-409 188-358 (428)
101 PRK05564 DNA polymerase III su 99.2 2.2E-10 5.7E-15 93.7 9.8 153 477-683 4-163 (313)
102 PRK04195 replication factor C 99.2 1.1E-09 2.8E-14 88.8 12.7 186 477-729 14-203 (403)
103 PRK13407 bchI magnesium chelat 99.2 2.3E-09 5.8E-14 86.5 14.1 226 477-743 8-291 (334)
104 KOG0730 consensus 99.2 3.9E-09 9.8E-14 84.8 15.2 213 207-451 436-674 (693)
105 TIGR02903 spore_lon_C ATP-depe 99.2 1.7E-09 4.4E-14 87.3 13.1 232 198-463 149-442 (616)
106 PRK08853 DNA polymerase III su 99.1 1.3E-09 3.2E-14 88.3 11.9 198 197-426 9-227 (717)
107 PRK07133 DNA polymerase III su 99.1 2.1E-09 5.4E-14 86.7 12.9 201 194-426 8-226 (718)
108 TIGR00635 ruvB Holliday juncti 99.1 1.5E-09 3.8E-14 87.8 12.1 227 206-493 6-265 (305)
109 PRK06645 DNA polymerase III su 99.1 2.1E-09 5.3E-14 86.8 12.8 215 197-448 14-253 (507)
110 KOG0736 consensus 99.1 1.1E-09 2.8E-14 88.7 10.8 96 508-625 432-541 (953)
111 TIGR02902 spore_lonB ATP-depen 99.1 1.7E-09 4.3E-14 87.4 11.6 226 191-449 52-330 (532)
112 COG5271 MDN1 AAA ATPase contai 99.1 1.7E-09 4.3E-14 87.4 11.3 153 503-686 1542-1704(4600)
113 COG1222 RPT1 ATP-dependent 26S 99.1 7.9E-09 2E-13 82.6 14.3 214 207-452 154-393 (406)
114 PRK11034 clpA ATP-dependent Cl 99.1 2.8E-06 7.1E-11 64.3 29.1 62 82-145 2-63 (758)
115 PRK07399 DNA polymerase III su 99.1 5.1E-09 1.3E-13 83.9 12.7 163 475-683 2-193 (314)
116 PRK09862 putative ATP-dependen 99.1 6.5E-09 1.7E-13 83.2 13.0 225 478-728 192-466 (506)
117 PRK08691 DNA polymerase III su 99.1 3.2E-09 8.1E-14 85.4 11.3 198 196-426 8-227 (704)
118 TIGR02397 dnaX_nterm DNA polym 99.1 3.4E-09 8.7E-14 85.2 11.4 116 478-603 15-143 (363)
119 PRK07994 DNA polymerase III su 99.1 1.1E-09 2.8E-14 88.7 8.6 197 197-425 9-226 (643)
120 PRK07003 DNA polymerase III su 99.0 3.8E-09 9.6E-14 84.9 11.1 197 197-426 9-227 (816)
121 CHL00081 chlI Mg-protoporyphyr 99.0 8.3E-08 2.1E-12 75.3 17.8 227 477-743 12-302 (347)
122 COG3604 FhlA Transcriptional r 99.0 2.4E-08 6.1E-13 79.1 15.0 214 478-733 224-455 (550)
123 PRK05563 DNA polymerase III su 99.0 4.8E-08 1.2E-12 77.0 16.5 36 259-302 118-153 (541)
124 COG0542 clpA ATP-binding subun 99.0 3.4E-06 8.7E-11 63.7 25.9 62 82-145 2-63 (786)
125 KOG0731 consensus 99.0 2.5E-08 6.5E-13 78.9 14.6 158 203-377 310-492 (774)
126 pfam05621 TniB Bacterial TniB 99.0 2E-08 5E-13 79.7 14.0 220 213-446 46-284 (302)
127 TIGR01242 26Sp45 26S proteasom 99.0 2.5E-09 6.3E-14 86.2 9.2 210 208-450 126-362 (364)
128 TIGR03015 pepcterm_ATPase puta 99.0 6.9E-08 1.8E-12 75.8 16.5 223 209-451 27-266 (269)
129 PRK09111 DNA polymerase III su 99.0 1.2E-08 3.1E-13 81.2 12.5 211 197-448 16-253 (600)
130 TIGR01241 FtsH_fam ATP-depende 99.0 3.2E-10 8.2E-15 92.6 4.1 161 477-685 59-243 (505)
131 PRK07270 DNA polymerase III su 99.0 1.5E-07 3.9E-12 73.4 17.2 36 259-302 117-152 (557)
132 COG2255 RuvB Holliday junction 99.0 9.9E-08 2.5E-12 74.7 16.1 175 203-422 25-226 (332)
133 COG0465 HflB ATP-dependent Zn 99.0 2.7E-08 6.8E-13 78.8 13.0 339 202-612 148-513 (596)
134 PRK06305 DNA polymerase III su 99.0 5.8E-07 1.5E-11 69.2 19.7 128 477-625 17-159 (462)
135 KOG0734 consensus 99.0 1.3E-08 3.3E-13 81.1 11.3 153 200-377 300-481 (752)
136 KOG0989 consensus 99.0 4.3E-08 1.1E-12 77.3 13.5 187 194-404 26-221 (346)
137 TIGR03420 DnaA_homol_Hda DnaA 99.0 2.1E-07 5.4E-12 72.3 17.0 161 216-405 29-193 (226)
138 KOG0731 consensus 98.9 1.2E-08 3.1E-13 81.2 10.5 126 476-625 310-458 (774)
139 COG0714 MoxR-like ATPases [Gen 98.9 3.8E-08 9.6E-13 77.7 12.6 151 205-376 25-198 (329)
140 PRK08058 DNA polymerase III su 98.9 5.2E-08 1.3E-12 76.7 13.2 43 478-528 6-49 (329)
141 PRK05342 clpX ATP-dependent pr 98.9 6.4E-08 1.6E-12 76.1 13.2 170 224-405 108-359 (411)
142 PRK12323 DNA polymerase III su 98.9 2.7E-08 7E-13 78.7 11.3 197 197-426 9-232 (721)
143 PRK08451 DNA polymerase III su 98.9 5.2E-07 1.3E-11 69.5 17.6 123 477-626 14-156 (523)
144 PRK08853 DNA polymerase III su 98.9 5.7E-07 1.5E-11 69.2 17.8 19 314-332 210-228 (717)
145 COG0606 Predicted ATPase with 98.9 3.7E-08 9.5E-13 77.8 11.4 225 477-730 179-447 (490)
146 pfam01637 Arch_ATPase Archaeal 98.9 4.9E-07 1.3E-11 69.7 17.1 189 206-404 1-214 (223)
147 COG2255 RuvB Holliday junction 98.9 5.7E-08 1.5E-12 76.4 12.0 200 470-726 19-227 (332)
148 PRK07003 DNA polymerase III su 98.9 1.5E-06 3.7E-11 66.3 19.2 27 676-702 686-712 (816)
149 TIGR01817 nifA Nif-specific re 98.9 9.3E-08 2.4E-12 74.9 12.9 233 473-758 208-458 (574)
150 PRK06674 DNA polymerase III su 98.9 1.6E-06 4.1E-11 66.0 19.1 37 258-302 117-153 (563)
151 PRK06645 DNA polymerase III su 98.9 7.1E-07 1.8E-11 68.6 17.3 128 477-625 21-166 (507)
152 PRK06647 DNA polymerase III su 98.8 9.5E-07 2.4E-11 67.6 17.2 129 477-626 16-158 (560)
153 TIGR00635 ruvB Holliday juncti 98.8 2.9E-08 7.4E-13 78.5 9.4 192 477-725 4-204 (305)
154 KOG0727 consensus 98.8 2E-08 5.1E-13 79.7 8.4 135 498-680 184-333 (408)
155 COG3829 RocR Transcriptional r 98.8 5.8E-07 1.5E-11 69.2 15.8 214 477-731 245-476 (560)
156 COG1474 CDC6 Cdc6-related prot 98.8 3.2E-06 8.1E-11 63.9 19.4 229 206-450 19-264 (366)
157 PRK08691 DNA polymerase III su 98.8 4.2E-06 1.1E-10 63.0 19.7 40 255-302 114-153 (704)
158 PRK00149 dnaA chromosomal repl 98.8 2.9E-07 7.3E-12 71.4 13.5 155 226-402 145-308 (447)
159 COG1223 Predicted ATPase (AAA+ 98.8 2.5E-07 6.4E-12 71.8 13.1 221 194-450 111-354 (368)
160 PRK05896 DNA polymerase III su 98.8 1.6E-06 4.2E-11 65.9 17.2 127 477-625 16-157 (613)
161 PRK07133 DNA polymerase III su 98.8 1.6E-06 4E-11 66.1 17.0 38 257-302 115-152 (718)
162 COG1474 CDC6 Cdc6-related prot 98.8 1.9E-07 4.8E-12 72.7 12.2 209 472-722 12-233 (366)
163 TIGR02928 TIGR02928 orc1/cdc6 98.8 3.8E-08 9.6E-13 77.7 8.7 220 473-731 11-265 (383)
164 KOG0739 consensus 98.8 7.8E-08 2E-12 75.5 10.1 133 225-376 166-308 (439)
165 pfam06068 TIP49 TIP49 C-termin 98.8 6.2E-07 1.6E-11 69.0 14.7 104 578-716 277-380 (395)
166 TIGR03420 DnaA_homol_Hda DnaA 98.8 5.8E-07 1.5E-11 69.2 14.4 157 510-729 41-204 (226)
167 pfam00493 MCM MCM2/3/5 family. 98.8 7E-07 1.8E-11 68.6 14.6 221 466-711 13-268 (327)
168 KOG0737 consensus 98.8 7.7E-07 2E-11 68.3 14.5 137 226-381 128-275 (386)
169 KOG0733 consensus 98.8 7.5E-08 1.9E-12 75.6 9.4 137 225-379 545-691 (802)
170 TIGR01242 26Sp45 26S proteasom 98.8 5.3E-08 1.3E-12 76.7 8.3 124 477-625 122-269 (364)
171 COG5271 MDN1 AAA ATPase contai 98.8 5.4E-07 1.4E-11 69.4 13.4 148 504-682 888-1044(4600)
172 PRK12422 chromosomal replicati 98.7 3.9E-07 9.9E-12 70.4 12.6 171 206-402 114-302 (455)
173 PRK10787 DNA-binding ATP-depen 98.7 1.2E-06 3.1E-11 66.8 15.1 178 206-405 324-537 (784)
174 PRK13407 bchI magnesium chelat 98.7 1.3E-06 3.3E-11 66.7 14.8 232 206-461 10-320 (334)
175 smart00382 AAA ATPases associa 98.7 2.5E-08 6.3E-13 79.0 6.0 116 508-626 3-125 (148)
176 pfam00308 Bac_DnaA Bacterial d 98.7 3.6E-07 9.1E-12 70.7 11.8 159 505-714 32-199 (219)
177 pfam06309 Torsin Torsin. This 98.7 4.1E-08 1E-12 77.5 6.8 106 466-582 14-127 (127)
178 PRK05648 DNA polymerase III su 98.7 2.4E-08 6.1E-13 79.1 5.4 197 197-426 9-227 (705)
179 TIGR00763 lon ATP-dependent pr 98.7 1.7E-07 4.4E-12 73.0 9.6 152 229-405 454-643 (941)
180 KOG0735 consensus 98.7 3.2E-07 8.2E-12 71.0 10.8 98 508-625 432-549 (952)
181 PRK08770 DNA polymerase III su 98.7 7.2E-08 1.8E-12 75.7 7.2 258 197-495 9-291 (663)
182 COG0593 DnaA ATPase involved i 98.7 3.4E-06 8.7E-11 63.6 15.1 209 226-465 113-345 (408)
183 PRK05648 DNA polymerase III su 98.7 2.5E-05 6.4E-10 57.4 19.5 39 256-302 115-153 (705)
184 KOG2028 consensus 98.6 8.2E-08 2.1E-12 75.3 6.5 213 435-714 110-327 (554)
185 PRK08084 DNA replication initi 98.6 3.7E-06 9.5E-11 63.4 15.0 187 206-423 25-216 (235)
186 CHL00081 chlI Mg-protoporyphyr 98.6 2.2E-06 5.5E-11 65.1 13.8 238 206-463 14-333 (347)
187 pfam07728 AAA_5 AAA domain (dy 98.6 2.7E-08 7E-13 78.7 4.0 116 227-359 1-139 (139)
188 PRK12377 putative replication 98.6 6.2E-07 1.6E-11 69.0 10.9 122 481-631 82-210 (248)
189 COG2812 DnaX DNA polymerase II 98.6 2.8E-07 7.1E-12 71.5 9.1 212 196-448 8-241 (515)
190 PRK07764 DNA polymerase III su 98.6 9.5E-06 2.4E-10 60.5 16.7 118 476-603 14-147 (775)
191 KOG0737 consensus 98.6 2.1E-07 5.4E-12 72.4 8.2 200 374-622 18-235 (386)
192 pfam00308 Bac_DnaA Bacterial d 98.6 3E-06 7.5E-11 64.1 14.0 191 213-428 19-217 (219)
193 PRK06872 DNA polymerase III su 98.6 1.5E-07 3.8E-12 73.4 7.3 196 198-426 10-227 (696)
194 PRK08770 DNA polymerase III su 98.6 4.4E-05 1.1E-09 55.7 19.6 40 255-302 114-153 (663)
195 KOG0732 consensus 98.6 6E-07 1.5E-11 69.1 10.0 140 227-378 301-449 (1080)
196 PRK13765 ATP-dependent proteas 98.6 1.7E-05 4.3E-10 58.6 17.0 141 299-449 229-398 (637)
197 KOG0729 consensus 98.6 8.4E-07 2.1E-11 68.0 10.3 133 227-376 213-357 (435)
198 KOG0738 consensus 98.6 6.2E-07 1.6E-11 69.0 9.6 108 479-601 214-341 (491)
199 PRK07994 DNA polymerase III su 98.6 6.8E-05 1.7E-09 54.3 20.0 40 255-302 114-153 (643)
200 pfam05673 DUF815 Protein of un 98.6 1.7E-05 4.3E-10 58.7 16.7 159 205-393 29-215 (248)
201 PRK08903 hypothetical protein; 98.6 5.3E-06 1.4E-10 62.3 14.0 45 355-403 142-189 (227)
202 PRK08116 hypothetical protein; 98.6 1.5E-06 3.8E-11 66.3 11.1 165 481-692 86-261 (262)
203 PRK12323 DNA polymerase III su 98.6 6.2E-05 1.6E-09 54.6 19.4 36 259-302 123-158 (721)
204 PRK05642 DNA replication initi 98.5 1.3E-05 3.3E-10 59.5 15.7 151 226-405 45-200 (234)
205 PRK13765 ATP-dependent proteas 98.5 2.7E-06 7E-11 64.3 12.2 49 200-250 27-75 (637)
206 PRK05564 DNA polymerase III su 98.5 1.3E-05 3.3E-10 59.5 15.7 184 203-422 3-193 (313)
207 COG1241 MCM2 Predicted ATPase 98.5 1E-05 2.7E-10 60.2 14.9 255 468-748 277-584 (682)
208 TIGR02397 dnaX_nterm DNA polym 98.5 1.3E-05 3.4E-10 59.4 15.5 207 202-448 12-241 (363)
209 PRK09111 DNA polymerase III su 98.5 2.4E-05 6.1E-10 57.6 16.7 43 256-306 127-172 (600)
210 PRK06872 DNA polymerase III su 98.5 9.4E-05 2.4E-09 53.3 19.6 36 259-302 118-153 (696)
211 TIGR02974 phageshock_pspF psp 98.5 2.1E-06 5.3E-11 65.2 11.0 219 479-733 1-232 (349)
212 KOG0728 consensus 98.5 8.3E-06 2.1E-10 60.9 14.1 141 505-689 180-335 (404)
213 PRK05642 DNA replication initi 98.5 7.3E-06 1.9E-10 61.3 13.8 185 474-730 17-212 (234)
214 TIGR01243 CDC48 AAA family ATP 98.5 1.1E-05 2.9E-10 59.9 14.7 304 11-377 401-721 (980)
215 PRK13531 regulatory ATPase Rav 98.5 1.7E-07 4.5E-12 72.9 5.2 257 186-490 6-317 (498)
216 PRK08181 transposase; Validate 98.5 1.1E-06 2.8E-11 67.1 9.2 70 223-305 104-176 (269)
217 PRK04132 replication factor C 98.5 1.1E-07 2.9E-12 74.3 4.1 55 196-250 17-71 (863)
218 COG1224 TIP49 DNA helicase TIP 98.5 2.2E-05 5.5E-10 57.9 15.3 115 578-733 293-407 (450)
219 PRK08769 DNA polymerase III su 98.5 3.6E-06 9.2E-11 63.5 11.1 180 213-424 13-213 (319)
220 TIGR00368 TIGR00368 Mg chelata 98.5 7.4E-08 1.9E-12 75.6 2.3 224 478-727 195-478 (505)
221 KOG0728 consensus 98.5 2E-06 5.2E-11 65.3 9.5 196 224-451 180-388 (404)
222 COG0466 Lon ATP-dependent Lon 98.4 1E-05 2.6E-10 60.2 13.0 177 207-405 326-539 (782)
223 COG3284 AcoR Transcriptional a 98.4 7.4E-06 1.9E-10 61.2 12.2 215 480-730 316-536 (606)
224 PRK13531 regulatory ATPase Rav 98.4 2.7E-05 6.9E-10 57.2 14.8 142 465-626 8-156 (498)
225 PRK08727 hypothetical protein; 98.4 2.8E-05 7.2E-10 57.1 14.7 141 510-714 44-195 (233)
226 PRK09183 transposase/IS protei 98.4 1.2E-06 3E-11 67.0 7.6 99 509-630 103-208 (258)
227 COG1484 DnaC DNA replication p 98.4 2.9E-06 7.3E-11 64.2 9.5 121 508-653 106-232 (254)
228 PRK06526 transposase; Provisio 98.4 1.2E-06 3.1E-11 66.9 7.5 69 224-305 97-168 (254)
229 PRK08727 hypothetical protein; 98.4 7E-05 1.8E-09 54.2 16.5 204 207-450 23-230 (233)
230 PRK05201 hslU ATP-dependent pr 98.4 7.3E-06 1.9E-10 61.3 11.4 55 224-289 49-104 (442)
231 PRK07952 DNA replication prote 98.4 1.8E-06 4.6E-11 65.7 8.2 124 481-633 77-208 (242)
232 KOG0651 consensus 98.4 1.9E-06 4.9E-11 65.4 8.4 157 203-376 131-312 (388)
233 COG0465 HflB ATP-dependent Zn 98.4 1.8E-05 4.5E-10 58.5 13.2 97 475-587 148-253 (596)
234 PRK07132 DNA polymerase III su 98.4 8.2E-06 2.1E-10 60.9 11.4 66 298-377 94-161 (303)
235 pfam07726 AAA_3 ATPase family 98.4 3.3E-07 8.5E-12 70.9 4.1 107 227-360 1-130 (131)
236 TIGR00382 clpX ATP-dependent C 98.4 6.5E-07 1.7E-11 68.8 5.5 74 224-308 151-229 (452)
237 COG0470 HolB ATPase involved i 98.4 1.7E-06 4.4E-11 65.8 7.6 169 206-408 3-194 (325)
238 smart00382 AAA ATPases associa 98.4 3.6E-06 9.3E-11 63.5 9.1 126 225-361 2-140 (148)
239 PRK11331 5-methylcytosine-spec 98.4 2.4E-06 6.2E-11 64.7 7.9 213 504-739 193-441 (459)
240 COG3283 TyrR Transcriptional r 98.4 6.1E-05 1.5E-09 54.7 15.0 217 477-731 204-429 (511)
241 pfam08298 AAA_PrkA PrkA AAA do 98.4 1.6E-05 4E-10 58.9 12.0 109 578-711 235-344 (358)
242 KOG0734 consensus 98.3 9.8E-07 2.5E-11 67.6 5.8 95 477-587 304-407 (752)
243 COG1219 ClpX ATP-dependent pro 98.3 1.7E-05 4.3E-10 58.6 11.8 167 224-403 96-346 (408)
244 pfam01695 IstB IstB-like ATP b 98.3 3.3E-06 8.4E-11 63.8 8.1 101 509-632 49-155 (178)
245 KOG0744 consensus 98.3 1.2E-05 3.1E-10 59.7 10.9 139 500-690 173-345 (423)
246 KOG2004 consensus 98.3 2.3E-05 5.9E-10 57.7 12.3 180 206-403 413-625 (906)
247 PRK06893 DNA replication initi 98.3 7.6E-05 1.9E-09 54.0 14.7 39 361-403 155-193 (229)
248 smart00350 MCM minichromosome 98.3 7.3E-05 1.9E-09 54.1 14.6 223 468-711 194-448 (509)
249 KOG0989 consensus 98.3 2.9E-05 7.5E-10 56.9 12.5 172 477-713 36-220 (346)
250 TIGR02915 PEP_resp_reg putativ 98.3 7.8E-05 2E-09 53.9 14.7 247 441-731 106-372 (451)
251 PRK00149 dnaA chromosomal repl 98.3 4.7E-05 1.2E-09 55.5 13.5 207 473-741 116-344 (447)
252 PRK08084 DNA replication initi 98.3 0.00014 3.4E-09 52.2 15.6 184 473-730 19-213 (235)
253 PRK08903 hypothetical protein; 98.3 4.3E-05 1.1E-09 55.8 13.0 161 510-741 45-224 (227)
254 PRK06893 DNA replication initi 98.3 1.1E-05 2.8E-10 60.0 9.9 159 509-729 41-206 (229)
255 pfam02861 Clp_N Clp amino term 98.3 1.6E-06 4.2E-11 66.0 5.6 50 15-64 1-52 (53)
256 PRK10923 glnG nitrogen regulat 98.3 3.8E-06 9.7E-11 63.3 7.3 151 202-373 136-315 (469)
257 pfam03215 Rad17 Rad17 cell cyc 98.3 0.00017 4.3E-09 51.5 15.5 138 185-333 8-160 (490)
258 PRK09112 DNA polymerase III su 98.2 0.00011 2.7E-09 52.9 14.4 197 204-425 23-247 (352)
259 KOG0726 consensus 98.2 3.4E-06 8.7E-11 63.7 6.6 132 227-376 221-365 (440)
260 TIGR02880 cbbX_cfxQ CbbX prote 98.2 0.0001 2.7E-09 53.0 14.0 215 473-739 18-258 (284)
261 COG1224 TIP49 DNA helicase TIP 98.2 7.7E-05 2E-09 53.9 13.2 44 227-271 67-111 (450)
262 PRK11608 pspF phage shock prot 98.2 2.2E-05 5.6E-10 57.8 10.3 145 201-373 3-183 (325)
263 PRK06835 DNA replication prote 98.2 2.6E-05 6.5E-10 57.4 10.6 129 481-633 160-295 (330)
264 PRK07399 DNA polymerase III su 98.2 0.00018 4.6E-09 51.3 14.8 193 202-421 2-223 (314)
265 pfam01078 Mg_chelatase Magnesi 98.2 1.2E-05 2.9E-10 59.9 8.4 144 206-370 5-205 (207)
266 PRK11331 5-methylcytosine-spec 98.2 1.4E-05 3.6E-10 59.2 8.7 147 213-366 184-357 (459)
267 PRK08769 DNA polymerase III su 98.2 0.00039 9.9E-09 48.9 16.0 120 482-626 9-152 (319)
268 PRK07471 DNA polymerase III su 98.2 0.00051 1.3E-08 48.0 16.5 191 205-423 18-241 (363)
269 KOG0732 consensus 98.2 7.5E-06 1.9E-10 61.2 7.0 82 511-601 303-399 (1080)
270 COG3854 SpoIIIAA ncharacterize 98.2 2.2E-05 5.6E-10 57.8 9.4 113 213-340 125-250 (308)
271 PRK12422 chromosomal replicati 98.2 0.00021 5.4E-09 50.8 14.4 205 472-730 107-317 (455)
272 PRK09087 hypothetical protein; 98.2 0.00012 3.1E-09 52.5 13.1 171 503-741 40-220 (226)
273 COG0470 HolB ATPase involved i 98.1 8E-05 2E-09 53.8 12.0 118 478-625 2-147 (325)
274 pfam00493 MCM MCM2/3/5 family. 98.1 0.00026 6.7E-09 50.1 14.6 175 223-421 55-267 (327)
275 KOG1969 consensus 98.1 6.3E-05 1.6E-09 54.6 11.2 170 208-404 308-501 (877)
276 PRK11361 acetoacetate metaboli 98.1 2.4E-05 6.2E-10 57.5 8.8 145 202-374 141-321 (457)
277 KOG0740 consensus 98.1 0.00011 2.9E-09 52.7 12.2 128 479-626 155-299 (428)
278 KOG0726 consensus 98.1 1.2E-05 3.1E-10 59.7 6.9 158 481-685 189-369 (440)
279 TIGR03015 pepcterm_ATPase puta 98.1 0.00049 1.2E-08 48.2 15.0 207 481-740 27-248 (269)
280 PRK11388 DNA-binding transcrip 98.1 7.5E-05 1.9E-09 54.0 10.9 176 202-398 323-530 (639)
281 KOG0729 consensus 98.1 6.1E-06 1.5E-10 61.9 5.2 123 480-626 180-325 (435)
282 pfam07724 AAA_2 AAA domain (Cd 98.1 9.1E-06 2.3E-10 60.6 6.0 94 224-335 2-105 (168)
283 PRK09183 transposase/IS protei 98.1 2.9E-05 7.3E-10 57.0 8.6 112 223-353 99-217 (258)
284 PRK08939 primosomal protein Dn 98.1 6.2E-05 1.6E-09 54.6 10.2 126 483-633 138-268 (306)
285 KOG0743 consensus 98.1 7.3E-05 1.9E-09 54.1 10.5 219 451-730 188-434 (457)
286 COG2607 Predicted ATPase (AAA+ 98.1 0.001 2.6E-08 45.8 16.2 159 209-397 69-252 (287)
287 TIGR02881 spore_V_K stage V sp 98.0 0.00035 9E-09 49.2 13.6 207 479-739 8-243 (261)
288 KOG0652 consensus 98.0 8.8E-05 2.2E-09 53.5 10.0 156 206-379 173-354 (424)
289 smart00763 AAA_PrkA PrkA AAA d 98.0 0.00014 3.7E-09 52.0 11.0 107 578-710 238-346 (361)
290 PRK05917 DNA polymerase III su 98.0 3.7E-05 9.5E-10 56.2 7.9 124 482-627 2-135 (290)
291 PHA02244 ATPase-like protein 98.0 2.7E-05 7E-10 57.1 7.2 189 500-723 115-315 (383)
292 PRK10820 DNA-binding transcrip 98.0 0.00011 2.7E-09 53.0 10.2 171 200-398 200-406 (513)
293 pfam05673 DUF815 Protein of un 98.0 0.0011 2.7E-08 45.7 15.2 190 477-713 28-230 (248)
294 TIGR02881 spore_V_K stage V sp 98.0 0.00029 7.3E-09 49.8 12.3 171 211-398 19-205 (261)
295 COG1484 DnaC DNA replication p 98.0 0.00014 3.6E-09 52.1 10.3 113 224-351 104-219 (254)
296 PRK12377 putative replication 98.0 7.9E-05 2E-09 53.8 9.0 114 224-357 100-221 (248)
297 PRK06526 transposase; Provisio 97.9 6.4E-05 1.6E-09 54.5 8.2 101 509-632 100-206 (254)
298 KOG0478 consensus 97.9 0.0011 2.7E-08 45.8 14.4 264 463-746 415-714 (804)
299 PRK06964 DNA polymerase III su 97.9 0.00019 4.9E-09 51.1 10.6 140 225-378 21-202 (342)
300 pfam06068 TIP49 TIP49 C-termin 97.9 0.00014 3.5E-09 52.1 9.9 44 227-271 52-96 (395)
301 pfam00158 Sigma54_activat Sigm 97.9 1.4E-05 3.5E-10 59.3 4.6 127 206-353 1-153 (168)
302 COG1221 PspF Transcriptional r 97.9 0.00029 7.4E-09 49.8 11.3 176 203-394 77-278 (403)
303 TIGR01818 ntrC nitrogen regula 97.9 0.00066 1.7E-08 47.2 13.1 233 473-760 131-382 (471)
304 PRK00131 aroK shikimate kinase 97.9 0.00075 1.9E-08 46.8 13.3 158 223-406 2-172 (175)
305 PRK05707 DNA polymerase III su 97.9 3.8E-05 9.7E-10 56.1 6.6 159 228-422 25-206 (328)
306 KOG0745 consensus 97.9 2.8E-05 7.1E-10 57.1 5.8 76 223-309 224-304 (564)
307 PRK09862 putative ATP-dependen 97.9 0.00025 6.3E-09 50.3 10.4 145 203-368 190-389 (506)
308 PRK08181 transposase; Validate 97.9 0.00011 2.8E-09 52.9 8.6 100 509-631 108-213 (269)
309 KOG0739 consensus 97.9 0.00012 3.1E-09 52.5 8.9 184 478-715 134-335 (439)
310 COG1239 ChlI Mg-chelatase subu 97.9 0.00049 1.3E-08 48.1 11.9 217 473-726 13-294 (423)
311 smart00350 MCM minichromosome 97.9 0.0013 3.3E-08 45.1 13.8 180 223-423 234-449 (509)
312 KOG0742 consensus 97.9 0.00022 5.5E-09 50.7 9.8 157 484-690 361-533 (630)
313 KOG0991 consensus 97.9 0.00048 1.2E-08 48.2 11.6 180 194-405 17-206 (333)
314 PRK08699 DNA polymerase III su 97.9 0.0005 1.3E-08 48.1 11.5 22 229-250 25-46 (325)
315 pfam01695 IstB IstB-like ATP b 97.8 0.00014 3.5E-09 52.1 8.6 108 223-350 45-159 (178)
316 PRK12724 flagellar biosynthesi 97.8 9.3E-05 2.4E-09 53.3 7.6 87 506-594 222-317 (432)
317 KOG0652 consensus 97.8 0.00036 9.2E-09 49.1 10.4 156 481-688 175-358 (424)
318 PRK05057 aroK shikimate kinase 97.8 0.00074 1.9E-08 46.9 11.7 152 223-401 2-163 (172)
319 KOG0727 consensus 97.8 0.00037 9.5E-09 49.0 9.9 190 227-450 191-395 (408)
320 COG0593 DnaA ATPase involved i 97.8 0.00096 2.5E-08 46.1 11.8 211 474-748 85-318 (408)
321 TIGR02639 ClpA ATP-dependent C 97.7 0.00013 3.4E-09 52.2 7.1 175 479-713 210-409 (774)
322 KOG1808 consensus 97.7 3.2E-05 8.1E-10 56.7 3.9 88 512-601 720-818 (1856)
323 KOG0651 consensus 97.7 0.00048 1.2E-08 48.2 9.6 124 479-627 134-281 (388)
324 PRK06620 hypothetical protein; 97.7 0.0026 6.6E-08 43.0 13.2 132 509-714 46-180 (214)
325 PRK07276 DNA polymerase III su 97.7 0.00039 9.9E-09 48.9 8.9 118 481-626 6-143 (290)
326 PRK06871 DNA polymerase III su 97.7 0.00033 8.5E-09 49.4 8.5 160 227-422 25-205 (324)
327 KOG3595 consensus 97.7 0.0025 6.5E-08 43.0 13.0 165 504-688 462-649 (1395)
328 COG3899 Predicted ATPase [Gene 97.7 6.1E-05 1.6E-09 54.7 4.7 48 205-252 1-51 (849)
329 PTZ00111 DNA replication licen 97.7 0.0017 4.3E-08 44.3 11.9 186 466-671 440-643 (916)
330 PRK13946 shikimate kinase; Pro 97.7 0.0069 1.8E-07 39.9 14.9 139 218-388 13-164 (195)
331 KOG0742 consensus 97.6 0.0013 3.2E-08 45.2 11.0 161 198-378 347-526 (630)
332 PRK06921 hypothetical protein; 97.6 0.00026 6.6E-09 50.2 7.4 21 508-528 117-137 (265)
333 COG2204 AtoC Response regulato 97.6 0.00048 1.2E-08 48.2 8.7 148 203-371 140-316 (464)
334 pfam05729 NACHT NACHT domain. 97.6 0.0079 2E-07 39.5 14.8 140 228-376 3-158 (165)
335 pfam02861 Clp_N Clp amino term 97.6 0.00016 4.2E-09 51.6 6.0 50 93-142 1-50 (53)
336 KOG1051 consensus 97.6 0.0011 2.8E-08 45.7 10.2 66 2-67 88-155 (898)
337 PRK10365 transcriptional regul 97.6 0.00021 5.4E-09 50.8 6.5 176 205-398 140-348 (441)
338 PRK08116 hypothetical protein; 97.6 0.0023 5.9E-08 43.3 11.8 128 227-371 110-247 (262)
339 TIGR00678 holB DNA polymerase 97.6 0.00021 5.3E-09 50.9 6.4 143 504-684 11-192 (216)
340 KOG1970 consensus 97.6 0.0029 7.3E-08 42.6 12.2 122 211-344 92-238 (634)
341 TIGR03499 FlhF flagellar biosy 97.6 0.00019 4.7E-09 51.2 6.0 74 508-583 195-279 (282)
342 PRK06871 DNA polymerase III su 97.6 0.0092 2.4E-07 39.0 14.5 109 504-626 20-145 (324)
343 PRK12727 flagellar biosynthesi 97.6 5.6E-05 1.4E-09 54.9 3.0 109 506-626 347-467 (557)
344 PRK05022 anaerobic nitric oxid 97.6 0.00032 8.2E-09 49.5 6.8 151 205-373 187-363 (510)
345 COG2812 DnaX DNA polymerase II 97.5 0.01 2.6E-07 38.7 14.3 42 479-528 18-59 (515)
346 pfam00910 RNA_helicase RNA hel 97.5 7E-05 1.8E-09 54.2 3.2 95 511-626 2-105 (105)
347 pfam00437 GSPII_E Type II/IV s 97.5 0.00016 4E-09 51.7 5.0 91 508-605 140-235 (283)
348 PRK08058 DNA polymerase III su 97.5 0.005 1.3E-07 40.9 12.6 180 204-421 5-206 (329)
349 pfam03266 DUF265 Protein of un 97.5 0.0007 1.8E-08 47.1 8.2 133 227-371 1-162 (168)
350 PRK05703 flhF flagellar biosyn 97.5 0.00023 5.8E-09 50.6 5.7 89 503-593 206-305 (412)
351 pfam01637 Arch_ATPase Archaeal 97.5 0.0085 2.2E-07 39.3 13.7 170 480-688 2-197 (223)
352 PRK13406 bchD magnesium chelat 97.5 0.0015 3.8E-08 44.7 9.4 196 227-448 27-247 (584)
353 KOG0744 consensus 97.5 0.0023 5.9E-08 43.3 10.3 155 220-381 164-341 (423)
354 PRK06995 flhF flagellar biosyn 97.5 0.0003 7.6E-09 49.7 5.8 83 508-592 177-270 (404)
355 PRK07993 DNA polymerase III su 97.5 0.00043 1.1E-08 48.6 6.5 181 184-422 4-207 (334)
356 PRK12723 flagellar biosynthesi 97.4 0.0005 1.3E-08 48.1 6.4 119 502-632 170-303 (388)
357 KOG1514 consensus 97.4 0.014 3.7E-07 37.6 17.9 189 505-732 419-626 (767)
358 TIGR02442 Cob-chelat-sub cobal 97.4 0.015 3.9E-07 37.4 14.6 205 224-448 24-306 (688)
359 COG1239 ChlI Mg-chelatase subu 97.4 0.0051 1.3E-07 40.9 11.1 200 227-454 40-306 (423)
360 pfam00448 SRP54 SRP54-type pro 97.4 0.00024 6.2E-09 50.4 4.2 112 509-631 3-130 (196)
361 cd01131 PilT Pilus retraction 97.4 0.0007 1.8E-08 47.0 6.5 93 508-605 2-101 (198)
362 PRK03731 aroL shikimate kinase 97.3 0.0059 1.5E-07 40.4 10.8 146 225-393 2-153 (172)
363 KOG0743 consensus 97.3 0.0068 1.7E-07 40.0 11.0 128 223-376 233-378 (457)
364 PTZ00112 origin recognition co 97.3 0.0016 4.1E-08 44.4 7.7 336 205-578 268-643 (650)
365 cd03115 SRP The signal recogni 97.3 0.00054 1.4E-08 47.8 5.2 31 509-539 2-37 (173)
366 PRK06731 flhF flagellar biosyn 97.3 0.0015 3.9E-08 44.6 7.5 106 483-590 51-168 (270)
367 TIGR02880 cbbX_cfxQ CbbX prote 97.3 0.009 2.3E-07 39.1 11.4 178 186-377 16-205 (284)
368 TIGR02915 PEP_resp_reg putativ 97.3 0.0013 3.3E-08 45.1 7.1 142 203-368 141-314 (451)
369 COG3829 RocR Transcriptional r 97.2 0.0013 3.4E-08 45.0 6.9 175 202-420 243-456 (560)
370 COG4650 RtcR Sigma54-dependent 97.2 0.0072 1.8E-07 39.8 10.5 212 474-718 181-406 (531)
371 COG0606 Predicted ATPase with 97.2 0.0028 7.1E-08 42.7 8.4 134 205-369 180-337 (490)
372 PRK07132 DNA polymerase III su 97.2 0.0045 1.1E-07 41.3 9.4 122 482-625 3-130 (303)
373 PRK06090 DNA polymerase III su 97.2 0.0016 4E-08 44.5 7.0 183 184-422 5-204 (319)
374 pfam03969 AFG1_ATPase AFG1-lik 97.2 0.0031 7.9E-08 42.4 8.4 96 227-338 63-162 (361)
375 PRK06921 hypothetical protein; 97.2 0.0056 1.4E-07 40.6 9.6 70 224-305 115-185 (265)
376 PRK07940 DNA polymerase III su 97.2 0.026 6.6E-07 35.8 17.2 153 203-377 4-189 (395)
377 PRK09087 hypothetical protein; 97.2 0.021 5.4E-07 36.4 12.4 188 212-451 31-222 (226)
378 TIGR02858 spore_III_AA stage I 97.1 0.0064 1.6E-07 40.1 9.2 106 226-344 124-245 (282)
379 cd01129 PulE-GspE PulE/GspE Th 97.1 0.0017 4.3E-08 44.3 6.2 95 504-604 77-175 (264)
380 pfam00931 NB-ARC NB-ARC domain 97.1 0.01 2.6E-07 38.7 10.2 149 209-378 1-167 (285)
381 PRK13947 shikimate kinase; Pro 97.0 0.023 5.8E-07 36.2 11.5 137 226-387 2-144 (171)
382 PRK13695 putative NTPase; Prov 97.0 0.0046 1.2E-07 41.2 7.9 139 227-380 5-171 (174)
383 PRK06090 DNA polymerase III su 97.0 0.035 8.9E-07 34.8 12.6 113 504-631 22-152 (319)
384 KOG0741 consensus 97.0 0.0013 3.4E-08 45.0 5.2 19 511-529 260-278 (744)
385 pfam07693 KAP_NTPase KAP famil 97.0 0.036 9.2E-07 34.7 14.5 124 578-729 162-293 (301)
386 PRK11160 cysteine/glutathione 97.0 0.0027 6.9E-08 42.8 6.6 32 508-539 368-401 (575)
387 TIGR02640 gas_vesic_GvpN gas v 97.0 0.0019 4.8E-08 44.0 5.7 152 227-404 23-213 (265)
388 PRK13900 type IV secretion sys 97.0 0.0017 4.3E-08 44.3 5.5 89 509-603 162-259 (332)
389 PRK05707 DNA polymerase III su 97.0 0.032 8.3E-07 35.1 12.0 111 504-628 19-147 (328)
390 PRK11664 ATP-dependent RNA hel 97.0 0.015 3.8E-07 37.5 10.2 34 205-243 5-38 (812)
391 PRK04132 replication factor C 97.0 0.0053 1.4E-07 40.7 7.7 37 583-631 652-689 (863)
392 KOG1969 consensus 97.0 0.022 5.7E-07 36.2 10.9 172 496-713 314-500 (877)
393 TIGR01842 type_I_sec_PrtD type 96.9 0.0008 2E-08 46.6 3.4 37 508-544 356-395 (556)
394 PRK06835 DNA replication prote 96.9 0.019 4.8E-07 36.8 10.4 133 216-368 175-318 (330)
395 COG1419 FlhF Flagellar GTP-bin 96.9 0.0012 3.1E-08 45.4 4.3 82 505-594 201-299 (407)
396 cd01130 VirB11-like_ATPase Typ 96.9 0.0017 4.5E-08 44.2 5.1 91 508-603 26-124 (186)
397 PRK07993 DNA polymerase III su 96.9 0.042 1.1E-06 34.3 14.7 112 505-630 22-151 (334)
398 KOG2227 consensus 96.9 0.007 1.8E-07 39.9 8.1 196 204-421 150-373 (529)
399 KOG0055 consensus 96.9 0.0098 2.5E-07 38.8 8.8 90 509-600 1018-1173(1228)
400 PRK13406 bchD magnesium chelat 96.9 0.025 6.4E-07 35.8 10.8 11 392-402 239-249 (584)
401 KOG3347 consensus 96.9 0.03 7.5E-07 35.4 11.2 121 509-658 9-143 (176)
402 cd03238 ABC_UvrA The excision 96.9 0.0025 6.5E-08 43.0 5.6 20 509-528 23-42 (176)
403 cd00464 SK Shikimate kinase (S 96.9 0.029 7.4E-07 35.4 11.0 140 227-392 1-146 (154)
404 COG1643 HrpA HrpA-like helicas 96.9 0.0062 1.6E-07 40.2 7.5 138 205-356 50-221 (845)
405 PTZ00112 origin recognition co 96.9 0.0068 1.7E-07 39.9 7.7 215 473-732 263-494 (650)
406 PRK13948 shikimate kinase; Pro 96.9 0.024 6E-07 36.1 10.4 144 223-392 8-157 (182)
407 COG0703 AroK Shikimate kinase 96.8 0.048 1.2E-06 33.8 11.4 142 225-392 2-150 (172)
408 COG2804 PulE Type II secretory 96.8 0.0019 4.8E-08 44.0 4.1 96 504-605 255-354 (500)
409 KOG2035 consensus 96.7 0.01 2.6E-07 38.7 7.8 195 201-423 10-232 (351)
410 COG1485 Predicted ATPase [Gene 96.7 0.022 5.6E-07 36.3 9.3 105 506-632 65-176 (367)
411 PRK13894 conjugal transfer ATP 96.7 0.0043 1.1E-07 41.4 5.5 23 227-249 151-173 (320)
412 PRK11889 flhF flagellar biosyn 96.7 0.0035 8.8E-08 42.1 5.0 95 505-601 239-347 (436)
413 TIGR00678 holB DNA polymerase 96.7 0.064 1.6E-06 32.9 12.1 146 215-379 3-192 (216)
414 TIGR01846 type_I_sec_HlyB type 96.7 0.0013 3.4E-08 45.1 2.8 78 508-588 491-631 (703)
415 smart00487 DEXDc DEAD-like hel 96.7 0.018 4.7E-07 36.8 8.6 21 508-528 25-45 (201)
416 PRK11823 DNA repair protein Ra 96.6 0.00051 1.3E-08 48.1 0.5 195 210-418 76-296 (454)
417 PRK06696 uridine kinase; Valid 96.6 0.0059 1.5E-07 40.4 5.9 61 483-549 8-71 (227)
418 PRK10938 putative molybdenum t 96.6 0.0075 1.9E-07 39.6 6.4 20 509-528 288-307 (490)
419 TIGR00368 TIGR00368 Mg chelata 96.6 0.00024 6.1E-09 50.4 -1.4 120 190-335 189-328 (505)
420 PRK12726 flagellar biosynthesi 96.6 0.0072 1.8E-07 39.8 6.1 32 508-539 207-243 (407)
421 PRK08939 primosomal protein Dn 96.6 0.074 1.9E-06 32.5 11.9 124 208-350 136-271 (306)
422 KOG1514 consensus 96.6 0.022 5.6E-07 36.3 8.5 249 185-458 380-661 (767)
423 cd03214 ABC_Iron-Siderophores_ 96.6 0.013 3.3E-07 37.9 7.3 20 509-528 27-46 (180)
424 PRK10436 hypothetical protein; 96.5 0.0034 8.7E-08 42.1 4.2 96 504-605 212-311 (461)
425 TIGR01818 ntrC nitrogen regula 96.5 0.016 4.1E-07 37.2 7.4 181 205-421 136-346 (471)
426 cd03246 ABCC_Protease_Secretio 96.5 0.0061 1.6E-07 40.3 5.2 69 508-587 28-125 (173)
427 cd04157 Arl6 Arl6 subfamily. 96.5 0.011 2.9E-07 38.4 6.4 20 227-246 1-20 (162)
428 PRK07952 DNA replication prote 96.3 0.031 7.8E-07 35.2 8.1 69 226-305 97-168 (242)
429 PRK00771 signal recognition pa 96.3 0.027 6.8E-07 35.7 7.7 26 226-251 98-123 (433)
430 cd00267 ABC_ATPase ABC (ATP-bi 96.3 0.0099 2.5E-07 38.8 5.5 89 508-601 26-128 (157)
431 PRK00091 miaA tRNA delta(2)-is 96.3 0.0044 1.1E-07 41.3 3.6 39 225-273 4-42 (304)
432 PRK05917 DNA polymerase III su 96.3 0.11 2.7E-06 31.4 18.2 167 228-422 22-205 (290)
433 pfam05729 NACHT NACHT domain. 96.3 0.024 6E-07 36.1 7.3 106 509-628 2-130 (165)
434 cd01121 Sms Sms (bacterial rad 96.3 0.0094 2.4E-07 38.9 5.1 182 227-419 83-290 (372)
435 TIGR01420 pilT_fam twitching m 96.3 0.0068 1.7E-07 39.9 4.4 180 504-733 124-329 (350)
436 PRK10867 signal recognition pa 96.2 0.025 6.3E-07 35.9 7.2 25 227-251 102-126 (453)
437 KOG0991 consensus 96.2 0.019 4.9E-07 36.7 6.6 118 477-631 27-157 (333)
438 pfam00931 NB-ARC NB-ARC domain 96.2 0.022 5.5E-07 36.3 6.9 122 483-625 2-136 (285)
439 PRK03846 adenylylsulfate kinas 96.2 0.009 2.3E-07 39.1 4.9 41 504-545 22-65 (198)
440 cd03229 ABC_Class3 This class 96.2 0.017 4.3E-07 37.1 6.2 20 509-528 28-47 (178)
441 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.2 0.025 6.4E-07 35.9 7.1 93 509-627 28-128 (144)
442 pfam02562 PhoH PhoH-like prote 96.2 0.0092 2.3E-07 39.0 4.8 34 480-528 7-40 (205)
443 KOG1808 consensus 96.2 0.12 3.1E-06 30.9 21.9 134 482-627 421-561 (1856)
444 TIGR03158 cas3_cyano CRISPR-as 96.2 0.11 2.7E-06 31.4 10.1 51 230-295 19-69 (357)
445 PRK13949 shikimate kinase; Pro 96.1 0.13 3.3E-06 30.8 10.5 68 227-299 3-74 (169)
446 PRK03839 putative kinase; Prov 96.1 0.11 2.8E-06 31.3 10.0 37 510-548 3-39 (180)
447 cd04154 Arl2 Arl2 subfamily. 96.1 0.032 8.3E-07 35.1 7.2 27 221-247 10-36 (173)
448 cd03115 SRP The signal recogni 96.1 0.031 8E-07 35.2 7.2 37 228-269 3-39 (173)
449 COG2607 Predicted ATPase (AAA+ 96.1 0.13 3.4E-06 30.7 15.6 195 478-716 61-266 (287)
450 TIGR00958 3a01208 antigen pept 96.1 0.014 3.5E-07 37.8 5.3 91 509-601 561-718 (770)
451 pfam01745 IPT Isopentenyl tran 96.1 0.0065 1.7E-07 40.1 3.5 22 228-249 4-25 (232)
452 cd03227 ABC_Class2 ABC-type Cl 96.0 0.077 2E-06 32.4 8.9 110 228-347 24-145 (162)
453 PRK13635 cbiO cobalt transport 96.0 0.034 8.7E-07 34.9 7.1 21 228-248 36-56 (279)
454 PRK08533 flagellar accessory p 96.0 0.049 1.3E-06 33.8 7.9 18 512-529 29-46 (230)
455 COG1373 Predicted ATPase (AAA+ 96.0 0.15 3.7E-06 30.4 13.0 170 208-418 21-191 (398)
456 KOG0482 consensus 96.0 0.15 3.7E-06 30.4 11.5 233 466-747 331-629 (721)
457 cd03247 ABCC_cytochrome_bd The 96.0 0.027 7E-07 35.6 6.4 44 509-554 30-78 (178)
458 COG1936 Predicted nucleotide k 96.0 0.025 6.5E-07 35.8 6.2 151 510-688 3-154 (180)
459 PRK13652 cbiO cobalt transport 96.0 0.016 4.1E-07 37.2 5.1 19 228-246 33-51 (277)
460 KOG0477 consensus 95.9 0.042 1.1E-06 34.2 7.2 136 473-626 445-598 (854)
461 PRK13851 type IV secretion sys 95.9 0.0095 2.4E-07 38.9 3.9 87 509-603 164-260 (343)
462 COG1419 FlhF Flagellar GTP-bin 95.9 0.046 1.2E-06 34.0 7.3 43 223-270 201-245 (407)
463 pfam00448 SRP54 SRP54-type pro 95.9 0.043 1.1E-06 34.2 7.2 37 228-269 4-40 (196)
464 TIGR02782 TrbB_P P-type conjug 95.9 0.048 1.2E-06 33.9 7.4 115 186-377 114-232 (315)
465 PRK04220 2-phosphoglycerate ki 95.9 0.018 4.5E-07 37.0 5.1 40 500-540 86-126 (306)
466 TIGR02533 type_II_gspE general 95.9 0.0086 2.2E-07 39.2 3.5 207 504-748 242-485 (495)
467 PTZ00133 ADP-ribosylation fact 95.9 0.13 3.4E-06 30.7 9.4 28 219-246 11-38 (182)
468 COG1124 DppF ABC-type dipeptid 95.9 0.036 9.2E-07 34.7 6.6 38 508-545 34-73 (252)
469 pfam01583 APS_kinase Adenylyls 95.9 0.015 3.7E-07 37.6 4.5 36 509-544 4-42 (157)
470 pfam00025 Arf ADP-ribosylation 95.8 0.019 4.7E-07 36.8 5.0 32 216-247 5-36 (174)
471 cd01882 BMS1 Bms1. Bms1 is an 95.8 0.051 1.3E-06 33.7 7.3 97 229-342 43-142 (225)
472 KOG1942 consensus 95.8 0.015 3.7E-07 37.5 4.5 118 578-736 298-415 (456)
473 cd04153 Arl5_Arl8 Arl5/Arl8 su 95.8 0.052 1.3E-06 33.6 7.3 41 215-255 5-45 (174)
474 pfam04851 ResIII Type III rest 95.8 0.02 5.2E-07 36.5 5.2 61 224-309 17-77 (103)
475 TIGR02329 propionate_PrpR prop 95.8 0.03 7.5E-07 35.4 6.0 222 478-731 320-567 (658)
476 pfam05621 TniB Bacterial TniB 95.8 0.032 8E-07 35.2 6.1 111 473-588 30-157 (302)
477 COG1066 Sms Predicted ATP-depe 95.8 0.031 8E-07 35.2 6.1 175 227-419 94-300 (456)
478 KOG0055 consensus 95.8 0.095 2.4E-06 31.7 8.5 43 227-271 381-425 (1228)
479 cd03283 ABC_MutS-like MutS-lik 95.8 0.006 1.5E-07 40.3 2.4 126 224-354 24-159 (199)
480 cd03299 ABC_ModC_like Archeal 95.8 0.031 7.8E-07 35.3 6.0 20 509-528 27-46 (235)
481 TIGR00174 miaA tRNA delta(2)-i 95.8 0.0075 1.9E-07 39.7 2.8 66 228-303 2-95 (307)
482 KOG0480 consensus 95.8 0.18 4.6E-06 29.7 15.2 228 465-712 333-588 (764)
483 COG0324 MiaA tRNA delta(2)-iso 95.7 0.011 2.9E-07 38.4 3.5 76 226-302 4-98 (308)
484 PRK05541 adenylylsulfate kinas 95.7 0.019 4.9E-07 36.7 4.7 36 509-544 9-47 (176)
485 PRK09302 circadian clock prote 95.7 0.036 9.1E-07 34.8 5.9 20 509-528 268-287 (501)
486 PRK13642 cbiO cobalt transport 95.7 0.064 1.6E-06 33.0 7.2 20 228-247 36-55 (277)
487 PRK00625 shikimate kinase; Pro 95.6 0.2 5.1E-06 29.4 12.9 129 227-392 2-148 (173)
488 COG3604 FhlA Transcriptional r 95.6 0.018 4.7E-07 36.9 4.3 114 203-343 222-368 (550)
489 TIGR03608 L_ocin_972_ABC putat 95.6 0.032 8.1E-07 35.1 5.5 20 509-528 26-45 (206)
490 PRK03839 putative kinase; Prov 95.6 0.052 1.3E-06 33.6 6.6 59 228-298 3-68 (180)
491 KOG0058 consensus 95.6 0.03 7.6E-07 35.3 5.4 36 509-544 496-536 (716)
492 CHL00026 ycf2 Ycf2 95.6 0.11 2.7E-06 31.4 8.1 108 509-628 1632-1785(2286)
493 pfam08423 Rad51 Rad51. Rad51 i 95.6 0.11 2.9E-06 31.1 8.3 36 504-539 39-84 (261)
494 cd03222 ABC_RNaseL_inhibitor T 95.6 0.028 7.2E-07 35.5 5.2 84 509-604 27-122 (177)
495 PRK13833 conjugal transfer pro 95.6 0.029 7.4E-07 35.4 5.2 51 194-251 120-170 (323)
496 TIGR02538 type_IV_pilB type IV 95.6 0.0052 1.3E-07 40.8 1.3 65 504-585 323-404 (577)
497 pfam00625 Guanylate_kin Guanyl 95.6 0.14 3.6E-06 30.5 8.7 22 228-249 4-25 (182)
498 pfam06414 Zeta_toxin Zeta toxi 95.6 0.017 4.4E-07 37.0 4.0 46 501-547 7-53 (191)
499 cd03223 ABCD_peroxisomal_ALDP 95.6 0.095 2.4E-06 31.7 7.8 20 509-528 29-48 (166)
500 TIGR00455 apsK adenylylsulfate 95.6 0.017 4.3E-07 37.1 3.9 110 506-679 17-136 (187)
No 1
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=100.00 E-value=0 Score=2162.47 Aligned_cols=750 Identities=55% Similarity=0.894 Sum_probs=717.4
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCCCCC------CCC
Q ss_conf 43899999999999999828995119999999820746899999859-99899999999996413654577------888
Q gi|254780163|r 4 FSENLEKVLHQALVLANERNHEYATLEHLLLALIDDSDAAIVMLSCN-VDLKVLKNNLLNYIDNDSSNKLK------NGF 76 (798)
Q Consensus 4 fS~~a~~vL~~A~~lAk~~~H~~Vt~EHLLLaLL~d~~~~~iL~~~g-iD~~~Lk~~Le~~L~~~~~~~~~------~~~ 76 (798)
+|++++++|..|.++|+.++|+|||+|||||||+.++.+..+|+.|| +|++.|++.|++||++..+.... +..
T Consensus 1 ~~~~l~~~L~~A~~~AK~~~HEf~T~EH~Llal~~~~~~~~il~~cgd~d~~~L~~~L~~yl~~~~~~~~~~qlGyGg~~ 80 (774)
T TIGR02639 1 ISKELERILSEALEEAKERRHEFVTLEHLLLALLDDNEAIEILEECGDGDVELLRKKLEDYLEENLEVLEEEQLGYGGSE 80 (774)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 98789999999999998618942438999999703767899998533311899999999987513887760224468886
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 67764698999999999999998099812599987878737742999999984999899999998300000001112110
Q gi|254780163|r 77 RVECKPTSSFQRVVQRAVLHVQSTGRGIVTGANILVALFSEPDSHATYFLQEQEMTLYDAVNFISHGISKRKEFANFQSK 156 (798)
Q Consensus 77 ~~ei~~S~~l~rVL~~A~~~A~~~G~~~I~~eHLLLALL~e~ds~a~~iL~~~gis~~~v~~~i~~~~~~~~~~~~~~~~ 156 (798)
..+|.+|-.+++||++|..+.++.++++|+..|||.||+.|.+|+|+|+|+++|+++.++.++|+|.+............
T Consensus 81 ~~ep~~T~g~~~Viq~A~~h~~s~~~~~~~~gD~Lvalf~E~~S~a~Y~Lk~qgi~Rl~~~~~ish~i~~~~~~~~~~~~ 160 (774)
T TIGR02639 81 EEEPEQTVGVQRVIQRALLHVKSAGKKEIDIGDLLVALFDEEDSHASYFLKSQGITRLDILNYISHGISKDDKKDQLGEE 160 (774)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHEECCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 55630014478999999998531488602311100111027861310203321786999999741455457875633122
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 24432100000124444444555544553035654425887754861122217899999999862267787489667641
Q gi|254780163|r 157 LNVDGSSAGSDGEGFVNDYQAKTDLNLFPALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGV 236 (798)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LdkFg~DLTe~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gv 236 (798)
...+..-.................+....+|++||+|||++|++|||||+||||+||+|+|||||||+|||||+||||||
T Consensus 161 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~aL~~yt~~Lt~~A~~GkiDPLIGRE~EleRtiQvLCRR~KNNPl~VGEPGV 240 (774)
T TIGR02639 161 AAEEEEELQEEKEDSAREEDTDKAKKQQDALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGV 240 (774)
T ss_pred CCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCC
T ss_conf 23420143146777876656652004656998841548999860887873456688742333203456788720448886
Q ss_pred HHHHHHHHHHHHHHCC-CCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCE-EEEECCHHHHHCCCCC
Q ss_conf 1668999999998548-9883452014455404675306343123789999999872038983-9997361663015544
Q gi|254780163|r 237 GKTAIAEGFAKQIVDG-MVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANA-ILYIDEIHTLVGAGSA 314 (798)
Q Consensus 237 Gktaive~la~~i~~~-~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~-ilfideih~ligag~~ 314 (798)
||||||||||+||+++ .||+.|+|.+||+||||+|+||||||||||+|||.||+|+++.+|. ||||||||||||||++
T Consensus 241 GKTAI~EGLA~~I~~~~kvPe~Lkn~~IY~LDmG~LLAGTKYRGDFE~RLK~V~~Ei~~~~~anILFIDEIHTIVGAGAT 320 (774)
T TIGR02639 241 GKTAIVEGLAQRIAEGQKVPEVLKNAKIYSLDMGTLLAGTKYRGDFEERLKAVVSEIEKEPNANILFIDEIHTIVGAGAT 320 (774)
T ss_pred CHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCC
T ss_conf 44899999999864156467002478345404345641024542478999999999852899954664110103317878
Q ss_pred CCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCH
Q ss_conf 43447778888766302660388730489999985201114320014430687868999999861276654103512111
Q gi|254780163|r 315 SGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKE 394 (798)
Q Consensus 315 ~g~~~d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~ 394 (798)
|||||||||||||||+.|.|||||+||++|||+|||||+||.||||+|.|+|||.++|+.||+|||++||.||+|+|+++
T Consensus 321 SGGsmDASNLLKPaL~~G~iRCIGsTTy~EY~~~FeKDrALsRRFQKIDv~EPs~eet~~ILkGLk~~YE~fH~V~Y~~e 400 (774)
T TIGR02639 321 SGGSMDASNLLKPALASGKIRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEQYEEFHHVKYSDE 400 (774)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEECCCCHHHHHCHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCEECCHH
T ss_conf 75155244321125307877862265248641110102021654233117957888999999865542013250113869
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CCHHHHHHHHHHCCCCCCHHHH
Q ss_conf 78999998654201555646798899865333321144322113--------------6578999866310245310111
Q gi|254780163|r 395 AIRAAVQLSVRHFTSRKLPDKAIDVIDEAGASQILQPLSKRRKF--------------ITEKDIKKTIASMNRSIHTTSF 460 (798)
Q Consensus 395 al~~av~ls~ryi~~r~lPdkAidllDea~a~~~~~~~~~~~~~--------------~~~~~i~~~~~~~~~gip~~~~ 460 (798)
||++||.||+|||.|||||||||||||||||.+++....+++.. |+.+||.++|++|+ +||...+
T Consensus 401 al~~Av~LS~ryI~DRfLPDKAIDviDEaGA~~~l~~~~~~~~~eadekGleetalPev~~~diE~vvak~a-~iP~~~~ 479 (774)
T TIGR02639 401 ALEAAVELSARYINDRFLPDKAIDVIDEAGAAFRLRAKAKKKANEADEKGLEETALPEVNVKDIEEVVAKMA-KIPVKTV 479 (774)
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHH-CCCCEEE
T ss_conf 999999998886025789854322889999999971202776432011253000478785444999998871-8994154
Q ss_pred HCCH-HHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 0011-233421000024665345899999999987752044565787406886143200388999998730477337720
Q gi|254780163|r 461 SRDD-DSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFD 539 (798)
Q Consensus 461 ~~~~-~~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~d 539 (798)
+.+| +++|.+|+.+|+++|+|||+||++|+.+|+||||||.+|+||+|||||+|||||||||+||+||..++.+|+|||
T Consensus 480 s~ddD~~~L~~L~~~L~~kIfGQD~AI~~lv~aiK~SrAGl~~~nkP~GSFLF~GPTGVGKTElak~LA~~LGv~l~RFD 559 (774)
T TIGR02639 480 SSDDDREKLKNLEKELKAKIFGQDEAIEQLVSAIKRSRAGLGEPNKPVGSFLFVGPTGVGKTELAKQLAEELGVHLLRFD 559 (774)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCHHCCCC
T ss_conf 26447988720447630131515899999999999987424778881688886479896257889999997082001046
Q ss_pred HHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEE
Q ss_conf 68861246530110478000256444310035551585177740445502899999999877750217799776125429
Q gi|254780163|r 540 MSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVI 619 (798)
Q Consensus 540 msey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~i 619 (798)
||||||+|+||||||||||||||||||+||+||||+||||||||||||||||++|+||||||.++||||+||++||||+|
T Consensus 560 MSEYmEKHTVsRLIGsPPGYVGfEqGGLLT~AvrK~P~cVLLLDEIEKAHpDI~NILLQVMD~AtLTDN~GrKaDFRNVI 639 (774)
T TIGR02639 560 MSEYMEKHTVSRLIGSPPGYVGFEQGGLLTDAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVI 639 (774)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEECCEE
T ss_conf 50446899998741688885131677721223312885354234666631336667876633543405888576311368
Q ss_pred EEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 99942421455330368988211148899999872887881776828962889999999999999999999998669889
Q gi|254780163|r 620 LIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISF 699 (798)
Q Consensus 620 ii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l 699 (798)
+|||||+||.+++++.+||..+...+...++++++|+|||+||||.||+|+||+.+.+.+|+.++|.+|+.+|.+|+|.|
T Consensus 640 LIMTSNaGa~E~~~~~iGF~~~~~~~~~~~Aikk~F~PEFRNRLDaii~F~~L~~~~~~~i~~K~l~el~~~L~eK~v~l 719 (774)
T TIGR02639 640 LIMTSNAGAREMSKNPIGFGGERVEDKSEKAIKKLFSPEFRNRLDAIIAFNDLSEEVAEKIVKKFLDELQKQLNEKNVEL 719 (774)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf 88403700102367764425554123348889731587420133464416998899999999999999997553065378
Q ss_pred EECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE
Q ss_conf 99889999999718981015326799999862359999996296768884899996
Q gi|254780163|r 700 HFSEEVINWLVSHGYDVKMGARPLERIIKEHVKVPLADEILFGKLKKGGGVVKVSL 755 (798)
Q Consensus 700 ~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~g~~~~~v~~ 755 (798)
+++++|+.||+++|||++||||||.|+|+++|.++|+++||||+|++|+. |+|++
T Consensus 720 ~l~~~a~~~LA~KGY~~efGARpl~R~I~~~i~~~L~dEILFG~LKkGG~-v~~~~ 774 (774)
T TIGR02639 720 ELTDDAIKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEILFGKLKKGGE-VKISL 774 (774)
T ss_pred EECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCE-EEEEC
T ss_conf 76478999998636781105544899988741257654420570016726-88738
No 2
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=0 Score=1872.78 Aligned_cols=727 Identities=42% Similarity=0.694 Sum_probs=674.9
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHH--HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 343899999999999999828995119999999820746--899999859998999999999964136545778886776
Q gi|254780163|r 3 FFSENLEKVLHQALVLANERNHEYATLEHLLLALIDDSD--AAIVMLSCNVDLKVLKNNLLNYIDNDSSNKLKNGFRVEC 80 (798)
Q Consensus 3 mfS~~a~~vL~~A~~lAk~~~H~~Vt~EHLLLaLL~d~~--~~~iL~~~giD~~~Lk~~Le~~L~~~~~~~~~~~~~~ei 80 (798)
.||++++++|..|+++|++++|+||++||||++|+.+++ +..+|..+|+|.+.++++++.++..... ....++
T Consensus 4 kfT~~a~~~L~~A~~~A~~~~h~~V~~eHLLlaLl~~~~~~~~~~L~~~~vd~~~l~~~l~~~~~~~~~-----~~~~~~ 78 (823)
T CHL00095 4 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAARALKSLNVNLKDARKEVEKYIGRGSG-----FVAVEI 78 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCC-----CCCCCC
T ss_conf 366999999999999999859894089999999974998479999998699999999999999842699-----887886
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCC
Q ss_conf 46989999999999999980998125999878787377429999999849998999999983000000011121102443
Q gi|254780163|r 81 KPTSSFQRVVQRAVLHVQSTGRGIVTGANILVALFSEPDSHATYFLQEQEMTLYDAVNFISHGISKRKEFANFQSKLNVD 160 (798)
Q Consensus 81 ~~S~~l~rVL~~A~~~A~~~G~~~I~~eHLLLALL~e~ds~a~~iL~~~gis~~~v~~~i~~~~~~~~~~~~~~~~~~~~ 160 (798)
++|+.++++|++|+.+|..+|+++|+++|||+||+.+.++++.++|..++++...+.+.+..........
T Consensus 79 ~~s~~~~~vL~~A~~~a~~~~~~~I~~ehLllall~e~~~~a~~iL~~~gi~~~~~~~~~~~~~~~~~~~---------- 148 (823)
T CHL00095 79 PFTPRAKRVLELSLEEARILGHNYIGTEHLLLGLIREGEGVAARVLENLNVDLPKVRSLIINLIGEIAEV---------- 148 (823)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC----------
T ss_conf 8887999999999999998299804399999999708974799999987999999999999984545655----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf 21000001244444445555445530356544258877548611222178999999998622677874896676411668
Q gi|254780163|r 161 GSSAGSDGEGFVNDYQAKTDLNLFPALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTA 240 (798)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~LdkFg~DLTe~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGkta 240 (798)
..........+++|++||+|||++|++|++|||||||+||+|++||||||+||||||||||||||||
T Consensus 149 -------------~~~~~~~~~~~~~L~ky~~dLT~~A~~GklDpvIGRd~EI~r~i~IL~RR~KNNpiLvGepGVGKTA 215 (823)
T CHL00095 149 -------------ILGGGTSREKTPTLEEFGNNLTKMAYEGNLDPVIGRDKEIERVIQILGRRTKNNPILIGEPGVGKTA 215 (823)
T ss_pred -------------CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCHHH
T ss_conf -------------6788666656556999978889999838999875956999999999977324885023799987999
Q ss_pred HHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCC
Q ss_conf 99999999854898834520144554046753063431237899999998720389839997361663015544434477
Q gi|254780163|r 241 IAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVD 320 (798)
Q Consensus 241 ive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d 320 (798)
||||||+||++|+||+.|+|++||+||+++|+|||+||||||+|||.|++++++++++||||||||||||||+++| +||
T Consensus 216 IvEGLA~rI~~g~VP~~L~~~~i~sLDl~~L~AGtkyRGeFEeRlk~il~ei~~~~~iILFIDEiHtlvGaG~~~g-~~D 294 (823)
T CHL00095 216 IAEGLAQRIANRDVPDILEDKLVLTLDIGLLLAGTKYRGEFEERIKKIMDEIKKANNIILVIDEIHTLIGAGAAEG-AID 294 (823)
T ss_pred HHHHHHHHHHCCCCCHHHCCCCEEEEEHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCCC-CHH
T ss_conf 9999999760889986875993688428877533422267999999999999857986999735165328897666-431
Q ss_pred HHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHH
Q ss_conf 78888766302660388730489999985201114320014430687868999999861276654103512111789999
Q gi|254780163|r 321 ASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAV 400 (798)
Q Consensus 321 ~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av 400 (798)
|||+|||+||||+|||||||||+|||||||||+||+||||+|.|+|||.++|+.||+|++++||.||+|+|+|+||++||
T Consensus 295 aaNlLKPaLarGel~~IGATT~~EYrk~iEkD~AL~RRFq~V~V~EPs~e~t~~IL~gl~~~yE~~H~V~i~d~Ai~aav 374 (823)
T CHL00095 295 AANILKPALARGKLQCIGATTLEEYRKHIEKDPALERRFQPVYVGEPSVEETIEILLGLRDRYEKHHNLSISDKALEAAA 374 (823)
T ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 78876578648986699707889999985305889962684102899879999999999999987508850478999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
Q ss_conf 986542015556467988998653333211443-----------------------------------------------
Q gi|254780163|r 401 QLSVRHFTSRKLPDKAIDVIDEAGASQILQPLS----------------------------------------------- 433 (798)
Q Consensus 401 ~ls~ryi~~r~lPdkAidllDea~a~~~~~~~~----------------------------------------------- 433 (798)
+||.|||++|+||||||||||||||++++....
T Consensus 375 ~LS~RYi~dr~LPDKAIDllDeA~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (823)
T CHL00095 375 KLSDQYIKDRFLPDKAIDLLDEAGSRVRLINKQLPPAARELDKELRHILKDKDEAIRSQDFETAKQLRDREMEVRTQIAA 454 (823)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 98776403777821788889999899998732586789999999999999999999674499999999889999999999
Q ss_pred ------------HHHCCCCHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCC
Q ss_conf ------------22113657899986631024531011100112334210000246653458999999999877520445
Q gi|254780163|r 434 ------------KRRKFITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLS 501 (798)
Q Consensus 434 ------------~~~~~~~~~~i~~~~~~~~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~ 501 (798)
.....|+.+||+++|+.|+ |||+.+++.+|.++|++|+..|+++||||++||++|+++|+|+|+||+
T Consensus 455 ~~~~~~~~~~~~~~~~~v~~~dI~~vvs~~t-giPv~~~~~~e~~~l~~le~~L~~~ViGQd~AI~~vs~ai~rsraGl~ 533 (823)
T CHL00095 455 MKQSKKTEEELQKEVPVVTEKDIAEIVSAWT-GIPVNKLTKSESEKLIHMEETLHKRIIGQDEAVVAVSKAIRRARVGLK 533 (823)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-CCCHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 9999874044323677207999999999986-898476334588999878887877840769999999999999970899
Q ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHH---HHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCE
Q ss_conf 657874068861432003889999987---30477337720688612465301104780002564443100355515851
Q gi|254780163|r 502 DPNKPIGCYVFSGPTGVGKTEISKQLA---FALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYS 578 (798)
Q Consensus 502 ~~~rP~g~flf~GptGvGKTelak~la---~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~s 578 (798)
+|+||+|||||+||||||||||||+|| |+++++|||||||||||+||||||||||||||||+|||+|||+||++|||
T Consensus 534 ~~~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~~liR~DMSEy~E~hsvsrLIGaPPGYVGy~eGG~LTeaVrr~Pys 613 (823)
T CHL00095 534 NPNRPIASFIFCGPTGVGKTELTKALASYFFGSEEAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYT 613 (823)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCE
T ss_conf 89997468998789988779999999999747820258853510155420767458998766778788201988719986
Q ss_pred EEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHC--CCCCCCCCC------------H
Q ss_conf 77740445502899999999877750217799776125429999424214553303--689882111------------4
Q gi|254780163|r 579 VVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKA--RIGFGSSRN------------D 644 (798)
Q Consensus 579 Vvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~--~~g~~~~~~------------~ 644 (798)
||||||||||||||||+||||||+|+|||++||+|||+|||||||||+||+.+.+. +.||..... .
T Consensus 614 VvLfDEIEKAHpdV~nilLQvlDdG~LtD~~Gr~vdF~NtIIImTSNlGs~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~ 693 (823)
T CHL00095 614 VVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIEKGGGSLGFKLLEDGTKLDEKQYKRLS 693 (823)
T ss_pred EEEECHHHHCCHHHHHHHHHHCCCCCCCCCCCCEEECEEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99862131138899998876516884348999988431039997165055888741344343334454322023589999
Q ss_pred HHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 88999998728878817768289628899999999999999999999986698899988999999971898101532679
Q gi|254780163|r 645 DADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLE 724 (798)
Q Consensus 645 ~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~ 724 (798)
+.++++++++|+|||+||||+||+|+||+.+++.+|++++|.++.+||.+++|.|++++++++||+++||||.||||||+
T Consensus 694 ~~v~~~l~~~F~PEFlnRiDeii~F~~L~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~a~~~l~~~gy~~~~GARpl~ 773 (823)
T CHL00095 694 NLVNEELKQYFRPEFLNRLDEIIVFRPLTKDEVWEIAEIMLKELFKRLNNQGIQLEVDERFKTLLAKEGYNPLYGARPLR 773 (823)
T ss_pred HHHHHHHHHHCCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 99999998437987873278278618999999999999999999999996898599888999999995879776813688
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCC
Q ss_conf 999986235999999629676888489999607866
Q gi|254780163|r 725 RIIKEHVKVPLADEILFGKLKKGGGVVKVSLNPDKS 760 (798)
Q Consensus 725 r~i~~~i~~~la~~il~~~~~~g~~~~~v~~~~~~~ 760 (798)
|+|+++|++|||++||+|.+.+|++ ++|+++.+..
T Consensus 774 R~I~~~i~~~ls~~il~g~~~~g~~-v~v~~~~~g~ 808 (823)
T CHL00095 774 RAIMRLLEDPLAEEVLSFKIKPGDS-LVVDVDKEGK 808 (823)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCE-EEEEECCCCC
T ss_conf 9999998899999997488899698-9999758997
No 3
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=0 Score=1866.43 Aligned_cols=744 Identities=51% Similarity=0.852 Sum_probs=703.4
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 34389999999999999982899511999999982074689999985999899999999996413654577888677646
Q gi|254780163|r 3 FFSENLEKVLHQALVLANERNHEYATLEHLLLALIDDSDAAIVMLSCNVDLKVLKNNLLNYIDNDSSNKLKNGFRVECKP 82 (798)
Q Consensus 3 mfS~~a~~vL~~A~~lAk~~~H~~Vt~EHLLLaLL~d~~~~~iL~~~giD~~~Lk~~Le~~L~~~~~~~~~~~~~~ei~~ 82 (798)
|||++++.+|+.|+++|++++|+||++||||++|++++.+..+|..||+|++.++++++.++.+..+..........+.+
T Consensus 1 m~s~~l~~~L~~A~~~A~~~~H~~v~~EHlLlaLl~~~~~~~~L~~~~~d~~~l~~~l~~~i~~~~~~~~~~~~~~~~~~ 80 (758)
T PRK11034 1 MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQP 80 (758)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 98979999999999999982998322999999998694189999985999999999999999725887788877567787
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
Q ss_conf 98999999999999998099812599987878737742999999984999899999998300000001112110244321
Q gi|254780163|r 83 TSSFQRVVQRAVLHVQSTGRGIVTGANILVALFSEPDSHATYFLQEQEMTLYDAVNFISHGISKRKEFANFQSKLNVDGS 162 (798)
Q Consensus 83 S~~l~rVL~~A~~~A~~~G~~~I~~eHLLLALL~e~ds~a~~iL~~~gis~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~ 162 (798)
|..++++|++|..+++.+|+++|+++|+|+||+.+.++++.++|.+++++..++.+++.+............
T Consensus 81 t~~~~rvl~~A~~~a~~~g~~~v~~~~lLlall~e~~~~a~~~L~~~~i~~~~~~~~i~~~~~~~~~~~~~~-------- 152 (758)
T PRK11034 81 TLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPSQSSD-------- 152 (758)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCC--------
T ss_conf 778999999999999983998304999999997178558999999779988999999972243344333445--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH
Q ss_conf 00000124444444555544553035654425887754861122217899999999862267787489667641166899
Q gi|254780163|r 163 SAGSDGEGFVNDYQAKTDLNLFPALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIA 242 (798)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~LdkFg~DLTe~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaiv 242 (798)
..............+.|++||+|||++|++||||||||||+||+|+|||||||+||||||||||||||||||
T Consensus 153 --------~~~~~~~~~~~~~~~~L~ky~~dLt~~Ar~gklDPviGR~~Ei~r~i~iL~Rr~KNNpiLvGepGVGKTAIv 224 (758)
T PRK11034 153 --------PGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIA 224 (758)
T ss_pred --------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHH
T ss_conf --------556766533444235899985647999982899987384899999999997632589602169998699999
Q ss_pred HHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHH
Q ss_conf 99999985489883452014455404675306343123789999999872038983999736166301554443447778
Q gi|254780163|r 243 EGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDAS 322 (798)
Q Consensus 243 e~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~a 322 (798)
||||++|++|+||+.|+|++||+||+++|+|||+||||||+|||.|++|+++.+++||||||||||||||+++|++||||
T Consensus 225 EGLA~rI~~g~VP~~L~~~~i~~Ldl~~LiAGtkyRGefEeRlk~vi~e~~~~~~~ILFIDEiH~ivGaG~~~gg~~Daa 304 (758)
T PRK11034 225 EGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAA 304 (758)
T ss_pred HHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCHH
T ss_conf 99999997389976558988998458778616864154999999999999857985999804344226887677764678
Q ss_pred HHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHH
Q ss_conf 88876630266038873048999998520111432001443068786899999986127665410351211178999998
Q gi|254780163|r 323 NLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQL 402 (798)
Q Consensus 323 n~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~l 402 (798)
|+|||+|+||+|||||||||+|||||||||+||+||||+|.|+|||.++|+.||+|++++||.||+|+|+|+||++||+|
T Consensus 305 NlLKP~LarG~l~~IgaTT~~EYrk~iekD~AL~RRFq~V~V~EPs~e~t~~IL~gl~~~yE~~H~v~~~d~al~~av~L 384 (758)
T PRK11034 305 NLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVEL 384 (758)
T ss_pred HHHHHHHHCCCCEEEEECCHHHHHHCCCCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHH
T ss_conf 87457874697239994377998750321478884282653189998999999998999873236957743899999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCH
Q ss_conf 65420155564679889986533332114432211365789998663102453101110011233421000024665345
Q gi|254780163|r 403 SVRHFTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQ 482 (798)
Q Consensus 403 s~ryi~~r~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ 482 (798)
|.|||++|+||||||||||||||+.++....++++.++..||..++++|+ |||+.+++.++.++|++|+..|+++||||
T Consensus 385 s~rYi~dr~lPDKAIdllDea~a~~~l~~~~~~~~~v~~~di~~vv~~~t-~ip~~~~~~~~~~~l~~le~~l~~~viGQ 463 (758)
T PRK11034 385 AVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA-RIPEKSVSQSDRDTLKNLGDRLKMLVFGQ 463 (758)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 97650268896199999999988875134566316589999999998750-36076776779999998999987787454
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCC
Q ss_conf 89999999998775204456578740688614320038899999873047733772068861246530110478000256
Q gi|254780163|r 483 EEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGF 562 (798)
Q Consensus 483 ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~ 562 (798)
++||++|+++|+++|+||++|+||+|||||+||||||||||||+||..++.+|||||||||||+|+||||||||||||||
T Consensus 464 ~~Ai~~v~~ai~~~raGL~~~~rPigsFlf~GPTGVGKTElak~LA~~L~~~lir~DMSEy~e~hsvsrLiGaPPGYVGy 543 (758)
T PRK11034 464 DKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGF 543 (758)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHCCCCCCCCCC
T ss_conf 99999999999998638889999705899978998777999999999986677214266531201477744899866676
Q ss_pred CCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCC
Q ss_conf 44431003555158517774044550289999999987775021779977612542999942421455330368988211
Q gi|254780163|r 563 GQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSR 642 (798)
Q Consensus 563 ~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~ 642 (798)
+|||+|||+||++|||||||||||||||+|||+||||||+|+|||++||+|||+|||||||||+|++++.+.++||....
T Consensus 544 ~eGG~Lte~Vr~~PysVvL~DEIEKAhpdV~nilLQvlD~G~LtD~~Gr~vdF~NtiIImTSN~Ga~~~~~~~~gf~~~~ 623 (758)
T PRK11034 544 DQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQD 623 (758)
T ss_pred CCCCCCCHHHHHCCCEEEEEHHHHHHCHHHHHHHHHHCCCCCCCCCCCCEEECEEEEEEEECCCCHHHHHHHCCCCCCCC
T ss_conf 77770128787398779973367563989999887323778301799998844001999825617487864214755420
Q ss_pred CHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHH
Q ss_conf 14889999987288788177682896288999999999999999999999866988999889999999718981015326
Q gi|254780163|r 643 NDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARP 722 (798)
Q Consensus 643 ~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~ 722 (798)
.....+++++++|+|||+||||+||+|+||+.+++.+|++++|.++.++|++++|.+++++++++||+++||||.|||||
T Consensus 624 ~~~~~~~~l~~~F~PEFlNRiD~ii~F~~L~~~~l~~Iv~~~l~~l~~rL~~~~i~l~~~~~a~~~l~~~gyd~~~GARp 703 (758)
T PRK11034 624 NSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARP 703 (758)
T ss_pred CHHHHHHHHHHHCCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCCCH
T ss_conf 35999999995479867723674786388999999999999999999999978985998899999999848894537112
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCC
Q ss_conf 799999862359999996296768884899996078665542
Q gi|254780163|r 723 LERIIKEHVKVPLADEILFGKLKKGGGVVKVSLNPDKSASSP 764 (798)
Q Consensus 723 l~r~i~~~i~~~la~~il~~~~~~g~~~~~v~~~~~~~~~~~ 764 (798)
|+|+|+++|++|||++||+|++++|++ ++|+++.++....+
T Consensus 704 l~R~I~~~i~~~La~~il~g~~~~g~~-v~v~~~~~~~~l~f 744 (758)
T PRK11034 704 MARVIQDNLKKPLANELLFGSLVDGGQ-VTVALDKEKNELTY 744 (758)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCE-EEEEEECCCCEEEE
T ss_conf 889999998899999997298889898-99999789987999
No 4
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=0 Score=1860.06 Aligned_cols=727 Identities=40% Similarity=0.688 Sum_probs=669.2
Q ss_pred CCC--CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCH--HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 973--4389999999999999982899511999999982074--689999985999899999999996413654577888
Q gi|254780163|r 1 MSF--FSENLEKVLHQALVLANERNHEYATLEHLLLALIDDS--DAAIVMLSCNVDLKVLKNNLLNYIDNDSSNKLKNGF 76 (798)
Q Consensus 1 M~m--fS~~a~~vL~~A~~lAk~~~H~~Vt~EHLLLaLL~d~--~~~~iL~~~giD~~~Lk~~Le~~L~~~~~~~~~~~~ 76 (798)
|++ ||++++++|+.|+.+|++++|.||++||||++|+.++ .+..+|..+|+|...++++++.++...+... +.
T Consensus 1 m~~~k~t~~~~~al~~A~~~A~~~~h~~v~~eHll~all~~~~~~~~~~l~~~~~d~~~l~~~l~~~l~~~~~~~---~~ 77 (857)
T PRK10865 1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVRPLLTSAGINAGQLRTDINQALNRLPQVE---GT 77 (857)
T ss_pred CCHHHCCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC---CC
T ss_conf 981553999999999999999985988435999999997699747999999869999999999999986278878---98
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 67764698999999999999998099812599987878737742999999984999899999998300000001112110
Q gi|254780163|r 77 RVECKPTSSFQRVVQRAVLHVQSTGRGIVTGANILVALFSEPDSHATYFLQEQEMTLYDAVNFISHGISKRKEFANFQSK 156 (798)
Q Consensus 77 ~~ei~~S~~l~rVL~~A~~~A~~~G~~~I~~eHLLLALL~e~ds~a~~iL~~~gis~~~v~~~i~~~~~~~~~~~~~~~~ 156 (798)
...+.+|+.+.++|+.|+..++.+++++|+++|+|+|++.+. +....+|...|++...+...+.......
T Consensus 78 ~~~~~~s~~~~~~l~~a~~~a~~~~~~~i~~~~llla~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------- 147 (857)
T PRK10865 78 GGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESR-GTLADILKAAGATTANITQAIEQMRGGE--------- 147 (857)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC-CHHHHHHHHCCCCHHHHHHHHHHHHCCC---------
T ss_conf 888087879999999999999985998242999999997188-7799999987999999999999871788---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 24432100000124444444555544553035654425887754861122217899999999862267787489667641
Q gi|254780163|r 157 LNVDGSSAGSDGEGFVNDYQAKTDLNLFPALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGV 236 (798)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LdkFg~DLTe~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gv 236 (798)
...........++|++||+|||++|++|+||||||||+||+|++||||||+||||||||||||
T Consensus 148 -----------------~~~~~~~~~~~~~L~~y~~dLt~~A~~gkldpvIGRd~EI~r~i~IL~RR~KNNpiLvGepGV 210 (857)
T PRK10865 148 -----------------SVNDQGAEDQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGV 210 (857)
T ss_pred -----------------CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCC
T ss_conf -----------------887788664236899997888999982999988582999999999970257899758789998
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHC-CCCCEEEEECCHHHHHCCCCCC
Q ss_conf 166899999999854898834520144554046753063431237899999998720-3898399973616630155444
Q gi|254780163|r 237 GKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIE-SYANAILYIDEIHTLVGAGSAS 315 (798)
Q Consensus 237 Gktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~-~~~~~ilfideih~ligag~~~ 315 (798)
||||||||||++|++|+||+.|+|++||+||+++|+|||+||||||+|||.|++++. +.+++||||||||||||||+++
T Consensus 211 GKTAIvEGLA~rI~~g~VP~~L~~~~I~~LDlg~L~AGakyRGeFEeRLk~il~ev~~~~~~iILFIDEiHtlvGaG~~~ 290 (857)
T PRK10865 211 GKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD 290 (857)
T ss_pred CHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCC
T ss_conf 89999999999998389997881690247338878614765211799999999999847898699973435433688777
Q ss_pred CCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHH
Q ss_conf 34477788887663026603887304899999852011143200144306878689999998612766541035121117
Q gi|254780163|r 316 GISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEA 395 (798)
Q Consensus 316 g~~~d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~a 395 (798)
| ++||||||||+||||+|||||||||+|||||||||+||+||||+|.|+|||.++|+.||+|++++||.||+|+|+|+|
T Consensus 291 G-~~DaaNlLKPaLaRGelr~IGATT~~EYrk~iEkD~AL~RRFq~V~V~EPs~e~ti~ILrgl~~~yE~hH~V~itdeA 369 (857)
T PRK10865 291 G-AMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPA 369 (857)
T ss_pred C-CCCHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHH
T ss_conf 7-534788867887379854999458999998713458899853710068998799999999888899873791587999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------
Q ss_conf 899999865420155564679889986533332114432-----------------------------------------
Q gi|254780163|r 396 IRAAVQLSVRHFTSRKLPDKAIDVIDEAGASQILQPLSK----------------------------------------- 434 (798)
Q Consensus 396 l~~av~ls~ryi~~r~lPdkAidllDea~a~~~~~~~~~----------------------------------------- 434 (798)
|.+||+||.|||++|+||||||||||||||++++.....
T Consensus 370 l~aAV~LS~RYI~dR~LPDKAIDLLDeA~A~vr~~~~~~p~~l~~l~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 449 (857)
T PRK10865 370 IVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELS 449 (857)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 99999986245666678148988999998888763246844689999999999999999884100778999999999999
Q ss_pred -----------------------------------------------------------------------------HHC
Q ss_conf -----------------------------------------------------------------------------211
Q gi|254780163|r 435 -----------------------------------------------------------------------------RRK 437 (798)
Q Consensus 435 -----------------------------------------------------------------------------~~~ 437 (798)
-+.
T Consensus 450 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~el~~~~ip~~e~~l~~~~~~~~~~~~~~~~ 529 (857)
T PRK10865 450 DKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRN 529 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHC
T ss_conf 99999999999999999999889999999999888899988641376677765220188999999998753001102223
Q ss_pred CCCHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCC
Q ss_conf 36578999866310245310111001123342100002466534589999999998775204456578740688614320
Q gi|254780163|r 438 FITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTG 517 (798)
Q Consensus 438 ~~~~~~i~~~~~~~~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptG 517 (798)
.|+..||+++++.|+ |||+.++..+|.++|++|+..|+++||||++||++|+++|+++|+||++|+||+|||||+||||
T Consensus 530 ~V~~~~ia~vvs~~T-gIPv~~l~~~e~~~L~~le~~L~~rViGQd~AI~~v~~aI~~sraGL~dp~rPiGsFLFlGPTG 608 (857)
T PRK10865 530 KVTDAEIAEVLARWT-GIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTG 608 (857)
T ss_pred CCCHHHHHHHHHHHH-CCCCHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCC
T ss_conf 568999999999996-8983021310589999999999878528099999999999998638999999738999868987
Q ss_pred HHHHHHHHHHH---HHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHH
Q ss_conf 03889999987---304773377206886124653011047800025644431003555158517774044550289999
Q gi|254780163|r 518 VGKTEISKQLA---FALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLN 594 (798)
Q Consensus 518 vGKTelak~la---~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~ 594 (798)
||||||||+|| |+++.+|||||||||||+||||||||||||||||+|||+|||+||++|||||||||||||||||+|
T Consensus 609 VGKTElAK~LA~~LF~~e~~liriDMSEy~E~hsVSrLiGaPPGYVGy~eGG~LTeaVRr~PySVvLfDEIEKAHpdV~n 688 (857)
T PRK10865 609 VGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFN 688 (857)
T ss_pred CCHHHHHHHHHHHHHCCHHHEEEECCHHHCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEHHHHHHCHHHHH
T ss_conf 88899999999998389334256253321130127675589987667577881109998198778863257663858999
Q ss_pred HHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCH
Q ss_conf 99998777502177997761254299994242145533036898821114889999987288788177682896288999
Q gi|254780163|r 595 ILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSS 674 (798)
Q Consensus 595 ~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~ 674 (798)
+||||||+|+|||++||+|||+|||||||||+||+.+.+..-........+.++++++++|+|||+||||+||+|+||+.
T Consensus 689 ilLQvlD~G~LtD~~Gr~vdF~NtIIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~~l~~~F~PEFlnRiD~iv~F~pL~~ 768 (857)
T PRK10865 689 ILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGE 768 (857)
T ss_pred HHHHHHCCCEEECCCCCEEEEEEEEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCEEEEECCCCH
T ss_conf 99987036832079998885133489964623369998650655668899999999986479888823784898278999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 99999999999999999986698899988999999971898101532679999986235999999629676888489999
Q gi|254780163|r 675 DIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKVPLADEILFGKLKKGGGVVKVS 754 (798)
Q Consensus 675 ~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~g~~~~~v~ 754 (798)
+++.+|++++|.++.+||.+++|.+++++++++||+++||||+||||||+|+|+++|++|||++||+|++++|++ +.|+
T Consensus 769 ~~l~~Iv~~~l~~l~~rL~~~~i~l~~~~~a~~~l~~~gyd~~~GARpl~r~I~~~i~~~ls~~il~g~~~~g~~-i~v~ 847 (857)
T PRK10865 769 QHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKV-IRLE 847 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE-EEEE
T ss_conf 999999999999999999977984998889999999848897747137899999998899999997288899698-9999
Q ss_pred EECCCC
Q ss_conf 607866
Q gi|254780163|r 755 LNPDKS 760 (798)
Q Consensus 755 ~~~~~~ 760 (798)
+..++.
T Consensus 848 ~~~~~~ 853 (857)
T PRK10865 848 VNEDRI 853 (857)
T ss_pred EECCEE
T ss_conf 779988
No 5
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=0 Score=1859.72 Aligned_cols=725 Identities=42% Similarity=0.701 Sum_probs=676.2
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHH--HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 43899999999999999828995119999999820746--8999998599989999999999641365457788867764
Q gi|254780163|r 4 FSENLEKVLHQALVLANERNHEYATLEHLLLALIDDSD--AAIVMLSCNVDLKVLKNNLLNYIDNDSSNKLKNGFRVECK 81 (798)
Q Consensus 4 fS~~a~~vL~~A~~lAk~~~H~~Vt~EHLLLaLL~d~~--~~~iL~~~giD~~~Lk~~Le~~L~~~~~~~~~~~~~~ei~ 81 (798)
||++++++|+.|+++|++++|.||++||||++|++++. +..+|..+|+|.+.++++++.++++.+.. .+....|.
T Consensus 1 ft~~a~~aL~~A~~~A~~~~h~~V~~eHlLlaLl~~~~~~~~~~L~~~gvd~~~l~~~l~~~l~~~~~~---~~~~~~~~ 77 (852)
T TIGR03346 1 FTEKFQEALQAAQSLALGRDHQQIEPEHLLKALLDQEGGLARRLLQKAGVNVGALRQALEKELEKLPKV---SGPGGQVY 77 (852)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC---CCCCCCCC
T ss_conf 988999999999999998599902799999999739984799999985989999999999999737988---89988828
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
Q ss_conf 69899999999999999809981259998787873774299999998499989999999830000000111211024432
Q gi|254780163|r 82 PTSSFQRVVQRAVLHVQSTGRGIVTGANILVALFSEPDSHATYFLQEQEMTLYDAVNFISHGISKRKEFANFQSKLNVDG 161 (798)
Q Consensus 82 ~S~~l~rVL~~A~~~A~~~G~~~I~~eHLLLALL~e~ds~a~~iL~~~gis~~~v~~~i~~~~~~~~~~~~~~~~~~~~~ 161 (798)
+|+.++++|++|+.+|..+|+++|+++|||+||+.+.++ +..+|..+|++...+...+.......
T Consensus 78 ~s~~~~~vL~~A~~~a~~~~~~~I~~~hlLlall~~~~~-~~~~l~~~gi~~~~l~~~l~~~~~~~-------------- 142 (852)
T TIGR03346 78 LSPELNRLLNLAEKLAQKRGDEFISSEHLLLALLDDKGT-LGKLLKEAGATADALEAAINAVRGGQ-------------- 142 (852)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHCCCCH-HHHHHHHCCCCHHHHHHHHHHHHCCC--------------
T ss_conf 698999999999999998499977399999999709855-99999986999999999999871788--------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
Q ss_conf 10000012444444455554455303565442588775486112221789999999986226778748966764116689
Q gi|254780163|r 162 SSAGSDGEGFVNDYQAKTDLNLFPALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAI 241 (798)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~LdkFg~DLTe~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktai 241 (798)
......+....++|++||+|||++|++|++|||||||+||+|+|||||||+|||||||||||||||||
T Consensus 143 ------------~~~~~~~~~~~~~L~~y~~dLT~~A~~gklDpviGRd~Ei~r~i~IL~Rr~KNNpiLVGepGVGKTAI 210 (852)
T TIGR03346 143 ------------KVTSANAEDQYEALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAI 210 (852)
T ss_pred ------------CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEECCCCCCHHHH
T ss_conf ------------88888875435789999888999998289997738369999999999873248972127999879999
Q ss_pred HHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCC-CCEEEEECCHHHHHCCCCCCCCCCC
Q ss_conf 999999985489883452014455404675306343123789999999872038-9839997361663015544434477
Q gi|254780163|r 242 AEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESY-ANAILYIDEIHTLVGAGSASGISVD 320 (798)
Q Consensus 242 ve~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~-~~~ilfideih~ligag~~~g~~~d 320 (798)
|||||++|++|+||+.|+|++||+||+++|+|||+||||||+|||.|++|++++ +++||||||||||||||+++| ++|
T Consensus 211 vEGLA~rI~~g~VP~~L~~~~i~~LDlg~LvAGtkyRGeFEeRlk~ii~ev~~~~~~iILFIDEiHtliGaG~~~G-~~D 289 (852)
T TIGR03346 211 VEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG-AMD 289 (852)
T ss_pred HHHHHHHHHCCCCCHHHHHCCCEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCCC-CCC
T ss_conf 9999999866999978851851275288775215300789999999999998589987999612555326887666-410
Q ss_pred HHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHH
Q ss_conf 78888766302660388730489999985201114320014430687868999999861276654103512111789999
Q gi|254780163|r 321 ASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAV 400 (798)
Q Consensus 321 ~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av 400 (798)
|||||||+||||+|||||||||+|||||||||+||+||||+|.|+|||.++|+.||+|++++||.||+|+|+|+||++||
T Consensus 290 AaNlLKPaLarGelr~IgATT~~EYrk~iEkD~AL~RRFq~I~V~EPs~e~t~~IL~gl~~~yE~hH~V~i~d~Ai~aav 369 (852)
T TIGR03346 290 AGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAA 369 (852)
T ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHH
T ss_conf 67774378747985599827899999883226889973771204799868999999976999976279267399999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH----------------------------------------------
Q ss_conf 9865420155564679889986533332114432----------------------------------------------
Q gi|254780163|r 401 QLSVRHFTSRKLPDKAIDVIDEAGASQILQPLSK---------------------------------------------- 434 (798)
Q Consensus 401 ~ls~ryi~~r~lPdkAidllDea~a~~~~~~~~~---------------------------------------------- 434 (798)
+||.|||++|+||||||||||||||++++.....
T Consensus 370 ~LS~RYi~~R~LPDKAIDlLDeA~a~~~~~~~~~p~~l~~~~~~~~~l~~e~~~l~~e~d~~~~~~~~~~~~~~~~l~~~ 449 (852)
T TIGR03346 370 TLSHRYITDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEE 449 (852)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97134667788961899999999998876237894679999999999999999998443066799999999999999999
Q ss_pred --------------------------------------------------------------------------HHCCCC
Q ss_conf --------------------------------------------------------------------------211365
Q gi|254780163|r 435 --------------------------------------------------------------------------RRKFIT 440 (798)
Q Consensus 435 --------------------------------------------------------------------------~~~~~~ 440 (798)
-+..|+
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 529 (852)
T TIGR03346 450 YADLEEQWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVT 529 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 99999999999999999999999999999889999875047777775432279999999999987641123442336679
Q ss_pred HHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHH
Q ss_conf 78999866310245310111001123342100002466534589999999998775204456578740688614320038
Q gi|254780163|r 441 EKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGK 520 (798)
Q Consensus 441 ~~~i~~~~~~~~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGK 520 (798)
..||+++|++|+ |||+.+++.+|.++|++|++.|+++||||++||++|+++|+++++||++|+||+|||||+|||||||
T Consensus 530 ~~~ia~vvs~~t-gIPv~~~~~~e~~~L~~Le~~L~~rViGQd~AI~~I~~aI~~sraGL~dp~rP~GsFlf~GptGvGK 608 (852)
T TIGR03346 530 AEEIAEVVSRWT-GIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGK 608 (852)
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCH
T ss_conf 999999999996-8866766654799998788889989717099999999999999718888999745899867887768
Q ss_pred HHHHHHHH---HHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHH
Q ss_conf 89999987---304773377206886124653011047800025644431003555158517774044550289999999
Q gi|254780163|r 521 TEISKQLA---FALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILL 597 (798)
Q Consensus 521 Telak~la---~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~ll 597 (798)
|||||+|| |+++++|||||||||||+||||||||||||||||++||+|||+||++|||||||||||||||+|+|+||
T Consensus 609 TELAKaLAe~Lfg~~~~LIriDMSEy~E~hsvsrLiGaPPGYVGy~egG~Lte~vr~~PysVvL~DEIEKAh~~V~~~lL 688 (852)
T TIGR03346 609 TELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLL 688 (852)
T ss_pred HHHHHHHHHHHHCCCCCEEEECHHHHCCHHHHHHHCCCCCCCCCCCCCCEECHHHHHCCCEEEEECCHHHHCHHHHHHHH
T ss_conf 99999999998558520698430443012247785589997677687874239898198879985305430768999999
Q ss_pred HHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHH
Q ss_conf 98777502177997761254299994242145533036898821114889999987288788177682896288999999
Q gi|254780163|r 598 QIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDII 677 (798)
Q Consensus 598 qild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~ 677 (798)
||||+|+|||+.||+|||+|||||||||+|++.+.+...++..+...+.++++++++|+|||+||||+||+|+||+.+++
T Consensus 689 QilD~G~ltD~~Gr~vdF~NtiiimTSN~Ga~~i~~~~~~~~~~~~~~~~~~~~~~~F~PEflnRid~ii~F~~L~~~~l 768 (852)
T TIGR03346 689 QVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQI 768 (852)
T ss_pred HHHCCCEEECCCCCEEEEEEEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCEEEEECCCCHHHH
T ss_conf 88236743079998885355689861540659997411455579999999999996589989963786898378999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC
Q ss_conf 99999999999999986698899988999999971898101532679999986235999999629676888489999607
Q gi|254780163|r 678 RQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKVPLADEILFGKLKKGGGVVKVSLNP 757 (798)
Q Consensus 678 ~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~g~~~~~v~~~~ 757 (798)
.+|+++++.++.++|++++|.+.+++++++||+++|||+.||||||+|+|++.|++|||++||+|++++|++ ++|++..
T Consensus 769 ~~I~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~g~~~~~GAR~l~r~i~~~i~~~la~~iL~g~~~~g~~-v~v~~~~ 847 (852)
T TIGR03346 769 ARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKILAGEVADGDT-IVVDVEG 847 (852)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE-EEEEEEC
T ss_conf 999999999999999977984998889999999848897747156999999998899999997488899598-9999779
Q ss_pred CCCC
Q ss_conf 8665
Q gi|254780163|r 758 DKSA 761 (798)
Q Consensus 758 ~~~~ 761 (798)
++..
T Consensus 848 ~~~~ 851 (852)
T TIGR03346 848 GRLV 851 (852)
T ss_pred CEEE
T ss_conf 9975
No 6
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=0 Score=1854.19 Aligned_cols=722 Identities=49% Similarity=0.790 Sum_probs=668.6
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 34389999999999999982899511999999982074689999985999899999999996413654577888677646
Q gi|254780163|r 3 FFSENLEKVLHQALVLANERNHEYATLEHLLLALIDDSDAAIVMLSCNVDLKVLKNNLLNYIDNDSSNKLKNGFRVECKP 82 (798)
Q Consensus 3 mfS~~a~~vL~~A~~lAk~~~H~~Vt~EHLLLaLL~d~~~~~iL~~~giD~~~Lk~~Le~~L~~~~~~~~~~~~~~ei~~ 82 (798)
|||++++++|..|+++|+.++|+||++||||++|++++....++..+|++++.++..++.++.+.+.... . +.+
T Consensus 1 ~~~~~~~~~l~~a~~~a~~~~h~~~~~eHll~~ll~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~-----~-~~~ 74 (786)
T COG0542 1 KLTERAQKALELAQELARMRRHEYVTPEHLLLALLDQPKGDELLNLCGIDLDKLRQELEEFIDKLPKVLG-----S-PYL 74 (786)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC-----C-CCC
T ss_conf 9488999999999999998579866599999999748631799987499999999999999842677777-----7-787
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
Q ss_conf 98999999999999998099812599987878737742999999984999899999998300000001112110244321
Q gi|254780163|r 83 TSSFQRVVQRAVLHVQSTGRGIVTGANILVALFSEPDSHATYFLQEQEMTLYDAVNFISHGISKRKEFANFQSKLNVDGS 162 (798)
Q Consensus 83 S~~l~rVL~~A~~~A~~~G~~~I~~eHLLLALL~e~ds~a~~iL~~~gis~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~ 162 (798)
|+.+.++++.|+..++..++++|+++|+|+|++.++++++.++|...+++...+.+.+.......
T Consensus 75 s~~~~~~~~~a~~~a~~~~~~~v~~~~llla~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------------- 139 (786)
T COG0542 75 SPRLKRVLERAWLLAQSLGDEYVSTEHLLLALLNEPESVAAYILKKLGVTRKDVEELIEELRGGN--------------- 139 (786)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCC---------------
T ss_conf 87799999999999875157655589999998617622789999866577777999999973466---------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH
Q ss_conf 00000124444444555544553035654425887754861122217899999999862267787489667641166899
Q gi|254780163|r 163 SAGSDGEGFVNDYQAKTDLNLFPALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIA 242 (798)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~LdkFg~DLTe~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaiv 242 (798)
...........++|++||+|||+.|++||||||||||+||+|+|||||||+||||+|||||||||||||
T Consensus 140 -----------~~~~~~~~~~~~~L~~~~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIv 208 (786)
T COG0542 140 -----------EVDSKNAEEDQDALEKYTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIV 208 (786)
T ss_pred -----------CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHH
T ss_conf -----------667766653244699874114799865898877374799999999983568899847668988899999
Q ss_pred HHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHH
Q ss_conf 99999985489883452014455404675306343123789999999872038983999736166301554443447778
Q gi|254780163|r 243 EGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDAS 322 (798)
Q Consensus 243 e~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~a 322 (798)
||||+||++|+||+.|+|++||+||+++|+||||||||||+|||.|++|+++.+++||||||||||||||+++|++||||
T Consensus 209 EGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~g~a~DAa 288 (786)
T COG0542 209 EGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAA 288 (786)
T ss_pred HHHHHHHHCCCCCHHHCCCEEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCCCCCCHH
T ss_conf 89999974699997875887997148767464653573899999999998517984999823554057776666651256
Q ss_pred HHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHH
Q ss_conf 88876630266038873048999998520111432001443068786899999986127665410351211178999998
Q gi|254780163|r 323 NLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQL 402 (798)
Q Consensus 323 n~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~l 402 (798)
|+|||+||||+|||||||||+|||||||||+||+||||+|.|.|||.++|+.||+|++++||.||+|+|+|+||++||.|
T Consensus 289 NiLKPaLARGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~L 368 (786)
T COG0542 289 NLLKPALARGELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTL 368 (786)
T ss_pred HHHHHHHHCCCEEEEEECCHHHHHHHHHHCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHH
T ss_conf 64677874587379973558999887330667784675102799898999999987788887706964337999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHH---H------------------------HHHC------------------
Q ss_conf 654201555646798899865333321144---3------------------------2211------------------
Q gi|254780163|r 403 SVRHFTSRKLPDKAIDVIDEAGASQILQPL---S------------------------KRRK------------------ 437 (798)
Q Consensus 403 s~ryi~~r~lPdkAidllDea~a~~~~~~~---~------------------------~~~~------------------ 437 (798)
|.|||++|+||||||||+|||||+.+++.. . +.+.
T Consensus 369 S~RYI~dR~LPDKAIDLiDeA~A~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (786)
T COG0542 369 SDRYIPDRFLPDKAIDLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEK 448 (786)
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98645567899467778899999997203488405689999999888898874403688888877899875410056788
Q ss_pred ----CCCHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEE
Q ss_conf ----3657899986631024531011100112334210000246653458999999999877520445657874068861
Q gi|254780163|r 438 ----FITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFS 513 (798)
Q Consensus 438 ----~~~~~~i~~~~~~~~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~ 513 (798)
.|++++|++++++|+ |||+.+++.+|.++|++|++.|++||||||+||++|+++|+|+|+||++|+||+|||||+
T Consensus 449 ~~~~~v~~~~Ia~vv~~~T-gIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~~v~~aIrraRaGL~dp~rPigsFlF~ 527 (786)
T COG0542 449 ELEAEVDEDDIAEVVARWT-GIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFL 527 (786)
T ss_pred HHHHCCCHHHHHHHHHHHH-CCCHHHHCHHHHHHHHHHHHHHHCCEECHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
T ss_conf 8762267989999999987-898364133258899867999736501739999999999999856999999873578866
Q ss_pred CCCCHHHHHHHHHHH---HHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCH
Q ss_conf 432003889999987---30477337720688612465301104780002564443100355515851777404455028
Q gi|254780163|r 514 GPTGVGKTEISKQLA---FALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHP 590 (798)
Q Consensus 514 GptGvGKTelak~la---~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~ 590 (798)
||||||||||||+|| |+++.+|||||||||||+||||||||||||||||+|||+|||+||++|||||||||||||||
T Consensus 528 GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHp 607 (786)
T COG0542 528 GPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHP 607 (786)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHCCCCEEEEECHHHHCCH
T ss_conf 78865699999999999659974445545687777877998727999872006554003766069986888412644088
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCC---CCCCCCHHHHHHHHHHHCCHHHHCCCCEEE
Q ss_conf 99999999877750217799776125429999424214553303689---882111488999998728878817768289
Q gi|254780163|r 591 DVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIG---FGSSRNDDADKEALRNFLSPEFLNRLDSII 667 (798)
Q Consensus 591 ~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g---~~~~~~~~~~~~~l~~~f~peflnRid~ii 667 (798)
||||+||||||+|+|||++||+|||+|||||||||+|++.+.+...+ ...+...+.+++.++++|+|||+||||+||
T Consensus 608 dV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II 687 (786)
T COG0542 608 DVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEII 687 (786)
T ss_pred HHHHHHHHHHCCCCEECCCCCEEECCEEEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCEE
T ss_conf 99999999846780554899888430028998450265989753134321004678899999998538998985126178
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 62889999999999999999999998669889998899999997189810153267999998623599999962967688
Q gi|254780163|r 668 PFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKVPLADEILFGKLKKG 747 (798)
Q Consensus 668 ~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~g 747 (798)
+|+||+.+++.+|++++|.++..+|+++++.+++++++++||+++||||.||||||+|+|+++|++|||++||+|.+.+|
T Consensus 688 ~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL~~~~~~~ 767 (786)
T COG0542 688 PFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEILFGKIEDG 767 (786)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 50679989999999999999999998689559988899999999646877673679999999998999999984665799
Q ss_pred CEEEEEEEECC
Q ss_conf 84899996078
Q gi|254780163|r 748 GGVVKVSLNPD 758 (798)
Q Consensus 748 ~~~~~v~~~~~ 758 (798)
.+ +.|++..+
T Consensus 768 ~~-v~v~~~~~ 777 (786)
T COG0542 768 GT-VKVDVDDE 777 (786)
T ss_pred CE-EEEEECCC
T ss_conf 67-99995176
No 7
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=0 Score=1848.71 Aligned_cols=729 Identities=36% Similarity=0.611 Sum_probs=655.8
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCH--HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 4389999999999999982899511999999982074--68999998599989999999999641365457788867764
Q gi|254780163|r 4 FSENLEKVLHQALVLANERNHEYATLEHLLLALIDDS--DAAIVMLSCNVDLKVLKNNLLNYIDNDSSNKLKNGFRVECK 81 (798)
Q Consensus 4 fS~~a~~vL~~A~~lAk~~~H~~Vt~EHLLLaLL~d~--~~~~iL~~~giD~~~Lk~~Le~~L~~~~~~~~~~~~~~ei~ 81 (798)
+||+++++|+.|+++|++++|+||++||||++|++++ .+..+|..+|+|++.++++++.++++.+ .+....+.
T Consensus 1 Lt~~~~~aL~~A~~~A~~~~H~~I~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~-----~~~~~~~~ 75 (852)
T TIGR03345 1 LNPTSRRALEQAAALCVARGHPEVELEHWLLALLDQPDSDLAAILRHFGVDLGRLKADLARALDKLP-----RGNTRTPV 75 (852)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCC-----CCCCCCCC
T ss_conf 9889999999999999985998138999999998399747999999869999999999999996389-----89999888
Q ss_pred CCHHHHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHCCCCHHHHHHHH---CCCCHHHHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf 69899999999999999-809981259998787873774299999998---49998999999983000000011121102
Q gi|254780163|r 82 PTSSFQRVVQRAVLHVQ-STGRGIVTGANILVALFSEPDSHATYFLQE---QEMTLYDAVNFISHGISKRKEFANFQSKL 157 (798)
Q Consensus 82 ~S~~l~rVL~~A~~~A~-~~G~~~I~~eHLLLALL~e~ds~a~~iL~~---~gis~~~v~~~i~~~~~~~~~~~~~~~~~ 157 (798)
+|+.+.++|++|+..+. .+|+.+|+++|||+|++.+.+..+...... ..++...+...+............
T Consensus 76 ~s~~l~~vl~~A~~~a~~~~g~~~I~~~hlLlall~~~~~~~~~~~~~~~l~~i~~~~l~~~~~~~~~~~~~~~~----- 150 (852)
T TIGR03345 76 FSPHLVELLQEAWLLASLELGDGRIRSGHLLLALLTDPELRRLLGSISPELAKIDREALREALPALVEGSAEASA----- 150 (852)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC-----
T ss_conf 787999999999999999859987739999999825962567899998885358999999999998356743333-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCH
Q ss_conf 44321000001244444445555445530356544258877548611222178999999998622677874896676411
Q gi|254780163|r 158 NVDGSSAGSDGEGFVNDYQAKTDLNLFPALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVG 237 (798)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LdkFg~DLTe~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvG 237 (798)
................+++|++||+|||++|++|++|||||||+||+|+|||||||+|||||||||||||
T Consensus 151 ----------~~~~~~~~~~~~~~~~~~~L~ky~~dLt~~A~~gklDPvIGRd~EI~r~iqIL~Rr~KNNPiLVGepGVG 220 (852)
T TIGR03345 151 ----------AAADAGPAAAAAGAAGTSALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVG 220 (852)
T ss_pred ----------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCC
T ss_conf ----------3334566677777666448999978899999839999886949999999999986247997465799987
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC-EEEEECCHHHHHCCCCCCC
Q ss_conf 668999999998548988345201445540467530634312378999999987203898-3999736166301554443
Q gi|254780163|r 238 KTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYAN-AILYIDEIHTLVGAGSASG 316 (798)
Q Consensus 238 ktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~-~ilfideih~ligag~~~g 316 (798)
|||||||||+||++|+||+.|+|++||+||+++|+|||+||||||+|||.|++|++++++ +||||||||||||||+++|
T Consensus 221 KTAIvEGLA~rI~~g~VP~~L~~~~i~sLDlg~LvAGtkyRGeFEeRlk~ii~ei~~~~~~iILFIDEiHtlvGAG~~~G 300 (852)
T TIGR03345 221 KTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG 300 (852)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHCCEEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCCC
T ss_conf 99999999999976999867743856786788886403576359999999999998489976999634877528998888
Q ss_pred CCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHH
Q ss_conf 44777888876630266038873048999998520111432001443068786899999986127665410351211178
Q gi|254780163|r 317 ISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAI 396 (798)
Q Consensus 317 ~~~d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al 396 (798)
++||||||||+||||+||||||||++|||||||||+||+||||+|.|+|||.++|+.||+|++++||.||+|+|+|+||
T Consensus 301 -~~DaaNiLKPaLarGelr~IGATT~~EYrk~iEkD~AL~RRFq~V~V~EPs~eeti~IL~glk~~yE~hH~V~i~d~Ai 379 (852)
T TIGR03345 301 -QGDAANLLKPALARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAV 379 (852)
T ss_pred -CCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHH
T ss_conf -6227887517873787349983578999888642688996247552799987999999998799985547968708999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH------------------------------------------
Q ss_conf 99999865420155564679889986533332114432------------------------------------------
Q gi|254780163|r 397 RAAVQLSVRHFTSRKLPDKAIDVIDEAGASQILQPLSK------------------------------------------ 434 (798)
Q Consensus 397 ~~av~ls~ryi~~r~lPdkAidllDea~a~~~~~~~~~------------------------------------------ 434 (798)
++||+||.|||++|+||||||||||||||++++.....
T Consensus 380 ~aAv~LS~RYI~dR~LPDKAIDLlDeA~A~~~~~~~~~p~~l~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 459 (852)
T TIGR03345 380 VAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAEL 459 (852)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99999987215545584278999999999999860489568999999999999999998744522733299999999999
Q ss_pred -----------------------------------------------------------------HHCCCCHHHHHHHHH
Q ss_conf -----------------------------------------------------------------211365789998663
Q gi|254780163|r 435 -----------------------------------------------------------------RRKFITEKDIKKTIA 449 (798)
Q Consensus 435 -----------------------------------------------------------------~~~~~~~~~i~~~~~ 449 (798)
-...|+..||+++|+
T Consensus 460 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~V~~~~ia~vvs 539 (852)
T TIGR03345 460 AALEAELAALEARWQQEKELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVA 539 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 99999999999999999999999999999999866514334577888999999999974045664435568999999999
Q ss_pred HCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH-
Q ss_conf 1024531011100112334210000246653458999999999877520445657874068861432003889999987-
Q gi|254780163|r 450 SMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLA- 528 (798)
Q Consensus 450 ~~~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la- 528 (798)
.|+ |||+.++..+|.++|++|+..|+++||||++||++|+++|+++|+||++|+||+|||||+||||||||||||+||
T Consensus 540 ~~t-gIPv~~l~~~e~~~l~~le~~L~~~ViGQ~~Av~~v~~ai~~sraGl~d~~rPigsFLFlGPTGVGKTElAK~LA~ 618 (852)
T TIGR03345 540 DWT-GIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE 618 (852)
T ss_pred HHH-CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 996-8987886178888888679999999728499999999999998717999999856899878998778999999999
Q ss_pred --HHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCC
Q ss_conf --304773377206886124653011047800025644431003555158517774044550289999999987775021
Q gi|254780163|r 529 --FALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILT 606 (798)
Q Consensus 529 --~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~lt 606 (798)
|+++++|||||||||||+||||||||||||||||+|||+|||+||++|||||||||||||||||||+||||||+|+||
T Consensus 619 ~LFg~e~~liR~DMSEy~E~hsvsrLiGaPPGYVGy~eGG~LTe~Vrr~PysVvLfDEIEKAHpdV~nilLQvlD~G~Lt 698 (852)
T TIGR03345 619 LLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVME 698 (852)
T ss_pred HHCCCCCCEEEECCHHHCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECHHHHCCHHHHHHHHHHHCCCEEE
T ss_conf 97198611478422432104368786389997667487772109888099868886113002889999999872467775
Q ss_pred CCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCC----CCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 77997761254299994242145533036898821----11488999998728878817768289628899999999999
Q gi|254780163|r 607 DQSGKKISFRNVILIMTTNAGALEMSKARIGFGSS----RNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVH 682 (798)
Q Consensus 607 d~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~----~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~ 682 (798)
|++||+|||+|||||||||+|++.+.+...++... ...+.++++++++|+|||+||| ++|+|+||+.+++.+|++
T Consensus 699 D~~Gr~vdF~NtIIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFlnRi-~ii~F~~L~~~~l~~Iv~ 777 (852)
T TIGR03345 699 DGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRM-TVIPYLPLDDDVLAAIVR 777 (852)
T ss_pred CCCCCEEECEEEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCE-EEEEECCCCHHHHHHHHH
T ss_conf 7999988452129997572447999864037655566899999999999834798886456-689736899999999999
Q ss_pred HHHHHHHHHHHHC-CCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEE
Q ss_conf 9999999999866-9889998899999997189810153267999998623599999962967688848999960
Q gi|254780163|r 683 KFIMKLELQLQEK-GISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKVPLADEILFGKLKKGGGVVKVSLN 756 (798)
Q Consensus 683 ~~l~~l~~~l~~~-~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~g~~~~~v~~~ 756 (798)
++|.++.+||.++ +|.|.+++++++||+++||||.||||||+|+|+++|++|||++||. ++++|+.+..|+++
T Consensus 778 ~~l~~l~~rL~~~~~i~l~~~~~~~~~l~~~g~~~~~GARpl~r~I~~~i~~~la~~iL~-~~~~g~~~~~i~~~ 851 (852)
T TIGR03345 778 LKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQILE-RLAAGEPIERIHLD 851 (852)
T ss_pred HHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHCCCCEEEEEEC
T ss_conf 999999999986289689988999999998289977686438999999988999999999-87089972488815
No 8
>KOG1051 consensus
Probab=100.00 E-value=0 Score=1297.73 Aligned_cols=721 Identities=36% Similarity=0.576 Sum_probs=646.4
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHH--HHHHHHHCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 43899999999999999828995119999999820746--899999859-998999999999964136545778886776
Q gi|254780163|r 4 FSENLEKVLHQALVLANERNHEYATLEHLLLALIDDSD--AAIVMLSCN-VDLKVLKNNLLNYIDNDSSNKLKNGFRVEC 80 (798)
Q Consensus 4 fS~~a~~vL~~A~~lAk~~~H~~Vt~EHLLLaLL~d~~--~~~iL~~~g-iD~~~Lk~~Le~~L~~~~~~~~~~~~~~ei 80 (798)
||++++.+|.+|+.+|++++|.++||+|++.+||.+++ +..++...+ ++...+..-....+...+....| ....
T Consensus 12 lT~~Aa~~L~~a~~~Arrrgh~qvtplH~~~~LLs~~t~~lr~ac~~~~~l~~ralelc~~v~l~rlpt~~~p---~~sn 88 (898)
T KOG1051 12 LTEEAATVLKQAVTEARRRGHAQVTPLHVASTLLSSPTGILRRACIKSHPLQCRALELCFNVSLNRLPTSYGP---PVSN 88 (898)
T ss_pred HCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC---CCCH
T ss_conf 0799999999999999970888764699999997098317999999647521778998888998734688998---5413
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCC
Q ss_conf 46989999999999999980998125999878787377429999999849998999999983000000011121102443
Q gi|254780163|r 81 KPTSSFQRVVQRAVLHVQSTGRGIVTGANILVALFSEPDSHATYFLQEQEMTLYDAVNFISHGISKRKEFANFQSKLNVD 160 (798)
Q Consensus 81 ~~S~~l~rVL~~A~~~A~~~G~~~I~~eHLLLALL~e~ds~a~~iL~~~gis~~~v~~~i~~~~~~~~~~~~~~~~~~~~ 160 (798)
.++.++++++..+...+..++.++|.++|+.+.++-..+.....++...|++...++..+.+...... .+
T Consensus 89 ~l~aalkr~qa~qrr~~~~~~~~~vkvE~~qli~silDdp~vsrv~rEag~~s~~vK~~ve~~~g~~~----------~~ 158 (898)
T KOG1051 89 ALMAALKRAQAHQRRGCEEQQQQAVKVELEQLILSILDDPSVSRVMREAGFSSSAVKSAVEQPVGQFR----------SP 158 (898)
T ss_pred HHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHEECCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCC----------CC
T ss_conf 76999998899987346242341344766746311305707999999955895899998863024457----------77
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHHHHHHCCCCCCEEEECCCCCHHH
Q ss_conf 2100000124444444555544553035654425887754861122217-899999999862267787489667641166
Q gi|254780163|r 161 GSSAGSDGEGFVNDYQAKTDLNLFPALSAYCVDLTEKVKKGKVDILVGR-HEEINRTIQILCRRSKNNPLYVGDPGVGKT 239 (798)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~LdkFg~DLTe~AreGKLDPVIGR-d~EI~riiqIL~RR~KNn~~lvG~~gvGkt 239 (798)
. ..+....++|.+||.|||.+|++||+|||||| |+||+|+|||||||+||||||||+||||||
T Consensus 159 ~----------------~~~~~~~~~L~~~~~dl~p~~~~gk~dPvigr~deeirRvi~iL~Rr~k~NPvLVG~~gvgkt 222 (898)
T KOG1051 159 S----------------RGPLWPLLFLENYGTDLTPRARQGKLDPVIGRHDEEIRRVIEILSRKTKNNPVLVGEPGVGKT 222 (898)
T ss_pred C----------------CCCCCCHHHHHHCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCH
T ss_conf 7----------------677643467875064567244336878865885288999999981467899669836877721
Q ss_pred HHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHC-CCCCEEEEECCHHHHHCCCCCCCCC
Q ss_conf 899999999854898834520144554046753063431237899999998720-3898399973616630155444344
Q gi|254780163|r 240 AIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIE-SYANAILYIDEIHTLVGAGSASGIS 318 (798)
Q Consensus 240 aive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~-~~~~~ilfideih~ligag~~~g~~ 318 (798)
++++|+|+||+.|+||..|.+++++.||+++|+||++||||||+|++.+++++. ..+.|||||||+|+++|+|++.| +
T Consensus 223 aiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~-~ 301 (898)
T KOG1051 223 AIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG-A 301 (898)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEECCCCCCH-H
T ss_conf 689999987661788853345524898700003586421278899999999985479868998321432204887411-8
Q ss_pred CCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHH
Q ss_conf 77788887663026603887304899999852011143200144306878689999998612766541035121117899
Q gi|254780163|r 319 VDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRA 398 (798)
Q Consensus 319 ~d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~ 398 (798)
+|++|+|||+|+||+++||||||.+||+|||||||||+||||.+.|.+||.++|+.||+|++++||.|||++|+++++..
T Consensus 302 ~d~~nlLkp~L~rg~l~~IGatT~e~Y~k~iekdPalErrw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~ 381 (898)
T KOG1051 302 IDAANLLKPLLARGGLWCIGATTLETYRKCIEKDPALERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFS 381 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCHHHCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99998658888559748972250999999876382054185516713576553145655543420113477125433422
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------------
Q ss_conf 99986542015556467988998653333211443221------------------------------------------
Q gi|254780163|r 399 AVQLSVRHFTSRKLPDKAIDVIDEAGASQILQPLSKRR------------------------------------------ 436 (798)
Q Consensus 399 av~ls~ryi~~r~lPdkAidllDea~a~~~~~~~~~~~------------------------------------------ 436 (798)
|+.+|.||++.||+||+|||+.|||||..+++....+.
T Consensus 382 a~~~s~~~~t~r~lpd~aidl~dEa~a~~~~~~~~lP~wL~~~~~~~~~~~~e~~~L~kk~d~~~h~r~~~~~~~~~~~~ 461 (898)
T KOG1051 382 AAQLSARYITLSFLPDCAIDLEDEAAALVKSQAESLPPWLQNLERVDIKLQDEISELQKKWNQALHKRPSLESLAPSKPT 461 (898)
T ss_pred CCCHHHHHCCCCCCCHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 02101232123768331045889999998631232779887545300006789999998650532234332345654311
Q ss_pred ----------------------C-----CC----------------------------------CHHHHHHHHHHCCCCC
Q ss_conf ----------------------1-----36----------------------------------5789998663102453
Q gi|254780163|r 437 ----------------------K-----FI----------------------------------TEKDIKKTIASMNRSI 455 (798)
Q Consensus 437 ----------------------~-----~~----------------------------------~~~~i~~~~~~~~~gi 455 (798)
. .+ +..+|..+++. |+||
T Consensus 462 ~~~l~~~~~~~~s~~~~l~~~~~~~~~~~~~~k~~r~~d~~~~~~l~~~~~p~~~~~~~~~~~~~~~~i~~~~s~-~tgi 540 (898)
T KOG1051 462 QQPLSASVDSERSVIEELKLKKNSLDRNSLLAKAHRPNDYTRETDLRYGRIPDELSEKSNDNQGGESDISEVVSR-WTGI 540 (898)
T ss_pred CCCCHHHHCCCHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCCCCHHHHHHH-HCCC
T ss_conf 332134433535687664135687001023421468877632120123566505543201134776205554023-2178
Q ss_pred CHHHHHCCHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH---HHCC
Q ss_conf 1011100112334210000246653458999999999877520445657874068861432003889999987---3047
Q gi|254780163|r 456 HTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLA---FALG 532 (798)
Q Consensus 456 p~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la---~~~~ 532 (798)
|+..+...|.++|..|++.|+++|+||++||.+|++||+++|+|+.+| +|.++|||+||||||||+|||+|| |+++
T Consensus 541 p~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fgse 619 (898)
T KOG1051 541 PVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFGSE 619 (898)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCC-CCCEEEEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 214431667899999999997544663778999999998432035788-8885899978884138999999999972886
Q ss_pred CCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 73377206886124653011047800025644431003555158517774044550289999999987775021779977
Q gi|254780163|r 533 VQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKK 612 (798)
Q Consensus 533 ~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~ 612 (798)
.+|||+||||||| ||+|||+|||||||++||+|||+|||+|||||||||||||||+|+|.|||+||+|++||++||+
T Consensus 620 ~~~IriDmse~~e---vskligsp~gyvG~e~gg~LteavrrrP~sVvLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~ 696 (898)
T KOG1051 620 ENFIRLDMSEFQE---VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGRE 696 (898)
T ss_pred CCEEEECHHHHHH---HHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHHCCCCCCCCCCE
T ss_conf 4268961455555---6530489955546305778889971699659998302222888999999998627400588867
Q ss_pred ECCCCEEEEEECCCCHHHHHHCCC--CCCCC---------CCHHHHHHHHH----HHCCHHHHCCCCEEEECCCCCHHHH
Q ss_conf 612542999942421455330368--98821---------11488999998----7288788177682896288999999
Q gi|254780163|r 613 ISFRNVILIMTTNAGALEMSKARI--GFGSS---------RNDDADKEALR----NFLSPEFLNRLDSIIPFFPLSSDII 677 (798)
Q Consensus 613 vdf~n~iii~TsN~G~~~~~~~~~--g~~~~---------~~~~~~~~~l~----~~f~peflnRid~ii~F~~l~~~~~ 677 (798)
|||+|||||||||+|+..+..... ++-.. .....+++.++ .+|+|||+||+|++++|+||+.+++
T Consensus 697 Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~ 776 (898)
T KOG1051 697 VDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDEL 776 (898)
T ss_pred EECCCEEEEEECCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCEEEEECCCCHHHH
T ss_conf 50464599994263166664045410001231000123320133333432013565568678555540554142555666
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC
Q ss_conf 99999999999999986698899988999999971898101532679999986235999999629676888489999607
Q gi|254780163|r 678 RQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKVPLADEILFGKLKKGGGVVKVSLNP 757 (798)
Q Consensus 678 ~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~g~~~~~v~~~~ 757 (798)
.+|+..++.++.+++.++++.+.+++.+.++++.+|||+.|||||++|.|++.+++.++..++ +.+.++. +++|.+..
T Consensus 777 ~~i~~~~~~e~~~r~~~~~~~~~v~~~~~~~v~~~~~d~~ygAr~ikr~i~~~~~~~la~~~l-~ei~~~~-~~~i~~~~ 854 (898)
T KOG1051 777 IEIVNKQLTEIEKRLEERELLLLVTDRVDDKVLFKGYDFDYGARPIKRSIEERFENRLAEALL-GEVEDGL-TERILVAD 854 (898)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHE-EEECCCC-EEEEEECC
T ss_conf 655566778888776666799998899976653057684777668999999998877765311-4326885-69997425
Q ss_pred CCCC
Q ss_conf 8665
Q gi|254780163|r 758 DKSA 761 (798)
Q Consensus 758 ~~~~ 761 (798)
...+
T Consensus 855 ~~~~ 858 (898)
T KOG1051 855 GWSQ 858 (898)
T ss_pred CCCC
T ss_conf 4334
No 9
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=100.00 E-value=0 Score=409.41 Aligned_cols=162 Identities=54% Similarity=0.902 Sum_probs=148.5
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHH---HHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEE
Q ss_conf 874068861432003889999987---30477337720688612465301104780002564443100355515851777
Q gi|254780163|r 505 KPIGCYVFSGPTGVGKTEISKQLA---FALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVL 581 (798)
Q Consensus 505 rP~g~flf~GptGvGKTelak~la---~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl 581 (798)
||+|+|||+||||||||+|||+|| ++.+.+|+++|||||+++|++++|+|+|||||||+++|.||++|+++||||||
T Consensus 1 ~p~~~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~~~v~~l~g~~~gyvg~~~~G~l~~~v~~~p~~Vil 80 (168)
T pfam07724 1 RPIGSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSIVL 80 (168)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCEEE
T ss_conf 98379998898998999999999999679853448855756542569998705899872624265078999838984898
Q ss_pred ECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHC-CCC--CCCCCCHHHHHHHHHHHCCHH
Q ss_conf 40445502899999999877750217799776125429999424214553303-689--882111488999998728878
Q gi|254780163|r 582 LDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKA-RIG--FGSSRNDDADKEALRNFLSPE 658 (798)
Q Consensus 582 ~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~-~~g--~~~~~~~~~~~~~l~~~f~pe 658 (798)
|||||||||+|+++|||+||+|+++|+.||+|||+|||||||||+|++.+.+. ..+ ...........++++++|+||
T Consensus 81 lDEIeKa~~~V~~~LL~ild~g~~~d~~g~~v~~~n~i~i~Tsn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PE 160 (168)
T pfam07724 81 IDEIEKAHPGVQNDLLQILEGGTLTDKQGRKVDFRNTLFIMTGNFGSEKISDASRLGKSPDYELLKELVMDLLKKGFIPE 160 (168)
T ss_pred EHHHHHHCHHHHHHHHHHCCCCCEECCCCCEEECCCEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHH
T ss_conf 65776658999999998705870636999678446479997687372999986304678547999999999998698846
Q ss_pred HHCCCCEE
Q ss_conf 81776828
Q gi|254780163|r 659 FLNRLDSI 666 (798)
Q Consensus 659 flnRid~i 666 (798)
|+||||.|
T Consensus 161 flnRid~i 168 (168)
T pfam07724 161 FLGRLPII 168 (168)
T ss_pred HHCCCCCC
T ss_conf 73575839
No 10
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.97 E-value=7.7e-29 Score=226.41 Aligned_cols=268 Identities=28% Similarity=0.471 Sum_probs=198.4
Q ss_pred HHCCHHHHHHHCHHHHHHHHHHHH----HHHHCCCCCCC---CCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHH
Q ss_conf 100002466534589999999998----77520445657---87406886143200388999998730477337720688
Q gi|254780163|r 470 NLEKNLGTVVYGQEEAIKKLSSSI----KIARAGLSDPN---KPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSE 542 (798)
Q Consensus 470 ~l~~~l~~~v~GQ~~ai~~v~~~i----~~~~~gl~~~~---rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmse 542 (798)
.+.+.|.+.||||++|-..++-|+ +|.+......+ =+-...|++||||+|||+||++||..++.+|+..|.+.
T Consensus 65 eI~~~LD~yVIGQ~~AKk~lsVAvyNHykRi~~~~~~~~~vei~KsNILliGPTG~GKTlla~tLAk~l~vPF~iaDAT~ 144 (411)
T PRK05342 65 EIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRQNGSKSDDVELQKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATT 144 (411)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECE
T ss_conf 99998621402848888999999999999986021335665213453899899997788999999998699989986120
Q ss_pred HHCCCCCCHHCCCCCHHCCCCCCCCCCHH-------HHHCCCEEEEECCHHHCC---------H-----HHHHHHHHHHH
Q ss_conf 61246530110478000256444310035-------551585177740445502---------8-----99999999877
Q gi|254780163|r 543 YMERHAVSRLIGAPPGYVGFGQGGILADS-------VDQNPYSVVLLDEIEKSH---------P-----DVLNILLQIMD 601 (798)
Q Consensus 543 y~e~~~vs~LiGappGYvG~~egg~Lte~-------vr~~P~sVvl~DEiEKAh---------~-----~v~~~llqild 601 (798)
|+|. ||||-|-...|..- |.+.-+.+|.+|||+|-. + .|+..||.+++
T Consensus 145 lTEa-----------GYVGeDVE~ii~~Llq~Ad~dve~Ae~GIV~IDEIDKIarks~~~s~trDVSgEGVQqaLLkiiE 213 (411)
T PRK05342 145 LTEA-----------GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILE 213 (411)
T ss_pred ECCC-----------CCCCCCHHHHHHHHHHHCCCCHHHHHCCEEEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 0126-----------74560799999999998288899883682888502345424788888777651248999999875
Q ss_pred HHHCCC---CCCC--------EECCCCEEEEEECCCCHH---------HHHHCCCCCCCCCCHHHH------------HH
Q ss_conf 750217---7997--------761254299994242145---------533036898821114889------------99
Q gi|254780163|r 602 YGILTD---QSGK--------KISFRNVILIMTTNAGAL---------EMSKARIGFGSSRNDDAD------------KE 649 (798)
Q Consensus 602 ~G~ltd---~~Gr--------~vdf~n~iii~TsN~G~~---------~~~~~~~g~~~~~~~~~~------------~~ 649 (798)
|+... ..|| .||-+|.++|+. ||- .+.+.++||+........ .+
T Consensus 214 -Gt~v~vp~~ggrkhp~~~~~~idT~nILFI~g---GAF~GL~~II~~R~~~~~iGF~~~~~~~~~~~~~~~l~~v~p~D 289 (411)
T PRK05342 214 -GTVASVPPQGGRKHPQQEFIQVDTTNILFICG---GAFDGLEKIIKQRLGKSGIGFGAEVKSKDEKDLGELLAQVEPED 289 (411)
T ss_pred -CCEECCCCCCCCCCCCCCEEEEECCCEEEEEC---CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHH
T ss_conf -87141188877778776516761471799911---55335899998635788767788766411000567876279878
Q ss_pred HHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHH----HHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 998728878817768289628899999999999----9999999999866988999889999999718981015326799
Q gi|254780163|r 650 ALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVH----KFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLER 725 (798)
Q Consensus 650 ~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~----~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r 725 (798)
-++--|=|||++|+.-++.+++|+.+++.+|+. -.+++..+.++..|+.|+|+++|++.+|++......|||.|+.
T Consensus 290 Li~fGlIPEfiGRlPViv~L~~L~~~~L~~ILtePkNaLikQY~~LF~~dgV~L~Ft~~AL~~IA~~A~~~~tGARgLRs 369 (411)
T PRK05342 290 LVKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDDALEAIAKKAIERKTGARGLRS 369 (411)
T ss_pred HHHCCCCHHHHCCCCEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 88738837761466405462447999999996587415999999999754967998689999999999984757457799
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECC
Q ss_conf 999862359999996296768884899996078
Q gi|254780163|r 726 IIKEHVKVPLADEILFGKLKKGGGVVKVSLNPD 758 (798)
Q Consensus 726 ~i~~~i~~~la~~il~~~~~~g~~~~~v~~~~~ 758 (798)
++++.+.+ ++| ++++-..+.+|.++.+
T Consensus 370 IlE~iLld-----~MF-elPs~~~v~~v~It~~ 396 (411)
T PRK05342 370 ILEEVLLD-----VMF-ELPSREDVEKVVITEE 396 (411)
T ss_pred HHHHHHHH-----HHC-CCCCCCCCCEEEECHH
T ss_conf 99999788-----754-4889899709998879
No 11
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=99.96 E-value=7.2e-29 Score=226.60 Aligned_cols=278 Identities=29% Similarity=0.422 Sum_probs=214.9
Q ss_pred CCCCHHHHHCCHHHHHHHHCCHHHHHHHCHHHHHHHHHHH----HHHHHC--CCC--CCC-C------------CCCEEE
Q ss_conf 4531011100112334210000246653458999999999----877520--445--657-8------------740688
Q gi|254780163|r 453 RSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSS----IKIARA--GLS--DPN-K------------PIGCYV 511 (798)
Q Consensus 453 ~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~v~~~----i~~~~~--gl~--~~~-r------------P~g~fl 511 (798)
..+|.-+ .+.+.|..+|||||+|-+.++-| ++|.+. -.. |+. . --...|
T Consensus 87 ~~lP~P~----------eik~~LD~YVIGQe~AKKVLsVAVYNHYKRl~~~~~n~~~d~~D~nvelehleeVEL~KSNIL 156 (452)
T TIGR00382 87 SELPTPK----------EIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNLKEKNKKSDNGDSNVELEHLEEVELSKSNIL 156 (452)
T ss_pred HCCCCCH----------HHHHHHCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 2478827----------999972136123101052543241124666532430455588400023544444333006624
Q ss_pred EECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCC-------EEEEECC
Q ss_conf 614320038899999873047733772068861246530110478000256444310035551585-------1777404
Q gi|254780163|r 512 FSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPY-------SVVLLDE 584 (798)
Q Consensus 512 f~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~-------sVvl~DE 584 (798)
++||||+|||-||++||..++.+|---|-...+|+ ||||=|=--.|++-+...-| .+|..||
T Consensus 157 LiGPTGSGKTLLAqTLA~~L~VPfAiADATtLTEA-----------GYVGEDVENIL~~Llq~ad~DV~kA~kGIiYIDE 225 (452)
T TIGR00382 157 LIGPTGSGKTLLAQTLARILNVPFAIADATTLTEA-----------GYVGEDVENILLKLLQAADYDVEKAQKGIIYIDE 225 (452)
T ss_pred EECCCCCCHHHHHHHHHHHCCCCEEECCHHHHHCC-----------CCCCCCHHHHHHHHHHHCCCCHHHHCCCEEEEEC
T ss_conf 54688852689999999873887421111102006-----------6424228899999987414552452785089842
Q ss_pred HHHCCH--------------HHHHHHHHHHHHHHCCC---CCCCEECCCCEEEEEECCC-----CH----HH-----HHH
Q ss_conf 455028--------------99999999877750217---7997761254299994242-----14----55-----330
Q gi|254780163|r 585 IEKSHP--------------DVLNILLQIMDYGILTD---QSGKKISFRNVILIMTTNA-----GA----LE-----MSK 633 (798)
Q Consensus 585 iEKAh~--------------~v~~~llqild~G~ltd---~~Gr~vdf~n~iii~TsN~-----G~----~~-----~~~ 633 (798)
|+|-.+ -|++.||.+++ |++.. --||+----++|=|=|||+ || +. +.+
T Consensus 226 IDKIaRkSEN~SITRDVSGEGVQQALLKi~E-GTvA~vPPqGGRKHP~~~~iqiDTs~ILFICGGAF~GL~~iI~~R~~~ 304 (452)
T TIGR00382 226 IDKIARKSENPSITRDVSGEGVQQALLKIIE-GTVANVPPQGGRKHPQQEFIQIDTSNILFICGGAFVGLEKIIKKRTEK 304 (452)
T ss_pred CCCHHHHCCCCEEEEEECCCHHHHHHHHHHH-CCEEEECCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHHHHHHHHCC
T ss_conf 2310121577801122175549999998760-323431754488688657688647640011054344489999887455
Q ss_pred CC-CCCCCCCCHHHHHH----HHHH---------HCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH----HC
Q ss_conf 36-89882111488999----9987---------2887881776828962889999999999999999999998----66
Q gi|254780163|r 634 AR-IGFGSSRNDDADKE----ALRN---------FLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQ----EK 695 (798)
Q Consensus 634 ~~-~g~~~~~~~~~~~~----~l~~---------~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~----~~ 695 (798)
++ +||+.........+ .|++ -+=|||++||..+-..++|+.++|.+|+..-=+.|.++++ --
T Consensus 305 ~~~iGF~~~~~~~~~~~~~~~~L~~v~~~DL~kFGLIPEfIGRLPV~a~L~~L~~eAL~~IL~~PkNAlvKQY~~lf~ld 384 (452)
T TIGR00382 305 KSSIGFGAEVKKKSKEKSEEELLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKLD 384 (452)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf 53335455210045787899999751711122105551011053402027878878999985254444889999971645
Q ss_pred CCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECC
Q ss_conf 988999889999999718981015326799999862359999996296768884899996078
Q gi|254780163|r 696 GISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKVPLADEILFGKLKKGGGVVKVSLNPD 758 (798)
Q Consensus 696 ~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~g~~~~~v~~~~~ 758 (798)
+|.|.|.++|++.+|++...++.|||.||-+|+..+.+ ++| +|++=..+-+|.++.+
T Consensus 385 ~VeL~F~~eAl~~IA~~A~~RkTGARGLRsI~E~~lLD-----vMf-eLPs~~~~~kv~it~~ 441 (452)
T TIGR00382 385 NVELEFEEEALKAIAKKALERKTGARGLRSIVEGLLLD-----VMF-ELPSLEDLEKVVITKE 441 (452)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----HCC-CCCCHHCCCEEEEEHH
T ss_conf 61134558889999999985076751578999999875-----314-7886115756787077
No 12
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.1e-25 Score=201.66 Aligned_cols=271 Identities=30% Similarity=0.438 Sum_probs=198.6
Q ss_pred HHCCHHHHHHHCHHHHHHHHHHH----HHHHHCCCCCCCCC--CCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHH
Q ss_conf 10000246653458999999999----87752044565787--4068861432003889999987304773377206886
Q gi|254780163|r 470 NLEKNLGTVVYGQEEAIKKLSSS----IKIARAGLSDPNKP--IGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEY 543 (798)
Q Consensus 470 ~l~~~l~~~v~GQ~~ai~~v~~~----i~~~~~gl~~~~rP--~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey 543 (798)
.+...|.++||||+.|-..++-| .+|.+..-.+.+-- -...|++||||+|||.||++||..+..+|.--|....
T Consensus 54 eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtL 133 (408)
T COG1219 54 EIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTL 133 (408)
T ss_pred HHHHHHHHHEECCHHHHCEEEEEEEHHHHHHHCCCCCCCEEEEECCEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCH
T ss_conf 99998652432625431034664106889986048877635320317998889975779999999984898475144412
Q ss_pred HCCCCCCHHCCCCCHHCCCCCCCCCCHH-------HHHCCCEEEEECCHHHCC-----H---------HHHHHHHHHHHH
Q ss_conf 1246530110478000256444310035-------551585177740445502-----8---------999999998777
Q gi|254780163|r 544 MERHAVSRLIGAPPGYVGFGQGGILADS-------VDQNPYSVVLLDEIEKSH-----P---------DVLNILLQIMDY 602 (798)
Q Consensus 544 ~e~~~vs~LiGappGYvG~~egg~Lte~-------vr~~P~sVvl~DEiEKAh-----~---------~v~~~llqild~ 602 (798)
+| +||||-|-...|..- |.+.-..+|..|||+|-. | .|+..||.|++
T Consensus 134 TE-----------AGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSen~SITRDVSGEGVQQALLKiiE- 201 (408)
T COG1219 134 TE-----------AGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIE- 201 (408)
T ss_pred HH-----------CCCCCHHHHHHHHHHHHHCCCCHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHC-
T ss_conf 10-----------663550089999999987645888882885998510254205789872343673589999999970-
Q ss_pred HHCC---CCCCCEECCCCEEEEEECCC-----CH----HH-----HHHCCCCCCCCCCHHHH----H---------HHHH
Q ss_conf 5021---77997761254299994242-----14----55-----33036898821114889----9---------9998
Q gi|254780163|r 603 GILT---DQSGKKISFRNVILIMTTNA-----GA----LE-----MSKARIGFGSSRNDDAD----K---------EALR 652 (798)
Q Consensus 603 G~lt---d~~Gr~vdf~n~iii~TsN~-----G~----~~-----~~~~~~g~~~~~~~~~~----~---------~~l~ 652 (798)
|+.. -.-||+-.--..|-|-|||+ || +. +...++||+.+..+... . +-++
T Consensus 202 GTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvk 281 (408)
T COG1219 202 GTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVK 281 (408)
T ss_pred CCEECCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHH
T ss_conf 75102399988879842048873763467824401039999998626874245664453444412889987548687887
Q ss_pred HHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHH----HHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 7288788177682896288999999999999999999----999866988999889999999718981015326799999
Q gi|254780163|r 653 NFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLE----LQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIK 728 (798)
Q Consensus 653 ~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~----~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~ 728 (798)
--.=|||++|+..|....+|+.+++.+|+..--+.|. +.+...++.|+|+++|+..++++...++.|||.||.+++
T Consensus 282 FGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E 361 (408)
T COG1219 282 FGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIE 361 (408)
T ss_pred CCCCHHHHCCCCEEEEHHHCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 08838872666326461015999999997265178999999996446916997489999999999984335357999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEEEECC
Q ss_conf 862359999996296768884899996078
Q gi|254780163|r 729 EHVKVPLADEILFGKLKKGGGVVKVSLNPD 758 (798)
Q Consensus 729 ~~i~~~la~~il~~~~~~g~~~~~v~~~~~ 758 (798)
..+.+ +++ ++++-..+.+|.++.+
T Consensus 362 ~~lld-----~Mf-elPs~~~v~~v~I~~~ 385 (408)
T COG1219 362 ELLLD-----VMF-ELPSLEDVEKVVITEE 385 (408)
T ss_pred HHHHH-----HHH-HCCCCCCCEEEEEEHH
T ss_conf 99999-----885-2788678508997688
No 13
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=99.93 E-value=4.1e-24 Score=192.43 Aligned_cols=240 Identities=23% Similarity=0.445 Sum_probs=167.3
Q ss_pred HHCCHHHHHHHCHHHHHHHHHHHHH----HHH--CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHH
Q ss_conf 1000024665345899999999987----752--0445657874068861432003889999987304773377206886
Q gi|254780163|r 470 NLEKNLGTVVYGQEEAIKKLSSSIK----IAR--AGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEY 543 (798)
Q Consensus 470 ~l~~~l~~~v~GQ~~ai~~v~~~i~----~~~--~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey 543 (798)
.+.+.|.+.||||++|-.+|+-|++ |.+ ..+++.--|- ..|++|||||||||+|+.||...+.+|+..|.+-|
T Consensus 8 eIv~~LD~yIIGQ~~AKkavAVAlrNr~RR~~l~~~lr~Ei~pk-NILmIGPTGvGKTeIARrLAkl~~aPFvkveATk~ 86 (442)
T PRK05201 8 EIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPK-NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (442)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 99998536010827766787778877787531662212334643-16887888866789999999984898587521310
Q ss_pred HCCCCC----------------------------------------CHHCCCCCHHCCCCCC-----------------C
Q ss_conf 124653----------------------------------------0110478000256444-----------------3
Q gi|254780163|r 544 MERHAV----------------------------------------SRLIGAPPGYVGFGQG-----------------G 566 (798)
Q Consensus 544 ~e~~~v----------------------------------------s~LiGappGYvG~~eg-----------------g 566 (798)
+|..-| ..|+|++++..+-+.+ |
T Consensus 87 TEvGYvGrDVEsiIrdLv~~a~~~~k~~~~~~v~~~A~~~a~~ril~~L~~~~~~~~~~~~~~~~~~~tre~~r~~Lr~G 166 (442)
T PRK05201 87 TEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEEEESSATRQKFRKKLREG 166 (442)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 00343564378899999999999999999999999999999999999855865555555454202367899999998658
Q ss_pred -----------------------------------------------------------------------CCCHHHHHC
Q ss_conf -----------------------------------------------------------------------100355515
Q gi|254780163|r 567 -----------------------------------------------------------------------ILADSVDQN 575 (798)
Q Consensus 567 -----------------------------------------------------------------------~Lte~vr~~ 575 (798)
..-+|+++-
T Consensus 167 ~Ldd~~IeIev~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~kkr~~tVkeA~~iL~~eEa~klid~d~v~~eAi~~a 246 (442)
T PRK05201 167 ELDDKEIEIEVADAPGVEIMGPPGMEEMGNQLQDMFGNLGPKKKKKRKLKVKEARKLLIEEEAAKLVDQEEIKQEAIERV 246 (442)
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 86655578861577777777887515566679987640278887404646999999999999986248899999999988
Q ss_pred -CCEEEEECCHHHCC------------HHHHHHHHHHHHHHHCC-CCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCC
Q ss_conf -85177740445502------------89999999987775021-77997761254299994242145533036898821
Q gi|254780163|r 576 -PYSVVLLDEIEKSH------------PDVLNILLQIMDYGILT-DQSGKKISFRNVILIMTTNAGALEMSKARIGFGSS 641 (798)
Q Consensus 576 -P~sVvl~DEiEKAh------------~~v~~~llqild~G~lt-d~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~ 641 (798)
-+.+|++|||+|-- -.|+.-||.+++ |+-- --.| .|+..|.++|+ .||-..+++
T Consensus 247 Eq~GIVFIDEIDKIa~~~~~~g~DVS~EGVQrdLLpivE-Gt~V~tK~G-~V~TdhILFIa---sGAFh~sKP------- 314 (442)
T PRK05201 247 EQNGIVFIDEIDKIAKRGEGSGPDVSREGVQRDLLPLVE-GSTVSTKYG-MVKTDHILFIA---SGAFHVAKP------- 314 (442)
T ss_pred HHCCCEEECHHHHHHCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCC-CCCCCEEEEEC---CCCCCCCCC-------
T ss_conf 761704511465653035788989773307888788753-885556777-60255034550---450014782-------
Q ss_pred CCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHH----HHHHHHHHHHHCCCEEEECHHHHHHHHHCCCC--
Q ss_conf 114889999987288788177682896288999999999999----99999999986698899988999999971898--
Q gi|254780163|r 642 RNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHK----FIMKLELQLQEKGISFHFSEEVINWLVSHGYD-- 715 (798)
Q Consensus 642 ~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~----~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~-- 715 (798)
++ +=|||.+|+.-++.+++|+.+++.+|+.- .+++....+.-.|+.|+|++++++.+|+..+.
T Consensus 315 --SD---------LIPEl~GRlPv~v~L~~L~~~dl~~ILtepknsL~kQy~~Lf~~egv~L~Ft~~Al~~IA~~A~~~n 383 (442)
T PRK05201 315 --SD---------LIPELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVN 383 (442)
T ss_pred --CH---------HHHHHCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHC
T ss_conf --02---------2498717550588824499999999967861578999999986249679984799999999999851
Q ss_pred ---CCCCCHHHHHHHHHHHHH
Q ss_conf ---101532679999986235
Q gi|254780163|r 716 ---VKMGARPLERIIKEHVKV 733 (798)
Q Consensus 716 ---~~~GAR~l~r~i~~~i~~ 733 (798)
...|||.|+-++++.+++
T Consensus 384 ~~~~~iGAR~L~tI~E~vl~d 404 (442)
T PRK05201 384 EKTENIGARRLHTVMEKLLED 404 (442)
T ss_pred CCCCCCCHHHHHHHHHHHHHH
T ss_conf 447667737889999999898
No 14
>KOG0730 consensus
Probab=99.91 E-value=1.3e-21 Score=174.46 Aligned_cols=401 Identities=26% Similarity=0.409 Sum_probs=252.6
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-CEEEEECCH
Q ss_conf 7489667641166899999999854898834520144554046753063431237899999998720389-839997361
Q gi|254780163|r 227 NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYA-NAILYIDEI 305 (798)
Q Consensus 227 n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~-~~ilfidei 305 (798)
++++.|+||+|||-+++.+|+.- +..++.++...++. +|-||-|..++..+.++.+.. +.|+|||||
T Consensus 220 g~Ll~gppg~Gkt~l~~aVa~e~----------~a~~~~i~~peli~--k~~gEte~~LR~~f~~a~k~~~psii~IdEl 287 (693)
T KOG0730 220 GLLLYGPPGTGKTFLVRAVANEY----------GAFLFLINGPELIS--KFPGETESNLRKAFAEALKFQVPSIIFIDEL 287 (693)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH----------CCEEEECCCHHHHH--HCCCCHHHHHHHHHHHHHCCCCCEEEEHHHH
T ss_conf 74443899998189999999973----------72257406289998--5246317789999999866599807758767
Q ss_pred HHHHCCCCCCCCCCC-----HHH---HHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHH-HCEE-EEECCCCHHHHHHH
Q ss_conf 663015544434477-----788---8876630266038873048999998520111432-0014-43068786899999
Q gi|254780163|r 306 HTLVGAGSASGISVD-----ASN---LLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVR-RFQK-IDVSEPSIEDAIEI 375 (798)
Q Consensus 306 h~ligag~~~g~~~d-----~an---~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~r-rF~~-i~v~ep~~~~~~~i 375 (798)
+.|.+- ..+ .-+ .+. +++-..+++.+-||++|--. -.-|+||.| ||.. |.|.-|+......|
T Consensus 288 d~l~p~--r~~-~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp-----~sld~alRRgRfd~ev~IgiP~~~~RldI 359 (693)
T KOG0730 288 DALCPK--REG-ADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRP-----DSLDPALRRGRFDREVEIGIPGSDGRLDI 359 (693)
T ss_pred HHHCCC--CCC-CCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC-----CCCCHHHHCCCCCCEEEECCCCCHHHHHH
T ss_conf 623776--433-3248889999999998527676746999715885-----55685652478853157448983358899
Q ss_pred HHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
Q ss_conf 98612766541035121117899999865420155564679889986533332114432211365789998663102453
Q gi|254780163|r 376 VKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIASMNRSI 455 (798)
Q Consensus 376 L~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi 455 (798)
|+-+-..++- . ++.-+..+....+-|.-. ..-.++-+| .++.... +.+++..... +|
T Consensus 360 l~~l~k~~~~----~-~~~~l~~iA~~thGyvGa-----DL~~l~~ea----~~~~~r~-----~~~~~~~A~~----~i 416 (693)
T KOG0730 360 LRVLTKKMNL----L-SDVDLEDIAVSTHGYVGA-----DLAALCREA----SLQATRR-----TLEIFQEALM----GI 416 (693)
T ss_pred HHHHHHHCCC----C-CHHHHHHHHHHCCCHHHH-----HHHHHHHHH----HHHHHHH-----HHHHHHHHHH----CC
T ss_conf 9999861688----7-255689999873461478-----799999998----7776655-----5777899870----68
Q ss_pred CHHHHHCCHHHHHHHHCCHHHHHHH-CHHHHHHHHHHHH--------HHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 1011100112334210000246653-4589999999998--------775204456578740688614320038899999
Q gi|254780163|r 456 HTTSFSRDDDSVLSNLEKNLGTVVY-GQEEAIKKLSSSI--------KIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQ 526 (798)
Q Consensus 456 p~~~~~~~~~~~l~~l~~~l~~~v~-GQ~~ai~~v~~~i--------~~~~~gl~~~~rP~g~flf~GptGvGKTelak~ 526 (798)
-...+ ++.+..+. +..-.-| |+++--..+-++| .-.+.|+..| -|+ ||-||+|+|||-+||+
T Consensus 417 ~psa~----Re~~ve~p-~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~pp---kGV-LlyGPPGC~KT~lAka 487 (693)
T KOG0730 417 RPSAL----REILVEMP-NVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPP---KGV-LLYGPPGCGKTLLAKA 487 (693)
T ss_pred CCHHH----HHEECCCC-CCCHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCC---CEE-EEECCCCCCHHHHHHH
T ss_conf 70223----32002478-878220457899999999998616656599987257887---547-7778998624789999
Q ss_pred HHHHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCC--CCCCHHHHHCCCEEEEECCHHH-----------CCHHHH
Q ss_conf 873047733772068861246530110478000256444--3100355515851777404455-----------028999
Q gi|254780163|r 527 LAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQG--GILADSVDQNPYSVVLLDEIEK-----------SHPDVL 593 (798)
Q Consensus 527 la~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~eg--g~Lte~vr~~P~sVvl~DEiEK-----------Ah~~v~ 593 (798)
+|.....+|+.+-..|.+.+ |||-.|- ..+..+-|+.+-||++||||+- +.-.|+
T Consensus 488 lAne~~~nFlsvkgpEL~sk------------~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVl 555 (693)
T KOG0730 488 LANEAGMNFLSVKGPELFSK------------YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVL 555 (693)
T ss_pred HHHHHCCCEEECCCHHHHHH------------HCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 86463587264157899877------------518258999999999862698377446666666304787551489999
Q ss_pred HHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCC
Q ss_conf 99999877750217799776125429999424214553303689882111488999998728878817768289628899
Q gi|254780163|r 594 NILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLS 673 (798)
Q Consensus 594 ~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~ 673 (798)
+-||.-|| |.... +|.+||--+|-- +.... ...+| +|+|.+|.+-+-+
T Consensus 556 sqLLtEmD-G~e~~--------k~V~ViAATNRp-----------------d~ID~---ALlRP---GRlD~iiyVplPD 603 (693)
T KOG0730 556 SQLLTEMD-GLEAL--------KNVLVIAATNRP-----------------DMIDP---ALLRP---GRLDRIIYVPLPD 603 (693)
T ss_pred HHHHHHCC-CCCCC--------CCEEEEECCCCH-----------------HHCCH---HHCCC---CCCCEEEEECCCC
T ss_conf 99998700-41014--------708999505881-----------------01269---77598---6533057515834
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECHH-HHHHHHH--CCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999866988999889-9999997--189810153267999998623599999
Q gi|254780163|r 674 SDIIRQVVHKFIMKLELQLQEKGISFHFSEE-VINWLVS--HGYDVKMGARPLERIIKEHVKVPLADE 738 (798)
Q Consensus 674 ~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~-~~~~l~~--~~~~~~~GAR~l~r~i~~~i~~~la~~ 738 (798)
.+.-..|+...+++. . +.+. -++.|++ .||+ | +.|..+++.--...+.+-
T Consensus 604 ~~aR~~Ilk~~~kkm---------p--~~~~vdl~~La~~T~g~S---G-Ael~~lCq~A~~~a~~e~ 656 (693)
T KOG0730 604 LEARLEILKQCAKKM---------P--FSEDVDLEELAQATEGYS---G-AEIVAVCQEAALLALRES 656 (693)
T ss_pred HHHHHHHHHHHHHCC---------C--CCCCCCHHHHHHHHCCCC---H-HHHHHHHHHHHHHHHHHH
T ss_conf 788999999997339---------9--986556999999854677---3-899999999999999875
No 15
>KOG0733 consensus
Probab=99.90 E-value=1.4e-20 Score=166.96 Aligned_cols=452 Identities=22% Similarity=0.327 Sum_probs=251.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHCC-C-----------CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHH
Q ss_conf 6112221789999999986226-7-----------787489667641166899999999854898834520144554046
Q gi|254780163|r 202 KVDILVGRHEEINRTIQILCRR-S-----------KNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMG 269 (798)
Q Consensus 202 KLDPVIGRd~EI~riiqIL~RR-~-----------KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~ 269 (798)
++.-+=|-|+++..+.+++.-- + -..++|-|+||.|||.++..+|.. .+.-++++...
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge----------l~vPf~~isAp 257 (802)
T KOG0733 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE----------LGVPFLSISAP 257 (802)
T ss_pred CHHHCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHH----------CCCCEEEECCH
T ss_conf 36541673899999999998852811686628779975164489986478999997521----------28854851414
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCC---HHHHHHHH--HC-----CCCEEEEEE
Q ss_conf 753063431237899999998720389839997361663015544434477---78888766--30-----266038873
Q gi|254780163|r 270 NLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVD---ASNLLKPA--LS-----SGAVRCIGS 339 (798)
Q Consensus 270 ~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d---~an~lkP~--L~-----rg~~~~Iga 339 (798)
.+|+|.+ ||-|++++.++++++...+.|+|||||..|-+.-...+--|. +|.+|--+ |. .-.+-+|||
T Consensus 258 eivSGvS--GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgA 335 (802)
T KOG0733 258 EIVSGVS--GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGA 335 (802)
T ss_pred HHHCCCC--CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC
T ss_conf 6531557--52289999999987366975998511001364404578899999999999851002566668997699824
Q ss_pred CC-HHHHHHHHHCCHHHHH--HCEE-EEECCCCHHHHHHHHHHHHHHH--------H----HHCCCEECCHHHHHHHHHH
Q ss_conf 04-8999998520111432--0014-4306878689999998612766--------5----4103512111789999986
Q gi|254780163|r 340 TT-YSEYRQFFEKDKALVR--RFQK-IDVSEPSIEDAIEIVKGIKPYF--------E----EHHQLRYSKEAIRAAVQLS 403 (798)
Q Consensus 340 tT-~~ey~~~~e~d~al~r--rF~~-i~v~ep~~~~~~~iL~~~~~~y--------e----~~h~v~~~~~al~~av~ls 403 (798)
|+ |+ .-|+||.| ||.. |-+.-|+...--+||+-+...+ + ..||.. -.-|.+.+..+
T Consensus 336 TnRPD------slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfV--GADL~AL~~~A 407 (802)
T KOG0733 336 TNRPD------SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFV--GADLMALCREA 407 (802)
T ss_pred CCCCC------CCCHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCC--CHHHHHHHHHH
T ss_conf 78976------55877732565532353068966889999999986277787768999975188752--14199999999
Q ss_pred -----HHHCCCCCCHHHHHHHHHH-----H---HHHHHHHHHHH-------------------------HHCCCCHHHHH
Q ss_conf -----5420155564679889986-----5---33332114432-------------------------21136578999
Q gi|254780163|r 404 -----VRHFTSRKLPDKAIDVIDE-----A---GASQILQPLSK-------------------------RRKFITEKDIK 445 (798)
Q Consensus 404 -----~ryi~~r~lPdkAidllDe-----a---~a~~~~~~~~~-------------------------~~~~~~~~~i~ 445 (798)
+|.+..+.-|-...+.-.. + -+..++..... ..-.|.-.|..
T Consensus 408 a~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~ 487 (802)
T KOG0733 408 AFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFE 487 (802)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHCCCEECHHHHH
T ss_conf 99999998621357665687545666777530135540577644654478999999971899868677356610199999
Q ss_pred HHHHHCC-----CCC-CHHHHHCCHHHHHHHHCCHHHHHHHCHHHHHHHHHHHH--------HHHHCCCCCCCCCCCEEE
Q ss_conf 8663102-----453-10111001123342100002466534589999999998--------775204456578740688
Q gi|254780163|r 446 KTIASMN-----RSI-HTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSI--------KIARAGLSDPNKPIGCYV 511 (798)
Q Consensus 446 ~~~~~~~-----~gi-p~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~v~~~i--------~~~~~gl~~~~rP~g~fl 511 (798)
..+..+. .|+ -+-.++-++ |=|+++.-..+-.+| .-.+.|+.. |-| +|
T Consensus 488 ~Al~~iQPSakREGF~tVPdVtW~d--------------IGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~---PsG-vL 549 (802)
T KOG0733 488 EALSKIQPSAKREGFATVPDVTWDD--------------IGALEEVRLELNMAILAPIKRPDLFKALGIDA---PSG-VL 549 (802)
T ss_pred HHHHHCCCCHHCCCCEECCCCCHHH--------------CCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCC---CCC-EE
T ss_conf 9998559302036513269987664--------------12499999999999860023888999828889---872-38
Q ss_pred EECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCC--CCCHHHHHCCCEEEEECCHHHCC
Q ss_conf 6143200388999998730477337720688612465301104780002564443--10035551585177740445502
Q gi|254780163|r 512 FSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGG--ILADSVDQNPYSVVLLDEIEKSH 589 (798)
Q Consensus 512 f~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg--~Lte~vr~~P~sVvl~DEiEKAh 589 (798)
++||+|+|||.|||+.|-..+-+||.+--.|...+ |||-.|-- ++...-|..--|||+||||+---
T Consensus 550 L~GPPGCGKTLlAKAVANEag~NFisVKGPELlNk------------YVGESErAVR~vFqRAR~saPCVIFFDEiDaL~ 617 (802)
T KOG0733 550 LCGPPGCGKTLLAKAVANEAGANFISVKGPELLNK------------YVGESERAVRQVFQRARASAPCVIFFDEIDALV 617 (802)
T ss_pred EECCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHH------------HHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCC
T ss_conf 75799861889999985030475476238899987------------742378999999998623898389851112027
Q ss_pred -----------HHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHH
Q ss_conf -----------899999999877750217799776125429999424214553303689882111488999998728878
Q gi|254780163|r 590 -----------PDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPE 658 (798)
Q Consensus 590 -----------~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~pe 658 (798)
..|.|-||-=|| | |.+ =++..||-.+|- . +.+.+ ..+||
T Consensus 618 p~R~~~~s~~s~RvvNqLLtElD-G-l~~-------R~gV~viaATNR-------P----------DiIDp---AiLRP- 667 (802)
T KOG0733 618 PRRSDEGSSVSSRVVNQLLTELD-G-LEE-------RRGVYVIAATNR-------P----------DIIDP---AILRP- 667 (802)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC-C-CCC-------CCCEEEEEECCC-------C----------CCCCH---HHCCC-
T ss_conf 65577775058999999998731-6-211-------142599950689-------7----------65556---55187-
Q ss_pred HHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 81776828962889999999999999999999998669889998899999997189810153267999998623599999
Q gi|254780163|r 659 FLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKVPLADE 738 (798)
Q Consensus 659 flnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~ 738 (798)
+|+|.+..-..-..++-..|+....+. .+..|.-+- -++-|+..---..|-.-.|.-.+++--...|-..
T Consensus 668 --GRlDk~LyV~lPn~~eR~~ILK~~tkn-------~k~pl~~dV-dl~eia~~~~c~gftGADLaaLvreAsi~AL~~~ 737 (802)
T KOG0733 668 --GRLDKLLYVGLPNAEERVAILKTITKN-------TKPPLSSDV-DLDEIARNTKCEGFTGADLAALVREASILALRES 737 (802)
T ss_pred --CCCCCEEEECCCCHHHHHHHHHHHHCC-------CCCCCCCCC-CHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf --755742450699878899999998535-------799887545-8999851232268753659999999999999999
Q ss_pred HHCCC
Q ss_conf 96296
Q gi|254780163|r 739 ILFGK 743 (798)
Q Consensus 739 il~~~ 743 (798)
+....
T Consensus 738 ~~~~~ 742 (802)
T KOG0733 738 LFEID 742 (802)
T ss_pred HHHCC
T ss_conf 86111
No 16
>KOG0745 consensus
Probab=99.90 E-value=3.2e-22 Score=178.89 Aligned_cols=231 Identities=24% Similarity=0.468 Sum_probs=168.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCC----CCCHH---HHHCCCEEEE
Q ss_conf 6886143200388999998730477337720688612465301104780002564443----10035---5515851777
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGG----ILADS---VDQNPYSVVL 581 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg----~Lte~---vr~~P~sVvl 581 (798)
..|++||||+|||.||++||.-+..++.--|+...+. +||||-|-.. +|++| |.+.--.+|+
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQ-----------AGYVGeDVEsvi~KLl~~A~~nVekAQqGIVf 296 (564)
T KOG0745 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQ-----------AGYVGEDVESVIQKLLQEAEYNVEKAQQGIVF 296 (564)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCHHH-----------CCCCCCCHHHHHHHHHHHCCCCHHHHHCCEEE
T ss_conf 4799778887643899999997088768732552200-----------55345429999999999725789988267388
Q ss_pred ECCHHHCC---H-----------HHHHHHHHHHHHHHCCC---------CCCC--EECCCCEEEEEE---CCCC---HHH
Q ss_conf 40445502---8-----------99999999877750217---------7997--761254299994---2421---455
Q gi|254780163|r 582 LDEIEKSH---P-----------DVLNILLQIMDYGILTD---------QSGK--KISFRNVILIMT---TNAG---ALE 630 (798)
Q Consensus 582 ~DEiEKAh---~-----------~v~~~llqild~G~ltd---------~~Gr--~vdf~n~iii~T---sN~G---~~~ 630 (798)
+|||+|-. + .|+..||.+++ |++.. ..|. .||.+|.++|.. +|+- ++.
T Consensus 297 lDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllE-GtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR 375 (564)
T KOG0745 297 LDEVDKITKKAESIHTSRDVSGEGVQQALLKLLE-GTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRR 375 (564)
T ss_pred EEHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHC-CCEECCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHH
T ss_conf 7601244136765454445662669999999852-627702677877789998589713666888034323569898876
Q ss_pred HHHCCCCCCCCCCH------------HH---HHH-HHHH---------HCCHHHHCCCCEEEECCCCCHHHHHHHHHHH-
Q ss_conf 33036898821114------------88---999-9987---------2887881776828962889999999999999-
Q gi|254780163|r 631 MSKARIGFGSSRND------------DA---DKE-ALRN---------FLSPEFLNRLDSIIPFFPLSSDIIRQVVHKF- 684 (798)
Q Consensus 631 ~~~~~~g~~~~~~~------------~~---~~~-~l~~---------~f~peflnRid~ii~F~~l~~~~~~~i~~~~- 684 (798)
+.+.++||+..... +. ..+ .|++ -+=|||++|+.-+|+|++|++.++.+|+.--
T Consensus 376 ~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPk 455 (564)
T KOG0745 376 LDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPK 455 (564)
T ss_pred HCCHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCHHHHCCCCEEEECCCCCHHHHHHHHHCCH
T ss_conf 30000156788874200110346673046778899986346321355267287716652576524268888999873554
Q ss_pred ---HHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECC
Q ss_conf ---99999999866988999889999999718981015326799999862359999996296768884899996078
Q gi|254780163|r 685 ---IMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKVPLADEILFGKLKKGGGVVKVSLNPD 758 (798)
Q Consensus 685 ---l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~g~~~~~v~~~~~ 758 (798)
+.+....+...++.|.|+++|++.+++.......|||.||-++++.+.++. + . .||..+..|.++.+
T Consensus 456 naL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleam-----f-e-vPGSdI~~V~Vdee 525 (564)
T KOG0745 456 NALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAM-----F-E-VPGSDIKAVLVDEE 525 (564)
T ss_pred HHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC-----C-C-CCCCCEEEEEECHH
T ss_conf 668999999855577469866999999999987614346789999999976401-----4-5-78875479996178
No 17
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.86 E-value=2.2e-19 Score=158.52 Aligned_cols=293 Identities=22% Similarity=0.355 Sum_probs=211.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCHHHHH
Q ss_conf 01555646798899865333321144322113657899986631024531011100112334210000246653458999
Q gi|254780163|r 407 FTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAI 486 (798)
Q Consensus 407 i~~r~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai 486 (798)
|....||+.+-.-++.- +..++.-...-.+--|......|-..+|-...+.+. .-+...++.|.+--+|-+..-
T Consensus 258 i~~~~~p~~~~~~~~~E-----l~rl~~~~~~s~E~~v~r~YLd~l~~LPW~~~t~d~-~dl~~A~~iLd~dHyGL~~vK 331 (784)
T PRK10787 258 IDAAKMPKEAKEKAEAE-----LQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVK-KDLRQAQEILDTDHYGLERVK 331 (784)
T ss_pred HHHCCCCHHHHHHHHHH-----HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC-CCHHHHHHHHHHHHCCHHHHH
T ss_conf 98779998999999999-----999971899894188999999999759988887875-699999998765430657799
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCC
Q ss_conf 99999987752044565787406886143200388999998730477337720688612465301104780002564443
Q gi|254780163|r 487 KKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGG 566 (798)
Q Consensus 487 ~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg 566 (798)
+.|.+.+-..+.. .+..-|| ++|+||+|||||-+||..|..++..++|+-+.--.+ -+-+-|----|||.- .|
T Consensus 332 eRile~lAv~~~~-~~~kg~I--lclvGpPGvGKTSl~~sIA~al~r~f~rislGGv~D---eaeirGHrrTYvgam-pG 404 (784)
T PRK10787 332 DRILEYLAVQSRV-NKIKGPI--LCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRD---EAEIRGHRRTYIGSM-PG 404 (784)
T ss_pred HHHHHHHHHHHHC-CCCCCCE--EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCC---HHHHCCCCCCCCCCC-CH
T ss_conf 9999999999862-4677877--996469987724699999998589869980688788---888256433434436-83
Q ss_pred CCCHHHHH--CCCEEEEECCHHHCCH----HHHHHHHHHHHH---HHCCCCC-CCEECCCCEEEEEECCCCHHHHHHCCC
Q ss_conf 10035551--5851777404455028----999999998777---5021779-977612542999942421455330368
Q gi|254780163|r 567 ILADSVDQ--NPYSVVLLDEIEKSHP----DVLNILLQIMDY---GILTDQS-GKKISFRNVILIMTTNAGALEMSKARI 636 (798)
Q Consensus 567 ~Lte~vr~--~P~sVvl~DEiEKAh~----~v~~~llqild~---G~ltd~~-Gr~vdf~n~iii~TsN~G~~~~~~~~~ 636 (798)
....++++ ..+.|+|||||+|-.. |-...||.|||- -..+|.. +--.|++++++|.|.|-
T Consensus 405 rii~~l~~a~~~nPv~llDEiDK~~~~~~Gdp~salLEvLDpeQN~~F~Dhyl~~~~DlS~v~Fi~TaN~---------- 474 (784)
T PRK10787 405 KLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNS---------- 474 (784)
T ss_pred HHHHHHHHHCCCCCEEEEHHHHHHCCCCCCCHHHHHHHHCCHHHCCCCCCCEEECCCCHHHEEEEEECCC----------
T ss_conf 8999999748988566500355522455899889999845976556400032204645222589973276----------
Q ss_pred CCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC---EEEECHHHHHHHHHCC
Q ss_conf 9882111488999998728878817768289628899999999999999999999986698---8999889999999718
Q gi|254780163|r 637 GFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGI---SFHFSEEVINWLVSHG 713 (798)
Q Consensus 637 g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i---~l~~~~~~~~~l~~~~ 713 (798)
+ . .++.++.|+ +||-+...+.++-..|+..+| +-+++.+.|+ ++.++++++.+|.+ .
T Consensus 475 --------------~-~-ip~pLlDRm-E~i~~~gYt~~eK~~Ia~~~l--~p~~~~~~gl~~~~~~~~~~~~~~ii~-~ 534 (784)
T PRK10787 475 --------------M-N-IPAPLLDRM-EVIRLSGYTEDEKLNIAKRHL--LPKQIERNALKKGELTVDDSAIIGIIR-Y 534 (784)
T ss_pred --------------C-C-CCHHHHHHE-EEEEECCCCHHHHHHHHHHHC--HHHHHHHHCCCCCCCCCCHHHHHHHHH-H
T ss_conf --------------7-7-876776312-155411676788999999745--399999828996567439999999875-3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 981015326799999862359999996296
Q gi|254780163|r 714 YDVKMGARPLERIIKEHVKVPLADEILFGK 743 (798)
Q Consensus 714 ~~~~~GAR~l~r~i~~~i~~~la~~il~~~ 743 (798)
|..+.|-|.|+|.|.+-.-. .+..++.++
T Consensus 535 ytrEaGvR~ler~i~~i~rk-~~~~~~~~~ 563 (784)
T PRK10787 535 YTREAGVRSLEREISKLCRK-AVKQLLLDK 563 (784)
T ss_pred CCCCCCCCCHHHHHHHHHHH-HHHHHHCCC
T ss_conf 36544425168899999999-999997078
No 18
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=99.86 E-value=1.4e-20 Score=166.99 Aligned_cols=315 Identities=22% Similarity=0.353 Sum_probs=229.8
Q ss_pred HCCCEECCHHHHHH-HHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHCC
Q ss_conf 10351211178999-99865420155-56467988998653333211443221136578999866310245310111001
Q gi|254780163|r 386 HHQLRYSKEAIRAA-VQLSVRHFTSR-KLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIASMNRSIHTTSFSRD 463 (798)
Q Consensus 386 ~h~v~~~~~al~~a-v~ls~ryi~~r-~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~gip~~~~~~~ 463 (798)
||-.=..++.=... -.|-.|.=... ++|+-+...+++ -+..++.-...=.+-.|......|-+.+|-.+.+.+
T Consensus 322 yhELG~~~d~~~~~~~~~~~kle~~~e~~P~~~~k~~~~-----El~kL~~l~~~SsE~~v~RnYLDwl~~lPW~~~S~~ 396 (941)
T TIGR00763 322 YHELGIEKDDKDELIEKLKEKLEELKEFLPEEVKKVIEK-----ELTKLELLEPSSSEFTVTRNYLDWLTDLPWGKYSKE 396 (941)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH-----HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 752589998647899999999874057477468999999-----998750588335304679999999983772214702
Q ss_pred -HHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHH---------HCCCC-CCCCC-CCEEEEECCCCHHHHHHHHHHHHHC
Q ss_conf -123342100002466534589999999998775---------20445-65787-4068861432003889999987304
Q gi|254780163|r 464 -DDSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIA---------RAGLS-DPNKP-IGCYVFSGPTGVGKTEISKQLAFAL 531 (798)
Q Consensus 464 -~~~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~---------~~gl~-~~~rP-~g~flf~GptGvGKTelak~la~~~ 531 (798)
++-.|.+..+.|-+-=+|=+.--+.|.+.|-.. +--|. +-.-| | ++|+||+|||||=||+..|..+
T Consensus 397 f~n~Dl~~A~~~LD~DHYGL~~VK~RIlEYlAV~qllemrrkkkPkL~~~~~GpqI--lClvGPPGVGKTSlg~SIA~AL 474 (941)
T TIGR00763 397 FDNLDLKRAKEILDEDHYGLKKVKERILEYLAVQQLLEMRRKKKPKLRGKMKGPQI--LCLVGPPGVGKTSLGKSIAKAL 474 (941)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE--EEEECCCCCCHHHHHHHHHHHH
T ss_conf 66521899999831678888773034135888989998764036444778888767--8720726954222789999996
Q ss_pred CCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHH--CCCEEEEECCHHHCC--HH----HHHHHHHHHH--
Q ss_conf 7733772068861246530110478000256444310035551--585177740445502--89----9999999877--
Q gi|254780163|r 532 GVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQ--NPYSVVLLDEIEKSH--PD----VLNILLQIMD-- 601 (798)
Q Consensus 532 ~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~--~P~sVvl~DEiEKAh--~~----v~~~llqild-- 601 (798)
+..|+||=..=-. .+|-.-|====|||. =.|.+..++++ .-+=|+|+|||+|-. .+ =...||-|||
T Consensus 475 nRkFvR~SlGG~~---DeAEIrGHRRTYvGA-MPGriiQ~lk~~~t~NPl~LlDEIDK~~~~~~~~GDPaSALLEvLDPE 550 (941)
T TIGR00763 475 NRKFVRFSLGGVR---DEAEIRGHRRTYVGA-MPGRIIQGLKKAKTKNPLILLDEIDKIGLKSSFRGDPASALLEVLDPE 550 (941)
T ss_pred CCEEEEEEECCCE---EHHHCCCCCCCCCCC-CHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHCCHH
T ss_conf 8804999526722---031127864320346-725789998760415880686202200167886556378886412864
Q ss_pred -HHHCCCCC-CCEECCCCEE--EEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHH
Q ss_conf -75021779-9776125429--9994242145533036898821114889999987288788177682896288999999
Q gi|254780163|r 602 -YGILTDQS-GKKISFRNVI--LIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDII 677 (798)
Q Consensus 602 -~G~ltd~~-Gr~vdf~n~i--ii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~ 677 (798)
+-...|.. +-.+|.|+++ +|+|+|- + ..=++.+|+|+ +||-.--.+.++-
T Consensus 551 QN~~F~DHYldvp~DLS~V~CyFi~TAN~----~---------------------d~IP~PLLDRM-EvI~lsGY~~~EK 604 (941)
T TIGR00763 551 QNNAFSDHYLDVPFDLSKVLCYFIATANS----I---------------------DTIPRPLLDRM-EVIELSGYTEEEK 604 (941)
T ss_pred HCCCCCCCCCCCCCCHHHHHHHEEECCCC----C---------------------CCCCCCCCCCE-EEEECCCCCHHHH
T ss_conf 36042553002340042002100024475----7---------------------67772213740-2452388876789
Q ss_pred HHHHHHHHHHHHHHHHHC---CCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999866---9889998899999997189810153267999998623599999962
Q gi|254780163|r 678 RQVVHKFIMKLELQLQEK---GISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKVPLADEILF 741 (798)
Q Consensus 678 ~~i~~~~l~~l~~~l~~~---~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~ 741 (798)
..|++.+|=- +.+... .=+|.++|+++..|++ .|.++.|-|+|+|-|++-+ ...|-.++.
T Consensus 605 ~~IA~~yLiP--~~~~~~GL~~~~l~~~d~al~~lI~-~YtREaGVRNL~r~I~~i~-RK~A~~~~~ 667 (941)
T TIGR00763 605 LEIAKKYLIP--KALEDHGLKPDELKISDEALLLLIK-YYTREAGVRNLERQIEKIC-RKAAVKLVE 667 (941)
T ss_pred HHHHHHCCHH--HHHHHHCCCCCCEEECHHHHHHHHH-HHHHHHCCHHHHHHHHHHH-HHHHHHHHH
T ss_conf 9999854713--6798708881322126899999998-7513202133899999999-999999987
No 19
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=99.85 E-value=5.1e-18 Score=148.63 Aligned_cols=388 Identities=24% Similarity=0.394 Sum_probs=224.9
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHH
Q ss_conf 74896676411668999999998548988345201445540467530634312378999999987203898399973616
Q gi|254780163|r 227 NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIH 306 (798)
Q Consensus 227 n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih 306 (798)
..+|+|+||.|||-++..+|..+ +..++.++...+ -+||.||-|+||+.+++|++.+.+.|+|||||.
T Consensus 242 G~ll~GPPGtGktllaka~ane~----------~a~f~~inGPei--msky~Ge~e~~lr~if~eaeenaP~iifideid 309 (980)
T TIGR01243 242 GVLLYGPPGTGKTLLAKAVANEA----------GAYFIAINGPEI--MSKYYGESEERLREIFKEAEENAPSIIFIDEID 309 (980)
T ss_pred CEEEECCCCCCHHHHHHHHHHHC----------CCEEEEECCCHH--HHHHCCCCHHHHHHHHHHHHHCCCCEEEEECHH
T ss_conf 35875589861789999987530----------551788506034--433136307899999986530587078741211
Q ss_pred HHHCCCCCCCCCCC-----HHHHH---HHHHCCCCEEEEEECCHHHHHHHHHCCHHHHH--HCEE-EEECCCCHHHHHHH
Q ss_conf 63015544434477-----78888---76630266038873048999998520111432--0014-43068786899999
Q gi|254780163|r 307 TLVGAGSASGISVD-----ASNLL---KPALSSGAVRCIGSTTYSEYRQFFEKDKALVR--RFQK-IDVSEPSIEDAIEI 375 (798)
Q Consensus 307 ~ligag~~~g~~~d-----~an~l---kP~L~rg~~~~IgatT~~ey~~~~e~d~al~r--rF~~-i~v~ep~~~~~~~i 375 (798)
.|- .+.+..... ++.+| -..-.||.+-+||||.-.. .-||||.| ||.. |.|..|+...-.+|
T Consensus 310 aia--Pkr~e~~Geve~r~v~qlltlmdGlk~rG~v~viGatnrP~-----a~dPalrrPGrfdrei~~~~Pd~~~r~ei 382 (980)
T TIGR01243 310 AIA--PKREEVTGEVEKRVVAQLLTLMDGLKGRGKVIVIGATNRPD-----ALDPALRRPGRFDREIEIGVPDKEGRKEI 382 (980)
T ss_pred HCC--CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC-----CCCHHHCCCCCCCCEEEECCCCHHHHHHH
T ss_conf 007--64100001688999999999974002487289981468850-----02622427886443357418854567888
Q ss_pred HHHHHHHHHHHCCCEECCHHH-HHHHHHHHHHCCCCCC-HHHHHHHHHHH---HHHHHHHHHHHHHC-------------
Q ss_conf 986127665410351211178-9999986542015556-46798899865---33332114432211-------------
Q gi|254780163|r 376 VKGIKPYFEEHHQLRYSKEAI-RAAVQLSVRHFTSRKL-PDKAIDVIDEA---GASQILQPLSKRRK------------- 437 (798)
Q Consensus 376 L~~~~~~ye~~h~v~~~~~al-~~av~ls~ryi~~r~l-PdkAidllDea---~a~~~~~~~~~~~~------------- 437 (798)
|+--.. +..+..+.= .+.+......-.+..+ -.|.-.+++.. .+...+...-+...
T Consensus 383 l~~htr------~mP~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (980)
T TIGR01243 383 LQIHTR------NMPLAEDVDKDAVIKVLKDLEKDERFEKEKIEKIIEKVSKANSEDEIKEILKEDGNVYVEVRNRLIDK 456 (980)
T ss_pred HHHHHC------CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 876414------78750110057899999876665566788999999988631026789999750121246789999999
Q ss_pred ----------CCCHHHHHHHH-----HHC------------CCCCCHHHH-----HCCH-------------HHHHHHHC
Q ss_conf ----------36578999866-----310------------245310111-----0011-------------23342100
Q gi|254780163|r 438 ----------FITEKDIKKTI-----ASM------------NRSIHTTSF-----SRDD-------------DSVLSNLE 472 (798)
Q Consensus 438 ----------~~~~~~i~~~~-----~~~------------~~gip~~~~-----~~~~-------------~~~l~~l~ 472 (798)
-....|++... ..+ ...||...+ +..+ ++.+....
T Consensus 457 ~l~~la~~thG~~Gadlaal~~eaam~~lrr~~~eg~i~~ea~~iP~~vl~~lkvt~~df~ealk~~~P~~~re~~~evP 536 (980)
T TIGR01243 457 LLDKLAEVTHGFVGADLAALAKEAAMAALRRLIREGKINLEAEEIPKEVLEELKVTMKDFKEALKMVEPSALREVLVEVP 536 (980)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEEECC
T ss_conf 99988654236203559999899999999987402774502677579999873222899999985106234110002337
Q ss_pred CHHHHHHHCHHHHHHHHHHHHHH--------HHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHH
Q ss_conf 00246653458999999999877--------5204456578740688614320038899999873047733772068861
Q gi|254780163|r 473 KNLGTVVYGQEEAIKKLSSSIKI--------ARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYM 544 (798)
Q Consensus 473 ~~l~~~v~GQ~~ai~~v~~~i~~--------~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~ 544 (798)
.---.-+=|-+++-..+-+++.+ .+.|+.+| -|++|| ||+|+|||-|||++|..++-++|.+--.|-
T Consensus 537 ~v~W~diGGlee~kq~lreaveWPlk~~~~f~k~G~~PP---~Gvll~-GPPGtGktllakava~es~anfi~v~GPe~- 611 (980)
T TIGR01243 537 NVKWEDIGGLEEVKQELREAVEWPLKAPEVFEKLGIRPP---KGVLLF-GPPGTGKTLLAKAVATESGANFIAVRGPEI- 611 (980)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCC---CCEEEE-CCCCCCHHHHHHHHHHCCCCCEEEECCCHH-
T ss_conf 511001466789999998775234440589986078899---734874-689861688888774014564677407312-
Q ss_pred CCCCCCHHCCCCCHHCCCCCC--CCCCHHHHHCCCEEEEECCHHHCCH-------------HHHHHHHHHHHHHHCCCCC
Q ss_conf 246530110478000256444--3100355515851777404455028-------------9999999987775021779
Q gi|254780163|r 545 ERHAVSRLIGAPPGYVGFGQG--GILADSVDQNPYSVVLLDEIEKSHP-------------DVLNILLQIMDYGILTDQS 609 (798)
Q Consensus 545 e~~~vs~LiGappGYvG~~eg--g~Lte~vr~~P~sVvl~DEiEKAh~-------------~v~~~llqild~G~ltd~~ 609 (798)
.|+-+| -.|- -.+.++-|+.--+||+||||+--.| .|.|-||.=||
T Consensus 612 ----lskWvG-------ese~~ir~if~~arq~aP~~~f~deidaiaP~rG~~~~~~~vtd~~~nqll~e~d-------- 672 (980)
T TIGR01243 612 ----LSKWVG-------ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGASLDEKGVTDRIVNQLLTELD-------- 672 (980)
T ss_pred ----HHHHHC-------HHHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH--------
T ss_conf ----234403-------2479999999986412873787302111054124421001026899999998640--------
Q ss_pred CCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 977612542999942421455330368988211148899999872887881776828962889999999999999999
Q gi|254780163|r 610 GKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMK 687 (798)
Q Consensus 610 Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~ 687 (798)
| ....++.++|-.+|-- +...+ ..++| +|+|.+|..-+-+.+.-..|...+-+.
T Consensus 673 G-~~~~~~vvvi~atnrP-----------------di~dP---allrP---Gr~dr~i~vP~Pd~~ar~~ifk~ht~~ 726 (980)
T TIGR01243 673 G-LEELSDVVVIAATNRP-----------------DILDP---ALLRP---GRLDRLILVPAPDEEARLEIFKIHTRS 726 (980)
T ss_pred C-CCCCCCEEEEEECCCC-----------------CCCCC---CCCCC---CCCCEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 4-4343665898615887-----------------42361---00488---741216860598556767676553111
No 20
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.5e-17 Score=145.26 Aligned_cols=292 Identities=25% Similarity=0.376 Sum_probs=204.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCHHHHH
Q ss_conf 01555646798899865333321144322113657899986631024531011100112334210000246653458999
Q gi|254780163|r 407 FTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAI 486 (798)
Q Consensus 407 i~~r~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai 486 (798)
|....||+-|-+..+. .++.++.-...-.+.-|......|...+|-.+-+.+ ..-|...++.|.+.-+|=++.-
T Consensus 259 ie~~~~p~evkek~~~-----El~kL~~m~~~SaE~~ViRnYlDwll~lPW~~~sk~-~~Dl~~a~~iLd~dHYGLekVK 332 (782)
T COG0466 259 IEKLKLPKEAKEKAEK-----ELKKLETMSPMSAEATVIRNYLDWLLDLPWGKRSKD-KLDLKKAEKILDKDHYGLEKVK 332 (782)
T ss_pred HHHCCCCHHHHHHHHH-----HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCH-HHHHHHHHHHHCCCCCCCHHHH
T ss_conf 7516999899999999-----999985079999168899899999982887655421-3229999987443556711689
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCC----CHHCCCCCHHCCC
Q ss_conf 999999877520445657874068861432003889999987304773377206886124653----0110478000256
Q gi|254780163|r 487 KKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAV----SRLIGAPPGYVGF 562 (798)
Q Consensus 487 ~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~v----s~LiGappGYvG~ 562 (798)
+.|.+.+-..+. .+.-.-|| ++|+||+|||||-|+|..|..++..++||-..--.+...+ -.-|||=||
T Consensus 333 eRIlEyLAV~~l-~~~~kGpI--LcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGaMPG---- 405 (782)
T COG0466 333 ERILEYLAVQKL-TKKLKGPI--LCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPG---- 405 (782)
T ss_pred HHHHHHHHHHHH-HCCCCCCE--EEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCH----
T ss_conf 999999999986-14678857--99978998870118999999958977999547654277753553123356872----
Q ss_pred CCCCCCCHHHHH--CCCEEEEECCHHHCCHH----HHHHHHHHHHH---HHCCCCC-CCEECCCCEEEEEECCCCHHHHH
Q ss_conf 444310035551--58517774044550289----99999998777---5021779-97761254299994242145533
Q gi|254780163|r 563 GQGGILADSVDQ--NPYSVVLLDEIEKSHPD----VLNILLQIMDY---GILTDQS-GKKISFRNVILIMTTNAGALEMS 632 (798)
Q Consensus 563 ~egg~Lte~vr~--~P~sVvl~DEiEKAh~~----v~~~llqild~---G~ltd~~-Gr~vdf~n~iii~TsN~G~~~~~ 632 (798)
.+..++++ .-+-|+|+|||+|-..+ =-..||.|||- -...|.. .-..|.++.++|.|+|-=
T Consensus 406 ----rIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl----- 476 (782)
T COG0466 406 ----KIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSL----- 476 (782)
T ss_pred ----HHHHHHHHHCCCCCEEEEECHHHCCCCCCCCHHHHHHHHCCHHHCCCHHHCCCCCCCCHHHEEEEEECCCC-----
T ss_conf ----89999998677687478640333167777886888886269765676122201676644325888603751-----
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC---CEEEECHHHHHHH
Q ss_conf 0368988211148899999872887881776828962889999999999999999999998669---8899988999999
Q gi|254780163|r 633 KARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKG---ISFHFSEEVINWL 709 (798)
Q Consensus 633 ~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~---i~l~~~~~~~~~l 709 (798)
..-+..++.|+ +||-+...+.++-..|+..+| +-+.+.+.| -.+.++|+++.+|
T Consensus 477 --------------------~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~L--iPk~~~~~gL~~~el~i~d~ai~~i 533 (782)
T COG0466 477 --------------------DTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHL--IPKQLKEHGLKKGELTITDEAIKDI 533 (782)
T ss_pred --------------------CCCCHHHHCCE-EEEEECCCCHHHHHHHHHHHC--CHHHHHHCCCCCCCEEECHHHHHHH
T ss_conf --------------------32986784303-056426888699999999844--5689997599823355658999999
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 971898101532679999986235999999629676
Q gi|254780163|r 710 VSHGYDVKMGARPLERIIKEHVKVPLADEILFGKLK 745 (798)
Q Consensus 710 ~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~ 745 (798)
.+ .|..+.|-|.|+|.|.+.. ...+..++.++.+
T Consensus 534 I~-~YTREAGVR~LeR~i~ki~-RK~~~~i~~~~~k 567 (782)
T COG0466 534 IR-YYTREAGVRNLEREIAKIC-RKAAKKILLKKEK 567 (782)
T ss_pred HH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCC
T ss_conf 99-8767621038999999999-9999999725756
No 21
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.8e-16 Score=136.10 Aligned_cols=429 Identities=22% Similarity=0.289 Sum_probs=230.1
Q ss_pred HHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99862267787489667641166899999999854898834520144554046753063431237899999998720389
Q gi|254780163|r 217 IQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYA 296 (798)
Q Consensus 217 iqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~ 296 (798)
.+.+....-..+++-|+||.|||.++.++|.. +..+ +.++... -.++|.|+-|.++..++.+++...
T Consensus 10 ~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~---~~~~--------~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~ 76 (494)
T COG0464 10 FKKLGIEPPKGVLLHGPPGTGKTLLARALANE---GAEF--------LSINGPE--ILSKYVGESELRLRELFEEAEKLA 76 (494)
T ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHC---CCCC--------CCCCCCH--HHHHHCCHHHHHHHHHHHHHHHCC
T ss_conf 98706676421000368876503665676512---5410--------1356522--432220510899999989998639
Q ss_pred CEEEEECCHHHHHCCCCCCCCCCC---HHHH--HHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHH--HCEE-EEECCCC
Q ss_conf 839997361663015544434477---7888--876630266038873048999998520111432--0014-4306878
Q gi|254780163|r 297 NAILYIDEIHTLVGAGSASGISVD---ASNL--LKPALSSGAVRCIGSTTYSEYRQFFEKDKALVR--RFQK-IDVSEPS 368 (798)
Q Consensus 297 ~~ilfideih~ligag~~~g~~~d---~an~--lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~r--rF~~-i~v~ep~ 368 (798)
..|+|+|+++.+.+.-.+..+... ++.+ +...+.++.+-++|+| .....-|+|+.| ||.. +.+.-|.
T Consensus 77 ~~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (494)
T COG0464 77 PSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIGAT-----NRPDGLDPAKRRPGRFDREIEVNLPD 151 (494)
T ss_pred CCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECC-----CCCCCHHHHHHCCHHHHHHHHHCCCC
T ss_conf 7636404433212344444210457899989987642465634674134-----45321127775313767887633654
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH--HHHHHHCCCCHHHHH
Q ss_conf 689999998612766541035121-11789999986542015556467988998653333211--443221136578999
Q gi|254780163|r 369 IEDAIEIVKGIKPYFEEHHQLRYS-KEAIRAAVQLSVRHFTSRKLPDKAIDVIDEAGASQILQ--PLSKRRKFITEKDIK 445 (798)
Q Consensus 369 ~~~~~~iL~~~~~~ye~~h~v~~~-~~al~~av~ls~ryi~~r~lPdkAidllDea~a~~~~~--~~~~~~~~~~~~~i~ 445 (798)
......|+... .|.+.+. +..+...+..+.-|.... .-.+..++....... ........++..+..
T Consensus 152 ~~~~~~i~~~~------~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 220 (494)
T COG0464 152 EAGRLEILQIH------TRLMFLGPPGTGKTLAARTVGKSGAD-----LGALAKEAALRELRRAIDLVGEYIGVTEDDFE 220 (494)
T ss_pred HHCCHHHHHHH------HHCCCCCCCCCHHHHHHHHCCHHHHH-----HHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHH
T ss_conf 10142465101------11012578642788998732321324-----88774178888875002333033202199999
Q ss_pred HHHHHCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHH----HHCCCCC-CCCCCCEEEEECCCCHHH
Q ss_conf 86631024531011100112334210000246653458999999999877----5204456-578740688614320038
Q gi|254780163|r 446 KTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSIKI----ARAGLSD-PNKPIGCYVFSGPTGVGK 520 (798)
Q Consensus 446 ~~~~~~~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~----~~~gl~~-~~rP~g~flf~GptGvGK 520 (798)
+.+.... +- ......++...+. .+.|-+.+...+-+++.. ... +.. ..+|...+||.||+|+||
T Consensus 221 ~~l~~~~-~~-~~~~~~~~~v~~~--------diggl~~~k~~l~e~v~~~~~~~e~-~~~~~~~~~~giLl~GpPGtGK 289 (494)
T COG0464 221 EALKKVL-PS-RGVLFEDEDVTLD--------DIGGLEEAKEELKEAIETPLKRPEL-FRKLGLRPPKGVLLYGPPGTGK 289 (494)
T ss_pred HHHHHCC-CC-CCCEECCCCCEEE--------EECCHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCEEEEECCCCCCH
T ss_conf 9998612-45-5630036885145--------3236377999999999999970887-6325898883699988999758
Q ss_pred HHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCC--CCCCHHHHHCCCEEEEECCHHHCC---------
Q ss_conf 899999873047733772068861246530110478000256444--310035551585177740445502---------
Q gi|254780163|r 521 TEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQG--GILADSVDQNPYSVVLLDEIEKSH--------- 589 (798)
Q Consensus 521 Telak~la~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~eg--g~Lte~vr~~P~sVvl~DEiEKAh--------- 589 (798)
|.|||++|..+..+++.+++++|+.+ |||--+- -.+.+..++..-|||+||||++--
T Consensus 290 T~lAkava~~~~~~fi~v~~~~l~sk------------~vGesek~ir~~F~~A~~~~p~iifiDEiDs~~~~r~~~~~~ 357 (494)
T COG0464 290 TLLAKAVALESRSRFISVKGSELLSK------------WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDG 357 (494)
T ss_pred HHHHHHHHHHCCCCEEEECCHHHHHH------------HHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCCC
T ss_conf 99999987544982488433555407------------765999999999999996699889748866674128998763
Q ss_pred --HHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEE
Q ss_conf --899999999877750217799776125429999424214553303689882111488999998728878817768289
Q gi|254780163|r 590 --PDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSII 667 (798)
Q Consensus 590 --~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii 667 (798)
..|.+-||..+|. +. +.+++++|.++|--. .. .++ ..+| +|+|.++
T Consensus 358 ~~~rv~~~ll~~~d~--~e-------~~~~v~vi~aTN~p~-------------~l----d~a---~lR~---gRfd~~i 405 (494)
T COG0464 358 SGRRVVGQLLTELDG--IE-------KAEGVLVIAATNRPD-------------DL----DPA---LLRP---GRFDRLI 405 (494)
T ss_pred HHHHHHHHHHHHHHC--CC-------CCCCEEEEECCCCCC-------------CC----CHH---HHCC---CCCEEEE
T ss_conf 799999999999747--54-------437648996479833-------------26----875---6243---6630378
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 628899999999999999999999986698899988999999971898101532679999986235999999
Q gi|254780163|r 668 PFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKVPLADEI 739 (798)
Q Consensus 668 ~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~i 739 (798)
.|.+-+..+..+|+...+.+.... -.++-..+.+++.. ..|-...+..+++.-....+.+.+
T Consensus 406 ~v~~pd~~~r~~i~~~~~~~~~~~--------~~~~~~~~~l~~~t--~~~sgadi~~i~~ea~~~~~~~~~ 467 (494)
T COG0464 406 YVPLPDLEERLEIFKIHLRDKKPP--------LAEDVDLEELAEIT--EGYSGADIAALVREAALEALREAR 467 (494)
T ss_pred EECCCCHHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 717989899999999985415651--------15564199999875--277899999999999998998545
No 22
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.77 E-value=2.7e-17 Score=143.42 Aligned_cols=245 Identities=24% Similarity=0.370 Sum_probs=167.6
Q ss_pred HHHHHCCCCHHHHHHHHH------HHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEH
Q ss_conf 887754861122217899------99999986226778748966764116689999999985489883452014455404
Q gi|254780163|r 195 TEKVKKGKVDILVGRHEE------INRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDM 268 (798)
Q Consensus 195 Te~AreGKLDPVIGRd~E------I~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~ 268 (798)
-++-|=..||-|||-+.= ++++| ...+-.+.||-|+||||||++++-+|... +..+++|+.
T Consensus 4 Aer~RP~~lde~vGQ~hllg~~~~L~~~i---~~~~~~s~Il~GPPG~GKTTlA~iiA~~~----------~~~f~~lnA 70 (417)
T PRK13342 4 AERMRPKTLDEVVGQEHLLGPGKPLRRMI---EAGRLSSMILWGPPGTGKTTLARIIAGAT----------DAEFEALSA 70 (417)
T ss_pred HHHHCCCCHHHHCCCHHHHCCCHHHHHHH---HCCCCCEEEEECCCCCCHHHHHHHHHHHH----------CCCEEEEEC
T ss_conf 16449998888579877608971999999---76999759988969998999999999986----------898899614
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHCCC---CCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 675306343123789999999872038---98399973616630155444344777888876630266038873048999
Q gi|254780163|r 269 GNLIAGTRYRGDFEERIKKIVKEIESY---ANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEY 345 (798)
Q Consensus 269 ~~l~ag~~~rg~fe~r~~~~~~~~~~~---~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~IgatT~~ey 345 (798)
.. +|. ..++.++++++.. +..||||||||.+ +-+.-+.|.|++.+|.+.+|||||..-|
T Consensus 71 ~~--~gv-------~dir~ii~~a~~~~~~~~tilfiDEIHRf---------nK~QQD~LLp~vE~g~iiLIgATTENP~ 132 (417)
T PRK13342 71 VT--SGV-------KDLREVIEEAKQSRLGRRTILFIDEIHRF---------NKAQQDALLPHVEDGTITLIGATTENPS 132 (417)
T ss_pred CC--CCH-------HHHHHHHHHHHHHHCCCCEEEEEECHHHC---------CHHHHHHHHHHHHCCCEEEEEECCCCCH
T ss_conf 10--388-------99999999988631489659999782005---------8899999987511265699974157922
Q ss_pred HHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHH--HHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 998520111432001443068786899999986127665--410351211178999998654201555646798899865
Q gi|254780163|r 346 RQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFE--EHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEA 423 (798)
Q Consensus 346 ~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye--~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea 423 (798)
|+-.+||-.|-+.+.++..+.++-..||+..... | ..+++.++++|+...+..|.== -.+|+.+|+-|
T Consensus 133 ---f~in~aLlSRc~vf~l~~L~~~di~~iL~ral~~-e~~~~~~i~i~~~al~~i~~~s~GD------aR~aLN~LE~a 202 (417)
T PRK13342 133 ---FEVNPALLSRAQVFELKPLSEEDLEQLLKRALED-ERGLGRKLELDDEALDALARLADGD------ARRALNLLELA 202 (417)
T ss_pred ---HHCCHHHHHHHHHEECCCCCHHHHHHHHHHHHHH-HHCCCCCCCCCHHHHHHHHHHCCCC------HHHHHHHHHHH
T ss_conf ---5348989856570020589999999999999987-7433788776999999999814985------99999999999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCHH--HHHHHHHHH
Q ss_conf 333321144322113657899986631024531011100112334210000246653458--999999999
Q gi|254780163|r 424 GASQILQPLSKRRKFITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQE--EAIKKLSSS 492 (798)
Q Consensus 424 ~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~--~ai~~v~~~ 492 (798)
.. .......|+.+++.+.+.+.. . ...++..+ --++-.-|.+.|=|-| .|+--+++-
T Consensus 203 ~~------~~~~~~~i~~~~~~~~~~~~~--~---~yDk~gd~-HYd~iSAf~KSiRGSDpdAAlyyLarm 261 (417)
T PRK13342 203 AA------AAAGGEVITLELLEEALQRRA--A---RYDKDGDE-HYDLISALHKSIRGSDPDAALYYLARM 261 (417)
T ss_pred HH------CCCCCCCCCHHHHHHHHHHCC--C---CCCCCCCH-HHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 85------258997348999999984410--3---57778634-789999999985169954899999999
No 23
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.76 E-value=3.4e-16 Score=135.54 Aligned_cols=304 Identities=19% Similarity=0.254 Sum_probs=184.5
Q ss_pred HHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHH---H--CCCCEEEEEE--CCHHHHHHHHHCCHHHHHHCEE
Q ss_conf 9872038983999736166301554443447778888766---3--0266038873--0489999985201114320014
Q gi|254780163|r 289 VKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPA---L--SSGAVRCIGS--TTYSEYRQFFEKDKALVRRFQK 361 (798)
Q Consensus 289 ~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~---L--~rg~~~~Iga--tT~~ey~~~~e~d~al~rrF~~ 361 (798)
++.+...++.++.+-++|..++-- -....||-. + .+..+=+++. +-|.| |.+-+..
T Consensus 74 I~~~~~~~~~lfvLkDfh~fl~d~-------~i~R~Lrdla~~~~~~~~tlIlls~~~~lP~e----------L~~~~~~ 136 (491)
T CHL00195 74 IERLTSETPTLFLLKDFNLFLNDI-------SISRKLRNLSRILKLQSKTIIIIASELNIPKE----------LKDLITV 136 (491)
T ss_pred HHHCCCCCCEEEEEECCCHHHCCH-------HHHHHHHHHHHHHHHCCCEEEEEECCCCCCHH----------HHHCEEE
T ss_conf 986168898399993686243287-------99999999999996479859999479989978----------8722579
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 43068786899999986127665410351211178999998654201555646798899865333321144322113657
Q gi|254780163|r 362 IDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITE 441 (798)
Q Consensus 362 i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea~a~~~~~~~~~~~~~~~~ 441 (798)
+.++=|+.++-..+|.+.... .++....+.++..++-+.= | .+ .|+. ..+...-..+..++.
T Consensus 137 l~~~LP~~~Ei~~~l~~~~~~----~~~~~~~~~~~~l~~a~~G------L-----t~-~e~~--~~~~~ai~~~g~i~~ 198 (491)
T CHL00195 137 LDFPLPNESEINKELKRLINS----LNIPIDSELLENLTRACQG------L-----SL-ERIR--RVLAKIIATYKTIDE 198 (491)
T ss_pred EECCCCCHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHHCC------C-----CH-HHHH--HHHHHHHHHCCCCCH
T ss_conf 804894999999999999985----2888998999999999669------9-----99-9999--999999985599883
Q ss_pred HHHHHHHHHCC-----CCCCHHH---HHCCHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEE
Q ss_conf 89998663102-----4531011---100112334210000246653458999999999877520445657874068861
Q gi|254780163|r 442 KDIKKTIASMN-----RSIHTTS---FSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFS 513 (798)
Q Consensus 442 ~~i~~~~~~~~-----~gip~~~---~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~ 513 (798)
+|+..++.... +|+=... -.-++---|.+|.+.|.+|=- | .... -...||.. |-|++ ++
T Consensus 199 ~~i~~i~~~K~q~i~~~g~Le~~~~~~~~~~vGGl~~lK~wl~~r~~----~---f~~~--a~~~gl~~---PkGvL-L~ 265 (491)
T CHL00195 199 ESIQIILEEKRQIISQTEILEFYSVNEKISDIGGLDNLKDWLKKRST----S---FSKQ--AENYGLPT---PRGLL-LV 265 (491)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCHHHHHHHHHHHHH----H---HHHH--HHHCCCCC---CCEEE-EE
T ss_conf 32899999999998356965887489980414688999999999889----8---6233--66459999---98799-97
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCC--CCCHHHHHCCCEEEEECCHHHCC--
Q ss_conf 43200388999998730477337720688612465301104780002564443--10035551585177740445502--
Q gi|254780163|r 514 GPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGG--ILADSVDQNPYSVVLLDEIEKSH-- 589 (798)
Q Consensus 514 GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg--~Lte~vr~~P~sVvl~DEiEKAh-- 589 (798)
||+|+|||.+||++|...+-+|+++|||+++. +|||-.|.- .+....+..--|||.+|||||+-
T Consensus 266 GpPG~GKtl~AKAvA~e~~~p~l~l~~~~l~~------------~~vGesE~~~r~~f~~A~~~aP~ilfiDEidk~~~~ 333 (491)
T CHL00195 266 GIQGTGKSLTAKAIANEWNLPLLRLDVGKLFG------------GIVGESESRMRQMIQLAETISPCILWIDEIDKAFSG 333 (491)
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHH------------HHCCHHHHHHHHHHHHHHHHCCEEEEEEHHHHHCCC
T ss_conf 99998789999999866389469966799756------------006704999999999998619858997465454258
Q ss_pred ----------HHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHH
Q ss_conf ----------8999999998777502177997761254299994242145533036898821114889999987288788
Q gi|254780163|r 590 ----------PDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEF 659 (798)
Q Consensus 590 ----------~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~pef 659 (798)
..|++-||.-|++ . -+..++|.|+|- + ..+.|||
T Consensus 334 ~~~~~d~g~s~rv~~~~Lt~m~e-----~------~~~VfViattN~----~---------------------~~L~pel 377 (491)
T CHL00195 334 LDSKGDSGTSNRVLATFITWLSE-----K------KSPVFVVATANN----I---------------------DSLPLEL 377 (491)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCC-----C------CCCEEEEEECCC----C---------------------CCCCHHH
T ss_conf 88888872328999999998646-----8------997699995899----7---------------------5589877
Q ss_pred H--CCCCEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 1--7768289628899999999999999999
Q gi|254780163|r 660 L--NRLDSIIPFFPLSSDIIRQVVHKFIMKL 688 (798)
Q Consensus 660 l--nRid~ii~F~~l~~~~~~~i~~~~l~~l 688 (798)
+ +|+|+++....-+.++-.+|.++++.+.
T Consensus 378 lR~GRFD~~~~v~lP~~~~R~~I~~ihl~~~ 408 (491)
T CHL00195 378 LRKGRFDEIFFLDLPNLEERELIFKIHLKRF 408 (491)
T ss_pred CCCCCCCEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 0898777047648959899999999998544
No 24
>KOG0735 consensus
Probab=99.73 E-value=7.5e-14 Score=118.69 Aligned_cols=427 Identities=19% Similarity=0.245 Sum_probs=240.5
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 67787489667641166899999999854898834520144554046753063431237899999998720389839997
Q gi|254780163|r 223 RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYI 302 (798)
Q Consensus 223 R~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfi 302 (798)
-+.-|.+|-|++|.|||.+|+.++...-.. .+....++ -++-++|++ ---+..-+..++.+...+++.|.+.
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~----~~~hv~~v---~Cs~l~~~~-~e~iQk~l~~vfse~~~~~PSiIvL 500 (952)
T KOG0735 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKD----LIAHVEIV---SCSTLDGSS-LEKIQKFLNNVFSEALWYAPSIIVL 500 (952)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCC----CCEEEEEE---ECHHCCCHH-HHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 346618986799877769999999875156----50699997---522104204-8999999999999988637808997
Q ss_pred CCHHHHHCCCCCCCCCCCH---------HHHHHHHHCCCCE-EEEEECCHHHHHHHHHCCHHHHHHCEE-EEECCCCHHH
Q ss_conf 3616630155444344777---------8888766302660-388730489999985201114320014-4306878689
Q gi|254780163|r 303 DEIHTLVGAGSASGISVDA---------SNLLKPALSSGAV-RCIGSTTYSEYRQFFEKDKALVRRFQK-IDVSEPSIED 371 (798)
Q Consensus 303 deih~ligag~~~g~~~d~---------an~lkP~L~rg~~-~~IgatT~~ey~~~~e~d~al~rrF~~-i~v~ep~~~~ 371 (798)
|++|.|+|+...+++..+. -.+.|-++.++.. .+|+ |-+|..+ |-+---..++||. +.+..|...+
T Consensus 501 Ddld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Ia--t~qe~qt-l~~~L~s~~~Fq~~~~L~ap~~~~ 577 (952)
T KOG0735 501 DDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIA--TGQELQT-LNPLLVSPLLFQIVIALPAPAVTR 577 (952)
T ss_pred CCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE--ECHHHHH-CCHHHCCCCCEEEEEECCCCCHHH
T ss_conf 0503540568444773028999999999999999870685799998--5143420-385334763147888158923567
Q ss_pred HHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 999998612766541035121117899999865420155--564679889986533332114432211365789998663
Q gi|254780163|r 372 AIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSR--KLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIA 449 (798)
Q Consensus 372 ~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r--~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~ 449 (798)
--.||..+-..- ..-++.+-|........-|..-- .|-|+||- ...++..+...+.++..+....+.
T Consensus 578 R~~IL~~~~s~~----~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~-------~a~leris~~~klltke~f~ksL~ 646 (952)
T KOG0735 578 RKEILTTIFSKN----LSDITMDDLDFLSVKTEGYLATDLVIFVERAIH-------EAFLERISNGPKLLTKELFEKSLK 646 (952)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------HHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 999999999755----345456789988876078440447999999999-------999887516763101889999987
Q ss_pred HCCCCCCHHH--HHCCHHHHHHHHCCHHH-HHHHCHHHHHHHHHHHHHH--------HHCCCCCCCCCCCEEEEECCCCH
Q ss_conf 1024531011--10011233421000024-6653458999999999877--------52044565787406886143200
Q gi|254780163|r 450 SMNRSIHTTS--FSRDDDSVLSNLEKNLG-TVVYGQEEAIKKLSSSIKI--------ARAGLSDPNKPIGCYVFSGPTGV 518 (798)
Q Consensus 450 ~~~~gip~~~--~~~~~~~~l~~l~~~l~-~~v~GQ~~ai~~v~~~i~~--------~~~gl~~~~rP~g~flf~GptGv 518 (798)
.. .|... +....+ ..|+ ..|-|-.++...+-+.|.+ ...+|.- +.|.+|| ||+|+
T Consensus 647 ~F---~P~aLR~ik~~k~-------tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~---~~giLLy-GppGc 712 (952)
T KOG0735 647 DF---VPLALRGIKLVKS-------TGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRL---RTGILLY-GPPGC 712 (952)
T ss_pred HC---CHHHHHHCCCCCC-------CCCCCEECCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCC---CCCEEEE-CCCCC
T ss_conf 40---7677640301566-------787710033589999999999855410367886088666---5545887-79998
Q ss_pred HHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCC-CCCHHHHHCCCEEEEECCHHHCCH-------
Q ss_conf 388999998730477337720688612465301104780002564443-100355515851777404455028-------
Q gi|254780163|r 519 GKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGG-ILADSVDQNPYSVVLLDEIEKSHP------- 590 (798)
Q Consensus 519 GKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg-~Lte~vr~~P~sVvl~DEiEKAh~------- 590 (798)
|||.||-++|-...-++|.+--.|.-. +.||+. +|+- .|.++-+-.--||++|||++--.|
T Consensus 713 GKT~la~a~a~~~~~~fisvKGPElL~-----KyIGaS------Eq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsT 781 (952)
T KOG0735 713 GKTLLASAIASNSNLRFISVKGPELLS-----KYIGAS------EQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDST 781 (952)
T ss_pred CHHHHHHHHHHHCCEEEEEECCHHHHH-----HHHCCC------HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 578888888853780599825889999-----874500------788999999865149748971210243766687777
Q ss_pred ----HHHHHHHHHHHHHHCCCCCCCEECCCCEEE-EEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCE
Q ss_conf ----999999998777502177997761254299-994242145533036898821114889999987288788177682
Q gi|254780163|r 591 ----DVLNILLQIMDYGILTDQSGKKISFRNVIL-IMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDS 665 (798)
Q Consensus 591 ----~v~~~llqild~G~ltd~~Gr~vdf~n~ii-i~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ 665 (798)
.|.|-||.-|| | -.. ....+| -.||- . +...+++ .|| +|+|.
T Consensus 782 GVTDRVVNQlLTelD-G-------~Eg-l~GV~i~aaTsR--------p----------dliDpAL---LRp---GRlD~ 828 (952)
T KOG0735 782 GVTDRVVNQLLTELD-G-------AEG-LDGVYILAATSR--------P----------DLIDPAL---LRP---GRLDK 828 (952)
T ss_pred CCHHHHHHHHHHHHC-C-------CCC-CCEEEEEEECCC--------C----------CCCCHHH---CCC---CCCCE
T ss_conf 742999999987603-6-------334-453899973378--------3----------4367766---288---76540
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8962889999999999999999999998669889998899999997189810153267999998623599999962
Q gi|254780163|r 666 IIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKVPLADEILF 741 (798)
Q Consensus 666 ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~ 741 (798)
.|.-..-++.+-..|... |..++. .-++.-.++++.+. +--.| -.|.-.+.+--...+-+.+..
T Consensus 829 ~v~C~~P~~~eRl~il~~----ls~s~~------~~~~vdl~~~a~~T-~g~tg-ADlq~ll~~A~l~avh~~l~~ 892 (952)
T KOG0735 829 LVYCPLPDEPERLEILQV----LSNSLL------KDTDVDLECLAQKT-DGFTG-ADLQSLLYNAQLAAVHEILKR 892 (952)
T ss_pred EEECCCCCCHHHHHHHHH----HHHCCC------CCCCCCHHHHHHHC-CCCCH-HHHHHHHHHHHHHHHHHHHHH
T ss_conf 156799892899999999----853457------75210168876521-78736-659989877799999999986
No 25
>KOG0741 consensus
Probab=99.72 E-value=4.5e-16 Score=134.68 Aligned_cols=358 Identities=23% Similarity=0.392 Sum_probs=208.1
Q ss_pred HHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCC-
Q ss_conf 9998622677874896676411668999999998548988345201445540467530634312378999999987203-
Q gi|254780163|r 216 TIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIES- 294 (798)
Q Consensus 216 iiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~- 294 (798)
+++-|.-++=...+|-|+||.|||-++..+.... +..-|....|-.|++ ||.||-|+.++.++.+++.
T Consensus 247 vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkML-NArePKIVNGPeIL~----------KYVGeSE~NvR~LFaDAEeE 315 (744)
T KOG0741 247 VIEQLGIKHVKGILLYGPPGTGKTLIARQIGKML-NAREPKIVNGPEILN----------KYVGESEENVRKLFADAEEE 315 (744)
T ss_pred HHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHH-CCCCCCCCCCHHHHH----------HHHCCCHHHHHHHHHHHHHH
T ss_conf 9987195112357887799987018999987874-579986347578898----------76063078899998757999
Q ss_pred -------CCCEEEEECCHHHHHC-CCCCCCCC---CCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHCCHHHHH--
Q ss_conf -------8983999736166301-55444344---77788887663----0266038873048999998520111432--
Q gi|254780163|r 295 -------YANAILYIDEIHTLVG-AGSASGIS---VDASNLLKPAL----SSGAVRCIGSTTYSEYRQFFEKDKALVR-- 357 (798)
Q Consensus 295 -------~~~~ilfideih~lig-ag~~~g~~---~d~an~lkP~L----~rg~~~~IgatT~~ey~~~~e~d~al~r-- 357 (798)
++=-|.-+|||..|-- -|+..|++ ..+-|-|.--+ +-..|-+||-|.-.. --|.||-|
T Consensus 316 ~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~D-----lIDEALLRPG 390 (744)
T KOG0741 316 QRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKD-----LIDEALLRPG 390 (744)
T ss_pred HHHHCCCCCCEEEEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCEEEEECCCCHH-----HHHHHHCCCC
T ss_conf 98437667725999634679997448878988631899999998532287661678994047366-----6788755887
Q ss_pred HCEE-EEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHH-H-----------HHH
Q ss_conf 0014-43068786899999986127665410351211178999998654201555646798899-8-----------653
Q gi|254780163|r 358 RFQK-IDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVI-D-----------EAG 424 (798)
Q Consensus 358 rF~~-i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidll-D-----------ea~ 424 (798)
||++ +.|.=|+..--++||+--..+.+.|.... +|--++....|++-| -+.-|.=| . .++
T Consensus 391 RlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~-~dVdl~elA~lTKNf------SGAEleglVksA~S~A~nR~vk~~ 463 (744)
T KOG0741 391 RLEVQMEISLPDEKGRLQILKIHTKRMRENNKLS-ADVDLKELAALTKNF------SGAELEGLVKSAQSFAMNRHVKAG 463 (744)
T ss_pred CEEEEEEEECCCCCCCEEEEEHHHHHHHHCCCCC-CCCCHHHHHHHHCCC------CHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 1699999846887672788871445566517877-776989999985578------626789999988889888661368
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCC-CC
Q ss_conf 33321144322113657899986631024531011100112334210000246653458999999999877520445-65
Q gi|254780163|r 425 ASQILQPLSKRRKFITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLS-DP 503 (798)
Q Consensus 425 a~~~~~~~~~~~~~~~~~~i~~~~~~~~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~-~~ 503 (798)
...++.......-.|+..|....+... -|..-.+.++ |+..+..-+|---+-+..+.+.=.+.-.-++ ..
T Consensus 464 ~~~~~~~~~~e~lkV~r~DFl~aL~dV---kPAFG~see~------l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~ 534 (744)
T KOG0741 464 GKVEVDPVAIENLKVTRGDFLNALEDV---KPAFGISEED------LERFVMNGMINWGPPVTRILDDGKLLVQQVKNSE 534 (744)
T ss_pred CCEECCCHHHHHEEECHHHHHHHHHHC---CCCCCCCHHH------HHHHHHCCCEEECCCHHHHHHHHHHHHHHHHCCC
T ss_conf 631127111432020288789898735---7544878899------9999857854516307788766889999863346
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEE----EHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEE
Q ss_conf 78740688614320038899999873047733772----06886124653011047800025644431003555158517
Q gi|254780163|r 504 NKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRF----DMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSV 579 (798)
Q Consensus 504 ~rP~g~flf~GptGvGKTelak~la~~~~~~lir~----dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sV 579 (798)
+.|+-|.||.||+|+|||-||-.+|..++=++|++ ||.-|+|...+.-+-+ ..+---+.|-||
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k-------------~F~DAYkS~lsi 601 (744)
T KOG0741 535 RSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKK-------------IFEDAYKSPLSI 601 (744)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHHHHCCCCHHHHHHHHHH-------------HHHHHHCCCCEE
T ss_conf 6763589986699887688999997527998479737787037466788999999-------------888763386508
Q ss_pred EEECCHHH------CCHHHHHHHHHHHHHHHCC--CCCCCEECCCCEEEEEEC
Q ss_conf 77404455------0289999999987775021--779977612542999942
Q gi|254780163|r 580 VLLDEIEK------SHPDVLNILLQIMDYGILT--DQSGKKISFRNVILIMTT 624 (798)
Q Consensus 580 vl~DEiEK------Ah~~v~~~llqild~G~lt--d~~Gr~vdf~n~iii~Ts 624 (798)
|++|+||. --|..-|+.||.|-= .|. --+||+ -+|+.||
T Consensus 602 ivvDdiErLiD~vpIGPRfSN~vlQaL~V-llK~~ppkg~k-----Lli~~TT 648 (744)
T KOG0741 602 IVVDDIERLLDYVPIGPRFSNLVLQALLV-LLKKQPPKGRK-----LLIFGTT 648 (744)
T ss_pred EEECCHHHHHCCCCCCCCHHHHHHHHHHH-HHCCCCCCCCE-----EEEEECC
T ss_conf 99815565620024684035799999999-95248988845-----9999624
No 26
>KOG0736 consensus
Probab=99.70 E-value=1.5e-14 Score=123.82 Aligned_cols=431 Identities=21% Similarity=0.323 Sum_probs=244.6
Q ss_pred HHHHHHHHHHHHHHHHHCCC--------CCC-EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCC
Q ss_conf 22217899999999862267--------787-489667641166899999999854898834520144554046753063
Q gi|254780163|r 205 ILVGRHEEINRTIQILCRRS--------KNN-PLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGT 275 (798)
Q Consensus 205 PVIGRd~EI~riiqIL~RR~--------KNn-~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~ 275 (798)
+..+++.-+..+.+||+-+. +|- .+|-|+||+|||.+|+..|+.. +..+++.|-.+|+|-+
T Consensus 402 ~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l----------g~h~~evdc~el~~~s 471 (953)
T KOG0736 402 SPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL----------GLHLLEVDCYELVAES 471 (953)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCHHCCCCCEEEEEECCCCCCHHHHHHHHHHHH----------CCCEEECCHHHHHHCC
T ss_conf 876602799999998486558530013355379986799987579999999983----------8725701389886436
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCH--HHHHHHHH-------CCCCEEEEEECCHHHHH
Q ss_conf 4312378999999987203898399973616630155444344777--88887663-------02660388730489999
Q gi|254780163|r 276 RYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDA--SNLLKPAL-------SSGAVRCIGSTTYSEYR 346 (798)
Q Consensus 276 ~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~--an~lkP~L-------~rg~~~~IgatT~~ey~ 346 (798)
++--|-+++.+...++...+.|||+..+..+- ..+.| +.|+ ...+.--| .++..-+||+|+-.
T Consensus 472 --~~~~etkl~~~f~~a~~~~pavifl~~~dvl~--id~dg-ged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~--- 543 (953)
T KOG0736 472 --ASHTETKLQAIFSRARRCSPAVLFLRNLDVLG--IDQDG-GEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSI--- 543 (953)
T ss_pred --CCHHHHHHHHHHHHHHHCCCEEEEEECCCEEE--ECCCC-CHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC---
T ss_conf --33137899999998752686289872242455--33777-44277999999997202356779965999962530---
Q ss_pred HHHHCCHHHHHH--CEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHH-HHHHHHHHH--------HHCCCCCCHHH
Q ss_conf 985201114320--0144306878689999998612766541035121117-899999865--------42015556467
Q gi|254780163|r 347 QFFEKDKALVRR--FQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEA-IRAAVQLSV--------RHFTSRKLPDK 415 (798)
Q Consensus 347 ~~~e~d~al~rr--F~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~a-l~~av~ls~--------ryi~~r~lPdk 415 (798)
++=++--|+ +..|.++.|+.++-.+||+. |-.||. +.++. +.-++.-.. .|.++- |--
T Consensus 544 ---~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~----y~~~~~--~n~~v~~k~~a~~t~gfs~~~L~~l~~~~--s~~ 612 (953)
T KOG0736 544 ---EDLPADIQSLFLHEIEVPALSEEQRLEILQW----YLNHLP--LNQDVNLKQLARKTSGFSFGDLEALVAHS--SLA 612 (953)
T ss_pred ---CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHH----HHHCCC--CCHHHHHHHHHHHCCCCCHHHHHHHHCCC--HHH
T ss_conf ---2398789875265213778887889999999----983065--23577878999865898777799771475--188
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHCCCCHHHHHHHHHHCCC------C---CCHHHHHCCHHHHHHHHCCHHHHHHHC
Q ss_conf 988998653333211443-----22113657899986631024------5---310111001123342100002466534
Q gi|254780163|r 416 AIDVIDEAGASQILQPLS-----KRRKFITEKDIKKTIASMNR------S---IHTTSFSRDDDSVLSNLEKNLGTVVYG 481 (798)
Q Consensus 416 AidllDea~a~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~------g---ip~~~~~~~~~~~l~~l~~~l~~~v~G 481 (798)
+.+-+.+++-.--.+... -.-..++++|+...+.++.+ | ||.-.. + -|=|
T Consensus 613 ~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~W--d--------------DVGG 676 (953)
T KOG0736 613 AKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSW--D--------------DVGG 676 (953)
T ss_pred HHHHHHHHCCCCCCHHCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCH--H--------------CCCC
T ss_conf 89999752014431110245401246410198888898898886555307988896460--0--------------1557
Q ss_pred HHHHHHHHHHHHHH-------HHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCC
Q ss_conf 58999999999877-------52044565787406886143200388999998730477337720688612465301104
Q gi|254780163|r 482 QEEAIKKLSSSIKI-------ARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIG 554 (798)
Q Consensus 482 Q~~ai~~v~~~i~~-------~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiG 554 (798)
=+++-+.|.+.|+. .-.||+.. .-.||-||+|+|||-+||++|-...-+|+.+--.|.-.
T Consensus 677 LeevK~eIldTIqlPL~hpeLfssglrkR----SGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLN--------- 743 (953)
T KOG0736 677 LEEVKTEILDTIQLPLKHPELFSSGLRKR----SGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLN--------- 743 (953)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHCCCCCC----CEEEEECCCCCCHHHHHHHHHHHCEEEEEEECCHHHHH---------
T ss_conf 89999999987547543756651254313----50588779998557999998754303678505889988---------
Q ss_pred CCCHHCCCCCCC--CCCHHHHHCCCEEEEECCHHHCCHH---------HHHH-HHHHHHH-HHCCCCCCCEECCCCEEEE
Q ss_conf 780002564443--1003555158517774044550289---------9999-9998777-5021779977612542999
Q gi|254780163|r 555 APPGYVGFGQGG--ILADSVDQNPYSVVLLDEIEKSHPD---------VLNI-LLQIMDY-GILTDQSGKKISFRNVILI 621 (798)
Q Consensus 555 appGYvG~~egg--~Lte~vr~~P~sVvl~DEiEKAh~~---------v~~~-llqild~-G~ltd~~Gr~vdf~n~iii 621 (798)
=|||-.|.. ...|+-|..-=|||+|||++--.|. |++- .-|+|-| --|.|+ +-....||
T Consensus 744 ---MYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~-----~s~~VFVi 815 (953)
T KOG0736 744 ---MYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDS-----SSQDVFVI 815 (953)
T ss_pred ---HHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC-----CCCCEEEE
T ss_conf ---7743018889999998544697499831212327567887886540899999999986266678-----88865998
Q ss_pred EECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHH-HHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 9424214553303689882111488999998728878817768289628899999-999999999999999986698899
Q gi|254780163|r 622 MTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDI-IRQVVHKFIMKLELQLQEKGISFH 700 (798)
Q Consensus 622 ~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~-~~~i~~~~l~~l~~~l~~~~i~l~ 700 (798)
=.|| ++ +...+ ...|| +|+|..+...|=...+ ..+| |+.+.+++ .|+
T Consensus 816 GATN-------RP----------DLLDp---ALLRP---GRFDKLvyvG~~~d~esk~~v----L~AlTrkF-----kLd 863 (953)
T KOG0736 816 GATN-------RP----------DLLDP---ALLRP---GRFDKLVYVGPNEDAESKLRV----LEALTRKF-----KLD 863 (953)
T ss_pred ECCC-------CC----------CCCCH---HHCCC---CCCCEEEEECCCCCHHHHHHH----HHHHHHHC-----CCC
T ss_conf 2588-------85----------54576---55388---765524885588567889999----99988770-----287
Q ss_pred ECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 98899999997189810153267999998623599
Q gi|254780163|r 701 FSEEVINWLVSHGYDVKMGARPLERIIKEHVKVPL 735 (798)
Q Consensus 701 ~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~l 735 (798)
-+-+ +.-++++|-..-.||- +--.+.+-....+
T Consensus 864 edVd-L~eiAk~cp~~~TGAD-lYsLCSdA~l~Ai 896 (953)
T KOG0736 864 EDVD-LVEIAKKCPPNMTGAD-LYSLCSDAMLAAI 896 (953)
T ss_pred CCCC-HHHHHHHCCCCCCHHH-HHHHHHHHHHHHH
T ss_conf 8767-9999963896775247-9999889999999
No 27
>KOG2170 consensus
Probab=99.70 E-value=1.1e-15 Score=131.74 Aligned_cols=222 Identities=24% Similarity=0.417 Sum_probs=147.9
Q ss_pred HHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH-----HCCCCEEEEEH
Q ss_conf 3342100002466534589999999998775204456578740688614320038899999873-----04773377206
Q gi|254780163|r 466 SVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAF-----ALGVQLLRFDM 540 (798)
Q Consensus 466 ~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~-----~~~~~lir~dm 540 (798)
..+-.|+..|...++||.-|++.|+.+++-..+.= .|.||+ ++=|-|+||+||...++.+|. |+..++++.
T Consensus 71 ~~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~-~p~KPL-vLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~-- 146 (344)
T KOG2170 71 NDLDGLEKDLARALFGQHLAKQLVVNALKSHWANP-NPRKPL-VLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHH-- 146 (344)
T ss_pred CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCC-CCCCCE-EEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHH--
T ss_conf 56067899999986320879999999999986289-999875-89830899875648999999998751125626887--
Q ss_pred HHHHCCCCCCHHCCCCCHHCC-CCC--CCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCC
Q ss_conf 886124653011047800025-644--43100355515851777404455028999999998777502177997761254
Q gi|254780163|r 541 SEYMERHAVSRLIGAPPGYVG-FGQ--GGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRN 617 (798)
Q Consensus 541 sey~e~~~vs~LiGappGYvG-~~e--gg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n 617 (798)
-++.+==+-|-|+- |.+ --++-.-++..+-|+.+|||+||-||.+++.+=.-||.- ...--+||++
T Consensus 147 -------fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyy----p~v~gv~frk 215 (344)
T KOG2170 147 -------FVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYY----PQVSGVDFRK 215 (344)
T ss_pred -------HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHCCHHHHHHHHHHHCCC----CCCCCCCCCC
T ss_conf -------65541599767899999999999999998557754873105435876999876663046----3213554551
Q ss_pred EEEEEECCCCHHHHHHC-----CCCCCCCCCH-HHHHHHHH-HHCCH--------HH--HCCCCEEEECCCCCHHHHHHH
Q ss_conf 29999424214553303-----6898821114-88999998-72887--------88--177682896288999999999
Q gi|254780163|r 618 VILIMTTNAGALEMSKA-----RIGFGSSRND-DADKEALR-NFLSP--------EF--LNRLDSIIPFFPLSSDIIRQV 680 (798)
Q Consensus 618 ~iii~TsN~G~~~~~~~-----~~g~~~~~~~-~~~~~~l~-~~f~p--------ef--lnRid~ii~F~~l~~~~~~~i 680 (798)
+|+|+-||.|..+|.+- ..|-..++.. +....++. ..|-+ ++ .|+||..|||-||+..++..-
T Consensus 216 aIFIfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C 295 (344)
T KOG2170 216 AIFIFLSNAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSC 295 (344)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 48999717861477999999997479756452655269998755354456640142154667765057676238999999
Q ss_pred HHHHHHHHHHHHHHCCCEEEECHHHHHHHHH
Q ss_conf 9999999999998669889998899999997
Q gi|254780163|r 681 VHKFIMKLELQLQEKGISFHFSEEVINWLVS 711 (798)
Q Consensus 681 ~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~ 711 (798)
++-+| +.+| +..+.+.++.+++
T Consensus 296 ~r~el-------~~rg--~~~d~~~~erva~ 317 (344)
T KOG2170 296 IRAEL-------RKRG--LAPDQDFVERVAN 317 (344)
T ss_pred HHHHH-------HHCC--CCCCHHHHHHHHH
T ss_conf 99999-------8654--6552689999998
No 28
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.69 E-value=6.1e-16 Score=133.73 Aligned_cols=179 Identities=27% Similarity=0.400 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHH
Q ss_conf 22217899999999862267787489667641166899999999854898834520144554046753063431237899
Q gi|254780163|r 205 ILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEER 284 (798)
Q Consensus 205 PVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r 284 (798)
.++|...=++|+|+ ..+=.|.||-|+||+|||+++.-+|... +..++.|+ +..+|. ..
T Consensus 35 hllg~g~~Lrr~i~---~~~~~S~Il~GPPGtGKTTLA~iIA~~t----------~~~F~~ls--Av~sgv-------kd 92 (726)
T PRK13341 35 HILGEGRLLRRAIK---ADRVGSLILYGPPGVGKTTLARIIANHT----------RAHFSSLN--AVLAGV-------KD 92 (726)
T ss_pred HHCCCCCHHHHHHH---CCCCCEEEEECCCCCCHHHHHHHHHHHH----------CCCEEEEE--CCCCCH-------HH
T ss_conf 54289828999997---6999827888979999999999998874----------88679985--620377-------99
Q ss_pred HHHHHHHHCC----C-CCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHC
Q ss_conf 9999987203----8-9839997361663015544434477788887663026603887304899999852011143200
Q gi|254780163|r 285 IKKIVKEIES----Y-ANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRF 359 (798)
Q Consensus 285 ~~~~~~~~~~----~-~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF 359 (798)
++.++++++. . .+.||||||||-.= + .--+.|-|++.+|.|..|||||..-| |+-++||-.|-
T Consensus 93 lr~ii~~A~~~~~~~g~~tILFIDEIHRfN---K------~QQD~LLp~vE~G~i~LIGATTENP~---F~vn~ALlSR~ 160 (726)
T PRK13341 93 LRAEVDAAKERLERHGKRTILFIDEVHRFN---K------AQQDALLPWVENGTVTLIGATTENPY---FEVNKALVSRS 160 (726)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECHHHCC---H------HHHHHHHHHHCCCEEEEEEECCCCCC---EEECHHHHHHC
T ss_conf 999999999998745996599986254258---8------78998788860683899970478974---36429888323
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHH---HCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 14430687868999999861276654---10351211178999998654201555646798899865
Q gi|254780163|r 360 QKIDVSEPSIEDAIEIVKGIKPYFEE---HHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEA 423 (798)
Q Consensus 360 ~~i~v~ep~~~~~~~iL~~~~~~ye~---~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea 423 (798)
+.+.++..+.++-..||+..-...|. .++|.++++|+...+.+|.== -.+|+..|+-|
T Consensus 161 ~vf~L~~L~~~dl~~il~rAl~d~~~g~~~~~i~i~~~al~~l~~~s~GD------aR~aLN~LEla 221 (726)
T PRK13341 161 RLFRLKSLEDEDLHQLLKRALQDKERGYGDRNIDLEPEAEKHLVDVANGD------ARSLLNALELA 221 (726)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC------HHHHHHHHHHH
T ss_conf 46674389999999999999876743256678775989999999975973------99999999999
No 29
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.68 E-value=6.7e-14 Score=119.04 Aligned_cols=351 Identities=18% Similarity=0.213 Sum_probs=231.5
Q ss_pred CCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHCEEE--EECCCCHHHHH
Q ss_conf 9839997361663015544434477788887663026603887304899999852011143200144--30687868999
Q gi|254780163|r 296 ANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKI--DVSEPSIEDAI 373 (798)
Q Consensus 296 ~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i--~v~ep~~~~~~ 373 (798)
+.-||+||+= .+....|.-+|.+...+|+.|.+..+....++.. .|..| .+.=|.. +-+
T Consensus 3 k~kILiVDDd-------------~~~r~~l~~~L~~~g~~v~~a~~~~~al~~l~~~-----~~dlvl~Di~mP~~-~Gl 63 (469)
T PRK10923 3 RGIVWVVDDD-------------SSIRWVLERALAGAGLTCTTFENGNEVLEALASK-----TPDVLLSDIRMPGM-DGL 63 (469)
T ss_pred CCEEEEEECC-------------HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC-----CCCEEEECCCCCCC-CHH
T ss_conf 9979999498-------------9999999999987799899989999999998669-----99999878999998-999
Q ss_pred HHHHHHHHHHHHHCCCEECC----HHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99986127665410351211----178999998-6542015556467988998653333211443221136578999866
Q gi|254780163|r 374 EIVKGIKPYFEEHHQLRYSK----EAIRAAVQL-SVRHFTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTI 448 (798)
Q Consensus 374 ~iL~~~~~~ye~~h~v~~~~----~al~~av~l-s~ryi~~r~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~ 448 (798)
.+|+.++..+-.-.-|-+|- +....|.+. +.-|+.-=+-|+.-+..+..|-...+.+ +
T Consensus 64 ~ll~~lr~~~~~~pvIviT~~~~~~~av~A~~~GA~dyL~KP~~~~~L~~~v~ral~~~~~~-----~------------ 126 (469)
T PRK10923 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ-----Q------------ 126 (469)
T ss_pred HHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHH-----H------------
T ss_conf 99999984298997899989999899999985570443008899999999999999999998-----6------------
Q ss_pred HHCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 31024531011100112334210000246653458999999999877520445657874068861432003889999987
Q gi|254780163|r 449 ASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLA 528 (798)
Q Consensus 449 ~~~~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la 528 (798)
... ..+.. .-...+||+..++..+.+.+.+. ...+.| .|+.|++|+||..+|+++-
T Consensus 127 -~~~-~~~~~---------------~~~~~liG~S~~m~~v~~~i~~~----a~~~~p---VLI~GE~GTGK~~~Ar~IH 182 (469)
T PRK10923 127 -QPR-NIQVN---------------GPTTDIIGEAPAMQDVFRIIGRL----SRSSIS---VLINGESGTGKELVAHALH 182 (469)
T ss_pred -HHH-HHHHC---------------CCCCCCEECCHHHHHHHHHHHHH----HCCCCC---EEEECCCCCCHHHHHHHHH
T ss_conf -544-31210---------------67556546899999999999998----588997---8998989826999999999
Q ss_pred HHC---CCCEEEEEHHHHHCCCCCCHHCCCCCHH-CCCCC--CCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHH
Q ss_conf 304---7733772068861246530110478000-25644--43100355515851777404455028999999998777
Q gi|254780163|r 529 FAL---GVQLLRFDMSEYMERHAVSRLIGAPPGY-VGFGQ--GGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDY 602 (798)
Q Consensus 529 ~~~---~~~lir~dmsey~e~~~vs~LiGappGY-vG~~e--gg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~ 602 (798)
..+ ..+|+.+||+-..+..--+.|.|...|+ .|-.+ -|. +.+...+.++||||+.-.++++.-||++|++
T Consensus 183 ~~S~r~~~pfi~vnC~~~~~~~~e~eLFG~~~gaf~ga~~~~~g~----~e~a~~GTLfLdeI~~L~~~~Q~kLl~~L~~ 258 (469)
T PRK10923 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGR----FEQADGGTLFLDEIGDMPLDVQTRLLRVLAD 258 (469)
T ss_pred HCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC----HHHCCCCCEEHHHHHHCCHHHHHHHHHHHHC
T ss_conf 748877999578767889977899997087667878864245873----6643899265663664899999999999855
Q ss_pred HHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEE-EECCCCC--HHHHHH
Q ss_conf 5021779977612542999942421455330368988211148899999872887881776828-9628899--999999
Q gi|254780163|r 603 GILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSI-IPFFPLS--SDIIRQ 679 (798)
Q Consensus 603 G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~i-i~F~~l~--~~~~~~ 679 (798)
|..+--.|.+---.|+=||.|||..-. ...-+..|+++|+.|+..+ |..-||. .+++..
T Consensus 259 ~~~~~~g~~~~~~~d~RiIaat~~~L~------------------~~v~~g~Fr~dLyyrL~~~~I~lPpLReR~eDI~~ 320 (469)
T PRK10923 259 GQFYRVGGYAPVKVDVRIIAATHQNLE------------------QRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPR 320 (469)
T ss_pred CCEEECCCCCEEEECCEEEEECCCCHH------------------HHHHHCCHHHHHHHHHHHHCCCCCCHHHCHHHHHH
T ss_conf 937857998512214379970787999------------------98660817799998644240158465446534999
Q ss_pred HHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999999998669889998899999997189810153267999998623
Q gi|254780163|r 680 VVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVK 732 (798)
Q Consensus 680 i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~ 732 (798)
+++-++.+...+.. .-...+++++...|....+-- -.|.|+.++++-+.
T Consensus 321 L~~~fl~~~~~~~~--~~~~~~s~~a~~~L~~y~WPG--NvrEL~n~ier~~~ 369 (469)
T PRK10923 321 LARHFLQVAARELG--VEAKLLHPETEAALTRLAWPG--NVRQLENTCRWLTV 369 (469)
T ss_pred HHHHHHHHHHHHCC--CCCCCCCHHHHHHHHCCCCCC--HHHHHHHHHHHHHH
T ss_conf 99999999999859--997878999999997499998--79999999999998
No 30
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491 This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome. ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=99.67 E-value=1.9e-15 Score=130.20 Aligned_cols=266 Identities=23% Similarity=0.352 Sum_probs=183.1
Q ss_pred HCCHHHHHHHCHHHHHHHHHHHH----HHHHCC--CCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHH
Q ss_conf 00002466534589999999998----775204--456578740688614320038899999873047733772068861
Q gi|254780163|r 471 LEKNLGTVVYGQEEAIKKLSSSI----KIARAG--LSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYM 544 (798)
Q Consensus 471 l~~~l~~~v~GQ~~ai~~v~~~i----~~~~~g--l~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~ 544 (798)
.-..|-++||||++|-.+|+-|+ +|++.. |++-=-|= ..|..|||||||||.|+.||.-.+-+||.+--+-|+
T Consensus 6 iV~~LD~yIiGQ~~AKk~VAiALrNRyrR~~L~~~L~~EV~PK-NILMiGpTGVGKTEIARRlAKL~~aPFiKVEAtKfT 84 (463)
T TIGR00390 6 IVAELDKYIIGQDEAKKAVAIALRNRYRRSQLEEELKDEVTPK-NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT 84 (463)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf 8875144220636678899999886677612871113565874-304327889854479999999844891466641001
Q ss_pred CCCCCCHHCCCCCHHCCCCCCCC---CC------------------------HHH-------------HHCCCEEEEECC
Q ss_conf 24653011047800025644431---00------------------------355-------------515851777404
Q gi|254780163|r 545 ERHAVSRLIGAPPGYVGFGQGGI---LA------------------------DSV-------------DQNPYSVVLLDE 584 (798)
Q Consensus 545 e~~~vs~LiGappGYvG~~egg~---Lt------------------------e~v-------------r~~P~sVvl~DE 584 (798)
|= ||||-|=... |+ |++ -++||. .+|.+
T Consensus 85 EV-----------GYVGrdVeSmvRDL~~~aV~lV~~e~~~~~r~~aee~~~erI~~~L~pp~~n~sGvknPfe-~f~~~ 152 (463)
T TIGR00390 85 EV-----------GYVGRDVESMVRDLVDTAVKLVKEEKIEKVRDRAEEAAEERIVDKLLPPAKNQSGVKNPFE-MFWGS 152 (463)
T ss_pred EC-----------CEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH-HEECC
T ss_conf 10-----------2142410036787899999999998899889999999988999872888988776667223-00056
Q ss_pred HH----HCCHHHHHHHHHHHHH--------HHCCCCCCCEECCCCEE--EEEECCCCHHHH--HH------CCCCCCCCC
Q ss_conf 45----5028999999998777--------50217799776125429--999424214553--30------368988211
Q gi|254780163|r 585 IE----KSHPDVLNILLQIMDY--------GILTDQSGKKISFRNVI--LIMTTNAGALEM--SK------ARIGFGSSR 642 (798)
Q Consensus 585 iE----KAh~~v~~~llqild~--------G~ltd~~Gr~vdf~n~i--ii~TsN~G~~~~--~~------~~~g~~~~~ 642 (798)
.| +++.....-+-+=+-+ |.|-|-. =+|+.+... +-.-++.|...- .. ..++-....
T Consensus 153 ~ePN~~~e~~~~~~~~~~klr~r~ahqlalGeLDd~~-iei~v~~~~pf~~~e~~~pp~~e~~~~~l~~~l~~l~~~~kk 231 (463)
T TIGR00390 153 EEPNEKDEEESSREALRKKLRERMAHQLALGELDDKE-IEIEVSAKSPFSGIEILAPPGMEEMTMNLQSLLQNLGPDKKK 231 (463)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE-EEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCE
T ss_conf 6874024689999999999999877663036646715-899861378712675058885567767899998620453200
Q ss_pred CHH----------------------HH-HHHHH-----------------------------------------------
Q ss_conf 148----------------------89-99998-----------------------------------------------
Q gi|254780163|r 643 NDD----------------------AD-KEALR----------------------------------------------- 652 (798)
Q Consensus 643 ~~~----------------------~~-~~~l~----------------------------------------------- 652 (798)
.++ .+ ++++.
T Consensus 232 kr~l~ik~A~~~L~~Ee~~kL~d~e~~~~~A~~~vE~~GiiFIDEIDKIa~~~~e~S~~DvSrEGVQRDlLPiVEGS~V~ 311 (463)
T TIGR00390 232 KRKLKIKEAKKALIAEEAAKLVDPEEIKQEAIDRVEQSGIIFIDEIDKIAKKGKESSGADVSREGVQRDLLPIVEGSTVN 311 (463)
T ss_pred ECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 01145699999989998873369666438999999847828985303542168886788876556510114202266643
Q ss_pred ----------------HHC--------CHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHH----HHHHHHCCCEEEECHH
Q ss_conf ----------------728--------878817768289628899999999999999999----9999866988999889
Q gi|254780163|r 653 ----------------NFL--------SPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKL----ELQLQEKGISFHFSEE 704 (798)
Q Consensus 653 ----------------~~f--------~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l----~~~l~~~~i~l~~~~~ 704 (798)
.-| =||+=+|+.==|=...||.+++.+|+.--=+.| .+.|+-.||.|.|+++
T Consensus 312 TKyG~VkTdHiLFIAaGAF~lAKPSDLIPELQGRfPirVEL~~Lt~~d~~rIL~~p~~Sl~kQY~ALl~~eGv~i~F~d~ 391 (463)
T TIGR00390 312 TKYGSVKTDHILFIAAGAFHLAKPSDLIPELQGRFPIRVELEALTVDDFERILTEPKNSLIKQYQALLKVEGVNIEFSDE 391 (463)
T ss_pred EECCEEECCHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEECHH
T ss_conf 10010422157876752320277766663110667377876763299999962083436899999988762764033556
Q ss_pred HHHHHHHCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC
Q ss_conf 9999997189-----8101532679999986235999999629676888489999607
Q gi|254780163|r 705 VINWLVSHGY-----DVKMGARPLERIIKEHVKVPLADEILFGKLKKGGGVVKVSLNP 757 (798)
Q Consensus 705 ~~~~l~~~~~-----~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~g~~~~~v~~~~ 757 (798)
|++.||+..| +...|||-|.-++++.+++ |-| .. ++-+.-+|+++.
T Consensus 392 AI~~iAe~ay~~N~~teniGARRLHTv~E~lled-----isF-ea-~D~~~~~~~I~~ 442 (463)
T TIGR00390 392 AIKKIAELAYNVNQKTENIGARRLHTVLERLLED-----ISF-EA-PDVSGQKVTITA 442 (463)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH-----HCC-CC-CCCCCCEEEECH
T ss_conf 8999999999816442334650466899999987-----512-66-686343245078
No 31
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.66 E-value=3e-13 Score=114.41 Aligned_cols=348 Identities=16% Similarity=0.199 Sum_probs=220.7
Q ss_pred CEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEEC--CCCHHHHHH
Q ss_conf 839997361663015544434477788887663026603887304899999852011143200144306--878689999
Q gi|254780163|r 297 NAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVS--EPSIEDAIE 374 (798)
Q Consensus 297 ~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~--ep~~~~~~~ 374 (798)
+-||.||+= -+....|+-.|.+....+..|.+..|-.+.++.. +|..|-++ =|.. +-+.
T Consensus 5 ~rILIVDDd-------------~~ir~~l~~~L~~~G~~V~~a~~~~~Al~~l~~~-----~~DlvllDi~mP~~-~Gle 65 (457)
T PRK11361 5 NRILIVDDE-------------DNVRRMLSTAFALQGFETHCANNGRTALHLFADI-----HPDVVLMDIRMPEM-DGIK 65 (457)
T ss_pred CCEEEECCC-------------HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC-----CCCEEEEECCCCCC-CHHH
T ss_conf 928998399-------------9999999999997799899989999999998668-----98999982879999-9999
Q ss_pred HHHHHHHHHHHHCCCEECC----HHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 9986127665410351211----178999998-65420155564679889986533332114432211365789998663
Q gi|254780163|r 375 IVKGIKPYFEEHHQLRYSK----EAIRAAVQL-SVRHFTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIA 449 (798)
Q Consensus 375 iL~~~~~~ye~~h~v~~~~----~al~~av~l-s~ryi~~r~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~ 449 (798)
+|+.++...-.-.-|-+|- +....|+++ +.-|++-=|-||.-+.++..|-...++.. + ..
T Consensus 66 ll~~ir~~~p~~pvIvlTa~~~~~~av~A~k~GA~Dyl~KPf~~~~L~~~v~rAl~~~~l~~-----------~----~~ 130 (457)
T PRK11361 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQSMKK-----------E----IR 130 (457)
T ss_pred HHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-----------H----HH
T ss_conf 99999820989938999689998999999975966325699999999999999999988777-----------7----76
Q ss_pred HCCCCCCHHHHHCCHHHHHHHHCC-HHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 102453101110011233421000-0246653458999999999877520445657874068861432003889999987
Q gi|254780163|r 450 SMNRSIHTTSFSRDDDSVLSNLEK-NLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLA 528 (798)
Q Consensus 450 ~~~~gip~~~~~~~~~~~l~~l~~-~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la 528 (798)
.... .+.. .-...++|+..++..+.+.+.+. .+.+.| .|+.|+||+||.-+|+++-
T Consensus 131 ~l~~----------------~~~~~~~~~~lig~S~~m~~v~~~i~~~----A~s~~~---VLI~GEsGTGKe~~Ar~IH 187 (457)
T PRK11361 131 HLHQ----------------ALSTSWQWGHILTNSPAMMDICKDTAKI----ALSQAS---VLISGESGTGKELIARAIH 187 (457)
T ss_pred HHHH----------------HHCCCCCCCCCEECCHHHHHHHHHHHHH----HCCCCC---EEEECCCCCCHHHHHHHHH
T ss_conf 6654----------------3201245677454699999999999998----488995---8998899857899999999
Q ss_pred HHC---CCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHH-------CCCEEEEECCHHHCCHHHHHHHHH
Q ss_conf 304---7733772068861246530110478000256444310035551-------585177740445502899999999
Q gi|254780163|r 529 FAL---GVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQ-------NPYSVVLLDEIEKSHPDVLNILLQ 598 (798)
Q Consensus 529 ~~~---~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~-------~P~sVvl~DEiEKAh~~v~~~llq 598 (798)
..+ +.+|+.+||+-..+.---|.|.|.-. |-.|.+... .-.+-++||||+...++.+.-||.
T Consensus 188 ~~S~r~~~pFv~vnc~ai~~~l~eseLFG~~k--------gaftga~~~~~G~~e~A~gGTLfLdeI~~l~~~~Q~kLLr 259 (457)
T PRK11361 188 YNSRRAKGPFIKVNCAALPESLLESELFGHEK--------GAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLR 259 (457)
T ss_pred HHCCCCCCCEEEEECCCCCHHHHHHHHHCCCC--------CCCCCCCCCCCCCHHHCCCCCEECCCHHHHHHHHHHHHHH
T ss_conf 83798899838764787985778999718766--------7878853146986133599826314664523999999999
Q ss_pred HHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHH-HHHCCHHHHCCCCEEEE-CCCC--CH
Q ss_conf 87775021779977612542999942421455330368988211148899999-87288788177682896-2889--99
Q gi|254780163|r 599 IMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEAL-RNFLSPEFLNRLDSIIP-FFPL--SS 674 (798)
Q Consensus 599 ild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l-~~~f~peflnRid~ii~-F~~l--~~ 674 (798)
+|++|.++--.|.+.--.|+=||.+||.-- .+.+ +..|+++|+-|+..+-+ .-|| -.
T Consensus 260 ~L~~~~~~~~g~~~~~~~dvRiIaaT~~~L-------------------~~~v~~g~Fr~DLyyrL~~~~i~lPpLReR~ 320 (457)
T PRK11361 260 ILQEREFERIGGHQTIKVDIRIIAATNRDL-------------------QAMVKEGTFREDLFYRLNVIHLILPPLRDRR 320 (457)
T ss_pred HHHCCCEEECCCCCEEEECCEEEECCCCCH-------------------HHHHHCCCCHHHHHHHHCEEEEECCCHHHCH
T ss_conf 986492785699713665348996578785-------------------9998758323889953022125173854587
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999999999999998669889998899999997189810153267999998623
Q gi|254780163|r 675 DIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVK 732 (798)
Q Consensus 675 ~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~ 732 (798)
+++..+++-++.+...+... -...+++++++.|....+-- --|.|+.+|++-+.
T Consensus 321 eDI~~L~~~fl~~~~~~~~~--~~~~~s~~a~~~L~~y~WPG--NvREL~n~ierav~ 374 (457)
T PRK11361 321 EDISLLANHFLQKFSSENQR--DIIDIDPMAMSLLTAWSWPG--NIRELSNVIERAVV 374 (457)
T ss_pred HHHHHHHHHHHHHHHHHCCC--CCCCCCHHHHHHHHCCCCCC--HHHHHHHHHHHHHH
T ss_conf 54999999999999997499--98988999999995699997--99999999999998
No 32
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.6e-14 Score=123.49 Aligned_cols=268 Identities=23% Similarity=0.386 Sum_probs=150.1
Q ss_pred HCCHHHHHHHCHHHHHHHHHHHH----HHHHC--CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHH
Q ss_conf 00002466534589999999998----77520--4456578740688614320038899999873047733772068861
Q gi|254780163|r 471 LEKNLGTVVYGQEEAIKKLSSSI----KIARA--GLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYM 544 (798)
Q Consensus 471 l~~~l~~~v~GQ~~ai~~v~~~i----~~~~~--gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~ 544 (798)
+-..|.+.||||++|-.+|+-|+ +|.+. -|++.--|- ..|..|||||||||.|+.||.-.+-+||.+.-+-|+
T Consensus 9 IV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PK-NILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfT 87 (444)
T COG1220 9 IVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPK-NILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFT 87 (444)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCC-CEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEEEE
T ss_conf 9999876740717778899999998999975478776225755-358888888768899999999848983788764213
Q ss_pred CCCCCCHHCCCCCHHCCCCCCCC---CCH------------HHHHC--------------CCE--EEEECCHHHCCHHHH
Q ss_conf 24653011047800025644431---003------------55515--------------851--777404455028999
Q gi|254780163|r 545 ERHAVSRLIGAPPGYVGFGQGGI---LAD------------SVDQN--------------PYS--VVLLDEIEKSHPDVL 593 (798)
Q Consensus 545 e~~~vs~LiGappGYvG~~egg~---Lte------------~vr~~--------------P~s--Vvl~DEiEKAh~~v~ 593 (798)
|- ||||-|-... |++ .|+.+ |-+ -.=+++=+.+.+...
T Consensus 88 EV-----------GYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r 156 (444)
T COG1220 88 EV-----------GYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATR 156 (444)
T ss_pred EC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
T ss_conf 40-----------3256458999999999999999999999999999999999999986698755466673000026799
Q ss_pred HHHHHHHHHHHCCCCCCCEECCCCE----EEEEECCCCHHHHHH------CCCCCCCCCCH-------------------
Q ss_conf 9999987775021779977612542----999942421455330------36898821114-------------------
Q gi|254780163|r 594 NILLQIMDYGILTDQSGKKISFRNV----ILIMTTNAGALEMSK------ARIGFGSSRND------------------- 644 (798)
Q Consensus 594 ~~llqild~G~ltd~~Gr~vdf~n~----iii~TsN~G~~~~~~------~~~g~~~~~~~------------------- 644 (798)
.-|-+-|.+|.|-|.. -.++...+ +=||+- -|..++.. +.++-+.....
T Consensus 157 ~~~rkkLr~GeLdd~e-Ieiev~~~~~~~~~i~~~-pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KL 234 (444)
T COG1220 157 EKFRKKLREGELDDKE-IEIEVADKGPPGFEIMGP-PGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKL 234 (444)
T ss_pred HHHHHHHHCCCCCCCE-EEEEEECCCCCCCCCCCC-CCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHH
T ss_conf 9999999758877617-999972267875346899-85789999999999864688730366569999998777788762
Q ss_pred ----HHHHHHH---------------------------------H-----------------------------------
Q ss_conf ----8899999---------------------------------8-----------------------------------
Q gi|254780163|r 645 ----DADKEAL---------------------------------R----------------------------------- 652 (798)
Q Consensus 645 ----~~~~~~l---------------------------------~----------------------------------- 652 (798)
+...+++ +
T Consensus 235 id~e~i~~eAi~~aE~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~s 314 (444)
T COG1220 235 IDQEEIKQEAIDAAEQNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVA 314 (444)
T ss_pred CCHHHHHHHHHHHHHHCCEEEEEHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCEECC
T ss_conf 69999999999998856908973466787437889988664320102103105754431544401443788714820037
Q ss_pred --HHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHH----HHHHHHHCCCEEEECHHHHHHHHHCCCC-----CCCCCH
Q ss_conf --72887881776828962889999999999999999----9999986698899988999999971898-----101532
Q gi|254780163|r 653 --NFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMK----LELQLQEKGISFHFSEEVINWLVSHGYD-----VKMGAR 721 (798)
Q Consensus 653 --~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~----l~~~l~~~~i~l~~~~~~~~~l~~~~~~-----~~~GAR 721 (798)
.-+-||+-+|+.--|-..+|+.+++.+|+.--=.. ....+.-.|+.|.|++++++.|++-.|. ...|||
T Consensus 315 KPSDLiPELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGAR 394 (444)
T COG1220 315 KPSDLIPELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGAR 394 (444)
T ss_pred CHHHCCHHHCCCCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 81321766627773488704489989999963760789999999973158348853799999999999855430001178
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC
Q ss_conf 679999986235999999629676888489999607
Q gi|254780163|r 722 PLERIIKEHVKVPLADEILFGKLKKGGGVVKVSLNP 757 (798)
Q Consensus 722 ~l~r~i~~~i~~~la~~il~~~~~~g~~~~~v~~~~ 757 (798)
.|.-++++.+++ |-|..-..++..+.|+-.+
T Consensus 395 RLhTvlErlLed-----iSFeA~d~~g~~v~Id~~y 425 (444)
T COG1220 395 RLHTVLERLLED-----ISFEAPDMSGQKVTIDAEY 425 (444)
T ss_pred HHHHHHHHHHHH-----HCCCCCCCCCCEEEECHHH
T ss_conf 899999999987-----0705877899758975899
No 33
>KOG2004 consensus
Probab=99.65 E-value=2.5e-14 Score=122.09 Aligned_cols=297 Identities=23% Similarity=0.389 Sum_probs=209.7
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHCCHHHHHHH
Q ss_conf 98654201555646798899865333321144322113657899986631024531011100112334210000246653
Q gi|254780163|r 401 QLSVRHFTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVY 480 (798)
Q Consensus 401 ~ls~ryi~~r~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~gip~~~~~~~~~~~l~~l~~~l~~~v~ 480 (798)
.+-.|-.+ -.+||-+.+++|+--.+ ++.+. ..-.+=+|-...-.|-|-+|-.+.+.+ +-.|......|.+--+
T Consensus 342 ~~~er~~~-~~~P~~v~kv~~eEl~k--L~~le---~~~sEfnvtrNYLdwlt~LPWgk~S~E-n~dl~~Ak~iLdeDHY 414 (906)
T KOG2004 342 KFRERIKS-LKMPDHVLKVIDEELTK--LKLLE---PSSSEFNVTRNYLDWLTSLPWGKSSTE-NLDLARAKEILDEDHY 414 (906)
T ss_pred HHHHHHHH-CCCCHHHHHHHHHHHHH--HHCCC---CCCCCHHHHHHHHHHHHHCCCCCCCHH-HHHHHHHHHHHCCCCC
T ss_conf 99988621-12769999999999998--74257---556404389899999984887878735-3037989876346530
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCC-CCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCCCHH
Q ss_conf 45899999999987752044565-78740688614320038899999873047733772068861246530110478000
Q gi|254780163|r 481 GQEEAIKKLSSSIKIARAGLSDP-NKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGY 559 (798)
Q Consensus 481 GQ~~ai~~v~~~i~~~~~gl~~~-~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGappGY 559 (798)
|-++.-+.|.+-|-..+ |+.. .-| .+.|+||+|||||-.||..|..++..+.||-..-..+ ++-.-|----|
T Consensus 415 gm~dVKeRILEfiAV~k--Lrgs~qGk--IlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tD---vAeIkGHRRTY 487 (906)
T KOG2004 415 GMEDVKERILEFIAVGK--LRGSVQGK--ILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTD---VAEIKGHRRTY 487 (906)
T ss_pred CHHHHHHHHHHHHHHHH--HCCCCCCC--EEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCCC---HHHHCCCCEEE
T ss_conf 16889999999999875--14667883--7998689987732189999998487469985366342---77642542110
Q ss_pred CCCCCCCCCCHHHHH--CCCEEEEECCHHHCC----HHHHHHHHHHHHH---HHCCCCC-CCEECCCCEEEEEECCCCHH
Q ss_conf 256444310035551--585177740445502----8999999998777---5021779-97761254299994242145
Q gi|254780163|r 560 VGFGQGGILADSVDQ--NPYSVVLLDEIEKSH----PDVLNILLQIMDY---GILTDQS-GKKISFRNVILIMTTNAGAL 629 (798)
Q Consensus 560 vG~~egg~Lte~vr~--~P~sVvl~DEiEKAh----~~v~~~llqild~---G~ltd~~-Gr~vdf~n~iii~TsN~G~~ 629 (798)
||.= .|.+.+++++ .-+-|+|+|||+|-- -|=-..||.+||- ....|.. .-.+|.+..++|+|.|.=
T Consensus 488 VGAM-PGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~i-- 564 (906)
T KOG2004 488 VGAM-PGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVI-- 564 (906)
T ss_pred ECCC-CHHHHHHHHHHCCCCCEEEEEHHHHHCCCCCCCHHHHHHHHCCHHHCCCHHHHCCCCCCCHHHEEEEEECCCC--
T ss_conf 0148-8489999986177886588532234178877986899987439653553454202664211106889853644--
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC---EEEECHHHH
Q ss_conf 53303689882111488999998728878817768289628899999999999999999999986698---899988999
Q gi|254780163|r 630 EMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGI---SFHFSEEVI 706 (798)
Q Consensus 630 ~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i---~l~~~~~~~ 706 (798)
...+|.++.|+ ++|-.--...++-.+|+..+|-. +.+...|+ ++.++++++
T Consensus 565 -----------------------dtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLip--~a~~~~gl~~e~v~is~~al 618 (906)
T KOG2004 565 -----------------------DTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLIP--QALKDCGLKPEQVKISDDAL 618 (906)
T ss_pred -----------------------CCCCHHHHHHH-HEEECCCCCHHHHHHHHHHHHHH--HHHHHCCCCHHHCCCCHHHH
T ss_conf -----------------------56985664122-32203672279899999984125--78987499878658629999
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999971898101532679999986235999999629
Q gi|254780163|r 707 NWLVSHGYDVKMGARPLERIIKEHVKVPLADEILFG 742 (798)
Q Consensus 707 ~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~ 742 (798)
.-|.+ -|-.+.|-|+|+|-|++-. ...|-.+..+
T Consensus 619 ~~lI~-~YcrEaGVRnLqk~iekI~-Rk~Al~vv~~ 652 (906)
T KOG2004 619 LALIE-RYCREAGVRNLQKQIEKIC-RKVALKVVEG 652 (906)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_conf 99999-9988876778999999999-9999999986
No 34
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.62 E-value=1.4e-12 Score=109.57 Aligned_cols=349 Identities=17% Similarity=0.193 Sum_probs=220.6
Q ss_pred CEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEE--ECCCCHHHHHH
Q ss_conf 8399973616630155444344777888876630266038873048999998520111432001443--06878689999
Q gi|254780163|r 297 NAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKID--VSEPSIEDAIE 374 (798)
Q Consensus 297 ~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~--v~ep~~~~~~~ 374 (798)
--||.||+= -+...+|+-.|.+-..+|..|++.++-.+.+... .|..|- +.=|.. +-+.
T Consensus 6 ~~ILIVDDd-------------~~~~~~l~~~L~~~G~~v~~a~~~~~al~~l~~~-----~~DlvllD~~mp~~-~Gl~ 66 (441)
T PRK10365 6 IDILVVDDD-------------ISHCTILQALLRGWGYNVALANSGRQALEQVREQ-----VFDLVLCDVRMAEM-DGIA 66 (441)
T ss_pred CEEEEECCC-------------HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC-----CCCEEEECCCCCCC-CHHH
T ss_conf 859998398-------------9999999999997799899989999999998648-----99999988999999-8999
Q ss_pred HHHHHHHHHHHHCCCEECC----HHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 9986127665410351211----178999998-65420155564679889986533332114432211365789998663
Q gi|254780163|r 375 IVKGIKPYFEEHHQLRYSK----EAIRAAVQL-SVRHFTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIA 449 (798)
Q Consensus 375 iL~~~~~~ye~~h~v~~~~----~al~~av~l-s~ryi~~r~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~ 449 (798)
+|+.++..+-.-.=|-+|- +....|+++ +.-|+.-=+-|++-...++.|.+..+.. .
T Consensus 67 lL~~l~~~~p~~pvIviT~~~~~~~av~A~k~GA~Dyl~KP~~~~~L~~~i~~al~~~~~~--------------~---- 128 (441)
T PRK10365 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI--------------D---- 128 (441)
T ss_pred HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHH--------------H----
T ss_conf 9999984298982899969999899999998285123407888999999999999999876--------------5----
Q ss_pred HCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH
Q ss_conf 10245310111001123342100002466534589999999998775204456578740688614320038899999873
Q gi|254780163|r 450 SMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAF 529 (798)
Q Consensus 450 ~~~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~ 529 (798)
. ..+.. ......+||+..|+..+.+.+.+. .+.+.| .|+.|.||+||.-+|+++-.
T Consensus 129 ~---~~~~~--------------~~~~~~liG~S~am~~v~~~i~~~----A~s~~p---VLI~GE~GTGK~~~Ar~IH~ 184 (441)
T PRK10365 129 A---ETPAV--------------SASQFGMVGKSPAMQHLLSEIALV----APSEAT---VLIHGDSGTGKELVARAIHA 184 (441)
T ss_pred H---CCHHC--------------CCCCCCCEECCHHHHHHHHHHHHH----HCCCCC---EEEECCCCHHHHHHHHHHHH
T ss_conf 2---00001--------------222578666899999999999998----488994---89989998109999999996
Q ss_pred HC---CCCEEEEEHHHHHCCCCCCHHCCCCCHH-CCCC--CCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHH
Q ss_conf 04---7733772068861246530110478000-2564--4431003555158517774044550289999999987775
Q gi|254780163|r 530 AL---GVQLLRFDMSEYMERHAVSRLIGAPPGY-VGFG--QGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYG 603 (798)
Q Consensus 530 ~~---~~~lir~dmsey~e~~~vs~LiGappGY-vG~~--egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G 603 (798)
.+ +.+|+.+||+...+..--|.|.|.-.|. -|-+ .-|.+ .....+.++||||+.-.++++.-||.++++|
T Consensus 185 ~S~r~~~pfv~vnC~~l~~~l~eseLFG~~~gaftga~~~~~g~~----~~A~gGTLfLdeI~~l~~~~Q~kLl~~l~~~ 260 (441)
T PRK10365 185 SSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRF----VEADGGTLFLDEIGDISPMMQVRLLRAIQER 260 (441)
T ss_pred CCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCE----EECCCCEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 578778980798789898455589861775568789653468987----7889982550231529999999999877752
Q ss_pred HCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEE-EECCCCC--HHHHHHH
Q ss_conf 021779977612542999942421455330368988211148899999872887881776828-9628899--9999999
Q gi|254780163|r 604 ILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSI-IPFFPLS--SDIIRQV 680 (798)
Q Consensus 604 ~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~i-i~F~~l~--~~~~~~i 680 (798)
.++--.|...--.|+=||.+||.--. ...-...|+++++-|+..+ |..-||. .+++..+
T Consensus 261 ~~~~~g~~~~~~~d~RiIaat~~~l~------------------~~v~~g~Fr~dLy~rL~~~~i~lPpLReR~eDI~~L 322 (441)
T PRK10365 261 EVQRVGSNQTISVDVRLIAATHRDLA------------------AEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLL 322 (441)
T ss_pred HHCCCCCCCEEECCCEEEECCCCCHH------------------HHHHCCCCHHHHHHHHCCHHCCCCCCCCCCCHHHHH
T ss_conf 10005887344136379983788999------------------998819825899988601113782600062009999
Q ss_pred HHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999999998669889998899999997189810153267999998623
Q gi|254780163|r 681 VHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVK 732 (798)
Q Consensus 681 ~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~ 732 (798)
++.++.++..+... -...+++++.+.|....+-- --|.|+.+|++-+.
T Consensus 323 ~~~fl~~~~~~~~~--~~~~~s~~a~~~L~~y~WPG--NvREL~n~iera~~ 370 (441)
T PRK10365 323 AGHFLQRFAERNRK--AVKGFTPQAMDLLIHYDWPG--NIRELENAVERAVV 370 (441)
T ss_pred HHHHHHHHHHHCCC--CCCCCCHHHHHHHHCCCCCC--HHHHHHHHHHHHHH
T ss_conf 99999999998499--98888999999997099998--99999999999999
No 35
>pfam10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein. This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA, pfam00004) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit and thereby providing enough binding energy to stabilize the functional assembly. The domain is associated with two Clp_N, pfam02861, at the N-terminus as well as AAA, pfam00004 and AAA_2, pfam07724.
Probab=99.62 E-value=8.9e-15 Score=125.36 Aligned_cols=85 Identities=40% Similarity=0.762 Sum_probs=79.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 99999999999999999999986698899988999999971898101532679999986235999999629676888489
Q gi|254780163|r 672 LSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKVPLADEILFGKLKKGGGVV 751 (798)
Q Consensus 672 l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~g~~~~ 751 (798)
|+.+++.+|++++|.++.+|+..++|.+.+++++++||+++||+++||||||+|+|+++|++|||+.+|++.+.+|++ +
T Consensus 1 L~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~i~~~~~~~~~GAR~l~r~I~~~i~~~la~~il~~~~~~~~~-i 79 (89)
T pfam10431 1 LSKEELRQIVDLQLKRLQKRLAERGITLELTDAAKDWLAEKGYDPEYGARPLRRAIQREIEDPLAEEILSGELKEGDT-V 79 (89)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCE-E
T ss_conf 988999999999999999999978907998689999999835675679478999999999999999998498999799-9
Q ss_pred EEEEEC
Q ss_conf 999607
Q gi|254780163|r 752 KVSLNP 757 (798)
Q Consensus 752 ~v~~~~ 757 (798)
.|++..
T Consensus 80 ~i~~~~ 85 (89)
T pfam10431 80 RVDVDD 85 (89)
T ss_pred EEEECC
T ss_conf 997158
No 36
>CHL00181 cbbX CbbX; Provisional
Probab=99.61 E-value=7.1e-13 Score=111.66 Aligned_cols=186 Identities=20% Similarity=0.332 Sum_probs=140.0
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHH
Q ss_conf 74896676411668999999998548988345201445540467530634312378999999987203898399973616
Q gi|254780163|r 227 NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIH 306 (798)
Q Consensus 227 n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih 306 (798)
|-++.|+||+|||+++.-+|+-...-. .|..-.+++.+-+.|+++ |.|+-+.+.+.+++.+. | =||||||.|
T Consensus 61 h~vF~GnPGTGKTTVARl~a~il~~lG---~L~~g~vve~~r~dLvg~--yvG~Ta~kt~~~i~~a~--G-GVLfIDEAY 132 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYRLG---YIKKGHLITVTRDDLVGQ--YIGHTAPKTKEVLKKAM--G-GVLFIDEAY 132 (287)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC---CCCCCEEEEECHHHHCCC--CCCCCHHHHHHHHHHCC--C-CEEEEECHH
T ss_conf 388878998679999999999999869---955895899535884163--53521699999999645--9-879982446
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHCCHHHHHHCEE-EEECCCCHHHHHHHHHHHHHHH
Q ss_conf 630155444344777888876630--2660388730489999985201114320014-4306878689999998612766
Q gi|254780163|r 307 TLVGAGSASGISVDASNLLKPALS--SGAVRCIGSTTYSEYRQFFEKDKALVRRFQK-IDVSEPSIEDAIEIVKGIKPYF 383 (798)
Q Consensus 307 ~ligag~~~g~~~d~an~lkP~L~--rg~~~~IgatT~~ey~~~~e~d~al~rrF~~-i~v~ep~~~~~~~iL~~~~~~y 383 (798)
+|...++..+-+..|-+.|-.++. |+++-||.|--++|-.++++.+|.|.+||.. +..+.-|.++-.+|++..
T Consensus 133 ~L~~~~~~~dfg~eaidtLl~~me~~~~~lvvI~AGY~~eM~~fl~~NpGL~sRf~~~i~F~dYt~~EL~~I~~~~---- 208 (287)
T CHL00181 133 YLYKPDNERDYGAEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRVANHVDFPDYTPEELLQIAKMM---- 208 (287)
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCHHHHCCCEEECCCCCHHHHHHHHHHH----
T ss_conf 5357889998379999999999870799889998467899999998590478768872377985999999999999----
Q ss_pred HHHCCCEECCHHHHHHHHHHHHHCCCCCC-HHHHHH-HHHHHH
Q ss_conf 54103512111789999986542015556-467988-998653
Q gi|254780163|r 384 EEHHQLRYSKEAIRAAVQLSVRHFTSRKL-PDKAID-VIDEAG 424 (798)
Q Consensus 384 e~~h~v~~~~~al~~av~ls~ryi~~r~l-PdkAid-llDea~ 424 (798)
-..++..++++|.....+.-.+......| -..++. +++.+.
T Consensus 209 ~~~~~~~l~~~a~~~l~~~~~~~~~~~~FGNaR~vrnl~e~a~ 251 (287)
T CHL00181 209 LEEQQYQLTPEAEKVLLDYIKRRMEQPLFANARSVRNAIDRAR 251 (287)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 9986982587999999999998508999874899999999999
No 37
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.60 E-value=3.7e-13 Score=113.67 Aligned_cols=217 Identities=23% Similarity=0.340 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHHHHH-------------CCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHH
Q ss_conf 122217899999999862-------------2677874896676411668999999998548988345201445540467
Q gi|254780163|r 204 DILVGRHEEINRTIQILC-------------RRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGN 270 (798)
Q Consensus 204 DPVIGRd~EI~riiqIL~-------------RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~ 270 (798)
+-|-|=|+.++.+-+..- =+--..++|.|+||.|||-++..+|.. .+..++.++.+.
T Consensus 132 ~dIGGl~~~k~el~E~velPl~~pe~f~~~Gi~pPkGvLLyGPPGtGKTllAkAvA~e----------~~~~fi~v~~s~ 201 (390)
T PRK03992 132 EDIGGLDEQIREVREAVELPLKNPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE----------TNATFIRVVGSE 201 (390)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH----------HCCCEEEEEHHH
T ss_conf 6614989999999999999865989999769999972786898999789999999987----------488879966799
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCC--HHHHHHHHH-------CCCCEEEEEECC
Q ss_conf 53063431237899999998720389839997361663015544434477--788887663-------026603887304
Q gi|254780163|r 271 LIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVD--ASNLLKPAL-------SSGAVRCIGSTT 341 (798)
Q Consensus 271 l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d--~an~lkP~L-------~rg~~~~IgatT 341 (798)
++. +|-||-|..++.+++.+++..+.|+|||||..|-+.-..++++.| +.+++-..| .++.+.+||||.
T Consensus 202 l~s--k~vGesek~vr~lF~~Ar~~aP~IiFiDEiDai~~~R~~~~~~g~~ev~r~l~qLL~emDG~~~~~~V~VIaATN 279 (390)
T PRK03992 202 LVQ--KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATN 279 (390)
T ss_pred HHH--CCCCHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
T ss_conf 752--454179999999999999709908971432566335677888620889999999999744877778827996069
Q ss_pred HHHHHHHHHCCHHHHH--HCE-EEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCH-HHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 8999998520111432--001-4430687868999999861276654103512111-78999998654201555646798
Q gi|254780163|r 342 YSEYRQFFEKDKALVR--RFQ-KIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKE-AIRAAVQLSVRHFTSRKLPDKAI 417 (798)
Q Consensus 342 ~~ey~~~~e~d~al~r--rF~-~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~-al~~av~ls~ryi~~r~lPdkAi 417 (798)
--+ .-|+||-| ||. .|.|+-|+.++-..||+-... ++...++ -+...++.+.-|- +.-|
T Consensus 280 rpd-----~LDpAllRpGRFDr~I~iplPd~~~R~~Ilki~~~------~~~l~~dvdl~~lA~~T~G~S------GADI 342 (390)
T PRK03992 280 RPD-----ILDPALLRPGRFDRIIEVPLPDEEGRLEILKIHTR------KMNLADDVDLEELAELTEGAS------GADL 342 (390)
T ss_pred CCH-----HCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHC------CCCCCCCCCHHHHHHHCCCCC------HHHH
T ss_conf 810-----05977754776523887089499999999999847------999998889999997687998------9999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 89986533332114432211365789998663102
Q gi|254780163|r 418 DVIDEAGASQILQPLSKRRKFITEKDIKKTIASMN 452 (798)
Q Consensus 418 dllDea~a~~~~~~~~~~~~~~~~~~i~~~~~~~~ 452 (798)
. ..|-.+.+.+..+.+..|+.+|....+.+..
T Consensus 343 ~---~lc~EA~m~Air~~r~~i~~~Df~~Ai~kv~ 374 (390)
T PRK03992 343 K---AICTEAGMFAIRDDRTEVTMEDFLKAIEKVM 374 (390)
T ss_pred H---HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 9---9999999999985898608999999999996
No 38
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.60 E-value=1.9e-12 Score=108.61 Aligned_cols=210 Identities=22% Similarity=0.289 Sum_probs=136.9
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHH
Q ss_conf 74896676411668999999998548988345201445540467530634312378999999987203898399973616
Q gi|254780163|r 227 NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIH 306 (798)
Q Consensus 227 n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih 306 (798)
.++|+|+||.|||-++..+|.. -+..++.+|++.+.. +|.||-|.+++.++..+++..+.|||||||-
T Consensus 261 GvLL~GpPG~GKtl~AKAvA~e----------~~~p~l~l~~~~l~~--~~vGesE~~~r~~f~~A~~~aP~ilfiDEid 328 (491)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIANE----------WNLPLLRLDVGKLFG--GIVGESESRMRQMIQLAETISPCILWIDEID 328 (491)
T ss_pred EEEEECCCCCCHHHHHHHHHHH----------HCCCEEEEEHHHHHH--HHCCHHHHHHHHHHHHHHHHCCEEEEEEHHH
T ss_conf 7999799998789999999866----------389469966799756--0067049999999999986198589974654
Q ss_pred HHHCCCCCCCCC-CC--HHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHCCHHHHH--HCE-EEEECCCCHHHHHHHHHH
Q ss_conf 630155444344-77--7888876630-2-66038873048999998520111432--001-443068786899999986
Q gi|254780163|r 307 TLVGAGSASGIS-VD--ASNLLKPALS-S-GAVRCIGSTTYSEYRQFFEKDKALVR--RFQ-KIDVSEPSIEDAIEIVKG 378 (798)
Q Consensus 307 ~ligag~~~g~~-~d--~an~lkP~L~-r-g~~~~IgatT~~ey~~~~e~d~al~r--rF~-~i~v~ep~~~~~~~iL~~ 378 (798)
..++.+.++|.+ .. +-+-|--.|. + ..+-+||+|.- .-.-|++|.| ||. .+.|+-|+.++-..|++-
T Consensus 329 k~~~~~~~~~d~g~s~rv~~~~Lt~m~e~~~~VfViattN~-----~~~L~pellR~GRFD~~~~v~lP~~~~R~~I~~i 403 (491)
T CHL00195 329 KAFSGLDSKGDSGTSNRVLATFITWLSEKKSPVFVVATANN-----IDSLPLELLRKGRFDEIFFLDLPNLEERELIFKI 403 (491)
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCC-----CCCCCHHHCCCCCCCEEEECCCCCHHHHHHHHHH
T ss_conf 54258888888723289999999986468997699995899-----7558987708987770476489598999999999
Q ss_pred HHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHH
Q ss_conf 12766541035121117899999865420155564679889986533332114432211365789998663102453101
Q gi|254780163|r 379 IKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIASMNRSIHTT 458 (798)
Q Consensus 379 ~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~gip~~ 458 (798)
.-.++ ......+--+...++.+.-|-- .-| ..+|-.+...+..+. ..++.+|+...+.+ -+|++
T Consensus 404 hl~~~---~~~~~~~~d~~~la~~t~gfsG------AeI---e~~v~~A~~~A~~~~-r~~~~~dl~~a~~~---~~Pls 467 (491)
T CHL00195 404 HLKRF---RPNSWQNYDIEILSQLTNKFSG------AEI---EQSIIEAMHHAFSEK-REFTTEDICLALKQ---LIPLA 467 (491)
T ss_pred HHHCC---CCCCCCCCCHHHHHHHCCCCCH------HHH---HHHHHHHHHHHHHCC-CCCCHHHHHHHHHH---CCCHH
T ss_conf 98544---7887554699999976859888------999---999999999998758-86658999999981---78813
Q ss_pred HHHCCHHHHHH
Q ss_conf 11001123342
Q gi|254780163|r 459 SFSRDDDSVLS 469 (798)
Q Consensus 459 ~~~~~~~~~l~ 469 (798)
....+.-+.+.
T Consensus 468 ~t~~e~i~~lr 478 (491)
T CHL00195 468 QTDKEQIEALQ 478 (491)
T ss_pred HCCHHHHHHHH
T ss_conf 32899999999
No 39
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=99.58 E-value=1.2e-13 Score=117.13 Aligned_cols=198 Identities=21% Similarity=0.272 Sum_probs=121.7
Q ss_pred HHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCC
Q ss_conf 46653458999999999877520445657874068861432003889999987304773377206886124653011047
Q gi|254780163|r 476 GTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGA 555 (798)
Q Consensus 476 ~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGa 555 (798)
-..+|||++.+..+..+|..+ ...+.++.++||.||+|||||-+|+.+|..++.++....-....
T Consensus 23 l~e~vGQehl~~~l~~~i~a~----~~~~~~l~h~lf~GPPG~GKTTlAriiAk~~~~~~~~~s~~~i~----------- 87 (234)
T pfam05496 23 LDEYIGQEKVKENLKIFIEAA----KKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE----------- 87 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHHH----HHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCHHHH-----------
T ss_conf 666069499999999999988----74277766278878999988899999998408753761426664-----------
Q ss_pred CCHHCCCCCCCCCCHHH-HHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCC-----CCCCCEECCCCEEEEEECCCCHH
Q ss_conf 80002564443100355-5158517774044550289999999987775021-----77997761254299994242145
Q gi|254780163|r 556 PPGYVGFGQGGILADSV-DQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILT-----DQSGKKISFRNVILIMTTNAGAL 629 (798)
Q Consensus 556 ppGYvG~~egg~Lte~v-r~~P~sVvl~DEiEKAh~~v~~~llqild~G~lt-----d~~Gr~vdf~n~iii~TsN~G~~ 629 (798)
.-+-+...+ ..+...|++.|||+--.+..+++||..+++|++- +..-+++.+.+--+++ +||.
T Consensus 88 --------~~~di~~~l~~~~~~~ILFIDEIHr~nK~qqd~Llp~vE~g~i~i~ig~~~~A~~~~~e~P~FtL---IgAT 156 (234)
T pfam05496 88 --------KPGDLAAILTNLEPGDVLFIDEIHRLNRAVEEILYPAMEDFRLDIVIGKGPSARSIRLDLPPFTL---VGAT 156 (234)
T ss_pred --------HHHHHHHHHHHCCCCCEEEEECHHHCCHHHHHHCCCCCCCCEEEEEECCCCCCEEEECCCCCEEE---EEEC
T ss_conf --------38999999984589988999665435876887445533461699996367663246526897599---8521
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHH
Q ss_conf 53303689882111488999998728878817768289628899999999999999999999986698899988999999
Q gi|254780163|r 630 EMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWL 709 (798)
Q Consensus 630 ~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l 709 (798)
.+ ...+++.|+.|+.-+.-|+||+.+++.+|+..-+.. .+ +.++++++++|
T Consensus 157 ----------Te----------~~~l~~pl~sR~~i~~~l~~l~~edl~~il~r~~~~-------l~--i~i~~eal~~I 207 (234)
T pfam05496 157 ----------TR----------AGLLTSPLRDRFGIVLRLEFYSVEELEEIVKRSARI-------LG--VEIDEEGAAEI 207 (234)
T ss_pred ----------CC----------CCCCCHHHHHHHHHEEECCCCCHHHHHHHHHHHHHH-------CC--CCCCHHHHHHH
T ss_conf ----------56----------664777799762112442468999999999999998-------39--99599999999
Q ss_pred HHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9718981015326799999862
Q gi|254780163|r 710 VSHGYDVKMGARPLERIIKEHV 731 (798)
Q Consensus 710 ~~~~~~~~~GAR~l~r~i~~~i 731 (798)
+..+- -.||..-+.+++-.
T Consensus 208 A~~s~---Gd~R~ALnlLe~v~ 226 (234)
T pfam05496 208 ARRSR---GTPRIANRLLRRVR 226 (234)
T ss_pred HHHCC---CCHHHHHHHHHHHH
T ss_conf 99779---98999989999999
No 40
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.57 E-value=5.4e-15 Score=126.93 Aligned_cols=112 Identities=29% Similarity=0.479 Sum_probs=87.5
Q ss_pred EEEECCCCHHHHHHHHHHHHHC-CCCEEEEEHHHHHCCCCCCHHCCCC---CHHCCCCCCCCCCHHHHHCCCEEEEECCH
Q ss_conf 8861432003889999987304-7733772068861246530110478---00025644431003555158517774044
Q gi|254780163|r 510 YVFSGPTGVGKTEISKQLAFAL-GVQLLRFDMSEYMERHAVSRLIGAP---PGYVGFGQGGILADSVDQNPYSVVLLDEI 585 (798)
Q Consensus 510 flf~GptGvGKTelak~la~~~-~~~lir~dmsey~e~~~vs~LiGap---pGYvG~~egg~Lte~vr~~P~sVvl~DEi 585 (798)
.||.||+|+|||.+|+.+|..+ ..++.++.+++.+++ +.|+|.. +|...|. .|.|+.+++.. .|++||||
T Consensus 2 vll~Gp~G~GKT~la~~la~~l~~~~~~~i~~~~~~~~---~dl~G~~~~~~~~~~~~-~g~l~~a~~~g--~vl~lDEi 75 (139)
T pfam07728 2 VLLVGPPGTGKSELAERLAAALSNRPVFYVQLTRDTTE---EDLKGRRNIANGTTSWV-DGPLVRAAREG--EIAVLDEI 75 (139)
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCH---HHCCCCEECCCCCEEEE-CCHHHCCCCCC--CEEEECCH
T ss_conf 89998997569999999999807983111214655652---22057342379935781-55141010128--68996343
Q ss_pred HHCCHHHHHHHHHHHHHHHCCC-CCCCEECC------CCEEEEEECCCC
Q ss_conf 5502899999999877750217-79977612------542999942421
Q gi|254780163|r 586 EKSHPDVLNILLQIMDYGILTD-QSGKKISF------RNVILIMTTNAG 627 (798)
Q Consensus 586 EKAh~~v~~~llqild~G~ltd-~~Gr~vdf------~n~iii~TsN~G 627 (798)
++|||+|++.|+++||+++++- ..|+.+.. .|..+|.|+|-+
T Consensus 76 n~a~~~v~~~L~~~le~~~~~~~~~~~~~~~~~~~~~~~f~viaT~N~~ 124 (139)
T pfam07728 76 NRANPDVLNSLLSLLDERRLLLPEGGELVKVAPDDFAKRFRLIATMNPL 124 (139)
T ss_pred HHCCHHHHHHHHHHHCCCEEEECCCCEEECCCCCCCCCCEEEEEEECCC
T ss_conf 4489999999999974896983689727336666789996999975896
No 41
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=99.54 E-value=1.9e-13 Score=115.77 Aligned_cols=187 Identities=22% Similarity=0.314 Sum_probs=120.0
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHC--CCCC----CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHH
Q ss_conf 548611222178999999998622--6778----7489667641166899999999854898834520144554046753
Q gi|254780163|r 199 KKGKVDILVGRHEEINRTIQILCR--RSKN----NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLI 272 (798)
Q Consensus 199 reGKLDPVIGRd~EI~riiqIL~R--R~KN----n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ 272 (798)
|=-.+|-+||-+.=+. ...++.+ +.+| +.++-|+||+|||+++.-+|...- ..+..++...+
T Consensus 19 RP~~l~e~vGQehl~~-~l~~~i~a~~~~~~~l~h~lf~GPPG~GKTTlAriiAk~~~----------~~~~~~s~~~i- 86 (234)
T pfam05496 19 RPRRLDEYIGQEKVKE-NLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG----------VNIRITSGPAL- 86 (234)
T ss_pred CCCCHHHCCCHHHHHH-HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHC----------CCEEEECCHHH-
T ss_conf 9897666069499999-99999998874277766278878999988899999998408----------75376142666-
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCE------------------
Q ss_conf 06343123789999999872038983999736166301554443447778888766302660------------------
Q gi|254780163|r 273 AGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAV------------------ 334 (798)
Q Consensus 273 ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~------------------ 334 (798)
.+. .-+..++..+. .+.||||||||.+ +-..-+.|.|++..|.+
T Consensus 87 ~~~-------~di~~~l~~~~--~~~ILFIDEIHr~---------nK~qqd~Llp~vE~g~i~i~ig~~~~A~~~~~e~P 148 (234)
T pfam05496 87 EKP-------GDLAAILTNLE--PGDVLFIDEIHRL---------NRAVEEILYPAMEDFRLDIVIGKGPSARSIRLDLP 148 (234)
T ss_pred HHH-------HHHHHHHHHCC--CCCEEEEECHHHC---------CHHHHHHCCCCCCCCEEEEEECCCCCCEEEECCCC
T ss_conf 438-------99999998458--9988999665435---------87688744553346169999636766324652689
Q ss_pred --EEEEECCHHHHHHHHHCCHHHHHHCEEEE-ECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCC
Q ss_conf --38873048999998520111432001443-068786899999986127665410351211178999998654201555
Q gi|254780163|r 335 --RCIGSTTYSEYRQFFEKDKALVRRFQKID-VSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRK 411 (798)
Q Consensus 335 --~~IgatT~~ey~~~~e~d~al~rrF~~i~-v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~ 411 (798)
..|||||.. . .-.++|-.||..+. .+.-+.++-.+||+... ...++.++++|+...++.|.=
T Consensus 149 ~FtLIgATTe~--~---~l~~pl~sR~~i~~~l~~l~~edl~~il~r~~----~~l~i~i~~eal~~IA~~s~G------ 213 (234)
T pfam05496 149 PFTLVGATTRA--G---LLTSPLRDRFGIVLRLEFYSVEELEEIVKRSA----RILGVEIDEEGAAEIARRSRG------ 213 (234)
T ss_pred CEEEEEECCCC--C---CCCHHHHHHHHHEEECCCCCHHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHCCC------
T ss_conf 75998521566--6---47777997621124424689999999999999----983999599999999997799------
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q ss_conf 6467988998653333211
Q gi|254780163|r 412 LPDKAIDVIDEAGASQILQ 430 (798)
Q Consensus 412 lPdkAidllDea~a~~~~~ 430 (798)
=|..|+.+|+.+.+.+.++
T Consensus 214 d~R~ALnlLe~v~d~a~~~ 232 (234)
T pfam05496 214 TPRIANRLLRRVRDFAQVK 232 (234)
T ss_pred CHHHHHHHHHHHHHHHHHH
T ss_conf 8999989999999999873
No 42
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.54 E-value=1.5e-13 Score=116.48 Aligned_cols=238 Identities=24% Similarity=0.371 Sum_probs=152.4
Q ss_pred HHHHHHCCCCHHHH------HHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEE
Q ss_conf 58877548611222------178999999998622677874896676411668999999998548988345201445540
Q gi|254780163|r 194 LTEKVKKGKVDILV------GRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLD 267 (798)
Q Consensus 194 LTe~AreGKLDPVI------GRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld 267 (798)
|.+.-|-..||-|| |-+.-|+|+++- .+=.+-||-|+||||||+|++-+|+.. +..+..++
T Consensus 14 LA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~---~~l~SmIl~GPPG~GKTTlA~liA~~~----------~~~f~~~s 80 (436)
T COG2256 14 LAERLRPKSLDEVVGQEHLLGEGKPLRRAVEA---GHLHSMILWGPPGTGKTTLARLIAGTT----------NAAFEALS 80 (436)
T ss_pred HHHHHCCCCHHHHCCHHHHHCCCCHHHHHHHC---CCCCEEEEECCCCCCHHHHHHHHHHHH----------CCCEEEEC
T ss_conf 67770977787855718661899438999964---998605777899988889999998761----------77669951
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHCCC-C---CEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 4675306343123789999999872038-9---83999736166301554443447778888766302660388730489
Q gi|254780163|r 268 MGNLIAGTRYRGDFEERIKKIVKEIESY-A---NAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYS 343 (798)
Q Consensus 268 ~~~l~ag~~~rg~fe~r~~~~~~~~~~~-~---~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~IgatT~~ 343 (798)
+..+|- ..++.++++.++. . ..||||||||-+= ++. -| .|.|.+.+|.|..|||||..
T Consensus 81 --Av~~gv-------kdlr~i~e~a~~~~~~gr~tiLflDEIHRfn---K~Q---QD---~lLp~vE~G~iilIGATTEN 142 (436)
T COG2256 81 --AVTSGV-------KDLREIIEEARKNRLLGRRTILFLDEIHRFN---KAQ---QD---ALLPHVENGTIILIGATTEN 142 (436)
T ss_pred --CCCCCH-------HHHHHHHHHHHHHHHCCCCEEEEEEHHHHCC---HHH---HH---HHHHHHCCCEEEEEECCCCC
T ss_conf --523467-------9999999999998725883499872253337---445---65---51033248868999626789
Q ss_pred HHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHH-HHHHHHHHC--CCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 99998520111432001443068786899999986-127665410--351211178999998654201555646798899
Q gi|254780163|r 344 EYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKG-IKPYFEEHH--QLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVI 420 (798)
Q Consensus 344 ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~-~~~~ye~~h--~v~~~~~al~~av~ls~ryi~~r~lPdkAidll 420 (798)
-| |+-++||-.|-+....+..+.++-.+.|+. +...-...- .+.++++|+...+.+|.-= -.+|..+|
T Consensus 143 Ps---F~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD------~R~aLN~L 213 (436)
T COG2256 143 PS---FELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGD------ARRALNLL 213 (436)
T ss_pred CC---EEECHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCH------HHHHHHHH
T ss_conf 87---1403888611041565169989999999999865413777655668889999999862861------99998899
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCHH
Q ss_conf 865333321144322113657899986631024531011100112334210000246653458
Q gi|254780163|r 421 DEAGASQILQPLSKRRKFITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQE 483 (798)
Q Consensus 421 Dea~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~ 483 (798)
+.+.-.. +.....+.+++.+++.+.. + ...++ .+.--++-.-|++.|=|-|
T Consensus 214 E~~~~~~------~~~~~~~~~~l~~~l~~~~---~--~~Dk~-gD~hYdliSA~hKSvRGSD 264 (436)
T COG2256 214 ELAALSA------EPDEVLILELLEEILQRRS---A--RFDKD-GDAHYDLISALHKSVRGSD 264 (436)
T ss_pred HHHHHHC------CCCCCCCHHHHHHHHHHHH---H--CCCCC-CCHHHHHHHHHHHHHCCCC
T ss_conf 9999862------7775247999999986552---0--56777-6347899999998612688
No 43
>CHL00176 ftsH cell division protein; Validated
Probab=99.53 E-value=1e-12 Score=110.54 Aligned_cols=223 Identities=23% Similarity=0.388 Sum_probs=148.1
Q ss_pred CCHHHHHHHHH---HHHHHHHHHCCC---------CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHH
Q ss_conf 61122217899---999999862267---------787489667641166899999999854898834520144554046
Q gi|254780163|r 202 KVDILVGRHEE---INRTIQILCRRS---------KNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMG 269 (798)
Q Consensus 202 KLDPVIGRd~E---I~riiqIL~RR~---------KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~ 269 (798)
.++-|.|-|+. ++.+++-|---. -.-++|+|+||.|||-++..+|- + .+..+|+++.+
T Consensus 175 tF~DVaG~~eaK~el~EivdfLk~P~k~~~~Gak~PkGvLL~GpPGTGKTlLAkAvAg---E-------a~vpF~~~sgs 244 (631)
T CHL00176 175 TFNDVAGVEEAKEELEEVVTFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG---E-------AEVPFFSISGS 244 (631)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHC---C-------CCCCEEEEEHH
T ss_conf 7532288589999999999983595887644996896589889899878899999856---5-------58846998837
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHH---CCCCCCCCCCCHHHHHHHHH-------CCCCEEEEEE
Q ss_conf 7530634312378999999987203898399973616630---15544434477788887663-------0266038873
Q gi|254780163|r 270 NLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLV---GAGSASGISVDASNLLKPAL-------SSGAVRCIGS 339 (798)
Q Consensus 270 ~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~li---gag~~~g~~~d~an~lkP~L-------~rg~~~~Iga 339 (798)
.++. .|.|.=..|++.+.+.+++..+.|+|||||..+= |+|.++| ...-.+.|-..| .+..+-+|||
T Consensus 245 ~F~e--~~vGvga~rVR~LF~~Ar~~aP~IiFIDEiDaig~~Rg~~~~gg-~~e~e~tlnqLL~emDGf~~~~gViViaA 321 (631)
T CHL00176 245 EFVE--MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGVGGG-NDEREQTLNQLLTEMDGFEGNKGVIVIAA 321 (631)
T ss_pred HHHH--HHCCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 8556--42155589999999999863996999871012011478988898-50899999999998428887888699982
Q ss_pred CCHHHHHHHHHCCHHHHH--HCEE-EEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHH-HHHHHHHHHHHCCCCCCHHH
Q ss_conf 048999998520111432--0014-4306878689999998612766541035121117-89999986542015556467
Q gi|254780163|r 340 TTYSEYRQFFEKDKALVR--RFQK-IDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEA-IRAAVQLSVRHFTSRKLPDK 415 (798)
Q Consensus 340 tT~~ey~~~~e~d~al~r--rF~~-i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~a-l~~av~ls~ryi~~r~lPdk 415 (798)
|...+ --|+||-| ||.+ |.|+-|+.+.-..||+--.. ++.+.+++ +...++.+. -|-+.-
T Consensus 322 TNrpd-----~LDpALlRPGRFDR~I~V~lPD~~gR~~IL~vh~k------~~~l~~dvdl~~iA~~T~-----GfSGAd 385 (631)
T CHL00176 322 TNRID-----ILDAALLRPGRFDRQVTVSLPDFEGRLDILKVHAR------NKKLAEDVSLELIARRTP-----GFSGAD 385 (631)
T ss_pred CCCCC-----CCCHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHH------CCCCCCCHHHHHHHHHCC-----CCCHHH
T ss_conf 58855-----45686626887754998269898999999999970------786665300999986269-----986788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCH
Q ss_conf 988998653333211443221136578999866310245310
Q gi|254780163|r 416 AIDVIDEAGASQILQPLSKRRKFITEKDIKKTIASMNRSIHT 457 (798)
Q Consensus 416 AidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~gip~ 457 (798)
--.|+.||+ +.+....+..|+..|+.+.+.+..-|.+.
T Consensus 386 LanlvNEAa----l~AaR~~~~~it~~d~~~AidrV~~G~ek 423 (631)
T CHL00176 386 LANLLNEAA----ILAARRRKNQITMSEIDEAIDRVIAGMEG 423 (631)
T ss_pred HHHHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 876999999----99998477764788999999999716566
No 44
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.52 E-value=1.8e-12 Score=108.71 Aligned_cols=226 Identities=20% Similarity=0.318 Sum_probs=147.3
Q ss_pred CCHHHHHHHHH---HHHHHHHH---------HCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHH
Q ss_conf 61122217899---99999986---------2267787489667641166899999999854898834520144554046
Q gi|254780163|r 202 KVDILVGRHEE---INRTIQIL---------CRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMG 269 (798)
Q Consensus 202 KLDPVIGRd~E---I~riiqIL---------~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~ 269 (798)
.++-|.|-|+. ++.+++-| .-|--.-++|+|+||.|||-++..+|- + .+.-+|+++.+
T Consensus 150 tF~DVaG~~eaK~el~EiVdfLk~P~k~~~~Gak~PkGvLL~GPPGtGKTlLAkAvAg---E-------a~vpF~~~sgs 219 (644)
T PRK10733 150 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG---E-------AKVPFFTISGS 219 (644)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHC---C-------CCCEEEEEEHH
T ss_conf 7104089789999999999981297999974997998517779899877899999864---5-------59808997847
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHC---CCCCCCCCCCHHHHHHHHH-------CCCCEEEEEE
Q ss_conf 75306343123789999999872038983999736166301---5544434477788887663-------0266038873
Q gi|254780163|r 270 NLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVG---AGSASGISVDASNLLKPAL-------SSGAVRCIGS 339 (798)
Q Consensus 270 ~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~lig---ag~~~g~~~d~an~lkP~L-------~rg~~~~Iga 339 (798)
.++ .+|.|.=+.|++.+++.+++..+.|+|||||..+-+ +|.+ |+...-.+.|-+.| .+..+-+|||
T Consensus 220 ef~--e~~vGvga~rVR~lF~~Ar~~aP~IIFIDEiDaig~~R~~~~~-gg~~e~~~tlNqlL~EmDGf~~~~~ViviaA 296 (644)
T PRK10733 220 DFV--EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLG-GGHDEREQTLNQMLVEMDGFEGNEGIIVIAA 296 (644)
T ss_pred HHH--HEEEECCHHHHHHHHHHHHHCCCEEEEEECHHCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 730--2225306899999999999669979999532203666789888-9832888789999999548888787699962
Q ss_pred CCHHHHHHHHHCCHHHHH--HCEE-EEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 048999998520111432--0014-4306878689999998612766541035121117899999865420155564679
Q gi|254780163|r 340 TTYSEYRQFFEKDKALVR--RFQK-IDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKA 416 (798)
Q Consensus 340 tT~~ey~~~~e~d~al~r--rF~~-i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkA 416 (798)
|...+ --|+||-| ||.+ |.|+-|+.+.-..||+--.. ++.+.++.- .-.++ |.-++ |-+.--
T Consensus 297 TNrpd-----~LD~ALlRPGRFDr~I~V~lPd~~~R~~ILkvh~~------~~~l~~dvd--l~~lA-~~T~G-fSGADL 361 (644)
T PRK10733 297 TNRPD-----VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR------RVPLAPDID--AAIIA-RGTPG-FSGADL 361 (644)
T ss_pred CCCCC-----CCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHC------CCCCCCCCC--HHHHH-CCCCC-CCHHHH
T ss_conf 69975-----54777716888655999779898899999999964------887773115--89884-45998-670333
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHH
Q ss_conf 8899865333321144322113657899986631024531011
Q gi|254780163|r 417 IDVIDEAGASQILQPLSKRRKFITEKDIKKTIASMNRSIHTTS 459 (798)
Q Consensus 417 idllDea~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~gip~~~ 459 (798)
-.|+.|| .+.+....+..|+..|+.+.+.+..-|.....
T Consensus 362 aNlvNEA----Al~AaR~~k~~It~~d~e~A~drV~~G~ekks 400 (644)
T PRK10733 362 ANLVNEA----ALFAARGNKRVVSMVEFEKAKDKIMMGAERRS 400 (644)
T ss_pred CCHHHHH----HHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 2599999----99998708754307668998888511534566
No 45
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.51 E-value=7.3e-13 Score=111.59 Aligned_cols=197 Identities=23% Similarity=0.367 Sum_probs=125.7
Q ss_pred HHCHHHHHHHHHHHHHH--------HHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCC
Q ss_conf 53458999999999877--------5204456578740688614320038899999873047733772068861246530
Q gi|254780163|r 479 VYGQEEAIKKLSSSIKI--------ARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVS 550 (798)
Q Consensus 479 v~GQ~~ai~~v~~~i~~--------~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs 550 (798)
|-|.++++..+-++|.. .+.|+..| -| .||.||+|+|||.+||++|...+.++++++.|++..+
T Consensus 134 IGGl~~~k~el~E~velPl~~pe~f~~~Gi~pP---kG-vLLyGPPGtGKTllAkAvA~e~~~~fi~v~~s~l~sk---- 205 (390)
T PRK03992 134 IGGLDEQIREVREAVELPLKNPELFEEVGIEPP---KG-VLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK---- 205 (390)
T ss_pred HCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCC---CE-EEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHC----
T ss_conf 149899999999999998659899997699999---72-7868989997899999999874888799667997524----
Q ss_pred HHCCCCCHHCCCCCC--CCCCHHHHHCCCEEEEECCHHH-----------CCHHHHHHHHHHHHHHHCCCCCCCEECCCC
Q ss_conf 110478000256444--3100355515851777404455-----------028999999998777502177997761254
Q gi|254780163|r 551 RLIGAPPGYVGFGQG--GILADSVDQNPYSVVLLDEIEK-----------SHPDVLNILLQIMDYGILTDQSGKKISFRN 617 (798)
Q Consensus 551 ~LiGappGYvG~~eg--g~Lte~vr~~P~sVvl~DEiEK-----------Ah~~v~~~llqild~G~ltd~~Gr~vdf~n 617 (798)
|+|-.+- -.+.+.-|++.-|||+||||+. ++.+|..+++|+|.+ -|+-. +-.|
T Consensus 206 --------~vGesek~vr~lF~~Ar~~aP~IiFiDEiDai~~~R~~~~~~g~~ev~r~l~qLL~e---mDG~~---~~~~ 271 (390)
T PRK03992 206 --------FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAE---MDGFD---PRGN 271 (390)
T ss_pred --------CCCHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH---CCCCC---CCCC
T ss_conf --------541799999999999997099089714325663356778886208899999999997---44877---7788
Q ss_pred EEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHH--CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 2999942421455330368988211148899999872887881--77682896288999999999999999999999866
Q gi|254780163|r 618 VILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFL--NRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEK 695 (798)
Q Consensus 618 ~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~pefl--nRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~ 695 (798)
.+||++||-= ...-|.++ +|+|..|.|.+-+.+.-..|+..+++.+.
T Consensus 272 V~VIaATNrp-------------------------d~LDpAllRpGRFDr~I~iplPd~~~R~~Ilki~~~~~~------ 320 (390)
T PRK03992 272 VKIIAATNRP-------------------------DILDPALLRPGRFDRIIEVPLPDEEGRLEILKIHTRKMN------ 320 (390)
T ss_pred EEEEEECCCC-------------------------HHCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCC------
T ss_conf 2799606981-------------------------005977754776523887089499999999999847999------
Q ss_pred CCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 988999889999999718981015326799999862359
Q gi|254780163|r 696 GISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKVP 734 (798)
Q Consensus 696 ~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~ 734 (798)
+.-.++ ++.|++.. ..|-...|+.+++.--..+
T Consensus 321 -l~~dvd---l~~lA~~T--~G~SGADI~~lc~EA~m~A 353 (390)
T PRK03992 321 -LADDVD---LEELAELT--EGASGADLKAICTEAGMFA 353 (390)
T ss_pred -CCCCCC---HHHHHHHC--CCCCHHHHHHHHHHHHHHH
T ss_conf -998889---99999768--7998999999999999999
No 46
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.51 E-value=5.8e-13 Score=112.32 Aligned_cols=183 Identities=21% Similarity=0.339 Sum_probs=125.3
Q ss_pred HHHHCHHHHHHH---HHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHC
Q ss_conf 665345899999---99998775204456578740688614320038899999873047733772068861246530110
Q gi|254780163|r 477 TVVYGQEEAIKK---LSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLI 553 (798)
Q Consensus 477 ~~v~GQ~~ai~~---v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~Li 553 (798)
..||||++.+.. +.+.|. .+++ .|++|.||+|||||-+|+.+|......++.++-+. ..|..+-
T Consensus 13 de~vGQ~hllg~~~~L~~~i~--------~~~~-~s~Il~GPPG~GKTTlA~iiA~~~~~~f~~lnA~~----~gv~dir 79 (417)
T PRK13342 13 DEVVGQEHLLGPGKPLRRMIE--------AGRL-SSMILWGPPGTGKTTLARIIAGATDAEFEALSAVT----SGVKDLR 79 (417)
T ss_pred HHHCCCHHHHCCCHHHHHHHH--------CCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC----CCHHHHH
T ss_conf 885798776089719999997--------6999-75998896999899999999998689889961410----3889999
Q ss_pred CCCCHHCCCCCCCCCCHHHHHC---CCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHH
Q ss_conf 4780002564443100355515---8517774044550289999999987775021779977612542999942421455
Q gi|254780163|r 554 GAPPGYVGFGQGGILADSVDQN---PYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALE 630 (798)
Q Consensus 554 GappGYvG~~egg~Lte~vr~~---P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~ 630 (798)
...+..++. -..|+++|||..-...-++.||..+++|++ ++|-.|+.
T Consensus 80 -------------~ii~~a~~~~~~~~tilfiDEIHRfnK~QQD~LLp~vE~g~i------------iLIgATTE----- 129 (417)
T PRK13342 80 -------------EVIEEAKQSRLGRRTILFIDEIHRFNKAQQDALLPHVEDGTI------------TLIGATTE----- 129 (417)
T ss_pred -------------HHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHHCCCE------------EEEEECCC-----
T ss_conf -------------999998863148965999978200588999999875112656------------99974157-----
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHH
Q ss_conf 33036898821114889999987288788177682896288999999999999999999999866988999889999999
Q gi|254780163|r 631 MSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLV 710 (798)
Q Consensus 631 ~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~ 710 (798)
.+.-. ..|.++.|+ .|+.|+||+.+++..|+.+-+.. . ...+..+.++++++++|+
T Consensus 130 -----------NP~f~--------in~aLlSRc-~vf~l~~L~~~di~~iL~ral~~-e---~~~~~~i~i~~~al~~i~ 185 (417)
T PRK13342 130 -----------NPSFE--------VNPALLSRA-QVFELKPLSEEDLEQLLKRALED-E---RGLGRKLELDDEALDALA 185 (417)
T ss_pred -----------CCHHH--------CCHHHHHHH-HHEECCCCCHHHHHHHHHHHHHH-H---HCCCCCCCCCHHHHHHHH
T ss_conf -----------92253--------489898565-70020589999999999999987-7---433788776999999999
Q ss_pred HCCCCCCCCCHHHHHHHHH
Q ss_conf 7189810153267999998
Q gi|254780163|r 711 SHGYDVKMGARPLERIIKE 729 (798)
Q Consensus 711 ~~~~~~~~GAR~l~r~i~~ 729 (798)
..+-. -||..-..++-
T Consensus 186 ~~s~G---DaR~aLN~LE~ 201 (417)
T PRK13342 186 RLADG---DARRALNLLEL 201 (417)
T ss_pred HHCCC---CHHHHHHHHHH
T ss_conf 81498---59999999999
No 47
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.51 E-value=7.4e-13 Score=111.56 Aligned_cols=226 Identities=20% Similarity=0.327 Sum_probs=159.9
Q ss_pred HHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC---CCCEEEEEHHHHHCCCCCC
Q ss_conf 0246653458999999999877520445657874068861432003889999987304---7733772068861246530
Q gi|254780163|r 474 NLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL---GVQLLRFDMSEYMERHAVS 550 (798)
Q Consensus 474 ~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~---~~~lir~dmsey~e~~~vs 550 (798)
..+..+||+..++..+.+.+++. ...+.|+ |+.|.+|+||+.+|+++-+.+ ..+|+.+||+.+.+..--+
T Consensus 3 ~~~~~liG~S~~m~~v~~~~~~~----A~~~~pV---LI~GE~GtGK~~~Ar~IH~~S~r~~~pfi~v~C~~l~~~~~e~ 75 (325)
T PRK11608 3 EYKDNLLGEANSFLEVLEQVSHL----APLDKPV---LIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDS 75 (325)
T ss_pred CCCCCCEECCHHHHHHHHHHHHH----HCCCCCE---EEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHH
T ss_conf 77899858999999999999999----6889998---9889898379999999996588679997788779899778899
Q ss_pred HHCCCCCH-HCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHH
Q ss_conf 11047800-02564443100355515851777404455028999999998777502177997761254299994242145
Q gi|254780163|r 551 RLIGAPPG-YVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGAL 629 (798)
Q Consensus 551 ~LiGappG-YvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~ 629 (798)
.|.|...| +.|.... ..-.+.+.--+.++||||+...++++.-||+++++|.+.--.|..--..|+=||.|||.--.
T Consensus 76 ~LFG~~~g~~~~~~~~--~~g~le~a~gGTL~L~eI~~l~~~~Q~~Ll~~l~~~~~~r~g~~~~~~~~~RiIa~t~~~l~ 153 (325)
T PRK11608 76 ELFGHEAGAFTGAQKR--HPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLP 153 (325)
T ss_pred HHCCCCCCCCCCCCCC--CCCHHHCCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEECCCHHHH
T ss_conf 8727755676775324--68734356898699737454799999999999864908857998766564688713322089
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEE-EECCCCC--HHHHHHHHHHHHHHHHHHHHHCCCEE--EECHH
Q ss_conf 5330368988211148899999872887881776828-9628899--99999999999999999998669889--99889
Q gi|254780163|r 630 EMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSI-IPFFPLS--SDIIRQVVHKFIMKLELQLQEKGISF--HFSEE 704 (798)
Q Consensus 630 ~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~i-i~F~~l~--~~~~~~i~~~~l~~l~~~l~~~~i~l--~~~~~ 704 (798)
...-+..|+++|+.|+..+ |..-||. .+++..+++.++.++.+++ +..+ .++++
T Consensus 154 ------------------~lv~~g~fr~dLy~rL~~~~I~lPpLReR~eDI~~L~~~fl~~~~~~~---~~~~~~~~s~~ 212 (325)
T PRK11608 154 ------------------AMVNEGTFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCREL---GLPLFPGFTER 212 (325)
T ss_pred ------------------HHHHHCCCHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHC---CCCCCCCCCHH
T ss_conf ------------------999839567999856530111586845471019999999999999982---99988888999
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 999999718981015326799999862
Q gi|254780163|r 705 VINWLVSHGYDVKMGARPLERIIKEHV 731 (798)
Q Consensus 705 ~~~~l~~~~~~~~~GAR~l~r~i~~~i 731 (798)
+.+.|....+--. -|.|+++|++-+
T Consensus 213 a~~~L~~y~WPGN--vrEL~n~ierav 237 (325)
T PRK11608 213 ARETLLNYRWPGN--IRELKNVVERSV 237 (325)
T ss_pred HHHHHHCCCCCCH--HHHHHHHHHHHH
T ss_conf 9999961999965--999999999999
No 48
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.49 E-value=1.4e-10 Score=95.23 Aligned_cols=347 Identities=20% Similarity=0.275 Sum_probs=228.4
Q ss_pred CEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHCEEE--EECCCCHHHHHH
Q ss_conf 839997361663015544434477788887663026603887304899999852011143200144--306878689999
Q gi|254780163|r 297 NAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKI--DVSEPSIEDAIE 374 (798)
Q Consensus 297 ~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i--~v~ep~~~~~~~ 374 (798)
.-||.||+ -.|.-.+|..+|.+....++.+...++-...+..+. |..| .+.-| ..+-+.
T Consensus 5 ~~iLvVDD-------------d~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~-----~~lvl~Di~mp-~~~Gl~ 65 (464)
T COG2204 5 ARILVVDD-------------DPDIRELLEQALELAGYEVVTAESAEEALEALSESP-----FDLVLLDIRMP-GMDGLE 65 (464)
T ss_pred CCEEEEEC-------------CHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCC-----CCEEEEECCCC-CCCHHH
T ss_conf 87899929-------------789999999999976974898589999999986289-----99899816789-996699
Q ss_pred HHHHHHHHHHHHCCCEECC-HHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 9986127665410351211-17899999865----420155564679889986533332114432211365789998663
Q gi|254780163|r 375 IVKGIKPYFEEHHQLRYSK-EAIRAAVQLSV----RHFTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIA 449 (798)
Q Consensus 375 iL~~~~~~ye~~h~v~~~~-~al~~av~ls~----ryi~~r~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~ 449 (798)
.|..++...-..-=+-+|- ..+..||+--+ -|+.--+-||+-+.++..|....+......
T Consensus 66 ll~~i~~~~~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~--------------- 130 (464)
T COG2204 66 LLKEIKSRDPDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRELQRENR--------------- 130 (464)
T ss_pred HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_conf 99999963899988998288999999999855703332189999999999999998765322210---------------
Q ss_pred HCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH
Q ss_conf 10245310111001123342100002466534589999999998775204456578740688614320038899999873
Q gi|254780163|r 450 SMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAF 529 (798)
Q Consensus 450 ~~~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~ 529 (798)
. -..-.......+||+..|+..+-+.+.+. .+.+- +.|..|.||+||--+|+++-.
T Consensus 131 ----------------~-~~~~~~~~~~~liG~S~am~~l~~~i~kv----A~s~a---~VLI~GESGtGKElvAr~IH~ 186 (464)
T COG2204 131 ----------------R-SLKRAKSLGGELVGESPAMQQLRRLIAKV----APSDA---SVLITGESGTGKELVARAIHQ 186 (464)
T ss_pred ----------------H-HHCCCCCCCCCCCCCCHHHHHHHHHHHHH----HCCCC---CEEEECCCCCCHHHHHHHHHH
T ss_conf ----------------0-00013455677520699999999999998----47799---789977898758999999986
Q ss_pred HC---CCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCC-------CEEEEECCHHHCCHHHHHHHHHH
Q ss_conf 04---773377206886124653011047800025644431003555158-------51777404455028999999998
Q gi|254780163|r 530 AL---GVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNP-------YSVVLLDEIEKSHPDVLNILLQI 599 (798)
Q Consensus 530 ~~---~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P-------~sVvl~DEiEKAh~~v~~~llqi 599 (798)
.+ ..+||.+||....+.--=|-|.|- ++ |-.|.|.+++. -..++||||+.-..+++.-||.+
T Consensus 187 ~S~R~~~PFVavNcaAip~~l~ESELFGh-------ek-GAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRv 258 (464)
T COG2204 187 ASPRAKGPFIAVNCAAIPENLLESELFGH-------EK-GAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRV 258 (464)
T ss_pred HCCCCCCCCEEEECCCCCHHHHHHHHHCC-------CC-CCCCCCCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 07445899256334648988877776145-------65-67677643457615773796587323110999999999999
Q ss_pred HHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCC-C--CHHH
Q ss_conf 777502177997761254299994242145533036898821114889999987288788177682896288-9--9999
Q gi|254780163|r 600 MDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFP-L--SSDI 676 (798)
Q Consensus 600 ld~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~-l--~~~~ 676 (798)
|.+|..+---|++.-=-|+=||.+||.-= ....-...|+.++.-|+..+-+.-| | -.++
T Consensus 259 Lqe~~~~rvG~~~~i~vdvRiIaaT~~dL------------------~~~v~~G~FReDLyyRLnV~~i~iPpLRER~ED 320 (464)
T COG2204 259 LQEREFERVGGNKPIKVDVRIIAATNRDL------------------EEEVAAGRFREDLYYRLNVVPLRLPPLRERKED 320 (464)
T ss_pred HHCCEEEECCCCCEECEEEEEEEECCCCH------------------HHHHHCCCCHHHHHHHHCCCEECCCCCCCCCHH
T ss_conf 87070673588860000169996057789------------------999881973788886523311048762236200
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9999999999999999866988999889999999718981015326799999862
Q gi|254780163|r 677 IRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHV 731 (798)
Q Consensus 677 ~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i 731 (798)
+--+++-++.+...++. .-...+++++...|....+-- --|.|+.++++.+
T Consensus 321 Ip~L~~hfl~~~~~~~~--~~~~~~s~~a~~~L~~y~WPG--NVREL~N~ver~~ 371 (464)
T COG2204 321 IPLLAEHFLKRFAAELG--RPPKGFSPEALAALLAYDWPG--NVRELENVVERAV 371 (464)
T ss_pred HHHHHHHHHHHHHHHHC--CCCCCCCHHHHHHHHHCCCCH--HHHHHHHHHHHHH
T ss_conf 79999999999999809--998887999999997389981--8999999999998
No 49
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.47 E-value=3.1e-13 Score=114.28 Aligned_cols=140 Identities=32% Similarity=0.488 Sum_probs=103.7
Q ss_pred HHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHC
Q ss_conf 33421000024665345899999999987752044565787406886143200388999998730477337720688612
Q gi|254780163|r 466 SVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYME 545 (798)
Q Consensus 466 ~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e 545 (798)
..+..+...+.+.++|+++++..+..++.. ++| .||.||+|||||.+|+++|...+.+++|+.+...+.
T Consensus 13 ~~~~~~~~~~~~~~~g~~~~~~~~l~a~~~--------~~~---vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~ 81 (329)
T COG0714 13 EILGKIRSELEKVVVGDEEVIELALLALLA--------GGH---VLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLL 81 (329)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHC--------CCC---EEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 666666652256552669999999999985--------997---787798987779999999998389818995689988
Q ss_pred CCCCCHHCCCC--------CHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCE-ECCC
Q ss_conf 46530110478--------00025644431003555158517774044550289999999987775021779977-6125
Q gi|254780163|r 546 RHAVSRLIGAP--------PGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKK-ISFR 616 (798)
Q Consensus 546 ~~~vs~LiGap--------pGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~-vdf~ 616 (798)
+.. ++|.. +++-=|- .|-|+.+++ +|+|+|||.+|.|++++.||++|++++.|... .. +.+.
T Consensus 82 p~d---~~G~~~~~~~~~~~~~~~~~-~gpl~~~~~----~ill~DEInra~p~~q~aLl~~l~e~~vt~~~-~~~~~~~ 152 (329)
T COG0714 82 PSD---LLGTYAYAALLLEPGEFRFV-PGPLFAAVR----VILLLDEINRAPPEVQNALLEALEERQVTVPG-LTTIRLP 152 (329)
T ss_pred HHH---HCCHHHHHHHHCCCCEEEEE-CCCCCCCCC----EEEEEECCCCCCHHHHHHHHHHHHHCEEEECC-CCCCCCC
T ss_conf 888---20568887664257718984-687334513----38998703458988999999999726897079-6653379
Q ss_pred C-EEEEEECC
Q ss_conf 4-29999424
Q gi|254780163|r 617 N-VILIMTTN 625 (798)
Q Consensus 617 n-~iii~TsN 625 (798)
. .++|.|+|
T Consensus 153 ~~f~viaT~N 162 (329)
T COG0714 153 PPFIVIATQN 162 (329)
T ss_pred CCCEEEEECC
T ss_conf 9878998268
No 50
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.46 E-value=4.5e-12 Score=105.92 Aligned_cols=215 Identities=22% Similarity=0.347 Sum_probs=158.0
Q ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC---CCCEEEEEHHHHHCCCCCCHHC
Q ss_conf 6653458999999999877520445657874068861432003889999987304---7733772068861246530110
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL---GVQLLRFDMSEYMERHAVSRLI 553 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~---~~~lir~dmsey~e~~~vs~Li 553 (798)
..+|||..++..+-+.|.+. .+.+-| .|..|.|||||..+|+++-..+ +.+||.+||+-..|.-.-|.|.
T Consensus 186 ~elIG~S~~m~~l~~~i~~v----A~sd~p---VLI~GEtGTGKelvAr~IH~~S~R~~~Pfv~vNCaalpe~l~EseLF 258 (510)
T PRK05022 186 GEMIGQSPAMQQLKKEIEVV----AASDLN---VLITGETGVGKELVARAIHQASPRAVKPLVYLNCAALPESLAESELF 258 (510)
T ss_pred CCEEECCHHHHHHHHHHHHH----HCCCCC---EEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHC
T ss_conf 97520899999999999999----689998---89889898139999999996688789985788899998567899865
Q ss_pred CCCCHHCCCCCCCCCCHHHHHCC-------CEEEEECCHHHCCHHHHHHHHHHHHHHHCC---CCCCCEECCCCEEEEEE
Q ss_conf 47800025644431003555158-------517774044550289999999987775021---77997761254299994
Q gi|254780163|r 554 GAPPGYVGFGQGGILADSVDQNP-------YSVVLLDEIEKSHPDVLNILLQIMDYGILT---DQSGKKISFRNVILIMT 623 (798)
Q Consensus 554 GappGYvG~~egg~Lte~vr~~P-------~sVvl~DEiEKAh~~v~~~llqild~G~lt---d~~Gr~vdf~n~iii~T 623 (798)
|--. |-.|-+++.+| .+.++||||+...++++.-||.+|++|.+. +.+-+.+|+| ||.+
T Consensus 259 Gh~k--------GaFtGA~~~r~G~fe~A~gGTLfLDEI~~Lpl~~Q~KLLrvLq~g~iqrvG~~~~~~vdvR---IIAA 327 (510)
T PRK05022 259 GHVK--------GAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVR---VIAA 327 (510)
T ss_pred CCCC--------CCCCCCCCCCCCCEEECCCCEEEEECHHHCCHHHHHHHHHHHHCCEEEECCCCCEEEEEEE---EEEE
T ss_conf 9777--------8868865567881017789879875745499999999999984795885589946666689---9960
Q ss_pred CCCCHHHHHHCCCCCCCCCCHHHHHHH-HHHHCCHHHHCCCCEEE-ECCCCC--HHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 242145533036898821114889999-98728878817768289-628899--99999999999999999998669889
Q gi|254780163|r 624 TNAGALEMSKARIGFGSSRNDDADKEA-LRNFLSPEFLNRLDSII-PFFPLS--SDIIRQVVHKFIMKLELQLQEKGISF 699 (798)
Q Consensus 624 sN~G~~~~~~~~~g~~~~~~~~~~~~~-l~~~f~peflnRid~ii-~F~~l~--~~~~~~i~~~~l~~l~~~l~~~~i~l 699 (798)
||.- ..+. -...|+.+|..|+..+. ..=||. .+++.-++..++.+...++..+. +
T Consensus 328 Tnrd-------------------L~~~V~~G~FR~DLYyRLsv~~I~vPPLRER~eDI~lLa~~FLe~~~~~~g~~~--~ 386 (510)
T PRK05022 328 TNRD-------------------LREEVLAGRFRADLYHRLSVFPLPVPPLRERGDDVLLLAGYFLEQNRLRLGLSS--L 386 (510)
T ss_pred CCCC-------------------HHHHHHCCCHHHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCC--C
T ss_conf 7835-------------------999988396389999876204034808655554099999999999999829898--9
Q ss_pred EECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 998899999997189810153267999998623
Q gi|254780163|r 700 HFSEEVINWLVSHGYDVKMGARPLERIIKEHVK 732 (798)
Q Consensus 700 ~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~ 732 (798)
.+++++.+.|....+-- --|.|+.+|++-+.
T Consensus 387 ~ls~eAl~~L~~Y~WPG--NVRELenvIeRA~l 417 (510)
T PRK05022 387 RLSPDAQAALLQYDWPG--NVRELEHVISRAAL 417 (510)
T ss_pred CCCHHHHHHHHCCCCCC--HHHHHHHHHHHHHH
T ss_conf 88899999997099997--89999999999999
No 51
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=99.46 E-value=3.9e-12 Score=106.39 Aligned_cols=258 Identities=25% Similarity=0.397 Sum_probs=157.7
Q ss_pred CCHHHHHHH-HHHHHHHHHHHCCCEECCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 786899999-98612766541035121117899999-8654201555646798899865333321144322113657899
Q gi|254780163|r 367 PSIEDAIEI-VKGIKPYFEEHHQLRYSKEAIRAAVQ-LSVRHFTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDI 444 (798)
Q Consensus 367 p~~~~~~~i-L~~~~~~ye~~h~v~~~~~al~~av~-ls~ryi~~r~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i 444 (798)
|+..+...| |..+.. ..++ +++||+.++ |. .+++..-..|+.=--++|
T Consensus 61 P~~~e~~~ial~~~~~----------------~iad~~A~R~v~~~------iE--------~~ve~~l~erq~~Yl~Ei 110 (616)
T TIGR02903 61 PDAKELAEIALEDTED----------------HIADILARRTVENE------IE--------RKVEKKLQERQNKYLEEI 110 (616)
T ss_pred CCCCCHHHHHHHHHHH----------------HHHHHHHHHHHHHH------HH--------HHHHHHHHHHHHHHHHHH
T ss_conf 7864126889998899----------------99998864335678------89--------999999887666899999
Q ss_pred HHHHHHCCCCCCHHHHHCCHHHHHHHHCC-------------HHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
Q ss_conf 98663102453101110011233421000-------------02466534589999999998775204456578740688
Q gi|254780163|r 445 KKTIASMNRSIHTTSFSRDDDSVLSNLEK-------------NLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYV 511 (798)
Q Consensus 445 ~~~~~~~~~gip~~~~~~~~~~~l~~l~~-------------~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~fl 511 (798)
...|.+-. +=|...-|-..-++|..||+ +--..|+||+.||.++..-+ ..| =|--. +
T Consensus 111 r~~vlk~~-~g~En~sTLKkl~~Le~Lek~kl~~s~~slLRP~~f~EiVGQerAI~aLlaK~-------aSP-fPQHi-i 180 (616)
T TIGR02903 111 RLQVLKEE-KGPENSSTLKKLERLEKLEKKKLAKSIQSLLRPRAFSEIVGQERAIKALLAKL-------ASP-FPQHI-I 180 (616)
T ss_pred HHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH-------CCC-CCCCE-E
T ss_conf 88775205-78861678899998752447889999998628766764333468999999763-------188-86607-8
Q ss_pred EECCCCHHHHHHHHHHH----------HHCCCCE-------EEEEHHHHHCCCCCCHHCCC--CCHHCCCCC--------
Q ss_conf 61432003889999987----------3047733-------77206886124653011047--800025644--------
Q gi|254780163|r 512 FSGPTGVGKTEISKQLA----------FALGVQL-------LRFDMSEYMERHAVSRLIGA--PPGYVGFGQ-------- 564 (798)
Q Consensus 512 f~GptGvGKTelak~la----------~~~~~~l-------ir~dmsey~e~~~vs~LiGa--ppGYvG~~e-------- 564 (798)
+-||+|||||-.|+..= |.-.-+| +|.|=-|-+.| |+|| -|=|=|..-
T Consensus 181 LYGPPGVGKTTaARl~LEe~K~~~~tPF~~DA~FvEVDGtTLRWDPREvTNP-----LLGSVHDPIYQGa~RDLAE~GvP 255 (616)
T TIGR02903 181 LYGPPGVGKTTAARLALEEAKKLKNTPFAEDAPFVEVDGTTLRWDPREVTNP-----LLGSVHDPIYQGARRDLAETGVP 255 (616)
T ss_pred EECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCHHHCCCCCC
T ss_conf 5573388478999998762136874476113785751576266774101477-----67762576556764011047879
Q ss_pred ---CCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCC
Q ss_conf ---43100355515851777404455028999999998777502177997761254299994242145533036898821
Q gi|254780163|r 565 ---GGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSS 641 (798)
Q Consensus 565 ---gg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~ 641 (798)
.|+.|+|== .|++.|||=--.|=.+|=||.||+| ++|.|+.+. .+
T Consensus 256 EPk~GLVT~AHG----GvLFIDEIGELD~lLQnKLLKVLED--------KrV~F~SsY--------------------YD 303 (616)
T TIGR02903 256 EPKLGLVTDAHG----GVLFIDEIGELDPLLQNKLLKVLED--------KRVEFSSSY--------------------YD 303 (616)
T ss_pred CCCCCCCCCCCC----CEEEEECHHHHHHHHHHHHHHHHCC--------CEEEEEECC--------------------CC
T ss_conf 898987100477----5676502112227876324443226--------436653212--------------------48
Q ss_pred CCHHHHHHHHHHHCC---------------------HHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 114889999987288---------------------78817768289628899999999999999999999986698899
Q gi|254780163|r 642 RNDDADKEALRNFLS---------------------PEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFH 700 (798)
Q Consensus 642 ~~~~~~~~~l~~~f~---------------------peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~ 700 (798)
.+++.+-.=+|+.|- |.+..|+.+| .|.||++.++..|+..--.+|+. .
T Consensus 304 pdD~NvPkYIK~lFe~GAPADFvLIGATTr~P~eINpALRSRCaEv-fFePL~p~dI~~Iv~~AA~klnv---------~ 373 (616)
T TIGR02903 304 PDDENVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEV-FFEPLTPEDIKEIVLNAAEKLNV---------K 373 (616)
T ss_pred CCCCCCCHHHHHHHCCCCCCCEEEECCCCCCHHHCCHHHHCCCCEE-ECCCCCHHHHHHHHHHHHHHCCC---------C
T ss_conf 7537865588885226888256872661588244051233014313-21798878999999998886177---------0
Q ss_pred ECHHHHHHHHH
Q ss_conf 98899999997
Q gi|254780163|r 701 FSEEVINWLVS 711 (798)
Q Consensus 701 ~~~~~~~~l~~ 711 (798)
+.+.+.+.++.
T Consensus 374 L~~gV~e~Ia~ 384 (616)
T TIGR02903 374 LAEGVEELIAR 384 (616)
T ss_pred CCCCHHHHHHH
T ss_conf 00364878721
No 52
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.45 E-value=6.3e-12 Score=104.86 Aligned_cols=219 Identities=17% Similarity=0.264 Sum_probs=158.7
Q ss_pred HHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC---CCCEEEEEHHHHHCCCCCCHHCC
Q ss_conf 653458999999999877520445657874068861432003889999987304---77337720688612465301104
Q gi|254780163|r 478 VVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL---GVQLLRFDMSEYMERHAVSRLIG 554 (798)
Q Consensus 478 ~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~---~~~lir~dmsey~e~~~vs~LiG 554 (798)
.++|++.+...+....+++ ...+-| .|..|.||+||+.+|+++-..+ ..+|+.+||.-..+.---+.|+|
T Consensus 326 ~l~g~s~~~~~~~~~a~~~----a~~~~p---VLI~GE~GtGKe~lAraIH~~S~r~~~pfv~vnC~ai~~~~~e~elfG 398 (639)
T PRK11388 326 HMPQDSPQMRRLIHFGRQA----AKSSFP---ILLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLLPDEALAEEFLG 398 (639)
T ss_pred HCCCCCHHHHHHHHHHHHH----HCCCCC---EEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCC
T ss_conf 4467999999999999999----688996---898898981099999999955777899818987898984678998738
Q ss_pred CCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHC
Q ss_conf 78000256444310035551585177740445502899999999877750217799776125429999424214553303
Q gi|254780163|r 555 APPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKA 634 (798)
Q Consensus 555 appGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~ 634 (798)
.-+| ...+|.+. ++....-..++||||+--.++++.-||++|++|..+...|.+.---++-||.+||.--
T Consensus 399 ~~~~---~~~~g~~g-~~e~A~gGTL~LdeI~~lp~~~Q~~LlrvL~~~~~~r~g~~~~~~vdvRiiaat~~~l------ 468 (639)
T PRK11388 399 SDRT---DSENGRLS-KFELAHGGTLFLEKVEYLSVELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADL------ 468 (639)
T ss_pred CCCC---CCCCCCCC-HHHCCCCCEEEECCHHHCCHHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEEECCHHH------
T ss_conf 7767---64346686-2440369828846726499999999999986593785699946664279997364508------
Q ss_pred CCCCCCCCCHHHHHHHH-HHHCCHHHHCCCCEE-EECCCCCH--HHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHH
Q ss_conf 68988211148899999-872887881776828-96288999--999999999999999999866988999889999999
Q gi|254780163|r 635 RIGFGSSRNDDADKEAL-RNFLSPEFLNRLDSI-IPFFPLSS--DIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLV 710 (798)
Q Consensus 635 ~~g~~~~~~~~~~~~~l-~~~f~peflnRid~i-i~F~~l~~--~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~ 710 (798)
.+.+ ...|+.+|+-|+... |..-||.+ +++..+++..+.++..+. +-.+.+++++.+.|.
T Consensus 469 -------------~~~v~~g~fr~dLyyrl~~~~i~lPpLReR~~Di~~L~~~~l~~~~~~~---~~~~~ls~~a~~~L~ 532 (639)
T PRK11388 469 -------------AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRF---STRLKIDDDALARLV 532 (639)
T ss_pred -------------HHHHHCCCCHHHHHHHHHHHHCCCCCHHHCHHHHHHHHHHHHHHHHHHC---CCCCCCCHHHHHHHH
T ss_conf -------------9998749854999987674410573323253439999999999999971---999998999999997
Q ss_pred HCCCCCCCCCHHHHHHHHHHH
Q ss_conf 718981015326799999862
Q gi|254780163|r 711 SHGYDVKMGARPLERIIKEHV 731 (798)
Q Consensus 711 ~~~~~~~~GAR~l~r~i~~~i 731 (798)
...+--. -|.|+.++++-+
T Consensus 533 ~y~WPGN--vrEL~nvl~~a~ 551 (639)
T PRK11388 533 SYRWPGN--DFELRSVIENLA 551 (639)
T ss_pred CCCCCCH--HHHHHHHHHHHH
T ss_conf 2899979--999999999999
No 53
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.43 E-value=2.4e-09 Score=86.36 Aligned_cols=65 Identities=18% Similarity=0.187 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf 69899999999999999809981259998787873774299999998499989999999830000
Q gi|254780163|r 82 PTSSFQRVVQRAVLHVQSTGRGIVTGANILVALFSEPDSHATYFLQEQEMTLYDAVNFISHGISK 146 (798)
Q Consensus 82 ~S~~l~rVL~~A~~~A~~~G~~~I~~eHLLLALL~e~ds~a~~iL~~~gis~~~v~~~i~~~~~~ 146 (798)
||+.++++|+.|...|..+++.+|+++|||++|+.+.++.+..+|..+|++...+.+.+...+..
T Consensus 1 ft~~a~~aL~~A~~~A~~~~h~~V~~eHlLlaLl~~~~~~~~~~L~~~gvd~~~l~~~l~~~l~~ 65 (852)
T TIGR03346 1 FTEKFQEALQAAQSLALGRDHQQIEPEHLLKALLDQEGGLARRLLQKAGVNVGALRQALEKELEK 65 (852)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 98899999999999999859990279999999973998479999998598999999999999973
No 54
>CHL00181 cbbX CbbX; Provisional
Probab=99.43 E-value=1.1e-10 Score=95.97 Aligned_cols=224 Identities=16% Similarity=0.264 Sum_probs=147.3
Q ss_pred CCHHHHHHHHCCHHHHHHHCHHHHHHHHHHH-------HHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHH----
Q ss_conf 0112334210000246653458999999999-------87752044565787406886143200388999998730----
Q gi|254780163|r 462 RDDDSVLSNLEKNLGTVVYGQEEAIKKLSSS-------IKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFA---- 530 (798)
Q Consensus 462 ~~~~~~l~~l~~~l~~~v~GQ~~ai~~v~~~-------i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~---- 530 (798)
..++..+..+-..|.+..||-+.....|-.- ..|...|+..+... -.++|+||+|+|||..|+.+|..
T Consensus 8 ~~~~~~lee~L~eLd~eliGL~~VK~~v~~l~~~~~~~~~R~~~Gl~~~~~s-~h~vF~GnPGTGKTTVARl~a~il~~l 86 (287)
T CHL00181 8 EYNKTQIQEVLDELDEELIGLVPVKTRIREIAALLLVDRLRKNLGLVSSSPG-LHMSFTGSPGTGKTTVALKMADILYRL 86 (287)
T ss_pred HHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 8645349999999988646969999999999999999999998799988876-538887899867999999999999986
Q ss_pred ---CCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCH-HHHHCCCEEEEECCHHH---------CCHHHHHHHH
Q ss_conf ---4773377206886124653011047800025644431003-55515851777404455---------0289999999
Q gi|254780163|r 531 ---LGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILAD-SVDQNPYSVVLLDEIEK---------SHPDVLNILL 597 (798)
Q Consensus 531 ---~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte-~vr~~P~sVvl~DEiEK---------Ah~~v~~~ll 597 (798)
....++-.+- +.|+| +|||.- +.-|. .+.+.--.|+++||--- --.++.+.|+
T Consensus 87 G~L~~g~vve~~r---------~dLvg---~yvG~T--a~kt~~~i~~a~GGVLfIDEAY~L~~~~~~~dfg~eaidtLl 152 (287)
T CHL00181 87 GYIKKGHLITVTR---------DDLVG---QYIGHT--APKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGAEAIEILL 152 (287)
T ss_pred CCCCCCEEEEECH---------HHHCC---CCCCCC--HHHHHHHHHHCCCCEEEEECHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 9955895899535---------88416---353521--699999999645987998244653578899983799999999
Q ss_pred HHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHH
Q ss_conf 98777502177997761254299994242145533036898821114889999987288788177682896288999999
Q gi|254780163|r 598 QIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDII 677 (798)
Q Consensus 598 qild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~ 677 (798)
+.|++.+ + +.++|+. |+ ...|+..-. ..|-|-.|+...+.|..++++++
T Consensus 153 ~~me~~~-----~------~lvvI~A-------------GY------~~eM~~fl~-~NpGL~sRf~~~i~F~dYt~~EL 201 (287)
T CHL00181 153 QVMENQR-----D------DLVVIFA-------------GY------KDRMDKFYE-SNPGLSSRVANHVDFPDYTPEEL 201 (287)
T ss_pred HHHHHCC-----C------CEEEEEE-------------CC------HHHHHHHHH-HCCCHHHHCCCEEECCCCCHHHH
T ss_conf 9987079-----9------8899984-------------67------899999998-59047876887237798599999
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEECHH----HHHHHHHCCCCCCCC-CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999866988999889----999999718981015-326799999862359999996
Q gi|254780163|r 678 RQVVHKFIMKLELQLQEKGISFHFSEE----VINWLVSHGYDVKMG-ARPLERIIKEHVKVPLADEIL 740 (798)
Q Consensus 678 ~~i~~~~l~~l~~~l~~~~i~l~~~~~----~~~~l~~~~~~~~~G-AR~l~r~i~~~i~~~la~~il 740 (798)
.+|...++. ++++. ++++ +.+++...--.+.|| ||-+++++++-+...-.+.+.
T Consensus 202 ~~I~~~~~~-------~~~~~--l~~~a~~~l~~~~~~~~~~~~FGNaR~vrnl~e~a~~~qa~Rl~~ 260 (287)
T CHL00181 202 LQIAKMMLE-------EQQYQ--LTPEAEKVLLDYIKRRMEQPLFANARSVRNAIDRARMRQANRIFA 260 (287)
T ss_pred HHHHHHHHH-------HCCCC--CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999-------86982--587999999999998508999874899999999999999988656
No 55
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.43 E-value=2.3e-12 Score=108.03 Aligned_cols=146 Identities=29% Similarity=0.403 Sum_probs=103.5
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC---CCCEEEEEHHHHHCCCCCCHHCCCCC
Q ss_conf 458999999999877520445657874068861432003889999987304---77337720688612465301104780
Q gi|254780163|r 481 GQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL---GVQLLRFDMSEYMERHAVSRLIGAPP 557 (798)
Q Consensus 481 GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~---~~~lir~dmsey~e~~~vs~LiGapp 557 (798)
||+..+..+...+.. .|....||.||+|+|||.+|+++|..+ +..++.++++++......+...+.
T Consensus 2 ~~~~~~~~l~~~~~~---------~~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 70 (151)
T cd00009 2 GQEEAIEALREALEL---------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGH-- 70 (151)
T ss_pred CCHHHHHHHHHHHHC---------CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHHHHHHHHH--
T ss_conf 857999999999818---------799808998999988659999999971213798278547770467777576057--
Q ss_pred HHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCC
Q ss_conf 00256444310035551585177740445502899999999877750217799776125429999424214553303689
Q gi|254780163|r 558 GYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIG 637 (798)
Q Consensus 558 GYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g 637 (798)
...............+|+++|||+++.+...+.++++|+..... .....++.+|++||-...
T Consensus 71 -----~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~l~~~~~~-----~~~~~~~~vI~~tn~~~~-------- 132 (151)
T cd00009 71 -----FLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDL-----RIDRENVRVIGATNRPLL-------- 132 (151)
T ss_pred -----HHHHHHHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHHHCCC-----CCCCCCEEEEEEECCCCC--------
T ss_conf -----78898999999769986982016655999999999999871575-----406788899995289988--------
Q ss_pred CCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECC
Q ss_conf 882111488999998728878817768289628
Q gi|254780163|r 638 FGSSRNDDADKEALRNFLSPEFLNRLDSIIPFF 670 (798)
Q Consensus 638 ~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~ 670 (798)
..+.+.+.+|++..+.|.
T Consensus 133 ---------------~~~~~~~~~R~~~~i~~~ 150 (151)
T cd00009 133 ---------------GDLDRALYDRLDIRIVIP 150 (151)
T ss_pred ---------------CCHHHHHHCCCCEEEECC
T ss_conf ---------------683776425598698638
No 56
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=99.42 E-value=1.4e-12 Score=109.47 Aligned_cols=231 Identities=25% Similarity=0.367 Sum_probs=133.3
Q ss_pred CHHHHHHHHHHHHHHHHHH------------CCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHH
Q ss_conf 1122217899999999862------------2677874896676411668999999998548988345201445540467
Q gi|254780163|r 203 VDILVGRHEEINRTIQILC------------RRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGN 270 (798)
Q Consensus 203 LDPVIGRd~EI~riiqIL~------------RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~ 270 (798)
+.=|=|-|++=+.+++|-- =|-=--+|||||||+|||=|+-..|- +-.|| .|+.+.+.
T Consensus 58 F~DVAG~dEAKeEl~EiVdFLK~P~kf~~LGaKIPKGVLLvGPPGTGKTLLAKAvAG---EA~VP-------FF~iSGSd 127 (505)
T TIGR01241 58 FKDVAGIDEAKEELVEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAG---EAGVP-------FFSISGSD 127 (505)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHC---CCCCC-------CEEECCCC
T ss_conf 234445323334333134222696379872788987147317878424678875202---58896-------24740761
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHH---HCCCCCCCCCCC-H---HHHHHHH----HCCCCEEEEEE
Q ss_conf 53063431237899999998720389839997361663---015544434477-7---8888766----30266038873
Q gi|254780163|r 271 LIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTL---VGAGSASGISVD-A---SNLLKPA----LSSGAVRCIGS 339 (798)
Q Consensus 271 l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~l---igag~~~g~~~d-~---an~lkP~----L~rg~~~~Iga 339 (798)
.|= .+.|==-.|++.+++.++++-+.|.|||||--+ =|||.-+||. | = =|-|.=- =++-.+=+|+|
T Consensus 128 FVE--MFVGVGASRVRDLFeqAK~nAPCIIFIDEIDAVGr~RGaG~lGGGn-DEREQTLNQLLVEMDGF~~~~gvIv~AA 204 (505)
T TIGR01241 128 FVE--MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGELGGGN-DEREQTLNQLLVEMDGFGTNTGVIVIAA 204 (505)
T ss_pred EEE--CCCCCCCEEHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCCCCCC-CHHHHHHHHHHEECCCCCCCCCEEEEEE
T ss_conf 011--1205640001445799997189705640100003335643667654-1355433233133178589885799850
Q ss_pred CC-HHHHHHHHHCCHHHHH--HCEE-EEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHH-HHHHHHHHHHCCCCCCHH
Q ss_conf 04-8999998520111432--0014-43068786899999986127665410351211178-999998654201555646
Q gi|254780163|r 340 TT-YSEYRQFFEKDKALVR--RFQK-IDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAI-RAAVQLSVRHFTSRKLPD 414 (798)
Q Consensus 340 tT-~~ey~~~~e~d~al~r--rF~~-i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al-~~av~ls~ryi~~r~lPd 414 (798)
|- || ==|+||.| ||.+ |.|+-|+...=.+||+-=. +++++.+++- ...++..-=| ++=-|
T Consensus 205 TNRPD------vLD~ALLRPGRFDRQv~V~~PD~~GR~~IL~VH~------~~~kLa~~vdL~~~Ar~TPGf-SGADL-- 269 (505)
T TIGR01241 205 TNRPD------VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHA------KNKKLAPDVDLKAVARRTPGF-SGADL-- 269 (505)
T ss_pred CCCCC------CCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHH------CCCCCCCCCCHHHHHHHCCCC-CHHHH--
T ss_conf 48841------1651006878744513458887467899999985------488997024779997015687-67889--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHCCHHHH
Q ss_conf 79889986533332114432211365789998663102453101110011233
Q gi|254780163|r 415 KAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIASMNRSIHTTSFSRDDDSV 467 (798)
Q Consensus 415 kAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~gip~~~~~~~~~~~ 467 (798)
=.|+.|| .+-+....+..|+..|+.+.+-+..-|.-...+.-++.+|
T Consensus 270 --aNl~NEA----ALlAAR~n~~~i~~~~~eeA~Drv~~G~ekKsr~is~~eK 316 (505)
T TIGR01241 270 --ANLLNEA----ALLAARKNKTEITMNDIEEAVDRVIAGLEKKSRVISEKEK 316 (505)
T ss_pred --HHHHHHH----HHHHHHCCCCEECHHHHHHHHHHHHCCCCCCCCCCCHHHC
T ss_conf --9999999----9998617986562888987877652276678853267774
No 57
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.41 E-value=6.2e-12 Score=104.90 Aligned_cols=99 Identities=16% Similarity=0.211 Sum_probs=49.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCC----CCCCHHHHHH------HHHHCHHHH-HHHH-HCCCCHHHHHHHHHHHHHHCC
Q ss_conf 973438999999999999998289----9511999999------982074689-9999-859998999999999964136
Q gi|254780163|r 1 MSFFSENLEKVLHQALVLANERNH----EYATLEHLLL------ALIDDSDAA-IVML-SCNVDLKVLKNNLLNYIDNDS 68 (798)
Q Consensus 1 M~mfS~~a~~vL~~A~~lAk~~~H----~~Vt~EHLLL------aLL~d~~~~-~iL~-~~giD~~~Lk~~Le~~L~~~~ 68 (798)
|+.|+-...+-.....=+|.+++- ++|+=+||+- -+++.+... -||- --|+-- ..+...+.+..
T Consensus 1 mdlf~~~~~~~~~~~aPLA~rmRP~~Lde~vGQ~hllg~g~~Lrr~i~~~~~~S~Il~GPPGtGK----TTLA~iIA~~t 76 (726)
T PRK13341 1 MDLFAFHGEQQRRSEAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGK----TTLARIIANHT 76 (726)
T ss_pred CCHHHHHHHHHHHCCCCCHHHHCCCCHHHHCCCHHHCCCCCHHHHHHHCCCCCEEEEECCCCCCH----HHHHHHHHHHH
T ss_conf 96155647765332698568629998777359575428982899999769998278889799999----99999998874
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 545778886776469899999999999999809981
Q gi|254780163|r 69 SNKLKNGFRVECKPTSSFQRVVQRAVLHVQSTGRGI 104 (798)
Q Consensus 69 ~~~~~~~~~~ei~~S~~l~rVL~~A~~~A~~~G~~~ 104 (798)
...+..- .-...-..+++++++.|...-..+|...
T Consensus 77 ~~~F~~l-sAv~sgvkdlr~ii~~A~~~~~~~g~~t 111 (726)
T PRK13341 77 RAHFSSL-NAVLAGVKDLRAEVDAAKERLERHGKRT 111 (726)
T ss_pred CCCEEEE-ECCCCCHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 8867998-5620377999999999999987459965
No 58
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.40 E-value=1.3e-11 Score=102.69 Aligned_cols=204 Identities=17% Similarity=0.215 Sum_probs=136.5
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHH----------HHEEEEE
Q ss_conf 887754861122217899999999862267787489667641166899999999854898834----------5201445
Q gi|254780163|r 195 TEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDI----------LLGARIF 264 (798)
Q Consensus 195 Te~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~----------l~~~~i~ 264 (798)
+++-|=-.+|-|+|-+.-++.+...+..++-.+-++.|+||+|||+.+.-+|+.+.-...... -+++..+
T Consensus 6 veKYRP~~~~dvvGq~~i~~~L~~~~~~~~~phlLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~~~~~~i 85 (337)
T PRK12402 6 TEKYRPSLFEDILGQESVVDHLSALAASGNLPHLVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFDQGKKYL 85 (337)
T ss_pred CCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEE
T ss_conf 21418897998039799999999999779987698889298489999999999967997567833311653113564001
Q ss_pred EEEH--HHHHCCCCCCCH-HHHHHHHHHHHHCCC-----CCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHC--CCCE
Q ss_conf 5404--675306343123-789999999872038-----98399973616630155444344777888876630--2660
Q gi|254780163|r 265 SLDM--GNLIAGTRYRGD-FEERIKKIVKEIESY-----ANAILYIDEIHTLVGAGSASGISVDASNLLKPALS--SGAV 334 (798)
Q Consensus 265 ~ld~--~~l~ag~~~rg~-fe~r~~~~~~~~~~~-----~~~ilfideih~ligag~~~g~~~d~an~lkP~L~--rg~~ 334 (798)
.-|- ..++.+..-.|. .-.-++.++++.... +--|++|||.|.+ +-+|.|-|...|. ....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~l---------t~~Aq~aLlk~lEe~~~~~ 156 (337)
T PRK12402 86 VEDPRFAHFYDDPKRKYKSVIDNFKHILKEYASMRPLSADYKLILFDNAEAL---------REDAQQALRRIMERYSETC 156 (337)
T ss_pred ECCCCHHHHHCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCC---------CHHHHHHHHHHHHCCCCCE
T ss_conf 0166423442015332773789999999998614887788049997071317---------9999999998874088766
Q ss_pred EEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 38873048999998520111432001443068786899999986127665410351211178999998654201555646
Q gi|254780163|r 335 RCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPD 414 (798)
Q Consensus 335 ~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPd 414 (798)
++|-+||.. .+.+ +++-.|-+.+....|+.++-...|+.+... .++.++++++...+..|..- ..
T Consensus 157 ~fIl~t~~~--~~ii---~tI~SRC~~i~F~~~s~~~i~~~L~~I~~~----E~i~~~~~~l~~ia~~s~Gd------lR 221 (337)
T PRK12402 157 RFIFSTTQP--SKLI---PPIRSRCLPLFFRPVPDDEIRSVLESIAAA----EGVEISDDGLDLIAYYAEGD------LR 221 (337)
T ss_pred EEEEECCCC--CCCC---HHHHHHCEEEECCCCCHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHCCCC------HH
T ss_conf 998723864--4475---247762445435898999999999999998----49998999999999986998------99
Q ss_pred HHHHHHHH
Q ss_conf 79889986
Q gi|254780163|r 415 KAIDVIDE 422 (798)
Q Consensus 415 kAidllDe 422 (798)
+||.+|.-
T Consensus 222 ~ain~Lq~ 229 (337)
T PRK12402 222 KAILTLQL 229 (337)
T ss_pred HHHHHHHH
T ss_conf 99999999
No 59
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=5.6e-11 Score=98.07 Aligned_cols=195 Identities=25% Similarity=0.359 Sum_probs=129.2
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHH
Q ss_conf 74896676411668999999998548988345201445540467530634312378999999987203898399973616
Q gi|254780163|r 227 NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIH 306 (798)
Q Consensus 227 n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih 306 (798)
-.+|.|+||.|||.++..+|. ..+.++++++...+ -.+|-||.|..++.++..+++....|+||||+.
T Consensus 278 giLl~GpPGtGKT~lAkava~----------~~~~~fi~v~~~~l--~sk~vGesek~ir~~F~~A~~~~p~iifiDEiD 345 (494)
T COG0464 278 GVLLYGPPGTGKTLLAKAVAL----------ESRSRFISVKGSEL--LSKWVGESEKNIRELFEKARKLAPSIIFIDEID 345 (494)
T ss_pred EEEEECCCCCCHHHHHHHHHH----------HCCCCEEEECCHHH--HHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHH
T ss_conf 699988999758999999875----------44982488433555--407765999999999999996699889748866
Q ss_pred HHHCCCCCCCC-CC-CH-HHHHHHH--H-CCCCEEEEEECCHHHHHHHHHCCHHHHH--HCEE-EEECCCCHHHHHHHHH
Q ss_conf 63015544434-47-77-8888766--3-0266038873048999998520111432--0014-4306878689999998
Q gi|254780163|r 307 TLVGAGSASGI-SV-DA-SNLLKPA--L-SSGAVRCIGSTTYSEYRQFFEKDKALVR--RFQK-IDVSEPSIEDAIEIVK 377 (798)
Q Consensus 307 ~ligag~~~g~-~~-d~-an~lkP~--L-~rg~~~~IgatT~~ey~~~~e~d~al~r--rF~~-i~v~ep~~~~~~~iL~ 377 (798)
.+....+.++. +. .+ .++|.-. + ....+.+||||.... .-|+|+-| ||+. +.|..|+.++...|++
T Consensus 346 s~~~~r~~~~~~~~~rv~~~ll~~~d~~e~~~~v~vi~aTN~p~-----~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~ 420 (494)
T COG0464 346 SLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPD-----DLDPALLRPGRFDRLIYVPLPDLEERLEIFK 420 (494)
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC-----CCCHHHHCCCCCEEEEEECCCCHHHHHHHHH
T ss_conf 67412899876379999999999974754437648996479833-----2687562436630378717989899999999
Q ss_pred HHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHH
Q ss_conf 6127665410351211178999998654201555646798899865333321144322-113657899986631
Q gi|254780163|r 378 GIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEAGASQILQPLSKR-RKFITEKDIKKTIAS 450 (798)
Q Consensus 378 ~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea~a~~~~~~~~~~-~~~~~~~~i~~~~~~ 450 (798)
-...+.... ...+--+...++.+ +.+..--...++.+|+ +....+. ...++.+|....+..
T Consensus 421 ~~~~~~~~~---~~~~~~~~~l~~~t-----~~~sgadi~~i~~ea~----~~~~~~~~~~~~~~~~~~~a~~~ 482 (494)
T COG0464 421 IHLRDKKPP---LAEDVDLEELAEIT-----EGYSGADIAALVREAA----LEALREARRREVTLDDFLDALKK 482 (494)
T ss_pred HHHCCCCCC---HHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHH----HHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 985415651---15564199999875-----2778999999999999----98998545776349999999862
No 60
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.39 E-value=3.3e-11 Score=99.71 Aligned_cols=215 Identities=20% Similarity=0.287 Sum_probs=156.8
Q ss_pred HHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC---CCCEEEEEHHHHHCCCCCCHH
Q ss_conf 46653458999999999877520445657874068861432003889999987304---773377206886124653011
Q gi|254780163|r 476 GTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL---GVQLLRFDMSEYMERHAVSRL 552 (798)
Q Consensus 476 ~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~---~~~lir~dmsey~e~~~vs~L 552 (798)
-..+||+.+++..+.+..++. ...+.| .|..|.||+||..+|+++-..+ ..+|+.+||+-..+..--|.|
T Consensus 203 F~~iig~S~~m~~v~~~a~r~----A~~d~p---VLI~GEsGTGKellAraIH~~S~R~~~pFv~vnC~alp~~l~eseL 275 (513)
T PRK10820 203 FSQIVAVSPKMKHVVEQARKL----AMLSAP---LLITGDTGTGKDLFAYACHLASPRAKKPYLALNCASIPEDAVESEL 275 (513)
T ss_pred HHHHEECCHHHHHHHHHHHHH----HCCCCC---EEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHH
T ss_conf 777510899999999999998----598998---8998989824999999999668878998268889989967899986
Q ss_pred CCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCC---CCCCEECCCCEEEEEECCCCHH
Q ss_conf 0478000256444310035551585177740445502899999999877750217---7997761254299994242145
Q gi|254780163|r 553 IGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTD---QSGKKISFRNVILIMTTNAGAL 629 (798)
Q Consensus 553 iGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd---~~Gr~vdf~n~iii~TsN~G~~ 629 (798)
.|.-+ -+.-|.+- ..--.-++||||+-..++++.-||++|++|..+- ..-..+ |+=||.+||.-
T Consensus 276 FG~a~----~~~~G~fe----~A~gGTLfLdEI~~l~~~~Q~kLLr~Lq~~~~~rvG~~~~~~~---dvRiIaaT~~d-- 342 (513)
T PRK10820 276 FGHAP----EGKKGFFE----QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHV---DVRVICATQKN-- 342 (513)
T ss_pred CCCCC----CCCCCCEE----ECCCCEEEEECHHHCCHHHHHHHHHHHHCCEEEECCCCCEEEE---EEEEEECCCHH--
T ss_conf 38766----68897557----8589889997836599999999999986897996599853567---78999626530--
Q ss_pred HHHHCCCCCCCCCCHHHHHHHH-HHHCCHHHHCCCCEEE-ECCCCC--HHHHHHHHHHHHHHHHHHHHHCCCEEEECHHH
Q ss_conf 5330368988211148899999-8728878817768289-628899--99999999999999999998669889998899
Q gi|254780163|r 630 EMSKARIGFGSSRNDDADKEAL-RNFLSPEFLNRLDSII-PFFPLS--SDIIRQVVHKFIMKLELQLQEKGISFHFSEEV 705 (798)
Q Consensus 630 ~~~~~~~g~~~~~~~~~~~~~l-~~~f~peflnRid~ii-~F~~l~--~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~ 705 (798)
..+.+ +..|+.+|.-|+..+. ..-||. .+++..+++.++.++..+.... ...+++++
T Consensus 343 -----------------L~~lv~~g~FReDLyyRL~v~~I~lPpLReR~eDI~~L~~~fl~~~~~~~g~~--~~~ls~~a 403 (513)
T PRK10820 343 -----------------LVELVQKGLFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVP--RPKLSADL 403 (513)
T ss_pred -----------------HHHHHHCCCCCHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCC--CCCCCHHH
T ss_conf -----------------99998729850889998616725588834465569999999999999975999--89847999
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999718981015326799999862
Q gi|254780163|r 706 INWLVSHGYDVKMGARPLERIIKEHV 731 (798)
Q Consensus 706 ~~~l~~~~~~~~~GAR~l~r~i~~~i 731 (798)
.++|....+- --.|.|+.+|++-+
T Consensus 404 ~~~L~~y~WP--GNVREL~n~iera~ 427 (513)
T PRK10820 404 STVLTRYGWP--GNVRQLKNAIYRAL 427 (513)
T ss_pred HHHHHHCCCC--CHHHHHHHHHHHHH
T ss_conf 9999708999--79999999999999
No 61
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.38 E-value=1.1e-09 Score=88.69 Aligned_cols=64 Identities=19% Similarity=0.223 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 6989999999999999980998125999878787377429999999849998999999983000
Q gi|254780163|r 82 PTSSFQRVVQRAVLHVQSTGRGIVTGANILVALFSEPDSHATYFLQEQEMTLYDAVNFISHGIS 145 (798)
Q Consensus 82 ~S~~l~rVL~~A~~~A~~~G~~~I~~eHLLLALL~e~ds~a~~iL~~~gis~~~v~~~i~~~~~ 145 (798)
+||.++++|+.|...|..+++++|+++|||+||+.++++.+..+|.++|++...+.+.+...+.
T Consensus 1 Lt~~~~~aL~~A~~~A~~~~H~~I~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~ 64 (852)
T TIGR03345 1 LNPTSRRALEQAAALCVARGHPEVELEHWLLALLDQPDSDLAAILRHFGVDLGRLKADLARALD 64 (852)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 9889999999999999985998138999999998399747999999869999999999999996
No 62
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=99.35 E-value=9.8e-12 Score=103.47 Aligned_cols=118 Identities=33% Similarity=0.584 Sum_probs=87.3
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHH
Q ss_conf 48966764116689999999985489883452014455404675306343123789999999872038983999736166
Q gi|254780163|r 228 PLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHT 307 (798)
Q Consensus 228 ~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ 307 (798)
.+|.|+||+|||.+++.+|... +..+++++...+. .+|.|+-+++++.++++++...+.||||||+|.
T Consensus 1 iLl~GppGtGKT~~a~~la~~~----------~~~~~~v~~~~~~--~~~~g~~~~~i~~~f~~a~~~~p~Il~iDe~d~ 68 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKEL----------GAPFIEISGSELV--SKYVGESEKRLRELFEAAKKLAPCVIFIDEIDA 68 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHH----------CCCCEECCCCCCC--CCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHH
T ss_conf 9878999999999999999997----------8985332420122--233450688899999999974991898311677
Q ss_pred HHCCCCCCCC--CCCHHHHHHHHHCC-----CCEEEEEECCHHHHHHHHHCCHHHHH-HCEEE
Q ss_conf 3015544434--47778888766302-----66038873048999998520111432-00144
Q gi|254780163|r 308 LVGAGSASGI--SVDASNLLKPALSS-----GAVRCIGSTTYSEYRQFFEKDKALVR-RFQKI 362 (798)
Q Consensus 308 ligag~~~g~--~~d~an~lkP~L~r-----g~~~~IgatT~~ey~~~~e~d~al~r-rF~~i 362 (798)
+.+.....++ ...+.+.|.+.|.. +.+-+||+|..-+ .-|+|+-| ||+.+
T Consensus 69 l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~~I~tTN~~~-----~ld~al~r~Rfd~~ 126 (131)
T pfam00004 69 LAGSRGSGGDSESRRVVNQLLTELDGFTSSLSKVIVIAATNRPD-----KLDPALLRGRFDRI 126 (131)
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHH-----HCCHHHHCCCCEEE
T ss_conf 75167888887513268789999850224688769999759904-----49977962833289
No 63
>PRK04195 replication factor C large subunit; Provisional
Probab=99.34 E-value=1.7e-11 Score=101.71 Aligned_cols=180 Identities=20% Similarity=0.329 Sum_probs=117.5
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHC----C-CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHH
Q ss_conf 8877548611222178999999998622----6-7787489667641166899999999854898834520144554046
Q gi|254780163|r 195 TEKVKKGKVDILVGRHEEINRTIQILCR----R-SKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMG 269 (798)
Q Consensus 195 Te~AreGKLDPVIGRd~EI~riiqIL~R----R-~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~ 269 (798)
+++-|=..++-++|-+.-++.+.+-|.. + .+...+|.|+||||||++++.+|... |..+++++.+
T Consensus 5 veKYRPk~~~divg~~~~v~~l~~Wl~~w~~g~~~~k~lLL~GPpGvGKTT~a~~lAk~~----------g~~viElNAS 74 (403)
T PRK04195 5 VEKYRPKSLSDVVGNEKAKKQLREWIESWLKGKPPKKALLLYGPPGVGKTSLAHALANDY----------GWEVIELNAS 74 (403)
T ss_pred CCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH----------CCCEEEECCC
T ss_conf 402189989998588999999999999987399657469988939987999999999984----------9985997710
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHCC------CCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 7530634312378999999987203------8983999736166301554443447778888766302660388730489
Q gi|254780163|r 270 NLIAGTRYRGDFEERIKKIVKEIES------YANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYS 343 (798)
Q Consensus 270 ~l~ag~~~rg~fe~r~~~~~~~~~~------~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~IgatT~~ 343 (798)
. ..-+ +.++.++..... .+.-|+++||+|.+-|.+-.+| --..-+++| .....+|..++ +
T Consensus 75 D----~R~~----~~I~~~i~~~~~~~sl~~~~~KlIIlDEvD~l~~~~d~gg-~~al~~~ik----~s~~PiIli~N-d 140 (403)
T PRK04195 75 D----QRTK----DVIERVAGEASTSGSLFGAKRKLILLDEVDGIHGNADRGG-VRAILEIIK----KAKNPIILTAN-D 140 (403)
T ss_pred C----CCCH----HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHH-HHHHHHHHH----CCCCEEEEEEC-C
T ss_conf 1----1478----9999999987606887788734999634344572444799-999999985----48870899826-8
Q ss_pred HHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHH
Q ss_conf 99998520111432001443068786899999986127665410351211178999998654
Q gi|254780163|r 344 EYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVR 405 (798)
Q Consensus 344 ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~r 405 (798)
-|.+.+ +.|..|-+.|....|+.++-...|+.+.. ..++.+++++|...++.|.-
T Consensus 141 ~~~~~~---~~lrs~c~~i~F~~~~~~~I~~~L~~I~~----~Egi~i~~~aL~~Ia~~s~G 195 (403)
T PRK04195 141 PYDPSL---RPLRNACLMIEFKRLSKRSIVPVLKRICR----KEGIECEEEALREIAERSGG 195 (403)
T ss_pred CCCCCH---HHHHHHHHHCCCCCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHCCC
T ss_conf 455671---77997661221799499999999999999----76999999999999998797
No 64
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.33 E-value=7.3e-08 Score=75.68 Aligned_cols=66 Identities=12% Similarity=0.164 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf 469899999999999999809981259998787873774299999998499989999999830000
Q gi|254780163|r 81 KPTSSFQRVVQRAVLHVQSTGRGIVTGANILVALFSEPDSHATYFLQEQEMTLYDAVNFISHGISK 146 (798)
Q Consensus 81 ~~S~~l~rVL~~A~~~A~~~G~~~I~~eHLLLALL~e~ds~a~~iL~~~gis~~~v~~~i~~~~~~ 146 (798)
.+|+.++++|+.|...|...++.+|+++|||+||+.+.++.+..+|..+|++...+.+.+...+..
T Consensus 5 k~t~~~~~al~~A~~~A~~~~h~~v~~eHll~all~~~~~~~~~~l~~~~~d~~~l~~~l~~~l~~ 70 (857)
T PRK10865 5 RLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVRPLLTSAGINAGQLRTDINQALNR 70 (857)
T ss_pred HCCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 539999999999999999859884359999999976997479999998699999999999999862
No 65
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.33 E-value=3.3e-12 Score=106.92 Aligned_cols=108 Identities=23% Similarity=0.356 Sum_probs=81.7
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCC--CEEEEECCHHH
Q ss_conf 8861432003889999987304773377206886124653011047800025644431003555158--51777404455
Q gi|254780163|r 510 YVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNP--YSVVLLDEIEK 587 (798)
Q Consensus 510 flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P--~sVvl~DEiEK 587 (798)
.|+.||+|||||.+|+++|...+.+++|+++|+.++ .+-|+|+|- ...+. |... .+.-| -+|+++|||-.
T Consensus 2 VLL~GppG~GKT~l~~~lA~~~~~~~~~i~~~~~~~---~~Dl~G~~~--~~~~~-~~~~--~~~G~l~~~vl~lDEin~ 73 (131)
T pfam07726 2 VLLEGVPGLAKTLLARTLARSLGLDFRRIQFTPDLL---PSDITGTEV--YDQKT-REFE--FRPGPIFANVLLADEINR 73 (131)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC---CCCCCCCEE--ECCCC-CEEE--EECCCCCCCCEEEEHHHC
T ss_conf 878989987699999999999599816888337767---000368454--23787-4089--845731037056401203
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCEECCC-CEEEEEECCC
Q ss_conf 02899999999877750217799776125-4299994242
Q gi|254780163|r 588 SHPDVLNILLQIMDYGILTDQSGKKISFR-NVILIMTTNA 626 (798)
Q Consensus 588 Ah~~v~~~llqild~G~ltd~~Gr~vdf~-n~iii~TsN~ 626 (798)
|+|+|++.||+++++.+++- .|.++.+. ++.+|.|+|=
T Consensus 74 a~~~v~~~Ll~~l~er~v~~-~g~~~~~p~~f~viAt~NP 112 (131)
T pfam07726 74 APPKTQSALLEAMQERQVTI-GGETHPLPEPFFVLATQNP 112 (131)
T ss_pred CCHHHHHHHHHHHHCEEEEE-CCEEEECCCCEEEEECCCC
T ss_conf 99899999997632649977-9988527998499971698
No 66
>CHL00176 ftsH cell division protein; Validated
Probab=99.32 E-value=5.6e-11 Score=98.03 Aligned_cols=162 Identities=30% Similarity=0.426 Sum_probs=107.5
Q ss_pred HHHHHCHHHHHHHHHHHHHHHHCCCCCCCC--------CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCC
Q ss_conf 466534589999999998775204456578--------740688614320038899999873047733772068861246
Q gi|254780163|r 476 GTVVYGQEEAIKKLSSSIKIARAGLSDPNK--------PIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERH 547 (798)
Q Consensus 476 ~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~r--------P~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~ 547 (798)
-+-|.|+++|.+.+.+.+-- |++|.| |-| .||+||+|+|||.|||++|-..+.+|+.+.-|||.|.
T Consensus 176 F~DVaG~~eaK~el~Eivdf----Lk~P~k~~~~Gak~PkG-vLL~GpPGTGKTlLAkAvAgEa~vpF~~~sgs~F~e~- 249 (631)
T CHL00176 176 FNDVAGVEEAKEELEEVVTF----LKKPERFTAVGAKIPKG-VLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM- 249 (631)
T ss_pred CCCCCCCHHHHHHHHHHHHH----HCCHHHHHHCCCCCCCE-EEEECCCCCCHHHHHHHHHCCCCCCEEEEEHHHHHHH-
T ss_conf 53228858999999999998----35958876449968965-8988989987889999985655884699883785564-
Q ss_pred CCCHHCCCCCHHCCCCCC--CCCCHHHHHCCCEEEEECCHHH-----------CCH---HHHHHHHHHHHHHHCCCCCCC
Q ss_conf 530110478000256444--3100355515851777404455-----------028---999999998777502177997
Q gi|254780163|r 548 AVSRLIGAPPGYVGFGQG--GILADSVDQNPYSVVLLDEIEK-----------SHP---DVLNILLQIMDYGILTDQSGK 611 (798)
Q Consensus 548 ~vs~LiGappGYvG~~eg--g~Lte~vr~~P~sVvl~DEiEK-----------Ah~---~v~~~llqild~G~ltd~~Gr 611 (798)
|||-+.. -.|.+.-|++.-|||++|||+- .|. ..+|-||-=|| |.= .+
T Consensus 250 -----------~vGvga~rVR~LF~~Ar~~aP~IiFIDEiDaig~~Rg~~~~gg~~e~e~tlnqLL~emD-Gf~-~~--- 313 (631)
T CHL00176 250 -----------FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGVGGGNDEREQTLNQLLTEMD-GFE-GN--- 313 (631)
T ss_pred -----------HCCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHC-CCC-CC---
T ss_conf -----------21555899999999998639969998710120114789888985089999999999842-888-78---
Q ss_pred EECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 761254299994242145533036898821114889999987288788177682896288999999999999999
Q gi|254780163|r 612 KISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIM 686 (798)
Q Consensus 612 ~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~ 686 (798)
.+.|+|..+|--- ...++| .|| +|+|..|....-+......|+..+++
T Consensus 314 ----~gViViaATNrpd-----------------~LDpAL---lRP---GRFDR~I~V~lPD~~gR~~IL~vh~k 361 (631)
T CHL00176 314 ----KGVIVIAATNRID-----------------ILDAAL---LRP---GRFDRQVTVSLPDFEGRLDILKVHAR 361 (631)
T ss_pred ----CCEEEEEECCCCC-----------------CCCHHH---CCC---CCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf ----8869998258855-----------------456866---268---87754998269898999999999970
No 67
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=6.2e-11 Score=97.72 Aligned_cols=214 Identities=21% Similarity=0.251 Sum_probs=143.9
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCE-EEECCCCCHHHHHHHHHHHHHHCCCCCHH-----------H-H--
Q ss_conf 8877548611222178999999998622677874-89667641166899999999854898834-----------5-2--
Q gi|254780163|r 195 TEKVKKGKVDILVGRHEEINRTIQILCRRSKNNP-LYVGDPGVGKTAIAEGFAKQIVDGMVPDI-----------L-L-- 259 (798)
Q Consensus 195 Te~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~-~lvG~~gvGktaive~la~~i~~~~vp~~-----------l-~-- 259 (798)
..+-|=-.++-|||-+.-++.+-..+...+=.+. ++.|++|+|||+.+.-||+.+.-.+-|.. + .
T Consensus 7 a~KYRP~~F~dvvGQe~vv~~L~nai~~~rl~HAyLFsGprG~GKTt~ArilAk~LnC~~~~~~~PCg~C~sC~~i~~g~ 86 (560)
T PRK06647 7 ATKRRPRDFNSLEGQDFVVETLKHSIEKNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTIMPCGECFSCKSIDNDS 86 (560)
T ss_pred HHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf 76428986544039499999999999749977436632899878999999999996599999988887887888874599
Q ss_pred EEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCC---C-CEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHC--CCC
Q ss_conf 014455404675306343123789999999872038---9-8399973616630155444344777888876630--266
Q gi|254780163|r 260 GARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESY---A-NAILYIDEIHTLVGAGSASGISVDASNLLKPALS--SGA 333 (798)
Q Consensus 260 ~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~---~-~~ilfideih~ligag~~~g~~~d~an~lkP~L~--rg~ 333 (798)
..-++++|.+ +-+|- +-++.+++.+.-. + --|..|||.|+| +.+|+|-|.-.|. -..
T Consensus 87 ~~DviEidaa------sn~~V--ddIR~l~e~v~~~P~~~~yKV~IIDEahmL---------t~~A~NALLKtLEEPP~~ 149 (560)
T PRK06647 87 SLDVIEIDGA------SNTSV--QDVRQIKEEIMFPPASSRYRVYIIDEVHML---------SNSAFNALLKTIEEPPPY 149 (560)
T ss_pred CCCEEEECCC------CCCCH--HHHHHHHHHHCCCCCCCCEEEEEECCHHHC---------CHHHHHHHHHHHHCCCCC
T ss_conf 9875764364------54888--999999998632876687069996465655---------999999999986348875
Q ss_pred EEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCH
Q ss_conf 03887304899999852011143200144306878689999998612766541035121117899999865420155564
Q gi|254780163|r 334 VRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLP 413 (798)
Q Consensus 334 ~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lP 413 (798)
..+|-+||.. +|... ..-.|-|.......+.++-..-|+.+... -++.|.++||...++.|.-=+.|
T Consensus 150 ~~FILaTte~--~KI~~---TI~SRCQ~f~Fk~i~~~~I~~~L~~I~~~----E~i~~e~~AL~lIa~~a~Gs~RD---- 216 (560)
T PRK06647 150 IVFIFATTEV--HKLPA---TIKSRCQHFNFRLLSLEKIYEMLKKVCLE----DDIKYEDEALKWIAYKSGGSVRD---- 216 (560)
T ss_pred EEEEEECCCH--HHCHH---HHHHHHEEEECCCCCHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHCCCCHHH----
T ss_conf 5999977994--76848---99965104105559999999999999986----79887999999999977895888----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 67988998653333211443221136578999866
Q gi|254780163|r 414 DKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTI 448 (798)
Q Consensus 414 dkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~ 448 (798)
|..+||.+-|.. ...|+.++|.+.+
T Consensus 217 --alslldq~i~~~--------~~~i~~~~v~~~l 241 (560)
T PRK06647 217 --AYTLFDQIVSFS--------NSDITLEQIRSKM 241 (560)
T ss_pred --HHHHHHHHHHCC--------CCCCCHHHHHHHH
T ss_conf --999999999607--------9977899999986
No 68
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.32 E-value=2e-09 Score=86.93 Aligned_cols=228 Identities=21% Similarity=0.297 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHHHHHHH----CCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHH----------H
Q ss_conf 22217899999999862----267787489667641166899999999854898834520144554046----------7
Q gi|254780163|r 205 ILVGRHEEINRTIQILC----RRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMG----------N 270 (798)
Q Consensus 205 PVIGRd~EI~riiqIL~----RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~----------~ 270 (798)
-+.|||+|++++...|. -..-+|.++.|+||+|||+.|..+...+.+... +..++.+|-. .
T Consensus 31 ~l~~Re~Ei~~l~~~l~~~l~g~~~~n~~I~G~pGTGKT~~vk~v~~~l~~~~~-----~~~~vyINc~~~~t~~~i~~~ 105 (394)
T PRK00411 31 NLPHREEQIEELAFALRPALRGSRPSNVLILGPPGTGKTTTVKKVFEELEEAAL-----KVVYVYINCQIDRTRYAILSE 105 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC-----CCEEEEEECCCCCCHHHHHHH
T ss_conf 898859999999999999975999984799889999899999999999997468-----965999969668989999999
Q ss_pred H---HCCCC--CCCH-HHHHHHHHHHHHCCCCC-EEEEECCHHHHHCCCCCCCCCCCHHHHHH-H-HHCCCCEEEEEECC
Q ss_conf 5---30634--3123-78999999987203898-39997361663015544434477788887-6-63026603887304
Q gi|254780163|r 271 L---IAGTR--YRGD-FEERIKKIVKEIESYAN-AILYIDEIHTLVGAGSASGISVDASNLLK-P-ALSSGAVRCIGSTT 341 (798)
Q Consensus 271 l---~ag~~--~rg~-fe~r~~~~~~~~~~~~~-~ilfideih~ligag~~~g~~~d~an~lk-P-~L~rg~~~~IgatT 341 (798)
+ +-|.+ .+|- +.+-+..+.+.+.+.+. +|+.+||+..|+ ...+.. -.=+++. | .+..-.+-+||.+.
T Consensus 106 i~~~L~~~~~p~~G~s~~~~~~~l~~~l~~~~~~~ivvLDEiD~L~---~~~~~~-vLY~L~r~~~~~~~~~~~vI~IsN 181 (394)
T PRK00411 106 IARSLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLV---EKEGND-VLYSLLRAHEEYPGARIGVIGISS 181 (394)
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCC---CCCCCH-HHHHHHHCCCCCCCCCEEEEEEEC
T ss_conf 9999569989877878999999999986166975899996554020---366508-999998540226887389999976
Q ss_pred HHHHHHHHHCCHHHHHHC--EEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 899999852011143200--144306878689999998612766541035121117899999865420155564679889
Q gi|254780163|r 342 YSEYRQFFEKDKALVRRF--QKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDV 419 (798)
Q Consensus 342 ~~ey~~~~e~d~al~rrF--~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidl 419 (798)
.-.+...+ |+.+..|| +.|.-.+=+.++-..||..-.. +.++.=.++++||..++.++++==-| --||||+
T Consensus 182 ~~~~~~~L--dprv~S~l~~~~i~F~PY~~~qL~~IL~~R~~--~af~~gv~~~~~i~~~A~~~a~~~GD---aR~Aldl 254 (394)
T PRK00411 182 DLTFLYIL--DPRVKSVFGPEEIVFPPYTADEIFDILKDRVE--EGFYPGVVSDEVLELIADLTGREHGD---ARVAIDL 254 (394)
T ss_pred CCCHHHHH--HHHHHCCCCCEEEEECCCCHHHHHHHHHHHHH--HCCCCCCCCHHHHHHHHHHHHHCCCC---HHHHHHH
T ss_conf 87177664--07775027862898589998999999999998--41455678978999999998550475---8999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 986533332114432211365789998663102
Q gi|254780163|r 420 IDEAGASQILQPLSKRRKFITEKDIKKTIASMN 452 (798)
Q Consensus 420 lDea~a~~~~~~~~~~~~~~~~~~i~~~~~~~~ 452 (798)
|-.|+-.+. .+....|+.++|..+.....
T Consensus 255 lr~A~e~Ae----~~g~~~Vt~~hV~~A~~~~~ 283 (394)
T PRK00411 255 LRRAGEIAE----REGSRKVTEEDVRKAYEKSE 283 (394)
T ss_pred HHHHHHHHH----HHCCCCCCHHHHHHHHHHHH
T ss_conf 999999999----71899658999999999860
No 69
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.32 E-value=6.1e-11 Score=97.79 Aligned_cols=125 Identities=28% Similarity=0.474 Sum_probs=87.9
Q ss_pred HHHHCHHHHHHHHHHHHHH-------HHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCC
Q ss_conf 6653458999999999877-------520445657874068861432003889999987304773377206886124653
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKI-------ARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAV 549 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~-------~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~v 549 (798)
+-|.|+++|.+.+.+.+.- .+.|-+- |-|+ ||.||+|+|||.|||++|-..+.+|+.+..|||.|.
T Consensus 152 ~DVaG~~eaK~el~EiVdfLk~P~k~~~~Gak~---PkGv-LL~GPPGtGKTlLAkAvAgEa~vpF~~~sgsef~e~--- 224 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKI---PKGV-LMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM--- 224 (644)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCC---CCCE-EEECCCCCCHHHHHHHHHCCCCCEEEEEEHHHHHHE---
T ss_conf 040897899999999999812979999749979---9851-777989987789999986455980899784773022---
Q ss_pred CHHCCCCCHHCCCCCCC--CCCHHHHHCCCEEEEECCHHH-----------CCH---HHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 01104780002564443--100355515851777404455-----------028---99999999877750217799776
Q gi|254780163|r 550 SRLIGAPPGYVGFGQGG--ILADSVDQNPYSVVLLDEIEK-----------SHP---DVLNILLQIMDYGILTDQSGKKI 613 (798)
Q Consensus 550 s~LiGappGYvG~~egg--~Lte~vr~~P~sVvl~DEiEK-----------Ah~---~v~~~llqild~G~ltd~~Gr~v 613 (798)
|||-+..- .|.+.-|++.-|||++|||+- .|. .++|-||-=|| |.-+ +.
T Consensus 225 ---------~vGvga~rVR~lF~~Ar~~aP~IIFIDEiDaig~~R~~~~~gg~~e~~~tlNqlL~EmD-Gf~~-~~---- 289 (644)
T PRK10733 225 ---------FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMD-GFEG-NE---- 289 (644)
T ss_pred ---------EEECCHHHHHHHHHHHHHCCCEEEEEECHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCC-CC----
T ss_conf ---------25306899999999999669979999532203666789888983288878999999954-8888-78----
Q ss_pred CCCCEEEEEECCC
Q ss_conf 1254299994242
Q gi|254780163|r 614 SFRNVILIMTTNA 626 (798)
Q Consensus 614 df~n~iii~TsN~ 626 (798)
+.|+|..+|-
T Consensus 290 ---~ViviaATNr 299 (644)
T PRK10733 290 ---GIIVIAATNR 299 (644)
T ss_pred ---CEEEEEECCC
T ss_conf ---7699962699
No 70
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.3e-10 Score=95.41 Aligned_cols=145 Identities=28% Similarity=0.448 Sum_probs=87.1
Q ss_pred HCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCC----HHH
Q ss_conf 2044565787406886143200388999998730477337720688612465301104780002564443100----355
Q gi|254780163|r 497 RAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILA----DSV 572 (798)
Q Consensus 497 ~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lt----e~v 572 (798)
+.|+.+| -|++|+ ||+|+|||.|||++|-...-.|||+--||+-.+ |+| ||..|. +--
T Consensus 179 ~~GI~PP---KGVLLY-GPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqK------------YiG--EGaRlVRelF~lA 240 (406)
T COG1222 179 ELGIDPP---KGVLLY-GPPGTGKTLLAKAVANQTDATFIRVVGSELVQK------------YIG--EGARLVRELFELA 240 (406)
T ss_pred HCCCCCC---CCEEEE-CCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHH------------HHC--CCHHHHHHHHHHH
T ss_conf 7499999---712766-899975889999987205866999421999999------------834--1169999999987
Q ss_pred HHCCCEEEEECCHHH-----------CCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCC
Q ss_conf 515851777404455-----------028999999998777502177997761254299994242145533036898821
Q gi|254780163|r 573 DQNPYSVVLLDEIEK-----------SHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSS 641 (798)
Q Consensus 573 r~~P~sVvl~DEiEK-----------Ah~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~ 641 (798)
|.+--|+|++|||+- +..+|+..+||+|-+=-=.|.. .|.-|||.+|=-
T Consensus 241 rekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~------~nvKVI~ATNR~-------------- 300 (406)
T COG1222 241 REKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR------GNVKVIMATNRP-------------- 300 (406)
T ss_pred HHCCCEEEEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC------CCEEEEEECCCC--------------
T ss_conf 414984999831122311113688885099999999999860588978------876899855885--------------
Q ss_pred CCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 11488999998728878817768289628899999999999999999
Q gi|254780163|r 642 RNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKL 688 (798)
Q Consensus 642 ~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l 688 (798)
+...++ ..|| +|||..|-|-.-+.+.-.+|+.++-.+.
T Consensus 301 ---D~LDPA---LLRP---GR~DRkIEfplPd~~gR~~Il~IHtrkM 338 (406)
T COG1222 301 ---DILDPA---LLRP---GRFDRKIEFPLPDEEGRAEILKIHTRKM 338 (406)
T ss_pred ---CCCCHH---HCCC---CCCCCEEECCCCCHHHHHHHHHHHHHHC
T ss_conf ---555766---5088---7545301168989789999999876214
No 71
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.31 E-value=6.4e-10 Score=90.43 Aligned_cols=194 Identities=24% Similarity=0.360 Sum_probs=136.6
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCC
Q ss_conf 88775486112221789999999986226778748966764116689999999985489883452014455404675306
Q gi|254780163|r 195 TEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAG 274 (798)
Q Consensus 195 Te~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag 274 (798)
+++-|=.++|-++|-+.-++++...+...+-.|-++-|+||+|||+++.-||..+...... ..+++++.+.
T Consensus 7 ~eKYRP~~l~di~g~~~~~~~L~~~i~~~~~phlLf~GppG~GKTt~a~~la~~l~~~~~~-----~~~lelnasd---- 77 (318)
T PRK00440 7 VEKYRPRSLDEVVGQEEIVERLKSFVKEKNMPHLLFAGPPGTGKTTAALALARELYGEYWR-----ENFLELNASD---- 77 (318)
T ss_pred HHCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC-----CCEEEECCCC----
T ss_conf 4601989899941969999999999987998669888959988999999999997698643-----4768951645----
Q ss_pred CCCCC--HHHHHHHHHHHHHC--CCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCC--CCEEEEEECCHHHHHHH
Q ss_conf 34312--37899999998720--38983999736166301554443447778888766302--66038873048999998
Q gi|254780163|r 275 TRYRG--DFEERIKKIVKEIE--SYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSS--GAVRCIGSTTYSEYRQF 348 (798)
Q Consensus 275 ~~~rg--~fe~r~~~~~~~~~--~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~r--g~~~~IgatT~~ey~~~ 348 (798)
.|| ...++++....... ..+.-|++|||+|.+ +.++.|-|...|.. ...++|-.|+. +.+.
T Consensus 78 --~r~id~vr~~i~~~~~~~~~~~~~~kiiiiDE~d~l---------~~~aq~aL~~~mE~~~~~~~fil~~n~--~~ki 144 (318)
T PRK00440 78 --ERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNL---------TSDAQQALRRTMEMYSQTTRFILSCNY--SSKI 144 (318)
T ss_pred --CCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC---------CHHHHHHHHHHHHCCCCCCEEEEECCC--CCCC
T ss_conf --667178999999999726778997389998685532---------255678887643105666258863488--3337
Q ss_pred HHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 520111432001443068786899999986127665410351211178999998654201555646798899865
Q gi|254780163|r 349 FEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEA 423 (798)
Q Consensus 349 ~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea 423 (798)
+ +++-.|.+.+....|+.++....|+.+.. ..++.++++++...+..|.-= -.+||.+|..+
T Consensus 145 i---~~i~SRc~~i~f~~~~~~~i~~~L~~I~~----~E~i~~~~~~l~~i~~~s~gd------lR~ain~Lq~~ 206 (318)
T PRK00440 145 I---DPIQSRCAVFRFSPLPKEAVIERLRYIAK----NEGLEITDDALEAIYYVSEGD------MRKAINALQAA 206 (318)
T ss_pred C---CCHHHHHEEEECCCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHCCCC------HHHHHHHHHHH
T ss_conf 6---15565510111578999999999999999----859998999999999864998------99999999999
No 72
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=6.7e-11 Score=97.47 Aligned_cols=200 Identities=23% Similarity=0.257 Sum_probs=138.5
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCE-EEECCCCCHHHHHHHHHHHHHHCCCCCHH------------HHE
Q ss_conf 58877548611222178999999998622677874-89667641166899999999854898834------------520
Q gi|254780163|r 194 LTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNP-LYVGDPGVGKTAIAEGFAKQIVDGMVPDI------------LLG 260 (798)
Q Consensus 194 LTe~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~-~lvG~~gvGktaive~la~~i~~~~vp~~------------l~~ 260 (798)
|..+-|-..+|-|||-+.-++.+-+.+.+.+=.+. ++.|++|||||+.+.-+|+.+...+-+.. ..+
T Consensus 5 LyrkyRP~~F~dvvGQe~i~~~L~nal~~~ri~HAyLF~GP~GtGKts~ArifAkaLnC~~~~~~~pC~~C~~C~~i~~g 84 (557)
T PRK07270 5 LYRKYRSQTFDEMVGQEVVATTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNNCDICRDITNG 84 (557)
T ss_pred HHHHHCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 67660899876714819999999999985995404421089986899999999999579998999988877799998758
Q ss_pred --EEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCC----CCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHC--CC
Q ss_conf --14455404675306343123789999999872038----98399973616630155444344777888876630--26
Q gi|254780163|r 261 --ARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESY----ANAILYIDEIHTLVGAGSASGISVDASNLLKPALS--SG 332 (798)
Q Consensus 261 --~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~----~~~ilfideih~ligag~~~g~~~d~an~lkP~L~--rg 332 (798)
..++++|. ++-+|- +.++.+.+.+.-. +--|..|||.|+| +.+|+|-|.-.|. ..
T Consensus 85 ~~~DviEida------as~~gV--d~IRei~~~~~~~P~~~~yKV~IIDEah~L---------s~~A~NALLKtLEEPP~ 147 (557)
T PRK07270 85 SLEDVIEIDA------ASNNGV--DEIRDIRDKSTYAPSRATYKVYIIDEVHML---------STGAFNALLKTLEEPTE 147 (557)
T ss_pred CCCCEEEECC------CCCCCH--HHHHHHHHHHCCCCCCCCEEEEEECCHHHC---------CHHHHHHHHHHHHCCCC
T ss_conf 9997487347------776788--999999998423877788389997144534---------99999989998528998
Q ss_pred CEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCC
Q ss_conf 60388730489999985201114320014430687868999999861276654103512111789999986542015556
Q gi|254780163|r 333 AVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKL 412 (798)
Q Consensus 333 ~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~l 412 (798)
...+|-+||..+ |.. +.+-.|-|+..-..-+.++-+.-|+.+.. --++.|.++||..+++.|.-=+.
T Consensus 148 ~~vFIL~Ttep~--kIl---~TI~SRCQrf~F~~i~~~~i~~~L~~I~~----~E~i~~~~~aL~~Ia~~a~G~mR---- 214 (557)
T PRK07270 148 NVVFILATTELH--KIP---ATILSRVQRFEFKSIKTKAIREHLAWILD----KEGISFEVEALNLIARRAEGGMR---- 214 (557)
T ss_pred CEEEEEEECCHH--HCC---HHHHHHHHHCCCCCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHCCCCHH----
T ss_conf 769999849947--592---88874300010888999999999999999----83998699999999997799687----
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 4679889986533
Q gi|254780163|r 413 PDKAIDVIDEAGA 425 (798)
Q Consensus 413 PdkAidllDea~a 425 (798)
.|+.+||.+-|
T Consensus 215 --dAlsiLdQ~~s 225 (557)
T PRK07270 215 --DALSILDQALS 225 (557)
T ss_pred --HHHHHHHHHHH
T ss_conf --89999999997
No 73
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=1.9e-10 Score=94.26 Aligned_cols=213 Identities=23% Similarity=0.335 Sum_probs=140.3
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCE-EEECCCCCHHHHHHHHHHHHHHCCCCCHH-----------HHE---
Q ss_conf 877548611222178999999998622677874-89667641166899999999854898834-----------520---
Q gi|254780163|r 196 EKVKKGKVDILVGRHEEINRTIQILCRRSKNNP-LYVGDPGVGKTAIAEGFAKQIVDGMVPDI-----------LLG--- 260 (798)
Q Consensus 196 e~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~-~lvG~~gvGktaive~la~~i~~~~vp~~-----------l~~--- 260 (798)
.+-|--.++-|||-+.-++.+-.-+...+=... ++.|++|||||+.+--+|+-+.-.+-|.. +.+
T Consensus 8 rkyRP~~F~dvvGQ~~v~~~L~nai~~~ri~HAyLF~GprGtGKts~Ari~AkaLnC~~~~~~~pC~~C~~C~~i~~g~~ 87 (563)
T PRK06674 8 RVFRPQKFEDVVGQEHVTKTLQNALLQEKVSHAYLFSGPRGTGKTSIAKVFAKAVNCEHAPVAEPCNECPSCLGITNGSI 87 (563)
T ss_pred HHHCCCCHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCC
T ss_conf 76389976552480999999999998499650343128998689999999999857999999887766878999855899
Q ss_pred EEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCC---CC-CEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCC--CCE
Q ss_conf 1445540467530634312378999999987203---89-83999736166301554443447778888766302--660
Q gi|254780163|r 261 ARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIES---YA-NAILYIDEIHTLVGAGSASGISVDASNLLKPALSS--GAV 334 (798)
Q Consensus 261 ~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~---~~-~~ilfideih~ligag~~~g~~~d~an~lkP~L~r--g~~ 334 (798)
.-++++|.++ -+|- +.++.+.+.+.- .+ --|..|||.|+| +.+|+|-|.-.|.. ...
T Consensus 88 ~DviEiDaas------n~gV--d~IR~i~~~v~~~P~~~~yKV~IIDeah~L---------t~~A~NALLKtLEEPP~~v 150 (563)
T PRK06674 88 SDVLEIDAAS------NNGV--DEIRDIRDKVKFAPSAVEYKVYIIDEVHML---------SIGAFNALLKTLEEPPGHV 150 (563)
T ss_pred CCEEEECCCC------CCCH--HHHHHHHHHHCCCCCCCCEEEEEEECHHHC---------CHHHHHHHHHHHHCCCCCE
T ss_conf 8779852555------5787--999999998264886787379998545637---------9999999999863887564
Q ss_pred EEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 38873048999998520111432001443068786899999986127665410351211178999998654201555646
Q gi|254780163|r 335 RCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPD 414 (798)
Q Consensus 335 ~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPd 414 (798)
.+|-+||..+ |. -+..-.|-|+....--+.++-+.-|+.+.. .-++.|.++||...++.|.-=+.|
T Consensus 151 iFILaTtep~--ki---~~TI~SRCQrf~F~ri~~~~i~~rL~~I~~----~E~i~~~~~aL~~Ia~~a~GsmRD----- 216 (563)
T PRK06674 151 IFILATTEPH--KI---PPTIISRCQRFDFRRISVNDIVERLSTVVT----NEGTQVEDEALQIIARAADGGMRD----- 216 (563)
T ss_pred EEEEECCCHH--HC---CHHHHHHHEEEECCCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHCCCCHHH-----
T ss_conf 9999659947--58---478873310312788999999999999999----849998788999999976997889-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 7988998653333211443221136578999866
Q gi|254780163|r 415 KAIDVIDEAGASQILQPLSKRRKFITEKDIKKTI 448 (798)
Q Consensus 415 kAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~ 448 (798)
|+.+||.+-|.. ...|+.+++..++
T Consensus 217 -AlsiLdQ~~s~~--------~~~i~~~~v~~~l 241 (563)
T PRK06674 217 -ALSLLDQAISFS--------DERVTTEDVLAVT 241 (563)
T ss_pred -HHHHHHHHHHHC--------CCCCCHHHHHHHH
T ss_conf -999999999715--------9976899999986
No 74
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=7.7e-11 Score=97.05 Aligned_cols=202 Identities=22% Similarity=0.292 Sum_probs=139.1
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC-EEEECCCCCHHHHHHHHHHHHHHCCCCCH--HH-----------
Q ss_conf 25887754861122217899999999862267787-48966764116689999999985489883--45-----------
Q gi|254780163|r 193 DLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNN-PLYVGDPGVGKTAIAEGFAKQIVDGMVPD--IL----------- 258 (798)
Q Consensus 193 DLTe~AreGKLDPVIGRd~EI~riiqIL~RR~KNn-~~lvG~~gvGktaive~la~~i~~~~vp~--~l----------- 258 (798)
.|..+-|-..+|-|||-+.-++.+...+.+.+=.+ -++.|++|||||+++..+|..+...+.+. ..
T Consensus 5 alyrKYRPk~F~eIIGQe~iv~~L~nAI~~~RiaHAYLFsGPrGvGKTTlArifAkaLnC~~~~~~dpCg~C~sC~~I~~ 84 (613)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINT 84 (613)
T ss_pred CHHHHCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 12450179976552382999999999998499762277558998488999999999966999999998888878999856
Q ss_pred -HEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCC----CCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCC--
Q ss_conf -2014455404675306343123789999999872038----983999736166301554443447778888766302--
Q gi|254780163|r 259 -LGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESY----ANAILYIDEIHTLVGAGSASGISVDASNLLKPALSS-- 331 (798)
Q Consensus 259 -~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~----~~~ilfideih~ligag~~~g~~~d~an~lkP~L~r-- 331 (798)
...-++++|.+ +.+| =+.++.+++.+.-. +.-|..|||.|+| +..|+|-|.-.|.-
T Consensus 85 g~h~DviEIdaa------sn~g--IDeIReLie~~~~~P~~gkyKV~IIDEah~L---------n~~AaNALLKtLEEPP 147 (613)
T PRK05896 85 NQSVDIVELDAA------SNNG--VDEIRNIIDNINYLPTTFKYKVYIIDEAHML---------STSAWNALLKTLEEPP 147 (613)
T ss_pred CCCCCEEEEECC------CCCC--HHHHHHHHHHHCCCCCCCCCEEEEECCHHHC---------CHHHHHHHHHHCCCCC
T ss_conf 999986884065------5578--8999999997085875799459998162217---------9999999998534898
Q ss_pred CCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCC
Q ss_conf 66038873048999998520111432001443068786899999986127665410351211178999998654201555
Q gi|254780163|r 332 GAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRK 411 (798)
Q Consensus 332 g~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~ 411 (798)
....+|-+||..+ +. =+..-.|-|+....-.+.++-..-|+.+... -++.|.++||...++.|.-=+.|
T Consensus 148 ~~viFIL~Ttep~--KL---LpTIlSRCQrf~Fkri~~~~I~~~L~~I~~k----E~i~ie~~AL~~Ia~~adGs~RD-- 216 (613)
T PRK05896 148 KHVVFIFATTEFQ--KI---PLTIISRCQRYNFKKLNNSELQELLKSIAKK----EKIKIEDNAIDKIADLADGSLRD-- 216 (613)
T ss_pred CCCEEEEEECCHH--HC---CHHHHHCCCCEECCCCCHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHCCCCHHH--
T ss_conf 7837999828815--49---3766403550017889989999999999997----39987899999999976884878--
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 646798899865333
Q gi|254780163|r 412 LPDKAIDVIDEAGAS 426 (798)
Q Consensus 412 lPdkAidllDea~a~ 426 (798)
|..+||.+.+.
T Consensus 217 ----AlslLdQ~~~~ 227 (613)
T PRK05896 217 ----GLSILDQLSTF 227 (613)
T ss_pred ----HHHHHHHHHHH
T ss_conf ----98899999983
No 75
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.30 E-value=2.3e-10 Score=93.60 Aligned_cols=224 Identities=21% Similarity=0.332 Sum_probs=147.5
Q ss_pred HCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC----CCCEEEEEHHHHHCC
Q ss_conf 0000246653458999999999877520445657874068861432003889999987304----773377206886124
Q gi|254780163|r 471 LEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL----GVQLLRFDMSEYMER 546 (798)
Q Consensus 471 l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~----~~~lir~dmsey~e~ 546 (798)
+.......+||.+.+...+.+.+++ +.+.+.| .|..|+||+||+-.|..+.+.+ +.+||.|||+.|.+.
T Consensus 72 ~~~~~~~~LIG~~~~~~~~~eqik~----~ap~~~~---vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en 144 (403)
T COG1221 72 LKSEALDDLIGESPSLQELREQIKA----YAPSGLP---VLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSEN 144 (403)
T ss_pred CCCHHHHHHHCCCHHHHHHHHHHHH----HCCCCCC---EEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCC
T ss_conf 0221566663568889999999986----1899984---79866887538899999998612135898799777773767
Q ss_pred CCCCHHCCCCCH-HCC--CCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCC---CCCCCEECCCCEEE
Q ss_conf 653011047800-025--644431003555158517774044550289999999987775021---77997761254299
Q gi|254780163|r 547 HAVSRLIGAPPG-YVG--FGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILT---DQSGKKISFRNVIL 620 (798)
Q Consensus 547 ~~vs~LiGappG-YvG--~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~lt---d~~Gr~vdf~n~ii 620 (798)
.--+.|.|--.| |-| ++..|.+-. ---..+++|||--.-|.++..||+++|+|.++ +.+.+.+|++ +
T Consensus 145 ~~~~eLFG~~kGaftGa~~~k~Glfe~----A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVR---l 217 (403)
T COG1221 145 LQEAELFGHEKGAFTGAQGGKAGLFEQ----ANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVR---L 217 (403)
T ss_pred HHHHHHHCCCCCEEECCCCCCCCHHEE----CCCCEEEHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCE---E
T ss_conf 777777320000002566786764205----279777656365379858999999987186576688888677740---4
Q ss_pred EEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHC-CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 99424214553303689882111488999998728878817-76828962889999999999999999999998669889
Q gi|254780163|r 621 IMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLN-RLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISF 699 (798)
Q Consensus 621 i~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~pefln-Rid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l 699 (798)
|+-+|.-- .+.+.+- ..|.- |+..+|-.-||.+. ...|..+.--=+....++.++.+
T Consensus 218 i~AT~~~l-------------------~~~~~~g--~dl~~rl~~~~I~LPpLrER-~~Di~~L~e~Fl~~~~~~l~~~~ 275 (403)
T COG1221 218 ICATTEDL-------------------EEAVLAG--ADLTRRLNILTITLPPLRER-KEDILLLAEHFLKSEARRLGLPL 275 (403)
T ss_pred EECCCCCH-------------------HHHHHHH--CCHHHHHCCCEECCCCHHHC-HHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 51356687-------------------9998740--52556416754318972435-55599999999999999739998
Q ss_pred EECH-HHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9988-99999997189810153267999998623
Q gi|254780163|r 700 HFSE-EVINWLVSHGYDVKMGARPLERIIKEHVK 732 (798)
Q Consensus 700 ~~~~-~~~~~l~~~~~~~~~GAR~l~r~i~~~i~ 732 (798)
.... .+...|.. |+-.---|.|+..|+.-+.
T Consensus 276 ~~~~~~a~~~L~~--y~~pGNirELkN~Ve~~~~ 307 (403)
T COG1221 276 SVDSPEALRALLA--YDWPGNIRELKNLVERAVA 307 (403)
T ss_pred CCCCHHHHHHHHH--CCCCCCHHHHHHHHHHHHH
T ss_conf 8888999999984--8899839999999999999
No 76
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=9.8e-11 Score=96.29 Aligned_cols=215 Identities=22% Similarity=0.256 Sum_probs=146.2
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCE-EEECCCCCHHHHHHHHHHHHHHCCC-CCHH------------H-
Q ss_conf 58877548611222178999999998622677874-8966764116689999999985489-8834------------5-
Q gi|254780163|r 194 LTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNP-LYVGDPGVGKTAIAEGFAKQIVDGM-VPDI------------L- 258 (798)
Q Consensus 194 LTe~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~-~lvG~~gvGktaive~la~~i~~~~-vp~~------------l- 258 (798)
|..+-|=..++-|||-+.-++.+...+...+=.+. ++.|++|||||+++.-||+.+.-.+ .++. .
T Consensus 7 larKYRP~~F~dvVGQ~~vv~~L~nai~~~ri~HAyLF~GprGtGKTT~ArilAkaLnC~~~~~~~~pCg~C~~C~~I~~ 86 (462)
T PRK06305 7 SSRKYRPQTFSEILGQDAVVTVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAICKEISS 86 (462)
T ss_pred HHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 88763889876604909999999999984997623430389985999999999999679999888898876688899863
Q ss_pred -HEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCC---CCC-EEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHC--C
Q ss_conf -201445540467530634312378999999987203---898-399973616630155444344777888876630--2
Q gi|254780163|r 259 -LGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIES---YAN-AILYIDEIHTLVGAGSASGISVDASNLLKPALS--S 331 (798)
Q Consensus 259 -~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~---~~~-~ilfideih~ligag~~~g~~~d~an~lkP~L~--r 331 (798)
...-++++| +++.||= +.++.+++.+.- .++ -|..|||.|+| +-+|.|-|.-.|. -
T Consensus 87 g~~~DViEiD------aAs~~gV--ddIRel~e~v~~~P~~~~yKVyIIDEvhmL---------s~~AfNALLKtLEEPP 149 (462)
T PRK06305 87 GTSLDVIEID------GASHRGI--EDIRQINETVLFTPSKSQYKIYIIDEVHML---------TKEAFNSLLKTLEEPP 149 (462)
T ss_pred CCCCCEEEEC------CCCCCCH--HHHHHHHHHHCCCCCCCCEEEEEEECHHHC---------CHHHHHHHHHHHHCCC
T ss_conf 8999868643------5534466--899999977100886775059998152117---------9999999999861898
Q ss_pred CCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCC
Q ss_conf 66038873048999998520111432001443068786899999986127665410351211178999998654201555
Q gi|254780163|r 332 GAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRK 411 (798)
Q Consensus 332 g~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~ 411 (798)
....+|=+||..+ |.. +..-.|-|+......+.++-..-|+.+.. .-++.|.++||...++.|.-=+.|
T Consensus 150 ~~v~FILaTTe~~--KIp---~TIlSRCQrf~F~~i~~~~I~~~L~~I~~----~E~i~~e~~AL~lIA~~a~GsmRD-- 218 (462)
T PRK06305 150 QHVKFFLATTEIH--KIP---GTILSRCQKMHLKRIPEETIIDKLALIAQ----QDGIETSREALLPIARAAQGSLRD-- 218 (462)
T ss_pred CCEEEEEEECCHH--HCC---HHHHHHHHEEECCCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHCCCCHHH--
T ss_conf 7749999818814--285---47876540233257999999999999999----839985999999999985895878--
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 6467988998653333211443221136578999866
Q gi|254780163|r 412 LPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTI 448 (798)
Q Consensus 412 lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~ 448 (798)
|..+||.+-+.. ...|+.++|.+.+
T Consensus 219 ----AlslLDQ~i~~~--------~~~it~~~V~~~l 243 (462)
T PRK06305 219 ----AESLYDYVVGLF--------PKSLSPDTVAKAL 243 (462)
T ss_pred ----HHHHHHHHHHHC--------CCCCCHHHHHHHH
T ss_conf ----999999999847--------9986899999986
No 77
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=99.28 E-value=1.2e-11 Score=102.89 Aligned_cols=115 Identities=34% Similarity=0.524 Sum_probs=80.5
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCC---CCCCHHHHHCCCEEEEECCHH
Q ss_conf 88614320038899999873047733772068861246530110478000256444---310035551585177740445
Q gi|254780163|r 510 YVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQG---GILADSVDQNPYSVVLLDEIE 586 (798)
Q Consensus 510 flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~eg---g~Lte~vr~~P~sVvl~DEiE 586 (798)
.||.||+|+|||.+|+++|...+.+++.++++++.. .|+|..+. ..+.++-+.+| ||+++||+|
T Consensus 1 iLl~GppGtGKT~~a~~la~~~~~~~~~v~~~~~~~------------~~~g~~~~~i~~~f~~a~~~~p-~Il~iDe~d 67 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVS------------KYVGESEKRLRELFEAAKKLAP-CVIFIDEID 67 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCCCC------------CCCCHHHHHHHHHHHHHHHCCC-CEEEECHHH
T ss_conf 987899999999999999999789853324201222------------3345068889999999997499-189831167
Q ss_pred HCCH-----------HHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 5028-----------99999999877750217799776125429999424214553303689882111488999998728
Q gi|254780163|r 587 KSHP-----------DVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFL 655 (798)
Q Consensus 587 KAh~-----------~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f 655 (798)
.-.+ .+.+.||+.||. ...+..+.++|+|||-= ..+
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~ll~~ld~--------~~~~~~~v~~I~tTN~~-------------------------~~l 114 (131)
T pfam00004 68 ALAGSRGSGGDSESRRVVNQLLTELDG--------FTSSLSKVIVIAATNRP-------------------------DKL 114 (131)
T ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHH--------CCCCCCCEEEEEECCCH-------------------------HHC
T ss_conf 775167888887513268789999850--------22468876999975990-------------------------449
Q ss_pred CHHHH-CCCCEEEECC
Q ss_conf 87881-7768289628
Q gi|254780163|r 656 SPEFL-NRLDSIIPFF 670 (798)
Q Consensus 656 ~pefl-nRid~ii~F~ 670 (798)
.|+++ +|+|.+|.|-
T Consensus 115 d~al~r~Rfd~~i~~p 130 (131)
T pfam00004 115 DPALLRGRFDRIIEFP 130 (131)
T ss_pred CHHHHCCCCEEEEEEC
T ss_conf 9779628332899806
No 78
>KOG2028 consensus
Probab=99.28 E-value=1.9e-10 Score=94.29 Aligned_cols=397 Identities=20% Similarity=0.268 Sum_probs=201.8
Q ss_pred CCCHHHHHH-------HHHHHHHCCCCHHHHHHHHHHHH--HHHHH-HCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 530356544-------25887754861122217899999--99986-226778748966764116689999999985489
Q gi|254780163|r 184 FPALSAYCV-------DLTEKVKKGKVDILVGRHEEINR--TIQIL-CRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGM 253 (798)
Q Consensus 184 ~~~LdkFg~-------DLTe~AreGKLDPVIGRd~EI~r--iiqIL-~RR~KNn~~lvG~~gvGktaive~la~~i~~~~ 253 (798)
...|..+-. -|.+.+|-..||-++|-+.-+-+ ++.-| ---+=+..||-|+||+|||+|+.-+|.-- .
T Consensus 111 ~~~l~~~e~R~~~qh~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts---k 187 (554)
T KOG2028 111 KRALAAEEIRQMLQHKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS---K 187 (554)
T ss_pred CCHHHHHHHHHHHCCCCHHHHCCCCHHHHHCCHHHHCCCCHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHC---C
T ss_conf 2112048888775169745541843687750534414832689999870888705886699876588999998605---7
Q ss_pred CCHHHHEEEEEEEEHHHHHCCCC-CCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 88345201445540467530634-31237899999998720389839997361663015544434477788887663026
Q gi|254780163|r 254 VPDILLGARIFSLDMGNLIAGTR-YRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSG 332 (798)
Q Consensus 254 vp~~l~~~~i~~ld~~~l~ag~~-~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg 332 (798)
-+ -.++++++.. -|+++ .|+-||.- ++.... .....||||||||-.- ++ .-| ++.|....|
T Consensus 188 ~~----SyrfvelSAt--~a~t~dvR~ife~a-q~~~~l--~krkTilFiDEiHRFN---ks---QQD---~fLP~VE~G 249 (554)
T KOG2028 188 KH----SYRFVELSAT--NAKTNDVRDIFEQA-QNEKSL--TKRKTILFIDEIHRFN---KS---QQD---TFLPHVENG 249 (554)
T ss_pred CC----CEEEEEEECC--CCCHHHHHHHHHHH-HHHHHH--HCCEEEEEEHHHHHHH---HH---HHH---CCCCEECCC
T ss_conf 77----4279997414--56618899999998-878765--2440698737765532---32---110---034213067
Q ss_pred CEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHH---HH------HCCCEECCHHHHHHHHHH
Q ss_conf 603887304899999852011143200144306878689999998612766---54------103512111789999986
Q gi|254780163|r 333 AVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYF---EE------HHQLRYSKEAIRAAVQLS 403 (798)
Q Consensus 333 ~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~y---e~------~h~v~~~~~al~~av~ls 403 (798)
.|..|||||..- .|.-+.||-.|-.++.++...++.-..||+.-...+ |. +.-+.+.+.+|++.+.+|
T Consensus 250 ~I~lIGATTENP---SFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~ls 326 (554)
T KOG2028 250 DITLIGATTENP---SFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLS 326 (554)
T ss_pred CEEEEECCCCCC---CCCHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 069985366897---60112778731606673368889999999999876321025688999831245688999998704
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCHH
Q ss_conf 54201555646798899865333321144322113657899986631024531011100112334210000246653458
Q gi|254780163|r 404 VRHFTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQE 483 (798)
Q Consensus 404 ~ryi~~r~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~ 483 (798)
.-- -.-|..-|.-+.+..-.......+..++.+||.+.+..-. +---+.. +.-.+.-..|++.+-|-|
T Consensus 327 dGD------aR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s~--~~YDr~G----e~HYntISA~HKSmRG~D 394 (554)
T KOG2028 327 DGD------ARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSH--ILYDRAG----EEHYNTISALHKSMRGSD 394 (554)
T ss_pred CCH------HHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCC--CEECCCC----HHHHHHHHHHHHHHCCCC
T ss_conf 731------8888778999999887524776564002888999985312--0004553----057789999987601776
Q ss_pred H--HHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH-HHCCC------CEEEEEHHHHHCCCCCCHHCC
Q ss_conf 9--99999999877520445657874068861432003889999987-30477------337720688612465301104
Q gi|254780163|r 484 E--AIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLA-FALGV------QLLRFDMSEYMERHAVSRLIG 554 (798)
Q Consensus 484 ~--ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la-~~~~~------~lir~dmsey~e~~~vs~LiG 554 (798)
+ ++--+++- |....-|+ ..|+.|- |.+|+ +++..-.+-|+ ....+|
T Consensus 395 ~nAslY~LaRM-------LegGEdPL--------------YVARRlvR~ASEDIGlaD~S~L~~Avaa~q----av~~vG 449 (554)
T KOG2028 395 QNASLYWLARM-------LEGGEDPL--------------YVARRLVRFASEDIGLADPSALTQAVAAYQ----AVHFVG 449 (554)
T ss_pred CCHHHHHHHHH-------HCCCCCCH--------------HHHHHHHHHHHCCCCCCCCHHHHHHHHHHH----HHHHHC
T ss_conf 55279999999-------71688707--------------999999987510337678036688999988----888808
Q ss_pred CCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCC--CCEECCCCEEEEEECCCCHHHHH
Q ss_conf 7800025644431003555158517774044550289999999987775021779--97761254299994242145533
Q gi|254780163|r 555 APPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQS--GKKISFRNVILIMTTNAGALEMS 632 (798)
Q Consensus 555 appGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~--Gr~vdf~n~iii~TsN~G~~~~~ 632 (798)
-|-.-|=- -|.+-++.+.|-||-+.- | +|.+-.+|.+ .++. +--...|| +-...+.
T Consensus 450 mPE~dviL---AqC~v~lA~APKSievYr----a----~~~vka~ls~---~~~~~~~vPlHlRN--------APTkLMk 507 (554)
T KOG2028 450 MPECDVIL---AQCVVYLARAPKSIEVYR----A----YNAVKACLSN---HQGPLPEVPLHLRN--------APTKLMK 507 (554)
T ss_pred CCHHHHHH---HHHHHHHHHCCCHHHHHH----H----HHHHHHHHHC---CCCCCCCCCCHHHC--------CCHHHHH
T ss_conf 93588899---999999984863039999----9----9999999743---25788888730302--------7378999
Q ss_pred HCCCCCCCCC---CHHHHHHHHHHHCCHHHHCCCCE
Q ss_conf 0368988211---14889999987288788177682
Q gi|254780163|r 633 KARIGFGSSR---NDDADKEALRNFLSPEFLNRLDS 665 (798)
Q Consensus 633 ~~~~g~~~~~---~~~~~~~~l~~~f~peflnRid~ 665 (798)
+ +|++..- .+-.....-+.+|++|+++...+
T Consensus 508 e--LGY~KgYkYnPdy~~g~v~Qeylp~ell~~~~~ 541 (554)
T KOG2028 508 E--LGYGKGYKYNPDYISGPVDQEYLPEELLEKCPN 541 (554)
T ss_pred H--HCCCCCCCCCCCCCCCCCCHHHCCHHHHHHCCC
T ss_conf 8--376877557986655522044456999863655
No 79
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.28 E-value=8.8e-11 Score=96.65 Aligned_cols=223 Identities=22% Similarity=0.308 Sum_probs=111.0
Q ss_pred CCHHHHHHHHHHHHHHHHH---HCCCCC---CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCC
Q ss_conf 6112221789999999986---226778---7489667641166899999999854898834520144554046753063
Q gi|254780163|r 202 KVDILVGRHEEINRTIQIL---CRRSKN---NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGT 275 (798)
Q Consensus 202 KLDPVIGRd~EI~riiqIL---~RR~KN---n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~ 275 (798)
.++-.||-++-.+++ .|. +++++. ..+|-|+||.|||+++.=+|..+.. .+...+..++--
T Consensus 23 ~l~efiGQ~~i~~~L-~v~i~Aak~r~e~ldH~Ll~GPPGlGKTTLA~iiA~E~~~----------~~~~tsGP~lek-- 89 (328)
T PRK00080 23 SLDEFIGQEKVKENL-KIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV----------NIRITSGPALEK-- 89 (328)
T ss_pred CHHHCCCHHHHHHHH-HHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC----------CCEECCCCCCCC--
T ss_conf 576635959999999-9999999964999880576588998899999999998688----------815624500167--
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCC--------------------CCEE
Q ss_conf 43123789999999872038983999736166301554443447778888766302--------------------6603
Q gi|254780163|r 276 RYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSS--------------------GAVR 335 (798)
Q Consensus 276 ~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~r--------------------g~~~ 335 (798)
-.-+-+++.-++ .+-||||||||-| +-.+-.+|-|||.- -.+.
T Consensus 90 ------~~DL~~iLt~l~--~~dvLFIDEIHRl---------~~~vEE~LY~AMEDf~iDi~iG~g~~Ar~~~i~L~pFT 152 (328)
T PRK00080 90 ------AGDLAALLTNLE--EGDVLFIDEIHRL---------SPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFT 152 (328)
T ss_pred ------HHHHHHHHHHCC--CCCEEEEHHHHHC---------CHHHHHHHHHHHHHCEEEEEECCCCCCEEEECCCCCEE
T ss_conf ------478999996088--7876765065324---------88899885798775234578647865324555899834
Q ss_pred EEEECCHHHHHHHHHCCHHHHHHCEEEE-ECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 8873048999998520111432001443-068786899999986127665410351211178999998654201555646
Q gi|254780163|r 336 CIGSTTYSEYRQFFEKDKALVRRFQKID-VSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPD 414 (798)
Q Consensus 336 ~IgatT~~ey~~~~e~d~al~rrF~~i~-v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPd 414 (798)
.|||||-..- --..|..||-.+. ++.-+.++-.+|++.....+ ++.+++++......-| |--|.
T Consensus 153 LIGATTr~g~-----Ls~PLrdRFGi~~~l~~Y~~eeL~~Ii~rsa~~l----~i~i~~~~~~eIA~rS------RGTPR 217 (328)
T PRK00080 153 LIGATTRAGL-----LTSPLRDRFGIVQRLEFYTVEELEKIVKRSARIL----GIEIDEEGALEIARRS------RGTPR 217 (328)
T ss_pred EEECCCCCCC-----CCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHH----CCCCCHHHHHHHHHHC------CCCCH
T ss_conf 7401367665-----7767897579336634589999999999999983----9887899999999863------89839
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHCCHH
Q ss_conf 7988998653333211443221136578999866310245310111001123342100002
Q gi|254780163|r 415 KAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNL 475 (798)
Q Consensus 415 kAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~gip~~~~~~~~~~~l~~l~~~l 475 (798)
-|..||..+--.+.+ +....|+.+.+...+..+ ||-..-+..-+...|..|-+..
T Consensus 218 iAnrLLrRvrDfa~v----~~~~~I~~~~~~~aL~~l--~ID~~GLd~~Dr~~L~~l~~~f 272 (328)
T PRK00080 218 IANRLLRRVRDFAQV----KGDGIITREIADKALDML--GVDELGLDEMDRKYLLTIIEKF 272 (328)
T ss_pred HHHHHHHHHHHHHHH----CCCCCCCHHHHHHHHHHC--CCCCCCCCHHHHHHHHHHHHHC
T ss_conf 999999999999998----379965999999999956--9863489988999999999852
No 80
>pfam01078 Mg_chelatase Magnesium chelatase, subunit ChlI. Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Probab=99.27 E-value=1.9e-10 Score=94.20 Aligned_cols=178 Identities=28% Similarity=0.331 Sum_probs=112.1
Q ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCH-----
Q ss_conf 665345899999999987752044565787406886143200388999998730477337720688612465301-----
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSR----- 551 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~----- 551 (798)
..|+||+.|..++.-| -+|-+ .+|+.||.|+|||.+|+.+...+.. |-.-.+-|...-||++.
T Consensus 3 ~di~GQ~~akrAl~iA----aaG~H-------~lLl~GpPG~GKTmlA~rl~~iLP~-l~~~e~le~~~i~S~~g~~~~~ 70 (207)
T pfam01078 3 ADVKGQEQAKRALEIA----AAGGH-------NLLMIGPPGSGKTMLAKRLPGILPP-LTEQEALEVTAIHSVAGLGGDG 70 (207)
T ss_pred HHHCCCHHHHHHHHHH----HCCCC-------CEEEECCCCCCHHHHHHHHHCCCCC-CCHHHHHHHHHHHCCCCCCCCC
T ss_conf 6863859999999998----54787-------5897889980299999763014899-8789988777642303687777
Q ss_pred -HCCCC-----------CHHCCCC---CCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCC-CCEECC
Q ss_conf -10478-----------0002564---4431003555158517774044550289999999987775021779-977612
Q gi|254780163|r 552 -LIGAP-----------PGYVGFG---QGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQS-GKKISF 615 (798)
Q Consensus 552 -LiGap-----------pGYvG~~---egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~-Gr~vdf 615 (798)
++..| .+.+|-+ .-|.+|-| -..|++|||+-.-+++|++.|+|.|++|+++=+. |.++.|
T Consensus 71 ~l~~~rPfr~PHhs~s~~aliGGg~~~~PGeIslA----H~GVLFLDE~~Ef~~~vle~LrqpLE~~~v~IsRa~~~~~~ 146 (207)
T pfam01078 71 GLIRRRPFRAPHHSASAAALVGGGSIPRPGEISLA----HNGVLFLDELPEFSRRVLESLRQPLEDGEITISRARAKVTF 146 (207)
T ss_pred CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEC----CCCEEEECCHHHCCHHHHHHHHHHHCCCCEEEEECCCEEEE
T ss_conf 74457986578876436332268888999706663----68788847646539889999987660494899956758986
Q ss_pred -CCEEEEEECCCCHHHHHHCCCCCCCCCC-----HHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHH
Q ss_conf -5429999424214553303689882111-----4889999987288788177682896288999999
Q gi|254780163|r 616 -RNVILIMTTNAGALEMSKARIGFGSSRN-----DDADKEALRNFLSPEFLNRLDSIIPFFPLSSDII 677 (798)
Q Consensus 616 -~n~iii~TsN~G~~~~~~~~~g~~~~~~-----~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~ 677 (798)
.+.++|+++|-= ..|+-.+.. .......-.+.++--++.|||-.|.-.+++.+++
T Consensus 147 PA~f~LvaA~NPC-------pCG~~~~~~~~C~C~~~~~~~Y~~rlSgPllDRiDl~v~~~~~~~~~l 207 (207)
T pfam01078 147 PARFQLVAAMNPC-------PCGYLGDPDKRCRCTPRQIRRYLSRLSGPLLDRIDLQVEVPRLSAEEL 207 (207)
T ss_pred CCCEEEEEECCCC-------CCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHCCEEEEEECCCCCHHHC
T ss_conf 0434888850577-------778788999975788999999987645220206878997789995769
No 81
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.27 E-value=1.6e-07 Score=73.24 Aligned_cols=65 Identities=23% Similarity=0.221 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 46989999999999999980998125999878787377429999999849998999999983000
Q gi|254780163|r 81 KPTSSFQRVVQRAVLHVQSTGRGIVTGANILVALFSEPDSHATYFLQEQEMTLYDAVNFISHGIS 145 (798)
Q Consensus 81 ~~S~~l~rVL~~A~~~A~~~G~~~I~~eHLLLALL~e~ds~a~~iL~~~gis~~~v~~~i~~~~~ 145 (798)
.||+.++++|..|...|..+++.+|+++|||+||+.+.++.+..+|..++++...+...+...+.
T Consensus 4 kfT~~a~~~L~~A~~~A~~~~h~~V~~eHLLlaLl~~~~~~~~~~L~~~~vd~~~l~~~l~~~~~ 68 (823)
T CHL00095 4 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAARALKSLNVNLKDARKEVEKYIG 68 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 36699999999999999985989408999999997499847999999869999999999999984
No 82
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=9.3e-11 Score=96.48 Aligned_cols=160 Identities=16% Similarity=0.299 Sum_probs=104.8
Q ss_pred HHHHCHHHHHHHHHHHHHHHHCCC----CCCCCCCCEEEEECCCCHHHHHHHHHHHHHC--CCC-----EEEEEHHHHHC
Q ss_conf 665345899999999987752044----5657874068861432003889999987304--773-----37720688612
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKIARAGL----SDPNKPIGCYVFSGPTGVGKTEISKQLAFAL--GVQ-----LLRFDMSEYME 545 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~~~~gl----~~~~rP~g~flf~GptGvGKTelak~la~~~--~~~-----lir~dmsey~e 545 (798)
..|+||+++|..+-+|++..|+|+ ..+++..-.|||+||.|+|||.+|+.+|..+ +.. -..-.|-.+.
T Consensus 5 ~~ivGQe~v~~~L~~A~~~~R~~~~~~~~~~~~~~HAyLF~Gp~G~Gk~~~A~~~A~~l~C~~~~~~~cg~C~~C~~i~- 83 (395)
T PRK07940 5 DRLVGQDAVVAELRAAARAARADSAHSAAAGSGMTHAWLFTGPPGSGRSNAARAFAAALQCTDPGVPGCGECRACRTVL- 83 (395)
T ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH-
T ss_conf 1315929999999999983634344333346876603763689987889999999999669999999998787899987-
Q ss_pred CCCCCHHCCCCCHH---------CCCCCCCCCCHHHHHCC----CEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 46530110478000---------25644431003555158----517774044550289999999987775021779977
Q gi|254780163|r 546 RHAVSRLIGAPPGY---------VGFGQGGILADSVDQNP----YSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKK 612 (798)
Q Consensus 546 ~~~vs~LiGappGY---------vG~~egg~Lte~vr~~P----~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~ 612 (798)
-|+-|-+ +|-|+==.|.+.+..+| |-|+++|+.|+-.+.-+|.||..|+|--
T Consensus 84 -------~g~hpDv~~i~p~~~~i~id~iR~l~~~~~~~p~~~~~kv~ii~~a~~m~~~a~NalLKtLEEPp-------- 148 (395)
T PRK07940 84 -------AGTHPDVRVVVPEGLSIGVDEVREIVQIAARRPTTGRWRIVVIEDADRLTERAANALLKAVEEPP-------- 148 (395)
T ss_pred -------CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHCHHHHHHHHHHHCCCC--------
T ss_conf -------68998718982687768899999999998527303795599980778748999999998521788--------
Q ss_pred ECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHH
Q ss_conf 612542999942421455330368988211148899999872887881776828962889999999999
Q gi|254780163|r 613 ISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVV 681 (798)
Q Consensus 613 vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~ 681 (798)
.+++||++++-- ..+.|--+.|. ..+.|+|++.+++.+.+
T Consensus 149 ---~~~~fiL~t~~~-------------------------~~llpTI~SRc-q~~~f~~~~~~~i~~~L 188 (395)
T PRK07940 149 ---PRTVWLLCAPSV-------------------------EDVLPTIRSRC-RHVALRTPSVEAVADVL 188 (395)
T ss_pred ---CCEEEEEEECCH-------------------------HHHHHHHHHHH-EECCCCCCCHHHHHHHH
T ss_conf ---886999873997-------------------------87446887440-00237999999999999
No 83
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.27 E-value=6.6e-11 Score=97.52 Aligned_cols=173 Identities=21% Similarity=0.381 Sum_probs=108.4
Q ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH---HHC--CCCEEEEEHHHHHCCCCCCH
Q ss_conf 6653458999999999877520445657874068861432003889999987---304--77337720688612465301
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLA---FAL--GVQLLRFDMSEYMERHAVSR 551 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la---~~~--~~~lir~dmsey~e~~~vs~ 551 (798)
..++||++++..+...+.. .+-| .+||.||+|+|||-+|++|| |+. ..+++.+|-|+-..-..|..
T Consensus 16 ~di~g~~~~~~~L~~~i~~-------~~~p--hlLf~GppG~GKTt~a~~la~~l~~~~~~~~~lelnasd~r~id~vr~ 86 (318)
T PRK00440 16 DEVVGQEEIVERLKSFVKE-------KNMP--HLLFAGPPGTGKTTAALALARELYGEYWRENFLELNASDERGIDVIRN 86 (318)
T ss_pred HHHCCCHHHHHHHHHHHHC-------CCCC--EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHH
T ss_conf 9941969999999999987-------9986--698889599889999999999976986434768951645667178999
Q ss_pred HCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHH
Q ss_conf 10478000256444310035551585177740445502899999999877750217799776125429999424214553
Q gi|254780163|r 552 LIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEM 631 (798)
Q Consensus 552 LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~ 631 (798)
.|.. |. -+..+...||-|+++||++.-+.+-++.|+.++++- -+||.+|+++|--+..
T Consensus 87 ~i~~---~~-------~~~~~~~~~~kiiiiDE~d~l~~~aq~aL~~~mE~~-----------~~~~~fil~~n~~~ki- 144 (318)
T PRK00440 87 KIKE---FA-------RTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMY-----------SQTTRFILSCNYSSKI- 144 (318)
T ss_pred HHHH---HH-------HHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC-----------CCCCEEEEECCCCCCC-
T ss_conf 9999---99-------726778997389998685532255678887643105-----------6662588634883337-
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHH
Q ss_conf 30368988211148899999872887881776828962889999999999999999999998669889998899999997
Q gi|254780163|r 632 SKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVS 711 (798)
Q Consensus 632 ~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~ 711 (798)
.+ ...+|. ..+-|+|++.+++...+.. +. ...| +.+++++++.|+.
T Consensus 145 ----------------i~--------~i~SRc-~~i~f~~~~~~~i~~~L~~----I~---~~E~--i~~~~~~l~~i~~ 190 (318)
T PRK00440 145 ----------------ID--------PIQSRC-AVFRFSPLPKEAVIERLRY----IA---KNEG--LEITDDALEAIYY 190 (318)
T ss_pred ----------------CC--------CHHHHH-EEEECCCCCHHHHHHHHHH----HH---HHCC--CCCCHHHHHHHHH
T ss_conf ----------------61--------556551-0111578999999999999----99---9859--9989999999998
Q ss_pred CCC
Q ss_conf 189
Q gi|254780163|r 712 HGY 714 (798)
Q Consensus 712 ~~~ 714 (798)
.+.
T Consensus 191 ~s~ 193 (318)
T PRK00440 191 VSE 193 (318)
T ss_pred HCC
T ss_conf 649
No 84
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=99.26 E-value=2.9e-11 Score=100.14 Aligned_cols=159 Identities=20% Similarity=0.320 Sum_probs=113.6
Q ss_pred HHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC---CCCEEEEEHHHHHCCCCCCHHCCC
Q ss_conf 53458999999999877520445657874068861432003889999987304---773377206886124653011047
Q gi|254780163|r 479 VYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL---GVQLLRFDMSEYMERHAVSRLIGA 555 (798)
Q Consensus 479 v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~---~~~lir~dmsey~e~~~vs~LiGa 555 (798)
+||+..++..+.+.+.+. ...+.| .|..|++|+||+.+|+++-..+ ..+|+++||+.+.+.---+.|.|.
T Consensus 1 lIG~S~~m~~l~~~i~~~----a~~~~p---VLI~GE~GtGK~~lAr~IH~~S~r~~~pfi~vnc~~~~~~~le~~LFG~ 73 (168)
T pfam00158 1 LIGESPAMQEVLELAKRV----APTDAT---VLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGH 73 (168)
T ss_pred CEECCHHHHHHHHHHHHH----HCCCCC---EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf 973899999999999999----588998---8998999888899999999852435688312567899877999987587
Q ss_pred CCH-HCCCC--CCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHH
Q ss_conf 800-02564--443100355515851777404455028999999998777502177997761254299994242145533
Q gi|254780163|r 556 PPG-YVGFG--QGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMS 632 (798)
Q Consensus 556 ppG-YvG~~--egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~ 632 (798)
-+| |-|-. .-|.| .+.....++||||+...++++.-||+++++|..+--.+.+---.|+=||.||+.-
T Consensus 74 ~~g~f~ga~~~~~G~l----e~A~gGTL~LdeI~~L~~~~Q~~Ll~~L~~~~~~~~g~~~~~~~~vRiIast~~~----- 144 (168)
T pfam00158 74 EKGAFTGAVSDRKGLF----ELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRD----- 144 (168)
T ss_pred CCCCCCCCCCCCCCCE----EECCCCEEECCCHHHCCHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEEECCCC-----
T ss_conf 6676689875789964----2269987880244139999999999998579699779984588854999965988-----
Q ss_pred HCCCCCCCCCCHHHHHHH-HHHHCCHHHHCCCCEEEE
Q ss_conf 036898821114889999-987288788177682896
Q gi|254780163|r 633 KARIGFGSSRNDDADKEA-LRNFLSPEFLNRLDSIIP 668 (798)
Q Consensus 633 ~~~~g~~~~~~~~~~~~~-l~~~f~peflnRid~ii~ 668 (798)
..+. -+..|+++++-||. |++
T Consensus 145 --------------L~~~v~~G~Fr~DLyyrLn-v~~ 166 (168)
T pfam00158 145 --------------LEEAVAEGRFREDLYYRLN-VVP 166 (168)
T ss_pred --------------HHHHHHCCCCHHHHHHHHC-EEE
T ss_conf --------------9999883996399888865-232
No 85
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=99.26 E-value=2.1e-09 Score=86.79 Aligned_cols=318 Identities=21% Similarity=0.265 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHHHHH----HH-CCCCCCEEEECCCCCHHHHHHHHHHHHHHCC----C---CCHHHHEEEEEEEE-----
Q ss_conf 222178999999998----62-2677874896676411668999999998548----9---88345201445540-----
Q gi|254780163|r 205 ILVGRHEEINRTIQI----LC-RRSKNNPLYVGDPGVGKTAIAEGFAKQIVDG----M---VPDILLGARIFSLD----- 267 (798)
Q Consensus 205 PVIGRd~EI~riiqI----L~-RR~KNn~~lvG~~gvGktaive~la~~i~~~----~---vp~~l~~~~i~~ld----- 267 (798)
-+.|||+||+.+... |. -.+=+|+++-|++|+||||++.-+.+++.+. + |--.--||..++-.
T Consensus 18 ~i~hRdeqI~~l~~~L~~~l~PG~~P~Ni~iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~~NC~~~~T~y~~~~ 97 (383)
T TIGR02928 18 RIVHRDEQIEELAKALRPILRPGSRPSNIFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVYINCQILDTSYQVLV 97 (383)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHH
T ss_conf 46686789999999988750674898725887888987889999999999998622699715899977854684699999
Q ss_pred -HHHHH--CCC----CCCCH-HHHHHHHHHHHHC-CCCC-EEEEECCHHHHHCCCCCCCCCCCHHHHH----HH----HH
Q ss_conf -46753--063----43123-7899999998720-3898-3999736166301554443447778888----76----63
Q gi|254780163|r 268 -MGNLI--AGT----RYRGD-FEERIKKIVKEIE-SYAN-AILYIDEIHTLVGAGSASGISVDASNLL----KP----AL 329 (798)
Q Consensus 268 -~~~l~--ag~----~~rg~-fe~r~~~~~~~~~-~~~~-~ilfideih~ligag~~~g~~~d~an~l----kP----~L 329 (798)
+..=+ ++. .++|= +.+-++.+.+++. +.+. +|...|||-.|| -+..+.- --|.+| += .+
T Consensus 98 ~L~~~ln~~~~~~~vP~tG~s~~~~~~~l~~~l~~~~~~~~~ivLDEiD~Lv-~~~~d~P--AyS~~LY~L~Ra~~~~~~ 174 (383)
T TIGR02928 98 ELANQLNRRGSGEEVPTTGLSTSEVFRELYKELNRERGDSLIIVLDEIDKLV-RKDDDDP--AYSKLLYQLSRARENGDL 174 (383)
T ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH-CCCCCCH--HHHHHHHHHHHHHHCCCC
T ss_conf 9999851577888898877878999999999983201887999862310221-5888880--787885343310003577
Q ss_pred CCCCEEEEEECCHHHHHHHHHCCHHHHHHCEE--EEECCCCHHHHHHHHHHHHHHH-H-HHCCCEECCHHHHHHHHHHHH
Q ss_conf 02660388730489999985201114320014--4306878689999998612766-5-410351211178999998654
Q gi|254780163|r 330 SSGAVRCIGSTTYSEYRQFFEKDKALVRRFQK--IDVSEPSIEDAIEIVKGIKPYF-E-EHHQLRYSKEAIRAAVQLSVR 405 (798)
Q Consensus 330 ~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~--i~v~ep~~~~~~~iL~~~~~~y-e-~~h~v~~~~~al~~av~ls~r 405 (798)
....+-+||.|---.|+..+ |+--...|++ |.=++=+.++=..||. .|- | +||.=-++|++|..|+.++++
T Consensus 175 ~~~~vgvIgISND~~f~~~L--d~RVkSsL~~eei~FpPYdA~eL~~IL~---~R~v~~AF~dGvl~d~VI~lcAA~aAq 249 (383)
T TIGR02928 175 ENAKVGVIGISNDLKFRENL--DPRVKSSLCEEEIVFPPYDAEELRDILE---NRAVEKAFYDGVLDDGVIPLCAALAAQ 249 (383)
T ss_pred CCCCEEEEEEECCCHHHHHC--CCCEECCCCCCCCEECCCCHHHHHHHHH---HHHHHHCCCCCCCCHHHHHHHHHHHHC
T ss_conf 88534899986571436445--7530132487400407988699999997---203120336885462279999998620
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC-CCCCCHHHHHCCHHHHHHHHCCHHHHHHHCHHH
Q ss_conf 2015556467988998653333211443221136578999866310-245310111001123342100002466534589
Q gi|254780163|r 406 HFTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIASM-NRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEE 484 (798)
Q Consensus 406 yi~~r~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~~~-~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ 484 (798)
==-| =-||||||-.||=-+. .+....|+++||.+.-.+. .. .++.+.|-|.+.
T Consensus 250 ~hGD---AR~AiDLLR~AGe~A~----~~g~~~Vt~~HV~~A~e~~PE~-------------------~r~~e~~~~Lp~ 303 (383)
T TIGR02928 250 EHGD---ARKAIDLLRVAGEIAE----REGAERVTEDHVEEAQEKIPEV-------------------DRVLELIRGLPT 303 (383)
T ss_pred CCCC---HHHHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHCCHH-------------------HHHHHHHHCCCH
T ss_conf 6787---8999999998768753----1576310088899999832228-------------------899998607986
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH-HHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCC
Q ss_conf 99999999877520445657874068861432003889999987-30477337720688612465301104780002564
Q gi|254780163|r 485 AIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLA-FALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFG 563 (798)
Q Consensus 485 ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la-~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~ 563 (798)
-=..+..|+..... ..|++. +. .||..= +.=+.+| ...-+++-+==|++|+.+.+.--|+.+- ..+.+
T Consensus 304 h~k~~L~A~~~l~~--~~~~~~---~~---~t~~vY-~~Y~~~c~~~~~dpl~~rR~~~~l~eL~~LG~~~~~--~~~~G 372 (383)
T TIGR02928 304 HSKLVLLAIANLAA--ESPEED---PF---RTGEVY-EVYKELCEDIGVDPLTQRRISDLLNELDMLGLVEAE--ERNKG 372 (383)
T ss_pred HHHHHHHHHHHHHH--HCCCCC---EE---EEHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEE--EEECC
T ss_conf 79999999999985--167887---36---612778-999999876267766146799988767660733456--77426
Q ss_pred C-CCC
Q ss_conf 4-431
Q gi|254780163|r 564 Q-GGI 567 (798)
Q Consensus 564 e-gg~ 567 (798)
. +|.
T Consensus 373 ~g~G~ 377 (383)
T TIGR02928 373 RGGGR 377 (383)
T ss_pred CCCCE
T ss_conf 77643
No 86
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.25 E-value=1.1e-09 Score=88.84 Aligned_cols=200 Identities=21% Similarity=0.287 Sum_probs=132.3
Q ss_pred HHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCC
Q ss_conf 10000246653458999999999877520445657874068861432003889999987304773377206886124653
Q gi|254780163|r 470 NLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAV 549 (798)
Q Consensus 470 ~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~v 549 (798)
.|.-.--..+|||++.++.+.-.|.-++ ..+.|+.-.||.||+|.|||.||..+|..++.++-...-.-..-+.
T Consensus 18 ~lRP~~l~efiGQ~~i~~~L~v~i~Aak----~r~e~ldH~Ll~GPPGlGKTTLA~iiA~E~~~~~~~tsGP~lek~~-- 91 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAK----KRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKAG-- 91 (328)
T ss_pred CCCCCCHHHCCCHHHHHHHHHHHHHHHH----HCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCHH--
T ss_conf 5598857663595999999999999999----6499988057658899889999999999868881562450016747--
Q ss_pred CHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCC--CCC---CEE--CCCC-EEEE
Q ss_conf 0110478000256444310035551585177740445502899999999877750217--799---776--1254-2999
Q gi|254780163|r 550 SRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTD--QSG---KKI--SFRN-VILI 621 (798)
Q Consensus 550 s~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd--~~G---r~v--df~n-~iii 621 (798)
|=-+.||. -+|..|++.|||..-++.|-.+|+..|+|.++.= +.| |.+ +... |+|=
T Consensus 92 -------------DL~~iLt~---l~~~dvLFIDEIHRl~~~vEE~LY~AMEDf~iDi~iG~g~~Ar~~~i~L~pFTLIG 155 (328)
T PRK00080 92 -------------DLAALLTN---LEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIG 155 (328)
T ss_pred -------------HHHHHHHH---CCCCCEEEEHHHHHCCHHHHHHHHHHHHHCEEEEEECCCCCCEEEECCCCCEEEEE
T ss_conf -------------89999960---88787676506532488899885798775234578647865324555899834740
Q ss_pred EECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 94242145533036898821114889999987288788177682896288999999999999999999999866988999
Q gi|254780163|r 622 MTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHF 701 (798)
Q Consensus 622 ~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~ 701 (798)
-|+-.| ..+..|.+|+--+.-|...+.+++.+|+...-+. ..+.+
T Consensus 156 ATTr~g--------------------------~Ls~PLrdRFGi~~~l~~Y~~eeL~~Ii~rsa~~---------l~i~i 200 (328)
T PRK00080 156 ATTRAG--------------------------LLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI---------LGIEI 200 (328)
T ss_pred CCCCCC--------------------------CCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHH---------HCCCC
T ss_conf 136766--------------------------5776789757933663458999999999999998---------39887
Q ss_pred CHHHHHHHHHCCC-CCCCCCHHHHHH
Q ss_conf 8899999997189-810153267999
Q gi|254780163|r 702 SEEVINWLVSHGY-DVKMGARPLERI 726 (798)
Q Consensus 702 ~~~~~~~l~~~~~-~~~~GAR~l~r~ 726 (798)
++++...|++++- .|.---|-|+|+
T Consensus 201 ~~~~~~eIA~rSRGTPRiAnrLLrRv 226 (328)
T PRK00080 201 DEEGALEIARRSRGTPRIANRLLRRV 226 (328)
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 89999999986389839999999999
No 87
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=99.24 E-value=6.2e-11 Score=97.71 Aligned_cols=130 Identities=25% Similarity=0.478 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCC
Q ss_conf 58999999999877520445657874068861432003889999987304773377206886124653011047800025
Q gi|254780163|r 482 QEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVG 561 (798)
Q Consensus 482 Q~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGappGYvG 561 (798)
|+++|..|.....+. |+ .++|+ =|.||+|+|||-||..||...+.+.+-+.=- ..-.-|=|||+-.||--
T Consensus 3 ~t~~v~~v~~R~l~y---L~-~G~Pv---Hl~GPaG~GKT~LA~hvA~~r~RPV~l~~Gd---~eL~~~DLvG~~~g~~~ 72 (265)
T TIGR02640 3 ETDAVKRVTSRALRY---LK-SGYPV---HLRGPAGTGKTTLAMHVARKRDRPVVLINGD---AELTTSDLVGSYAGYTR 72 (265)
T ss_pred CCHHHHHHHHHHHHH---HC-CCCCE---EEECCCCCCHHHHHHHHHHHCCCCEEEEECC---CCCCCCCCCCCCCCCEE
T ss_conf 772379999987663---22-78866---7447888556899999997368968998658---23265442315467522
Q ss_pred -------------CCC-------CCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCC----CCCCEE----
Q ss_conf -------------644-------4310035551585177740445502899999999877750217----799776----
Q gi|254780163|r 562 -------------FGQ-------GGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTD----QSGKKI---- 613 (798)
Q Consensus 562 -------------~~e-------gg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd----~~Gr~v---- 613 (798)
-+| -+.||.||| .-|+ +..|||-..-|.+.|+||.||+||.|.= ++-+-|
T Consensus 73 ~kv~DqfihnV~K~~d~~~~~W~D~rLt~Av~-eG~T-LVYdEF~RskP~~nNVLLSvlEE~vL~LPg~~~~~~Yv~VhP 150 (265)
T TIGR02640 73 KKVVDQFIHNVVKLEDIVRQNWVDNRLTLAVR-EGFT-LVYDEFTRSKPETNNVLLSVLEEGVLELPGKRGESRYVDVHP 150 (265)
T ss_pred EEEEECCEEEEECCCCCCCCCCCCCHHHHHHH-CCCE-EEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEECC
T ss_conf 22320121113425122002667835789975-6972-766475788620456567555523215888787787225788
Q ss_pred CCCCEEEEEECCC
Q ss_conf 1254299994242
Q gi|254780163|r 614 SFRNVILIMTTNA 626 (798)
Q Consensus 614 df~n~iii~TsN~ 626 (798)
+|| .|+|||-
T Consensus 151 ~FR---~IfTSNp 160 (265)
T TIGR02640 151 EFR---VIFTSNP 160 (265)
T ss_pred CCC---EEECCCC
T ss_conf 702---4631487
No 88
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=1.4e-10 Score=95.20 Aligned_cols=164 Identities=21% Similarity=0.362 Sum_probs=100.3
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH-HHCCCCEEE---EEHHHHHCCCCCC
Q ss_conf 246653458999999999877520445657874068861432003889999987-304773377---2068861246530
Q gi|254780163|r 475 LGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLA-FALGVQLLR---FDMSEYMERHAVS 550 (798)
Q Consensus 475 l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la-~~~~~~lir---~dmsey~e~~~vs 550 (798)
--.++|||++++..+.+++...|. --.|||.||.|||||-+|..+| +-+..+--. -..++-.-.+.+.
T Consensus 21 ~~~~liGq~~~~~~L~~a~~~gRl--------~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~~~ 92 (352)
T PRK09112 21 ENNRLFGHEEARAFLAQAYREGRL--------HHALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASPLW 92 (352)
T ss_pred CHHHHCCHHHHHHHHHHHHHCCCC--------CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 464627869999999999984996--------524653589980899999999999866998666865567888787789
Q ss_pred HHC--CCCCHHC----CCCCC-CC------------CCHHHHHCC----CEEEEECCHHHCCHHHHHHHHHHHHHHHCCC
Q ss_conf 110--4780002----56444-31------------003555158----5177740445502899999999877750217
Q gi|254780163|r 551 RLI--GAPPGYV----GFGQG-GI------------LADSVDQNP----YSVVLLDEIEKSHPDVLNILLQIMDYGILTD 607 (798)
Q Consensus 551 ~Li--GappGYv----G~~eg-g~------------Lte~vr~~P----~sVvl~DEiEKAh~~v~~~llqild~G~ltd 607 (798)
|.| |+.|+.+ .+++. +. |.+.+...| |-|+++||.|+-+.+-+|.||.+|+|=
T Consensus 93 r~i~~g~hpdl~~i~r~~d~k~~~~~~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m~~~aaNALLK~LEEP---- 168 (352)
T PRK09112 93 RQIAQGAHPNLLHLTRPFDEKTGKFKTAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP---- 168 (352)
T ss_pred HHHHCCCCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCC----
T ss_conf 9997489999565534322021454335777999999998454886688069998187874699999999985348----
Q ss_pred CCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 7997761254299994242145533036898821114889999987288788177682896288999999999999
Q gi|254780163|r 608 QSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHK 683 (798)
Q Consensus 608 ~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~ 683 (798)
=.||++|+.||--. .+. |-...|. ..+.|+||+.+++.+.+..
T Consensus 169 -------p~~~~fiLit~~~~-----------------~ll--------~TI~SRC-q~~~f~pL~~~di~~~L~~ 211 (352)
T PRK09112 169 -------PARALFILISHSSG-----------------RLL--------PTIRSRC-QPISLKPLDDDELKKALSH 211 (352)
T ss_pred -------CCCEEEEEEECCHH-----------------HCH--------HHHHHHC-CCCCCCCCCHHHHHHHHHH
T ss_conf -------98748998869977-----------------776--------8999743-3214889398999999998
No 89
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.23 E-value=4.9e-10 Score=91.26 Aligned_cols=203 Identities=28% Similarity=0.411 Sum_probs=131.9
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHCCCCCCCC-----CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCC
Q ss_conf 2466534589999999998775204456578-----74068861432003889999987304773377206886124653
Q gi|254780163|r 475 LGTVVYGQEEAIKKLSSSIKIARAGLSDPNK-----PIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAV 549 (798)
Q Consensus 475 l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~r-----P~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~v 549 (798)
--.-||||++|-.+-.-.+.- |.+|.+ |- ..||-||+|+|||.+||+||-....+++-+.-.
T Consensus 119 t~ddViGqEeAK~kcrli~~y----LenPe~Fg~WAPk-nVLFyGppGTGKTm~Akalane~kvp~l~vkat-------- 185 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEY----LENPERFGDWAPK-NVLFYGPPGTGKTMMAKALANEAKVPLLLVKAT-------- 185 (368)
T ss_pred CHHHHHCHHHHHHHHHHHHHH----HHCHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHCCCCCCEEEECHH--------
T ss_conf 176641639888887999999----6496876345754-168778999648799998725457854871168--------
Q ss_pred CHHCCCCCHHCCCCC--CCCCCHHHHHCCCEEEEECCHHHCC------------HHHHHHHHHHHHHHHCCCCCCCEECC
Q ss_conf 011047800025644--4310035551585177740445502------------89999999987775021779977612
Q gi|254780163|r 550 SRLIGAPPGYVGFGQ--GGILADSVDQNPYSVVLLDEIEKSH------------PDVLNILLQIMDYGILTDQSGKKISF 615 (798)
Q Consensus 550 s~LiGappGYvG~~e--gg~Lte~vr~~P~sVvl~DEiEKAh------------~~v~~~llqild~G~ltd~~Gr~vdf 615 (798)
.|||- |||-+. =.+|-+.-++..-|||++||++--. .+|.|.||.=|| |. ..+.|
T Consensus 186 -~liGe---hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelD-gi-~eneG----- 254 (368)
T COG1223 186 -ELIGE---HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELD-GI-KENEG----- 254 (368)
T ss_pred -HHHHH---HHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC-CC-CCCCC-----
T ss_conf -88887---743598999999998875198499840024555304578864549999999998501-74-45775-----
Q ss_pred CCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 54299994242145533036898821114889999987288788177682896288999999999999999999999866
Q gi|254780163|r 616 RNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEK 695 (798)
Q Consensus 616 ~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~ 695 (798)
.+.|..+| .-+....+++ +|+.+=|-|.--+.++...|++..+..+
T Consensus 255 --VvtIaaTN-----------------~p~~LD~aiR--------sRFEeEIEF~LP~~eEr~~ile~y~k~~------- 300 (368)
T COG1223 255 --VVTIAATN-----------------RPELLDPAIR--------SRFEEEIEFKLPNDEERLEILEYYAKKF------- 300 (368)
T ss_pred --EEEEEECC-----------------CHHHCCHHHH--------HHHHHEEEEECCCHHHHHHHHHHHHHHC-------
T ss_conf --69995059-----------------8465078888--------6556506564888589999999989858-------
Q ss_pred CCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 988999889999999718981015326799999862359999996296
Q gi|254780163|r 696 GISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKVPLADEILFGK 743 (798)
Q Consensus 696 ~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~ 743 (798)
-+.+... .++++++. ..+..|. +.++.++..|-++|..|+
T Consensus 301 Plpv~~~---~~~~~~~t--~g~SgRd---ikekvlK~aLh~Ai~ed~ 340 (368)
T COG1223 301 PLPVDAD---LRYLAAKT--KGMSGRD---IKEKVLKTALHRAIAEDR 340 (368)
T ss_pred CCCCCCC---HHHHHHHH--CCCCCHH---HHHHHHHHHHHHHHHHCH
T ss_conf 9765568---99999984--7877206---899999999999987134
No 90
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.23 E-value=1e-10 Score=96.15 Aligned_cols=188 Identities=22% Similarity=0.341 Sum_probs=121.0
Q ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCC
Q ss_conf 66534589999999998775204456578740688614320038899999873047733772068861246530110478
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAP 556 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGap 556 (798)
..|+||++-+.. -..++|+- . ..-+.|+.|-||+|||||-+|+.+|-....+|..|+-- .++|..+-
T Consensus 24 de~vGQ~HLlg~-~~~lrr~v---~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv----~~gvkdlr--- 90 (436)
T COG2256 24 DEVVGQEHLLGE-GKPLRRAV---E--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV----TSGVKDLR--- 90 (436)
T ss_pred HHHCCHHHHHCC-CCHHHHHH---H--CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCC----CCCHHHHH---
T ss_conf 785571866189-94389999---6--49986057778999888899999987617766995152----34679999---
Q ss_pred CHHCCCCCCCCCCHHHHHCC----CEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHH
Q ss_conf 00025644431003555158----51777404455028999999998777502177997761254299994242145533
Q gi|254780163|r 557 PGYVGFGQGGILADSVDQNP----YSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMS 632 (798)
Q Consensus 557 pGYvG~~egg~Lte~vr~~P----~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~ 632 (798)
...|.-++.- -.|+++|||..=...=++.||-.+++|+++ +|=-|+
T Consensus 91 ----------~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~ii------------lIGATT-------- 140 (436)
T COG2256 91 ----------EIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTII------------LIGATT-------- 140 (436)
T ss_pred ----------HHHHHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHHHHHCCCEEE------------EEECCC--------
T ss_conf ----------99999999872588349987225333744565510332488689------------996267--------
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHC
Q ss_conf 03689882111488999998728878817768289628899999999999999999999986698899988999999971
Q gi|254780163|r 633 KARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSH 712 (798)
Q Consensus 633 ~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~ 712 (798)
+.+.=.+ .|.++.|. .|+.|.||+.+++.+++.+-+....+.+. +..+.++++++++|+..
T Consensus 141 --------ENPsF~l--------n~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~--~~~~~i~~~a~~~l~~~ 201 (436)
T COG2256 141 --------ENPSFEL--------NPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLG--GQIIVLDEEALDYLVRL 201 (436)
T ss_pred --------CCCCEEE--------CHHHHHHH-HEEEEECCCHHHHHHHHHHHHHHHHCCCC--CCCCCCCHHHHHHHHHH
T ss_conf --------8987140--------38886110-41565169989999999999865413777--65566888999999986
Q ss_pred CCCCCCCCHHHHHHHHH
Q ss_conf 89810153267999998
Q gi|254780163|r 713 GYDVKMGARPLERIIKE 729 (798)
Q Consensus 713 ~~~~~~GAR~l~r~i~~ 729 (798)
.-- -||..-..++-
T Consensus 202 s~G---D~R~aLN~LE~ 215 (436)
T COG2256 202 SNG---DARRALNLLEL 215 (436)
T ss_pred CCC---HHHHHHHHHHH
T ss_conf 286---19999889999
No 91
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=2.3e-10 Score=93.61 Aligned_cols=215 Identities=23% Similarity=0.301 Sum_probs=144.7
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCE-EEECCCCCHHHHHHHHHHHHHHCCCCCHH------------HHE
Q ss_conf 58877548611222178999999998622677874-89667641166899999999854898834------------520
Q gi|254780163|r 194 LTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNP-LYVGDPGVGKTAIAEGFAKQIVDGMVPDI------------LLG 260 (798)
Q Consensus 194 LTe~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~-~lvG~~gvGktaive~la~~i~~~~vp~~------------l~~ 260 (798)
|..+-|=-.+|-|||-+.-++.+...+...+=.+. ++.|++|||||+++..+|..+.-.+-|.. ..+
T Consensus 4 LarKYRP~~F~evIGQe~iv~~L~nAi~~~Rl~HAYLFsGPrGvGKTt~ArifAkaLnC~~~~~~~PCg~C~sC~~i~~g 83 (523)
T PRK08451 4 LALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFSRALVCEQGPSSTPCGTCAQCQAALEG 83 (523)
T ss_pred HHHHHCCCCHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 44420899654404949999999999985996715875789986889999999999759999998988878889998648
Q ss_pred --EEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCC----CCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHC--CC
Q ss_conf --1445540467530634312378999999987203----898399973616630155444344777888876630--26
Q gi|254780163|r 261 --ARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIES----YANAILYIDEIHTLVGAGSASGISVDASNLLKPALS--SG 332 (798)
Q Consensus 261 --~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~----~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~--rg 332 (798)
.-++++| +++-|| =+.++.+++.+.- .+--|..|||.|+| +..|+|-|.-.|. -.
T Consensus 84 ~hpDViEiD------aasn~g--ID~IReLie~~~~~P~~gryKV~IIDEah~L---------t~~A~NALLKTLEEPP~ 146 (523)
T PRK08451 84 RHIDIIEMD------AASNRG--IDDIRNLIEQTKYKPSMARFKIFIIDEVHML---------TKEAFNALLKTLEEPPS 146 (523)
T ss_pred CCCCEEEEC------CCCCCC--HHHHHHHHHHHCCCCCCCCEEEEEEECCCCC---------CHHHHHHHHHHCCCCCC
T ss_conf 999855105------533368--9999999997235886797279998260304---------89999999997038987
Q ss_pred CEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCC
Q ss_conf 60388730489999985201114320014430687868999999861276654103512111789999986542015556
Q gi|254780163|r 333 AVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKL 412 (798)
Q Consensus 333 ~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~l 412 (798)
...+|-+||.. +|.. +..-.|-|.......+.++-+.-|+.+... -++.|.++||...++.|.-=+.|
T Consensus 147 ~vvFILaTTep--~KLp---~TIlSRCQ~f~Fk~I~~~~I~~~L~~I~~~----E~i~~e~~AL~~IA~~a~GslRD--- 214 (523)
T PRK08451 147 YVKFILATTDP--LKLP---ATILSRTQHFRFKQIPQNSIISHLKTILNK----EGVSYEPEALEILARSGSGSLRD--- 214 (523)
T ss_pred CCEEEEECCCH--HHCH---HHHHHHHHCCCCCCCCHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHCCCCHHH---
T ss_conf 83799975994--7684---888742031103379999999999999998----39987999999999977894868---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 467988998653333211443221136578999866
Q gi|254780163|r 413 PDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTI 448 (798)
Q Consensus 413 PdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~ 448 (798)
|..+||.|-+.. ...++.++|.+++
T Consensus 215 ---alslLdQ~i~~~--------~~~i~~~~v~~~l 239 (523)
T PRK08451 215 ---TLTLLDQAIIFC--------KNAITESKVADML 239 (523)
T ss_pred ---HHHHHHHHHHHC--------CCCCCHHHHHHHH
T ss_conf ---987999999847--------9987799999985
No 92
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=99.22 E-value=1.7e-10 Score=94.63 Aligned_cols=205 Identities=26% Similarity=0.484 Sum_probs=132.1
Q ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHH---H-------HHCCCCEEEEEHH--HHH
Q ss_conf 665345899999999987752044565787406886143200388999998---7-------3047733772068--861
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQL---A-------FALGVQLLRFDMS--EYM 544 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~l---a-------~~~~~~lir~dms--ey~ 544 (798)
..||||++-|++ .||.|.-|| |-=+.++ ||+|||||=-|+.. | |..+-.||-+|-. =|=
T Consensus 65 ~EIiGQe~GI~A-------LKAALCGPN-PQHVIiY-GPPGVGKTAAARLVLeeAKk~~~SPFke~A~FVEiDATT~RFD 135 (532)
T TIGR02902 65 DEIIGQEEGIKA-------LKAALCGPN-PQHVIIY-GPPGVGKTAAARLVLEEAKKNPASPFKEEAAFVEIDATTARFD 135 (532)
T ss_pred CCCCCCHHHHHH-------HHHHCCCCC-CCEEEEE-CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCC
T ss_conf 325673556899-------998606868-9638987-8869617899999999865087537898866898505103602
Q ss_pred CCCCCCHHCCC--CCHHCCCCCCCC------CCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCC
Q ss_conf 24653011047--800025644431------0035551585177740445502899999999877750217799776125
Q gi|254780163|r 545 ERHAVSRLIGA--PPGYVGFGQGGI------LADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFR 616 (798)
Q Consensus 545 e~~~vs~LiGa--ppGYvG~~egg~------Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~ 616 (798)
|+.=..=|||| -|=|=|-+.=|+ =.=||-|--=.|+++|||==-||=-+|=||.||+| |+|=|-
T Consensus 136 ERGIADPLIGSVHDPIYQGAGplG~AGIPQPK~GAVT~AHGGvLFIDEIGELHP~~MNKLLKVLED--------RKVFLd 207 (532)
T TIGR02902 136 ERGIADPLIGSVHDPIYQGAGPLGVAGIPQPKPGAVTKAHGGVLFIDEIGELHPVQMNKLLKVLED--------RKVFLD 207 (532)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHC--------CCCHHH
T ss_conf 146666567761585333765457885575877763202586551212466582435314113302--------220000
Q ss_pred CEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHH-----------------HCCHHHHCCCCEEEECCCCCHHHHHH
Q ss_conf 4299994242145533036898821114889999987-----------------28878817768289628899999999
Q gi|254780163|r 617 NVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRN-----------------FLSPEFLNRLDSIIPFFPLSSDIIRQ 679 (798)
Q Consensus 617 n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~-----------------~f~peflnRid~ii~F~~l~~~~~~~ 679 (798)
.+..- .|| ...-+..++.-.+ -.+|.+..|+=+|+ |++|..++++.
T Consensus 208 SAYY~-s~~---------------pniP~hI~dIFqnGlPADFRLiGATTR~PeEIpPAlRSRC~EIF-FR~L~~EEi~~ 270 (532)
T TIGR02902 208 SAYYS-SED---------------PNIPSHIRDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIF-FRPLLKEEIKE 270 (532)
T ss_pred CCCCC-CCC---------------CCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCHHHHCCCEEEE-ECCCCHHHHHH
T ss_conf 12358-777---------------86542789972067873401213336987767834650522677-16888789999
Q ss_pred HHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 9999999999999866988999889999999718981015326799999
Q gi|254780163|r 680 VVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIK 728 (798)
Q Consensus 680 i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~ 728 (798)
|+++-. .+|.+.+++++++.|.....+ | |..=..||
T Consensus 271 iAk~Aa---------eKIg~~l~~~Al~~I~~Ya~n---G-REAvN~~Q 306 (532)
T TIGR02902 271 IAKNAA---------EKIGLNLEKEALDLIAKYASN---G-REAVNLVQ 306 (532)
T ss_pred HHHHHH---------HHCCCCCCHHHHHHHHHHHCC---C-CHHHHHHH
T ss_conf 987656---------530465475479999987405---4-06778999
No 93
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.22 E-value=2.8e-10 Score=93.04 Aligned_cols=199 Identities=20% Similarity=0.269 Sum_probs=140.8
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCE-EEECCCCCHHHHHHHHHHHHHHCCCCCHH------------HHE--
Q ss_conf 877548611222178999999998622677874-89667641166899999999854898834------------520--
Q gi|254780163|r 196 EKVKKGKVDILVGRHEEINRTIQILCRRSKNNP-LYVGDPGVGKTAIAEGFAKQIVDGMVPDI------------LLG-- 260 (798)
Q Consensus 196 e~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~-~lvG~~gvGktaive~la~~i~~~~vp~~------------l~~-- 260 (798)
.+-|--.++-|||-+.-++.+...+...+-.+. ++-|++|||||+.+.-||.-+.--+-|.. -.|
T Consensus 8 rkyRP~~f~dvvgQ~~v~~~L~n~i~~~~i~hayLf~GprG~GKTs~Ari~akalnc~~~~~~~pC~~C~~C~~i~~g~~ 87 (541)
T PRK05563 8 REWRPRTFEDVVGQEHITTTLKNQIINNRIAHAYLFCGTRGTGKTSTAKIFAKAVNCLNPQDGEPCNECEICKKINEGLL 87 (541)
T ss_pred HHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCC
T ss_conf 76489977662484999999999998499320453038799589999999999957999888985751488999856898
Q ss_pred EEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCC---CCC-EEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCC--CCE
Q ss_conf 1445540467530634312378999999987203---898-3999736166301554443447778888766302--660
Q gi|254780163|r 261 ARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIES---YAN-AILYIDEIHTLVGAGSASGISVDASNLLKPALSS--GAV 334 (798)
Q Consensus 261 ~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~---~~~-~ilfideih~ligag~~~g~~~d~an~lkP~L~r--g~~ 334 (798)
.-++++|. ++-||- +-++.+.+.+.- .++ -|.-|||.|+| +.+|.|-|.-.|.. ...
T Consensus 88 ~Dv~Eida------as~~gv--d~iR~~~~~~~~~p~~~~~Kv~IiDEvhml---------s~~a~nallKtlEePp~~~ 150 (541)
T PRK05563 88 MDVIEIDA------ASNNGV--DDIREIIENVKYPPQEGKYKVYIMDEVHML---------SQGAVNAFLKTLEEPPSNV 150 (541)
T ss_pred CCEEEECC------CCCCCH--HHHHHHHHHCEECCCCCCEEEEEEECCCCC---------CHHHHHHHHHHHHCCCCCC
T ss_conf 87366244------444788--999999976104876787059999772338---------9999999999985487775
Q ss_pred EEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 38873048999998520111432001443068786899999986127665410351211178999998654201555646
Q gi|254780163|r 335 RCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPD 414 (798)
Q Consensus 335 ~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPd 414 (798)
.+|-|||. ++|.. +.+-.|-|+......+.++-..-|+.+... -++.|+++||...++.|.-=+.|
T Consensus 151 ~Filatte--~~ki~---~tI~SRcq~f~f~~i~~~~i~~~L~~I~~~----E~i~~~~~al~lIa~~s~GsmRD----- 216 (541)
T PRK05563 151 IFILATTD--PQKLP---ITILSRCQRFDFKRIKVKDIFKRLRKIVEE----QGIFADDKSLNLIARMSDGAMRD----- 216 (541)
T ss_pred EEEEECCC--CCCCC---HHHHHHEEEEEEEECCHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHCCCCHHH-----
T ss_conf 69997698--44274---556742135775438999999999999998----49998789999999745997788-----
Q ss_pred HHHHHHHHHHHH
Q ss_conf 798899865333
Q gi|254780163|r 415 KAIDVIDEAGAS 426 (798)
Q Consensus 415 kAidllDea~a~ 426 (798)
|+.+||.+-|.
T Consensus 217 -AlslLdQ~is~ 227 (541)
T PRK05563 217 -ALSILDQAISM 227 (541)
T ss_pred -HHHHHHHHHHH
T ss_conf -99999999983
No 94
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.20 E-value=1.1e-09 Score=88.66 Aligned_cols=189 Identities=23% Similarity=0.325 Sum_probs=119.4
Q ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC-----CCCEEEEEHHHHHCCCCC--
Q ss_conf 6653458999999999877520445657874068861432003889999987304-----773377206886124653--
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL-----GVQLLRFDMSEYMERHAV-- 549 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~-----~~~lir~dmsey~e~~~v-- 549 (798)
..|+||+++++.+...+.. .+-| .+||.||+|+|||-+|+++|..+ +.+...++.|++.+....
T Consensus 15 ~dvvGq~~i~~~L~~~~~~-------~~~p--hlLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~~~~~~i 85 (337)
T PRK12402 15 EDILGQESVVDHLSALAAS-------GNLP--HLVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFDQGKKYL 85 (337)
T ss_pred HHHCCCHHHHHHHHHHHHC-------CCCC--EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEE
T ss_conf 9803979999999999977-------9987--698889298489999999999967997567833311653113564001
Q ss_pred ------CHHCCCCCHHCCCCCCCCCCHHH----HH----CCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECC
Q ss_conf ------01104780002564443100355----51----58517774044550289999999987775021779977612
Q gi|254780163|r 550 ------SRLIGAPPGYVGFGQGGILADSV----DQ----NPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISF 615 (798)
Q Consensus 550 ------s~LiGappGYvG~~egg~Lte~v----r~----~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf 615 (798)
...++.|. -.|-..-..+.+.+ .. .+|-|+++||.+.-.++-+|.|+.++++- =
T Consensus 86 ~~~~~~~~~~~~~~-~~~~~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~Aq~aLlk~lEe~-----------~ 153 (337)
T PRK12402 86 VEDPRFAHFYDDPK-RKYKSVIDNFKHILKEYASMRPLSADYKLILFDNAEALREDAQQALRRIMERY-----------S 153 (337)
T ss_pred ECCCCHHHHHCCHH-HCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC-----------C
T ss_conf 01664234420153-32773789999999998614887788049997071317999999999887408-----------8
Q ss_pred CCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 54299994242145533036898821114889999987288788177682896288999999999999999999999866
Q gi|254780163|r 616 RNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEK 695 (798)
Q Consensus 616 ~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~ 695 (798)
.+|.+|+++|--+. ..|...+|. ..+.|+|++.+++...+.. + ....
T Consensus 154 ~~~~fIl~t~~~~~-------------------------ii~tI~SRC-~~i~F~~~s~~~i~~~L~~----I---~~~E 200 (337)
T PRK12402 154 ETCRFIFSTTQPSK-------------------------LIPPIRSRC-LPLFFRPVPDDEIRSVLES----I---AAAE 200 (337)
T ss_pred CCEEEEEECCCCCC-------------------------CCHHHHHHC-EEEECCCCCHHHHHHHHHH----H---HHHC
T ss_conf 76699872386444-------------------------752477624-4543589899999999999----9---9984
Q ss_pred CCEEEECHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 98899988999999971898101532679999
Q gi|254780163|r 696 GISFHFSEEVINWLVSHGYDVKMGARPLERII 727 (798)
Q Consensus 696 ~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i 727 (798)
| +.+++++++.|++.+. ..+|+.|
T Consensus 201 ~--i~~~~~~l~~ia~~s~------GdlR~ai 224 (337)
T PRK12402 201 G--VEISDDGLDLIAYYAE------GDLRKAI 224 (337)
T ss_pred C--CCCCHHHHHHHHHHCC------CCHHHHH
T ss_conf 9--9989999999999869------9899999
No 95
>KOG0738 consensus
Probab=99.20 E-value=3.4e-10 Score=92.46 Aligned_cols=222 Identities=25% Similarity=0.389 Sum_probs=140.3
Q ss_pred HCCCCHHHHHHHHHHHHHHH--HH----------HCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEE
Q ss_conf 54861122217899999999--86----------2267787489667641166899999999854898834520144554
Q gi|254780163|r 199 KKGKVDILVGRHEEINRTIQ--IL----------CRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSL 266 (798)
Q Consensus 199 reGKLDPVIGRd~EI~riiq--IL----------~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~l 266 (798)
-.=+.|-|.|=.+-.+-+-+ +| .||-=..++|+|+||.|||-|+..+|-- .+..+|.+
T Consensus 207 p~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATE----------c~tTFFNV 276 (491)
T KOG0738 207 PNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATE----------CGTTFFNV 276 (491)
T ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH----------HCCEEEEE
T ss_conf 98676763164999999998875444248887424465300055679997478999999886----------16727874
Q ss_pred EHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHH-----------CC-CCE
Q ss_conf 046753063431237899999998720389839997361663015544434477788887663-----------02-660
Q gi|254780163|r 267 DMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPAL-----------SS-GAV 334 (798)
Q Consensus 267 d~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L-----------~r-g~~ 334 (798)
+-+.| -.|||||-|.-++-+++-++...+.++|||||.+|.+--++++ .-.|+-=+|--| .. .-+
T Consensus 277 Ssstl--tSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~-EHEaSRRvKsELLvQmDG~~~t~e~~k~V 353 (491)
T KOG0738 277 SSSTL--TSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSS-EHEASRRVKSELLVQMDGVQGTLENSKVV 353 (491)
T ss_pred CHHHH--HHHHCCCHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCCEEE
T ss_conf 02456--5553252699999999999874885353356778872579865-03678888889999863344444565169
Q ss_pred EEEEECCHHHHHHHHHCCHHHHHHCEE-EEECCCCHHHHHHHHH---------------HHHHHHHHHCCCEECCHHHHH
Q ss_conf 388730489999985201114320014-4306878689999998---------------612766541035121117899
Q gi|254780163|r 335 RCIGSTTYSEYRQFFEKDKALVRRFQK-IDVSEPSIEDAIEIVK---------------GIKPYFEEHHQLRYSKEAIRA 398 (798)
Q Consensus 335 ~~IgatT~~ey~~~~e~d~al~rrF~~-i~v~ep~~~~~~~iL~---------------~~~~~ye~~h~v~~~~~al~~ 398 (798)
-+.+||..- -+-|.||-|||++ |.|.=|+.+.--.+|+ -+..+.|.|.|-.|+.-+-++
T Consensus 354 mVLAATN~P-----WdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreA 428 (491)
T KOG0738 354 MVLAATNFP-----WDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREA 428 (491)
T ss_pred EEEECCCCC-----CCHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 998436898-----205799999876303312878789999999762356688875699999985688737799999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 9998654201555646798899865333321144322113657899986631
Q gi|254780163|r 399 AVQLSVRHFTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIAS 450 (798)
Q Consensus 399 av~ls~ryi~~r~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~~ 450 (798)
+..--.|||... .|+ -|-.+ +.+....-|+..|+...+.+
T Consensus 429 sm~~mRR~i~g~-~~~-ei~~l----------akE~~~~pv~~~Dfe~Al~~ 468 (491)
T KOG0738 429 SMMAMRRKIAGL-TPR-EIRQL----------AKEEPKMPVTNEDFEEALRK 468 (491)
T ss_pred HHHHHHHHHHCC-CCH-HHHHH----------HHHCCCCCCCHHHHHHHHHH
T ss_conf 999999997247-917-76443----------23143456515659999997
No 96
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.20 E-value=1.6e-09 Score=87.59 Aligned_cols=214 Identities=20% Similarity=0.254 Sum_probs=135.1
Q ss_pred CHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC-----CCCEEEEEHHHHHCCC
Q ss_conf 00246653458999999999877520445657874068861432003889999987304-----7733772068861246
Q gi|254780163|r 473 KNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL-----GVQLLRFDMSEYMERH 547 (798)
Q Consensus 473 ~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~-----~~~lir~dmsey~e~~ 547 (798)
.....++.|-++-++.+...+.-.-- .++|- +.+..||||+|||-++|.+...+ .-..+.+||..+..++
T Consensus 26 ~yvP~~l~~Re~Ei~~l~~~l~~~l~----g~~~~-n~~I~G~pGTGKT~~vk~v~~~l~~~~~~~~~vyINc~~~~t~~ 100 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALR----GSRPS-NVLILGPPGTGKTTTVKKVFEELEEAALKVVYVYINCQIDRTRY 100 (394)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHC----CCCCC-CEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH
T ss_conf 88899898859999999999999975----99998-47998899998999999999999974689659999696689899
Q ss_pred CCC-----HHCCCCCHHCCCCCCCC---CCHHH-HHCCCEEEEECCHHHC-CHHHHHHHHHHHHHHHCCCCCCCEECCCC
Q ss_conf 530-----11047800025644431---00355-5158517774044550-28999999998777502177997761254
Q gi|254780163|r 548 AVS-----RLIGAPPGYVGFGQGGI---LADSV-DQNPYSVVLLDEIEKS-HPDVLNILLQIMDYGILTDQSGKKISFRN 617 (798)
Q Consensus 548 ~vs-----~LiGappGYvG~~egg~---Lte~v-r~~P~sVvl~DEiEKA-h~~v~~~llqild~G~ltd~~Gr~vdf~n 617 (798)
.+. .|-|.++-.-|+...-. +.+.+ .+..+.||++|||++- ..+-.++|++++.-- + ...-..
T Consensus 101 ~i~~~i~~~L~~~~~p~~G~s~~~~~~~l~~~l~~~~~~~ivvLDEiD~L~~~~~~~vLY~L~r~~---~----~~~~~~ 173 (394)
T PRK00411 101 AILSEIARSLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLVEKEGNDVLYSLLRAH---E----EYPGAR 173 (394)
T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCC---C----CCCCCC
T ss_conf 999999999569989877878999999999986166975899996554020366508999998540---2----268873
Q ss_pred EEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 29999424214553303689882111488999998728878817768289628899999999999999999999986698
Q gi|254780163|r 618 VILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGI 697 (798)
Q Consensus 618 ~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i 697 (798)
+.+|+-||- +.| .+...+.++..|.| ..|.|.|.+.+++..|+...++... . .|
T Consensus 174 ~~vI~IsN~---------~~~-----~~~Ldprv~S~l~~-------~~i~F~PY~~~qL~~IL~~R~~~af---~-~g- 227 (394)
T PRK00411 174 IGVIGISSD---------LTF-----LYILDPRVKSVFGP-------EEIVFPPYTADEIFDILKDRVEEGF---Y-PG- 227 (394)
T ss_pred EEEEEEECC---------CCH-----HHHHHHHHHCCCCC-------EEEEECCCCHHHHHHHHHHHHHHCC---C-CC-
T ss_conf 899999768---------717-----76640777502786-------2898589998999999999998414---5-56-
Q ss_pred EEEECHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 89998899999997189810153267999
Q gi|254780163|r 698 SFHFSEEVINWLVSHGYDVKMGARPLERI 726 (798)
Q Consensus 698 ~l~~~~~~~~~l~~~~~~~~~GAR~l~r~ 726 (798)
.++++++.+++.+.-...--||---.+
T Consensus 228 --v~~~~~i~~~A~~~a~~~GDaR~Aldl 254 (394)
T PRK00411 228 --VVSDEVLELIADLTGREHGDARVAIDL 254 (394)
T ss_pred --CCCHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf --789789999999985504758999999
No 97
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.19 E-value=3.5e-10 Score=92.34 Aligned_cols=161 Identities=23% Similarity=0.368 Sum_probs=104.5
Q ss_pred HHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH-HCC----CCEEEEEH---HHHHCCC
Q ss_conf 466534589999999998775204456578740688614320038899999873-047----73377206---8861246
Q gi|254780163|r 476 GTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAF-ALG----VQLLRFDM---SEYMERH 547 (798)
Q Consensus 476 ~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~-~~~----~~lir~dm---sey~e~~ 547 (798)
-..||||++++..+.+++...| ---+|||.||.|+|||-+|..+|. -+. ...-.-.+ -+....|
T Consensus 16 ~~~liGqe~~~~~L~~a~~~gr--------l~HA~Lf~Gp~GiGK~tlA~~~A~~ll~~~~~~~~~~~~~~~~l~~~~~~ 87 (363)
T PRK07471 16 TTALFGHAAAEAALLDAYRSGR--------LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDAVFPPPASLAVDPDH 87 (363)
T ss_pred CCCCCCHHHHHHHHHHHHHCCC--------CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCC
T ss_conf 2731681999999999998599--------76458767999818899999999998579997777767870531258777
Q ss_pred CCCHHC--CCCCHHCC----CCCCC-C-----CCHHHH-------HCC----CEEEEECCHHHCCHHHHHHHHHHHHHHH
Q ss_conf 530110--47800025----64443-1-----003555-------158----5177740445502899999999877750
Q gi|254780163|r 548 AVSRLI--GAPPGYVG----FGQGG-I-----LADSVD-------QNP----YSVVLLDEIEKSHPDVLNILLQIMDYGI 604 (798)
Q Consensus 548 ~vs~Li--GappGYvG----~~egg-~-----Lte~vr-------~~P----~sVvl~DEiEKAh~~v~~~llqild~G~ 604 (798)
.+.+.| |+-|++.. +++.+ . -.+.|| ..| |-|+++|+.|+-+.+-.|.||.+|+|=
T Consensus 88 p~~r~i~~~~hpdl~~i~r~~d~k~~~~~~~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~mn~~aaNALLK~LEEP- 166 (363)
T PRK07471 88 PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRETIGFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP- 166 (363)
T ss_pred CHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHHHCCC-
T ss_conf 2899995269998466762001133321244539999999999724852489669998687873889999999972158-
Q ss_pred CCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHH
Q ss_conf 21779977612542999942421455330368988211148899999872887881776828962889999999999
Q gi|254780163|r 605 LTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVV 681 (798)
Q Consensus 605 ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~ 681 (798)
=.||++||.|+--.. +.|--+.|. ..+.|+||+++++.+.+
T Consensus 167 ----------P~~t~fiLit~~~~~-------------------------llpTI~SRC-q~~~~~~l~~~~~~~~L 207 (363)
T PRK07471 167 ----------PARSLLLLVSHAPAR-------------------------LLPTIRSRC-RKLRLRPLAPEDVIAAL 207 (363)
T ss_pred ----------CCCEEEEEEECCHHH-------------------------CHHHHHHHC-CCCCCCCCCHHHHHHHH
T ss_conf ----------988389986399777-------------------------779999735-24258995999999999
No 98
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.19 E-value=9.2e-11 Score=96.51 Aligned_cols=140 Identities=29% Similarity=0.390 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHH
Q ss_conf 21789999999986226778748966764116689999999985489883452014455404675306343123789999
Q gi|254780163|r 207 VGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIK 286 (798)
Q Consensus 207 IGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~ 286 (798)
.|++.+++.+.+.+......|.+|.|+||+|||.+++.+|+... ..+..++.++.+.+..+....+++.....
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~ill~GppGtGKT~la~~ia~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF-------RPGAPFLYLNASDLLEGLVVAELFGHFLV 73 (151)
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC-------CCCCCEEEEEHHHCCHHHHHHHHHHHHHH
T ss_conf 98579999999998187998089989999886599999999712-------13798278547770467777576057788
Q ss_pred HHHHH-HCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHCCHHHHHHCEE
Q ss_conf 99987-20389839997361663015544434477788887663----02660388730489999985201114320014
Q gi|254780163|r 287 KIVKE-IESYANAILYIDEIHTLVGAGSASGISVDASNLLKPAL----SSGAVRCIGSTTYSEYRQFFEKDKALVRRFQK 361 (798)
Q Consensus 287 ~~~~~-~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L----~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~ 361 (798)
..... .....+.||||||++.+- . .... ...++|.-.+ .++.+++|++|+..+. ...+.++..||..
T Consensus 74 ~~~~~~~~~~~~~vl~iDEi~~l~-~-~~~~---~~~~~l~~~~~~~~~~~~~~vI~~tn~~~~---~~~~~~~~~R~~~ 145 (151)
T cd00009 74 RLLFELAEKAKPGVLFIDEIDSLS-R-GAQN---ALLRVLETLNDLRIDRENVRVIGATNRPLL---GDLDRALYDRLDI 145 (151)
T ss_pred HHHHHHHHHCCCCEEEEECHHHCC-H-HHHH---HHHHHHHHHCCCCCCCCCEEEEEEECCCCC---CCHHHHHHCCCCE
T ss_conf 989999997699869820166559-9-9999---999999871575406788899995289988---6837764255986
No 99
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.19 E-value=1.4e-10 Score=95.30 Aligned_cols=200 Identities=17% Similarity=0.169 Sum_probs=129.8
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCE-EEECCCCCHHHHHHHHHHHHHHCCCCCH-----------HHH--
Q ss_conf 58877548611222178999999998622677874-8966764116689999999985489883-----------452--
Q gi|254780163|r 194 LTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNP-LYVGDPGVGKTAIAEGFAKQIVDGMVPD-----------ILL-- 259 (798)
Q Consensus 194 LTe~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~-~lvG~~gvGktaive~la~~i~~~~vp~-----------~l~-- 259 (798)
|-.+-|-..++-|||-+.-++.+..-+...+=++. |+.|+-|||||+++.-||+.+.-.+-|. .+.
T Consensus 5 LyrkyRP~~F~eviGQe~v~~~L~~Ai~~gri~HAYLFsGprG~GKTt~ARilAkaLNC~~~~~~~PCg~C~sC~~i~~g 84 (775)
T PRK07764 5 LYRRYRPATFAEVVGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTSTPCGVCDSCVALAPG 84 (775)
T ss_pred HHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 66550788766622859999999999981997633762378887888999999999668999998988887637888638
Q ss_pred ---EEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCC----CCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHC--
Q ss_conf ---01445540467530634312378999999987203----898399973616630155444344777888876630--
Q gi|254780163|r 260 ---GARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIES----YANAILYIDEIHTLVGAGSASGISVDASNLLKPALS-- 330 (798)
Q Consensus 260 ---~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~----~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~-- 330 (798)
+.-++++| +++++|- +.++.|++.+.- ..--|..|||.|+| +-.+.|-|.-.|.
T Consensus 85 ~~~~~DviEiD------AAS~~gV--ddiReL~e~~~y~P~~~ryKVyIIDEaHml---------s~~afNALLKtLEEP 147 (775)
T PRK07764 85 GPGSLDVVEID------AASHGGV--DDARELRERAFFAPAQSRYRIFIIDEAHMV---------TTAGFNALLKIVEEP 147 (775)
T ss_pred CCCCCCEEEEC------CCCCCCH--HHHHHHHHHCCCCCCCCCEEEEEEECHHHH---------CHHHHHHHHHHHCCC
T ss_conf 98888668731------5655688--999999985476876786359998535440---------799999998862278
Q ss_pred CCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCC
Q ss_conf 26603887304899999852011143200144306878689999998612766541035121117899999865420155
Q gi|254780163|r 331 SGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSR 410 (798)
Q Consensus 331 rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r 410 (798)
-..+.+|=+||.-+ |... -.-.|-|.....--+.++-..-|..+. ..-+|.|.+++|..+++.+.--+.|
T Consensus 148 P~hvvFIlaTTep~--kip~---TI~SRcq~f~Fr~i~~~~~~~~l~~i~----~~E~i~~~~~al~li~r~~~Gs~RD- 217 (775)
T PRK07764 148 PEHLIFIFATTEPE--KVIG---TIRSRTHHYPFRLVPPGTMRPYLERIC----AQEGVVVDDAVLPLVIRAGGGSPRD- 217 (775)
T ss_pred CCCEEEEEECCCHH--HCCH---HHHHHCCCCCCCCCCHHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHCCCCHHH-
T ss_conf 64627999548735--4716---776410234526699999999999999----9839987989999999982896676-
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 564679889986533
Q gi|254780163|r 411 KLPDKAIDVIDEAGA 425 (798)
Q Consensus 411 ~lPdkAidllDea~a 425 (798)
|+.|||.+-|
T Consensus 218 -----alS~ldQl~a 227 (775)
T PRK07764 218 -----TLSVLDQLLA 227 (775)
T ss_pred -----HHHHHHHHHH
T ss_conf -----8999999984
No 100
>KOG0740 consensus
Probab=99.18 E-value=3.8e-10 Score=92.08 Aligned_cols=160 Identities=27% Similarity=0.345 Sum_probs=124.4
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHH
Q ss_conf 74896676411668999999998548988345201445540467530634312378999999987203898399973616
Q gi|254780163|r 227 NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIH 306 (798)
Q Consensus 227 n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih 306 (798)
..+|.|+||.|||+|++.+|.- .+..++.+...+| -.||.|+-|.-+..|+.-++....-|.||||+|
T Consensus 188 glLLfGPpgtGKtmL~~aiAsE----------~~atff~iSassL--tsK~~Ge~eK~vralf~vAr~~qPsvifidEid 255 (428)
T KOG0740 188 GLLLFGPPGTGKTMLAKAIATE----------SGATFFNISASSL--TSKYVGESEKLVRALFKVARSLQPSVIFIDEID 255 (428)
T ss_pred HHHEECCCCCCHHHHHHHHHHH----------HCCEEEECCHHHH--HHHCCCHHHHHHHHHHHHHHHCCCEEEEECHHH
T ss_conf 1120058988447999999862----------0665763068886--532467077899999999871397089840256
Q ss_pred HHHCCCCCCCCCCCHH----------HHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHCEE-EEECCCCHHHHHHH
Q ss_conf 6301554443447778----------888766302660388730489999985201114320014-43068786899999
Q gi|254780163|r 307 TLVGAGSASGISVDAS----------NLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQK-IDVSEPSIEDAIEI 375 (798)
Q Consensus 307 ~ligag~~~g~~~d~a----------n~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~-i~v~ep~~~~~~~i 375 (798)
.++..- +....+.+ -..++--+...+.+||||-. ..|-|-|.-|||++ +.|+-|+.++-..+
T Consensus 256 slls~R--s~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~-----P~e~Dea~~Rrf~kr~yiplPd~etr~~~ 328 (428)
T KOG0740 256 SLLSKR--SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNR-----PWELDEAARRRFVKRLYIPLPDYETRSLL 328 (428)
T ss_pred HHHHHC--CCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCC-----CHHHHHHHHHHHCCEEEECCCCHHHHHHH
T ss_conf 788636--87545445556557776540445788870799815888-----36778888887103155359887899999
Q ss_pred HHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCC
Q ss_conf 9861276654103512111789999986542015
Q gi|254780163|r 376 VKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTS 409 (798)
Q Consensus 376 L~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~ 409 (798)
+.++-..+ +...++..+...+++.+-|-..
T Consensus 329 ~~~ll~~~----~~~l~~~d~~~l~~~Tegysgs 358 (428)
T KOG0740 329 WKQLLKEQ----PNGLSDLDISLLAKVTEGYSGS 358 (428)
T ss_pred HHHHHHHC----CCCCCHHHHHHHHHHHCCCCCC
T ss_conf 99999768----7874177899999886175622
No 101
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=2.2e-10 Score=93.72 Aligned_cols=153 Identities=20% Similarity=0.302 Sum_probs=76.2
Q ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC-CCC--EEEEEHHHHHCCCCCCHHC
Q ss_conf 6653458999999999877520445657874068861432003889999987304-773--3772068861246530110
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL-GVQ--LLRFDMSEYMERHAVSRLI 553 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~-~~~--lir~dmsey~e~~~vs~Li 553 (798)
..|+||++++..+.+++...+ ---++||+||.|||||.+|+.+|..+ ... --..|+-++.-.
T Consensus 4 ~~iiGq~~i~~~L~~~i~~~r--------l~HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~~~~~D~~~~~~~------- 68 (313)
T PRK05564 4 RTIIGHENIKNRIDNSIIKGK--------FSHASLIVGEDGIGKSILAKEIANKILGKSEQREYVDIIEYKPI------- 68 (313)
T ss_pred HHCCCHHHHHHHHHHHHHCCC--------CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECC-------
T ss_conf 232682999999999998799--------87504327999850999999999998289977889865886332-------
Q ss_pred CCCCHHCCCCCCCCCCHHHHHCCC----EEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHH
Q ss_conf 478000256444310035551585----1777404455028999999998777502177997761254299994242145
Q gi|254780163|r 554 GAPPGYVGFGQGGILADSVDQNPY----SVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGAL 629 (798)
Q Consensus 554 GappGYvG~~egg~Lte~vr~~P~----sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~ 629 (798)
...-+|-|+=-.|.+.+..+|+ -|+++||.|+-+.+=.|.||..|+|= -.+|++||+|+--
T Consensus 69 --~~~~I~vd~IR~l~~~~~~~p~~g~~KV~II~~ae~m~~~AaNALLKtLEEP-----------P~~t~fIL~t~~~-- 133 (313)
T PRK05564 69 --NKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYKSEKMTEQAQNAFLKTIEEP-----------PKGVFIILLCENL-- 133 (313)
T ss_pred --CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHCCCCC-----------CCCEEEEEEECCH--
T ss_conf --2569998999999999840862589569998077775899999984550368-----------9985899864983--
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 533036898821114889999987288788177682896288999999999999
Q gi|254780163|r 630 EMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHK 683 (798)
Q Consensus 630 ~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~ 683 (798)
....|--+.|. .++.|+|++.+++...+..
T Consensus 134 -----------------------~~lLpTI~SRC-Q~~~f~~l~~~~i~~~L~~ 163 (313)
T PRK05564 134 -----------------------EQILDTIKSRC-QIYKLNRLSKEDIEKFISY 163 (313)
T ss_pred -----------------------HHCCCHHHCCC-EEEECCCCCHHHHHHHHHH
T ss_conf -----------------------54757787065-3566899899999999998
No 102
>PRK04195 replication factor C large subunit; Provisional
Probab=99.17 E-value=1.1e-09 Score=88.81 Aligned_cols=186 Identities=25% Similarity=0.393 Sum_probs=120.9
Q ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCC
Q ss_conf 66534589999999998775204456578740688614320038899999873047733772068861246530110478
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAP 556 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGap 556 (798)
..|+||+.++..+..-+..-..| ..+. -.+||.||+|||||-+|.+||...+-.++-+|-|+.-....+.+.++.-
T Consensus 14 ~divg~~~~v~~l~~Wl~~w~~g-~~~~---k~lLL~GPpGvGKTT~a~~lAk~~g~~viElNASD~R~~~~I~~~i~~~ 89 (403)
T PRK04195 14 SDVVGNEKAKKQLREWIESWLKG-KPPK---KALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTKDVIERVAGEA 89 (403)
T ss_pred HHHHCCHHHHHHHHHHHHHHHCC-CCCC---CEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHH
T ss_conf 99858899999999999998739-9657---4699889399879999999999849985997710114789999999987
Q ss_pred CHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHH----HHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHH
Q ss_conf 00025644431003555158517774044550289----99999998777502177997761254299994242145533
Q gi|254780163|r 557 PGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPD----VLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMS 632 (798)
Q Consensus 557 pGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~----v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~ 632 (798)
- ..+-|+ ..++-+|++||++--|.. -...+++++.+. ..-|||++|= .
T Consensus 90 ~------~~~sl~----~~~~KlIIlDEvD~l~~~~d~gg~~al~~~ik~s-------------~~PiIli~Nd----~- 141 (403)
T PRK04195 90 S------TSGSLF----GAKRKLILLDEVDGIHGNADRGGVRAILEIIKKA-------------KNPIILTAND----P- 141 (403)
T ss_pred H------HCCCCC----CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC-------------CCEEEEEECC----C-
T ss_conf 6------068877----8873499963434457244479999999998548-------------8708998268----4-
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHC
Q ss_conf 03689882111488999998728878817768289628899999999999999999999986698899988999999971
Q gi|254780163|r 633 KARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSH 712 (798)
Q Consensus 633 ~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~ 712 (798)
.. . ..+.+.+|. .++.|+|++..++...+.. +. ...|+ .+++++++.|++.
T Consensus 142 -----~~--~------------~~~~lrs~c-~~i~F~~~~~~~I~~~L~~----I~---~~Egi--~i~~~aL~~Ia~~ 192 (403)
T PRK04195 142 -----YD--P------------SLRPLRNAC-LMIEFKRLSKRSIVPVLKR----IC---RKEGI--ECEEEALREIAER 192 (403)
T ss_pred -----CC--C------------CHHHHHHHH-HHCCCCCCCHHHHHHHHHH----HH---HHCCC--CCCHHHHHHHHHH
T ss_conf -----55--6------------717799766-1221799499999999999----99---97699--9999999999998
Q ss_pred CCCCCCCCHHHHHHHHH
Q ss_conf 89810153267999998
Q gi|254780163|r 713 GYDVKMGARPLERIIKE 729 (798)
Q Consensus 713 ~~~~~~GAR~l~r~i~~ 729 (798)
+-. .||..|..
T Consensus 193 s~G------DlR~aIN~ 203 (403)
T PRK04195 193 SGG------DLRSAIND 203 (403)
T ss_pred CCC------HHHHHHHH
T ss_conf 797------39999999
No 103
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.16 E-value=2.3e-09 Score=86.47 Aligned_cols=226 Identities=19% Similarity=0.275 Sum_probs=135.9
Q ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCC----CEEEEE------HHHHHCC
Q ss_conf 665345899999999987752044565787406886143200388999998730477----337720------6886124
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGV----QLLRFD------MSEYMER 546 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~----~lir~d------msey~e~ 546 (798)
..|+||++|..++.-+.. +|+ +|..|+.||.|+|||-+|+.|+..+.. .-+.++ +.++.+.
T Consensus 8 s~IvGQe~~K~AL~laav-------~p~--~ggvLi~G~~GtgKStlaR~l~~iLP~~~~~e~~~~~~~~~~~~~~~~~~ 78 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAI-------DPG--IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAEV 78 (334)
T ss_pred HHHCCCHHHHHHHHHHHC-------CCC--CCEEEEECCCCCCHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCHHHHHC
T ss_conf 376493999999999772-------789--86089978998659999999997289951103675566774211334311
Q ss_pred CCC------------------CHHCCCC---CHHCC---CCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHH
Q ss_conf 653------------------0110478---00025---64443100355515851777404455028999999998777
Q gi|254780163|r 547 HAV------------------SRLIGAP---PGYVG---FGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDY 602 (798)
Q Consensus 547 ~~v------------------s~LiGap---pGYvG---~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~ 602 (798)
.+. .+++|+= ..-+| --+-|.|..|=+ .|+++|||--....|.++|||.+++
T Consensus 79 ~~~~~~~~~~p~v~lPl~atedr~~G~ldie~al~~G~~~~~PGlLa~Ah~----GVLylDEinll~~~vld~Ll~~~e~ 154 (334)
T PRK13407 79 SSTTMVERPTPVIDLPLGATEDRVVGALDIERALTRGEKAFEPGLLARANR----GYLYIDEVNLLEDHIVDLLLDVAQS 154 (334)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHCCC----CEEEEECHHHCCHHHHHHHHHHHHC
T ss_conf 455534489987678999998664474218888626987788605434028----8678720533338899999988716
Q ss_pred HHCC-CCCCCEECC-CCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCC-CHHHHHH
Q ss_conf 5021-779977612-542999942421455330368988211148899999872887881776828962889-9999999
Q gi|254780163|r 603 GILT-DQSGKKISF-RNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPL-SSDIIRQ 679 (798)
Q Consensus 603 G~lt-d~~Gr~vdf-~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l-~~~~~~~ 679 (798)
|..+ .-.|.++.+ .+.++|-|.|= .. ..++|.++.|++-.|..... +.++-.+
T Consensus 155 G~~~IeReg~s~~~ParF~LVatmNP--------eE----------------g~Lrp~lLDRf~l~v~v~~~~~~~~r~e 210 (334)
T PRK13407 155 GENVVEREGLSIRHPARFVLVGSGNP--------EE----------------GELRPQLLDRFGLSVEVRSPRDVETRVE 210 (334)
T ss_pred CCEEEEECCEEEECCCCCEEEEEECC--------CC----------------CCCCHHHHHHHCEEEEECCCCCHHHHHH
T ss_conf 95799977634603662658982088--------87----------------7759899836100687148788777668
Q ss_pred HHHHHH-----------------HHHHHHH-H--HCCCEEEECHHHHHHHHHCCCCC-CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999-----------------9999999-8--66988999889999999718981-0153267999998623599999
Q gi|254780163|r 680 VVHKFI-----------------MKLELQL-Q--EKGISFHFSEEVINWLVSHGYDV-KMGARPLERIIKEHVKVPLADE 738 (798)
Q Consensus 680 i~~~~l-----------------~~l~~~l-~--~~~i~l~~~~~~~~~l~~~~~~~-~~GAR~l~r~i~~~i~~~la~~ 738 (798)
|+...+ ..+..++ + .+-=.+.++++...+++..+..- ..|.|.--++ +...-+-.
T Consensus 211 iv~r~~~~~~~~~~~~~~~~~e~~~l~~~i~~Ar~~l~~v~~~d~~~~~~~~~~~~~~~~g~Ra~i~l----~r~ARa~A 286 (334)
T PRK13407 211 VITRRDAYDADHDAFMAKWGAEDMQLRGRILGARAALPQLKTPDTVLHDCAALCIALGSDGLRGELTL----LRAARAQA 286 (334)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH----HHHHHHHH
T ss_conf 89999986538799999889899999999999987511468999999999999998589871099999----99999999
Q ss_pred HHCCC
Q ss_conf 96296
Q gi|254780163|r 739 ILFGK 743 (798)
Q Consensus 739 il~~~ 743 (798)
-|.|.
T Consensus 287 aL~Gr 291 (334)
T PRK13407 287 AFEGA 291 (334)
T ss_pred HHCCC
T ss_conf 97499
No 104
>KOG0730 consensus
Probab=99.16 E-value=3.9e-09 Score=84.84 Aligned_cols=213 Identities=26% Similarity=0.419 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHH--HH---------HCCC---CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHH
Q ss_conf 217899999999--86---------2267---787489667641166899999999854898834520144554046753
Q gi|254780163|r 207 VGRHEEINRTIQ--IL---------CRRS---KNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLI 272 (798)
Q Consensus 207 IGRd~EI~riiq--IL---------~RR~---KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ 272 (798)
||=-+++++-+| |+ .|-. -.-++|-|+||-|||.++-.+|.. .++.++++....|.
T Consensus 436 IGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne----------~~~nFlsvkgpEL~ 505 (693)
T KOG0730 436 IGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE----------AGMNFLSVKGPELF 505 (693)
T ss_pred CCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH----------HCCCEEECCCHHHH
T ss_conf 45789999999999861665659998725788754777789986247899998646----------35872641578998
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCH-----HHHHH---HHHCCCCEEEEEECCHHH
Q ss_conf 0634312378999999987203898399973616630155444344777-----88887---663026603887304899
Q gi|254780163|r 273 AGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDA-----SNLLK---PALSSGAVRCIGSTTYSE 344 (798)
Q Consensus 273 ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~-----an~lk---P~L~rg~~~~IgatT~~e 344 (798)
++|.||=|.-+..+++.+++..+.|+|+|||..+.|+-+++++ .+ +.+|. -..+...+-+||||.-..
T Consensus 506 --sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~--~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd 581 (693)
T KOG0730 506 --SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS--GVTDRVLSQLLTEMDGLEALKNVLVIAATNRPD 581 (693)
T ss_pred --HHHCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCCC--CHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHH
T ss_conf --7751825899999999986269837744666666630478755--148999999998700410147089995058810
Q ss_pred HHHHHHCCHHHHH--HC-EEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCH-HHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 9998520111432--00-14430687868999999861276654103512111-78999998654201555646798899
Q gi|254780163|r 345 YRQFFEKDKALVR--RF-QKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKE-AIRAAVQLSVRHFTSRKLPDKAIDVI 420 (798)
Q Consensus 345 y~~~~e~d~al~r--rF-~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~-al~~av~ls~ryi~~r~lPdkAidll 420 (798)
.-|+||.| || +.|+|+-|+.+.-..||+--. ++..+.++ -++..++....| ++. --.+|-
T Consensus 582 -----~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~------kkmp~~~~vdl~~La~~T~g~-SGA----el~~lC 645 (693)
T KOG0730 582 -----MIDPALLRPGRLDRIIYVPLPDLEARLEILKQCA------KKMPFSEDVDLEELAQATEGY-SGA----EIVAVC 645 (693)
T ss_pred -----HCCHHHCCCCCCCEEEEECCCCHHHHHHHHHHHH------HCCCCCCCCCHHHHHHHHCCC-CHH----HHHHHH
T ss_conf -----1269775986533057515834788999999997------339998655699999985467-738----999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
Q ss_conf 8653333211443221136578999866310
Q gi|254780163|r 421 DEAGASQILQPLSKRRKFITEKDIKKTIASM 451 (798)
Q Consensus 421 Dea~a~~~~~~~~~~~~~~~~~~i~~~~~~~ 451 (798)
-|||-...-+... -..|...+..+.+...
T Consensus 646 q~A~~~a~~e~i~--a~~i~~~hf~~al~~~ 674 (693)
T KOG0730 646 QEAALLALRESIE--ATEITWQHFEEALKAV 674 (693)
T ss_pred HHHHHHHHHHHCC--CCCCCHHHHHHHHHHC
T ss_conf 9999999987526--5434489999999850
No 105
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=99.15 E-value=1.7e-09 Score=87.35 Aligned_cols=232 Identities=21% Similarity=0.289 Sum_probs=152.7
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHC-CCCCHHHHEEEEEEEEHHHHHC---
Q ss_conf 754861122217899999999862267787489667641166899999999854-8988345201445540467530---
Q gi|254780163|r 198 VKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVD-GMVPDILLGARIFSLDMGNLIA--- 273 (798)
Q Consensus 198 AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~-~~vp~~l~~~~i~~ld~~~l~a--- 273 (798)
-|=-.+.=|+|-|.-|+-++-=|+---=-..||-|+||||||+.+. ||.-=++ -.-.++-.+..++++|.+.|=|
T Consensus 149 LRP~~f~EiVGQerAI~aLlaK~aSPfPQHiiLYGPPGVGKTTaAR-l~LEe~K~~~~tPF~~DA~FvEVDGtTLRWDPR 227 (616)
T TIGR02903 149 LRPRAFSEIVGQERAIKALLAKLASPFPQHIILYGPPGVGKTTAAR-LALEEAKKLKNTPFAEDAPFVEVDGTTLRWDPR 227 (616)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHH-HHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCC
T ss_conf 2876676433346899999976318886607855733884789999-987621368744761137857515762667741
Q ss_pred -------CC----CCCCHHHHHHHHHHHHH-----------CCCCCEEEEECCHHHHHCCCCCCCCCCCH----------
Q ss_conf -------63----43123789999999872-----------03898399973616630155444344777----------
Q gi|254780163|r 274 -------GT----RYRGDFEERIKKIVKEI-----------ESYANAILYIDEIHTLVGAGSASGISVDA---------- 321 (798)
Q Consensus 274 -------g~----~~rg~fe~r~~~~~~~~-----------~~~~~~ilfideih~ligag~~~g~~~d~---------- 321 (798)
|+ =|.|- |.=|.|. .++|. ||||||| |-||.
T Consensus 228 EvTNPLLGSVHDPIYQGa-----~RDLAE~GvPEPk~GLVT~AHGG-vLFIDEI-----------GELD~lLQnKLLKVL 290 (616)
T TIGR02903 228 EVTNPLLGSVHDPIYQGA-----RRDLAETGVPEPKLGLVTDAHGG-VLFIDEI-----------GELDPLLQNKLLKVL 290 (616)
T ss_pred CCCCCCCCCCCCCCCCCC-----CHHHCCCCCCCCCCCCCCCCCCC-EEEEECH-----------HHHHHHHHHHHHHHH
T ss_conf 014776776257655676-----40110478798989871004775-6765021-----------122278763244432
Q ss_pred -------------------HHHHHHHHCCC---CEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHH
Q ss_conf -------------------88887663026---60388730489999985201114320014430687868999999861
Q gi|254780163|r 322 -------------------SNLLKPALSSG---AVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGI 379 (798)
Q Consensus 322 -------------------an~lkP~L~rg---~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~ 379 (798)
-.-+|-.-..| ++=.|||||-+= =|=++||-.|-.-|.-++.|+++-..|....
T Consensus 291 EDKrV~F~SsYYDpdD~NvPkYIK~lFe~GAPADFvLIGATTr~P----~eINpALRSRCaEvfFePL~p~dI~~Iv~~A 366 (616)
T TIGR02903 291 EDKRVEFSSSYYDPDDENVPKYIKKLFEEGAPADFVLIGATTRDP----EEINPALRSRCAEVFFEPLTPEDIKEIVLNA 366 (616)
T ss_pred CCCEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCH----HHCCHHHHCCCCEEECCCCCHHHHHHHHHHH
T ss_conf 264366532124875378655888852268882568726615882----4405123301431321798878999999998
Q ss_pred HHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH----HHHHHCCCCHHHHHHHHHHCCCCC
Q ss_conf 2766541035121117899999865420155564679889986533332114----432211365789998663102453
Q gi|254780163|r 380 KPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEAGASQILQP----LSKRRKFITEKDIKKTIASMNRSI 455 (798)
Q Consensus 380 ~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea~a~~~~~~----~~~~~~~~~~~~i~~~~~~~~~gi 455 (798)
+.+. +|...+.+-+.+.++. |.+| |||.+|=-+=+.++-.. .....-.|+.+||.++|.. ..=+
T Consensus 367 A~kl----nv~L~~gV~e~Ia~YT---ieGR----kAvnILAD~Yg~~ly~~~~~~~~~d~~~I~~~dv~evv~~-sRl~ 434 (616)
T TIGR02903 367 AEKL----NVKLAEGVEELIARYT---IEGR----KAVNILADVYGYALYKKAEALKEEDKVTITADDVKEVVQI-SRLS 434 (616)
T ss_pred HHHC----CCCCCCCHHHHHHHCC---CCCH----HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHH-CCCC
T ss_conf 8861----7700036487872147---1311----2223465467676530455567777426618677767753-0457
Q ss_pred CHHHHHCC
Q ss_conf 10111001
Q gi|254780163|r 456 HTTSFSRD 463 (798)
Q Consensus 456 p~~~~~~~ 463 (798)
|-.+...+
T Consensus 435 Py~~~~~~ 442 (616)
T TIGR02903 435 PYEKVKAS 442 (616)
T ss_pred CHHHCCCC
T ss_conf 50112468
No 106
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=99.14 E-value=1.3e-09 Score=88.32 Aligned_cols=198 Identities=18% Similarity=0.212 Sum_probs=132.7
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE-CCCCCHHHHHHHHHHHHHHCCC---------CCHH-----HHEE
Q ss_conf 77548611222178999999998622677874896-6764116689999999985489---------8834-----5201
Q gi|254780163|r 197 KVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYV-GDPGVGKTAIAEGFAKQIVDGM---------VPDI-----LLGA 261 (798)
Q Consensus 197 ~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~lv-G~~gvGktaive~la~~i~~~~---------vp~~-----l~~~ 261 (798)
+-|-..++-|||-+.-++-+...|..-+=....|. |.-|||||+++.-||.-+.-.+ ++.. =+..
T Consensus 9 k~RP~~f~e~vGQ~~v~~~L~nal~~~rl~haylf~G~rGvGKTt~ARi~Ak~lNC~~~~~~~pcg~C~~C~~i~~g~~~ 88 (717)
T PRK08853 9 KWRPTQFKEVVGQSHVLTALENALAHNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETGITSTPCGQCATCKEIDEGRFV 88 (717)
T ss_pred HHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCC
T ss_conf 51798565513859999999999970997405761088988898999999998678999999978887026767447877
Q ss_pred EEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCC---CCC-EEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCC--CCEE
Q ss_conf 445540467530634312378999999987203---898-3999736166301554443447778888766302--6603
Q gi|254780163|r 262 RIFSLDMGNLIAGTRYRGDFEERIKKIVKEIES---YAN-AILYIDEIHTLVGAGSASGISVDASNLLKPALSS--GAVR 335 (798)
Q Consensus 262 ~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~---~~~-~ilfideih~ligag~~~g~~~d~an~lkP~L~r--g~~~ 335 (798)
-++++|.+ +.+|- +.++.+++.+.- .+. -|..|||+|+| +-.+-|-|..-|.. .-+.
T Consensus 89 d~~EiDaA------s~~~v--dd~rel~~~~~y~p~~~~yKvyiiDEvHml---------s~~afnAlLKtlEEPP~hv~ 151 (717)
T PRK08853 89 DLLEIDAA------SRTKV--EDTRELLDNVQYKPARGRFKVYLIDEVHML---------SRHSFNALLKTLEEPPEYVK 151 (717)
T ss_pred CEEEECCC------CCCCH--HHHHHHHHHCCCCCCCCCEEEEEEECHHHC---------CHHHHHHHHHHHCCCCCCEE
T ss_conf 52454056------56788--999999985554887785479998305443---------89999999876037875648
Q ss_pred EEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 88730489999985201114320014430687868999999861276654103512111789999986542015556467
Q gi|254780163|r 336 CIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDK 415 (798)
Q Consensus 336 ~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdk 415 (798)
+|-|||.- +|.- . ..-.|-|....+--+.++-..-|..+... -++.|.++||....+.+.--+.|
T Consensus 152 FilaTT~~--~kip--~-TilSRc~~f~l~~~~~~~i~~~l~~i~~~----E~i~~~~~al~~ia~~a~Gs~Rd------ 216 (717)
T PRK08853 152 FLLATTDP--QKLP--V-TILSRCLQFHLKPISVDQIHQQLDFVLDK----EQVSAEARALGLIAHAADGSMRD------ 216 (717)
T ss_pred EEEECCCH--HHCC--H-HHHHHHHHCCCCCCCHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHCCCCHHH------
T ss_conf 99843873--4373--8-89876544232689999999999999997----59876999999999976883778------
Q ss_pred HHHHHHHHHHH
Q ss_conf 98899865333
Q gi|254780163|r 416 AIDVIDEAGAS 426 (798)
Q Consensus 416 AidllDea~a~ 426 (798)
|+.|+|.|-|.
T Consensus 217 alsl~dqaia~ 227 (717)
T PRK08853 217 ALSLTDQAIAL 227 (717)
T ss_pred HHHHHHHHHHH
T ss_conf 88899999996
No 107
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.13 E-value=2.1e-09 Score=86.70 Aligned_cols=201 Identities=22% Similarity=0.316 Sum_probs=138.3
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE-ECCCCCHHHHHHHHHHHHHHCCCCCHH-----------HHEE
Q ss_conf 5887754861122217899999999862267787489-667641166899999999854898834-----------5201
Q gi|254780163|r 194 LTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLY-VGDPGVGKTAIAEGFAKQIVDGMVPDI-----------LLGA 261 (798)
Q Consensus 194 LTe~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~l-vG~~gvGktaive~la~~i~~~~vp~~-----------l~~~ 261 (798)
|..+-|--.++-|||-+.-++.+...+.+.+=....| .|+.|||||+++.-+|..+...+-++. -...
T Consensus 8 L~RKYRPk~F~EVIGQe~Vv~tL~nAI~~gRIaHAYLF~GPRGvGKTT~ARIfAKaLNC~~~~d~~~pC~~C~~~~~~s~ 87 (718)
T PRK07133 8 LYRKYRPKKFDEIKGQDHIIETLKNIIKSGKISHAYLFSGPHGTGKTSVAKIFANALNCSHKTDLIEPCQNCIENFNNNL 87 (718)
T ss_pred HHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCC
T ss_conf 99872899754422859999999999974997505862389986889999999999679999999997702143047898
Q ss_pred EEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCC---CCC-EEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCC--CCEE
Q ss_conf 445540467530634312378999999987203---898-3999736166301554443447778888766302--6603
Q gi|254780163|r 262 RIFSLDMGNLIAGTRYRGDFEERIKKIVKEIES---YAN-AILYIDEIHTLVGAGSASGISVDASNLLKPALSS--GAVR 335 (798)
Q Consensus 262 ~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~---~~~-~ilfideih~ligag~~~g~~~d~an~lkP~L~r--g~~~ 335 (798)
-++++|. ++-+|= +.++.+++.+.- .+. -|.-|||.|+| +-.|.|-|.-.|.. ....
T Consensus 88 DViEIDA------ASn~gV--DdIReLie~v~y~P~~gkYKVyIIDEvHML---------S~~AfNALLKtLEEPP~hvv 150 (718)
T PRK07133 88 DIIEMDA------ASNNGV--DEIRELRENVKNLPQISKYKIYIIDEVHML---------SKSAFNALLKTLEEPPKHVI 150 (718)
T ss_pred CEEEECC------CCCCCH--HHHHHHHHHHCCCCCCCCEEEEEEECCCCC---------CHHHHHHHHHHHCCCCCCCE
T ss_conf 7377545------566888--999999998255887787249999662007---------99999999985027987827
Q ss_pred EEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 88730489999985201114320014430687868999999861276654103512111789999986542015556467
Q gi|254780163|r 336 CIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDK 415 (798)
Q Consensus 336 ~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdk 415 (798)
.|-|||.-+ |.. +..-.|-|+....-.+.++-..-|+.+.. .-++.|.++||...++.|.-=+.|
T Consensus 151 FILaTTep~--KIP---~TIlSRCQrFdFkrI~~~~I~~~L~~I~~----kE~I~~e~eAL~lIA~~a~GSmRD------ 215 (718)
T PRK07133 151 FILATTDVQ--KIP---LTILSRVQRFNFRRISEDVIVHQLENILE----KEKIKYEKNALKLIASLASGSLRD------ 215 (718)
T ss_pred EEEEECCHH--HCC---HHHHHCCEEEECCCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHCCCCHHH------
T ss_conf 999708825--484---87741220335888999999999999999----859977899999999976884888------
Q ss_pred HHHHHHHHHHH
Q ss_conf 98899865333
Q gi|254780163|r 416 AIDVIDEAGAS 426 (798)
Q Consensus 416 AidllDea~a~ 426 (798)
|+.+||.+.+.
T Consensus 216 AlSlLDQv~~f 226 (718)
T PRK07133 216 ALSIADQVSIF 226 (718)
T ss_pred HHHHHHHHHHH
T ss_conf 98799999985
No 108
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=99.13 E-value=1.5e-09 Score=87.77 Aligned_cols=227 Identities=23% Similarity=0.382 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHHH---HCCCCC---CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCC
Q ss_conf 221789999999986---226778---74896676411668999999998548988345201445540467530634312
Q gi|254780163|r 206 LVGRHEEINRTIQIL---CRRSKN---NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRG 279 (798)
Q Consensus 206 VIGRd~EI~riiqIL---~RR~KN---n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg 279 (798)
-||-++ |++-+|+- +|.+|- ..+|.||||+|||++++=+|.-+-. +.+|-| ...
T Consensus 6 FiGQ~~-vk~~L~l~I~AAk~R~e~LDH~LL~GPPGLGKTTLA~IiA~Emg~--------~l~iTs--GP~--------- 65 (305)
T TIGR00635 6 FIGQEK-VKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV--------NLKITS--GPA--------- 65 (305)
T ss_pred CCCCHH-HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC--------CCEEEE--CCC---------
T ss_conf 058288-999999999999824897341663175687467899999998389--------326740--675---------
Q ss_pred HHHHH---HHHHHHHHCCCCCEEEEECCHHHH--------------------HCCCCCCC-CCCCHHHHHHHHHCCCCEE
Q ss_conf 37899---999998720389839997361663--------------------01554443-4477788887663026603
Q gi|254780163|r 280 DFEER---IKKIVKEIESYANAILYIDEIHTL--------------------VGAGSASG-ISVDASNLLKPALSSGAVR 335 (798)
Q Consensus 280 ~fe~r---~~~~~~~~~~~~~~ilfideih~l--------------------igag~~~g-~~~d~an~lkP~L~rg~~~ 335 (798)
+ +| |-+++--++ .++ ||||||||=| ||-|-++- -.||.+ -+.
T Consensus 66 -L-~kPgDlaaiLt~L~-~gD-VLFIDEIHRL~p~~EE~LYpAMEDF~lDi~IG~Gp~Ar~v~ldLp----------PFT 131 (305)
T TIGR00635 66 -L-EKPGDLAAILTNLE-EGD-VLFIDEIHRLSPAIEELLYPAMEDFRLDIVIGKGPSARSVRLDLP----------PFT 131 (305)
T ss_pred -C-CCHHHHHHHHHHCC-CCC-EEECCHHHHCCHHHHHHCCCCCCCEEEEEEEECCCCCCEEEECCC----------CCC
T ss_conf -5-47578999997056-896-310125650483345310530012178778712898525760686----------944
Q ss_pred EEEECCHHHHHHHHHCCHHHHHHCEEE-EECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 887304899999852011143200144-3068786899999986127665410351211178999998654201555646
Q gi|254780163|r 336 CIGSTTYSEYRQFFEKDKALVRRFQKI-DVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPD 414 (798)
Q Consensus 336 ~IgatT~~ey~~~~e~d~al~rrF~~i-~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPd 414 (798)
.|||||-.-- . -.| |..||=.| +++==|++|=..|+. ++-.-=+|.+..++..+..+-| |-=|-
T Consensus 132 LvGATTR~G~--l--t~P-LrdRFG~~~rl~fY~~~EL~~Iv~----R~A~~L~~ei~~~~a~~IArrS------RGTPR 196 (305)
T TIGR00635 132 LVGATTRAGM--L--TSP-LRDRFGIILRLEFYTPEELAEIVS----RSAGLLNIEIEQEAALEIARRS------RGTPR 196 (305)
T ss_pred CCCCCCCCCC--C--CCC-HHHHHHHHHHCCCCCHHHHHHHHH----HHHHHCCCCCCHHHHHHHHHHC------CCCHH
T ss_conf 2000034774--1--031-334544745402689878999987----5334414300778999998754------78637
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHCCCCHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCHHHHHHHHHHH
Q ss_conf 7988998653333211443--22113657899986631024531011100112334210000246653458999999999
Q gi|254780163|r 415 KAIDVIDEAGASQILQPLS--KRRKFITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSS 492 (798)
Q Consensus 415 kAidllDea~a~~~~~~~~--~~~~~~~~~~i~~~~~~~~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~v~~~ 492 (798)
=|+.||- |+...+ .....|+.+-..+.+... +|-..-+..-|.+.|..|-.+.. |-+--+++++-+
T Consensus 197 IAnRLLR------RVRDfA~V~~~~~I~~~i~~~AL~~L--~iD~~GLd~~D~~~L~~li~~f~----GGPVGl~tlA~a 264 (305)
T TIGR00635 197 IANRLLR------RVRDFAQVRGQGVITRDIALKALEML--DIDELGLDEIDRKLLSVLIEKFQ----GGPVGLDTLAAA 264 (305)
T ss_pred HHHHHHH------HHHHHHHHHCCCCCCHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHCC----CCCHHHHHHHHH
T ss_conf 8887767------66448887267873889999998862--53330057998999999998628----985238989988
Q ss_pred H
Q ss_conf 8
Q gi|254780163|r 493 I 493 (798)
Q Consensus 493 i 493 (798)
+
T Consensus 265 ~ 265 (305)
T TIGR00635 265 L 265 (305)
T ss_pred H
T ss_conf 5
No 109
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.13 E-value=2.1e-09 Score=86.76 Aligned_cols=215 Identities=23% Similarity=0.274 Sum_probs=142.0
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC-EEEECCCCCHHHHHHHHHHHHHHCCC----CCH----H-------H--
Q ss_conf 7754861122217899999999862267787-48966764116689999999985489----883----4-------5--
Q gi|254780163|r 197 KVKKGKVDILVGRHEEINRTIQILCRRSKNN-PLYVGDPGVGKTAIAEGFAKQIVDGM----VPD----I-------L-- 258 (798)
Q Consensus 197 ~AreGKLDPVIGRd~EI~riiqIL~RR~KNn-~~lvG~~gvGktaive~la~~i~~~~----vp~----~-------l-- 258 (798)
+-|-..++-|||-+.-++.+-.-+..-+=.+ -++-|+.|||||+.+.-+|..+.-.. -|. . +
T Consensus 14 KyRP~~f~~liGQ~~~~~~l~n~i~~~~~~~aylf~G~rG~GKTt~Ari~ak~lnc~~~~~~~~~~~~c~~c~~c~~i~~ 93 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEKCTNCISFNN 93 (507)
T ss_pred CCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 00799765623939999999999973996634774587997889999999999679998888998888888767899865
Q ss_pred -HEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCC---CC-EEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHC--C
Q ss_conf -2014455404675306343123789999999872038---98-399973616630155444344777888876630--2
Q gi|254780163|r 259 -LGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESY---AN-AILYIDEIHTLVGAGSASGISVDASNLLKPALS--S 331 (798)
Q Consensus 259 -~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~---~~-~ilfideih~ligag~~~g~~~d~an~lkP~L~--r 331 (798)
...-|+++|.++ -+| =+.++.+++.+.-. +. -|..|||+|+| +-+|-|-|.-.|. -
T Consensus 94 ~~~~dv~EiDaas------~~g--v~~ir~l~~~~~~~p~~~~~kv~iidE~hml---------s~~a~nallktlEepp 156 (507)
T PRK06645 94 HNHPDIIEIDAAS------KTS--VDDIRRIIESAEYKPLQGKHKIFIIDEVHML---------SKGAFNALLKTLEEPP 156 (507)
T ss_pred CCCCCEEEEECCC------CCC--HHHHHHHHHHCCCCCCCCCEEEEEECCHHHC---------CHHHHHHHHHHHHCCC
T ss_conf 8999859963788------888--8999999863551787674358995214224---------8999999999742786
Q ss_pred CCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCC
Q ss_conf 66038873048999998520111432001443068786899999986127665410351211178999998654201555
Q gi|254780163|r 332 GAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRK 411 (798)
Q Consensus 332 g~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~ 411 (798)
..+.+|-|||.- +|. +. ..-.|-|+.....-+.++-..-|..+... -++.++++||...++.|.-=+.|
T Consensus 157 ~~~~Fi~atte~--~ki--p~-ti~srcq~f~~~~i~~~~i~~~l~~i~~~----E~~~~~~~al~~ia~~a~Gs~RD-- 225 (507)
T PRK06645 157 PHIIFIFATTEV--QKI--PA-TIISRCQRYDLRRLSFEEIFKLLEYITKQ----ENLKADIEALRIIAYKSEGSARD-- 225 (507)
T ss_pred CCEEEEEECCCH--HHC--CH-HHHHHCEEEEEECCCHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHCCCCHHH--
T ss_conf 443899974853--648--37-88854327875459979999999999997----68777789999999855998678--
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 6467988998653333211443221136578999866
Q gi|254780163|r 412 LPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTI 448 (798)
Q Consensus 412 lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~ 448 (798)
|+.|||.|-+.. ......++.++|.+++
T Consensus 226 ----alslldqai~~~-----~~~~~~I~~~~V~~ML 253 (507)
T PRK06645 226 ----AVSILDQAASMS-----AKSDNIISPQVINQML 253 (507)
T ss_pred ----HHHHHHHHHHHH-----CCCCCCCCHHHHHHHH
T ss_conf ----999999999975-----4898702699999983
No 110
>KOG0736 consensus
Probab=99.11 E-value=1.1e-09 Score=88.70 Aligned_cols=96 Identities=27% Similarity=0.416 Sum_probs=66.5
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCC---CCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECC
Q ss_conf 068861432003889999987304773377206886124---65301104780002564443100355515851777404
Q gi|254780163|r 508 GCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMER---HAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDE 584 (798)
Q Consensus 508 g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~---~~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DE 584 (798)
.+||+-||+|+|||.+.++.|..++.++..+|+.|+... |+-++|. ...+..|+.+-+|++|-.
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~-------------~~f~~a~~~~pavifl~~ 498 (953)
T KOG0736 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQ-------------AIFSRARRCSPAVLFLRN 498 (953)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHCCCCHHHHHHH-------------HHHHHHHHCCCEEEEEEC
T ss_conf 3799867999875799999999838725701389886436331378999-------------999987526862898722
Q ss_pred HHHCC-----------HHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECC
Q ss_conf 45502-----------899999999877750217799776125429999424
Q gi|254780163|r 585 IEKSH-----------PDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTN 625 (798)
Q Consensus 585 iEKAh-----------~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN 625 (798)
++--- ..+++.+++ +.--+-+|..+|+|.|++
T Consensus 499 ~dvl~id~dgged~rl~~~i~~~ls---------~e~~~~~~~~~ivv~t~~ 541 (953)
T KOG0736 499 LDVLGIDQDGGEDARLLKVIRHLLS---------NEDFKFSCPPVIVVATTS 541 (953)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHH---------CCCCCCCCCCEEEEEECC
T ss_conf 4245533777442779999999972---------023567799659999625
No 111
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=99.11 E-value=1.7e-09 Score=87.41 Aligned_cols=226 Identities=27% Similarity=0.371 Sum_probs=158.4
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCC-CCHHHHEEEEEEEEHH
Q ss_conf 442588775486112221789999999986226778748966764116689999999985489-8834520144554046
Q gi|254780163|r 191 CVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGM-VPDILLGARIFSLDMG 269 (798)
Q Consensus 191 g~DLTe~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~-vp~~l~~~~i~~ld~~ 269 (798)
|.=|||+.|=..+|=+||=|+=|+-+-=-||--+==.+|+-|+|||||||=+ .|+..=+..+ ..++=-+..++++|.+
T Consensus 52 t~PL~Ek~RP~SF~EIiGQe~GI~ALKAALCGPNPQHVIiYGPPGVGKTAAA-RLVLeeAKk~~~SPFke~A~FVEiDAT 130 (532)
T TIGR02902 52 TEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAA-RLVLEEAKKNPASPFKEEAAFVEIDAT 130 (532)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHH-HHHHHHHHCCCCCCCCCCCEEEEEECC
T ss_conf 7887746677763325673556899998606868963898788696178999-999998650875378988668985051
Q ss_pred HHHCCCCCCCHHHHH------HHHHHHHH---------------------CCCCCEEEEECCH---HHH-----------
Q ss_conf 753063431237899------99999872---------------------0389839997361---663-----------
Q gi|254780163|r 270 NLIAGTRYRGDFEER------IKKIVKEI---------------------ESYANAILYIDEI---HTL----------- 308 (798)
Q Consensus 270 ~l~ag~~~rg~fe~r------~~~~~~~~---------------------~~~~~~ilfidei---h~l----------- 308 (798)
.+ -|-|| +=+|-|=+ +++|. ||||||| |=+
T Consensus 131 T~--------RFDERGIADPLIGSVHDPIYQGAGplG~AGIPQPK~GAVT~AHGG-vLFIDEIGELHP~~MNKLLKVLED 201 (532)
T TIGR02902 131 TA--------RFDERGIADPLIGSVHDPIYQGAGPLGVAGIPQPKPGAVTKAHGG-VLFIDEIGELHPVQMNKLLKVLED 201 (532)
T ss_pred CC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEECCCCCCCHHHHHHHHHHHHC
T ss_conf 03--------602146666567761585333765457885575877763202586-551212466582435314113302
Q ss_pred ----HC-CC-CCCCCCCCHHHHHHHHHCCC---CEEEEEECC--HHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHH
Q ss_conf ----01-55-44434477788887663026---603887304--899999852011143200144306878689999998
Q gi|254780163|r 309 ----VG-AG-SASGISVDASNLLKPALSSG---AVRCIGSTT--YSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVK 377 (798)
Q Consensus 309 ----ig-ag-~~~g~~~d~an~lkP~L~rg---~~~~IgatT--~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~ 377 (798)
+. |- +++ +-..-+-++-.-..| ++|.||||| |+ |=.|||-.|-=-|-=.+...||--.|=+
T Consensus 202 RKVFLdSAYY~s~--~pniP~hI~dIFqnGlPADFRLiGATTR~Pe------EIpPAlRSRC~EIFFR~L~~EEi~~iAk 273 (532)
T TIGR02902 202 RKVFLDSAYYSSE--DPNIPSHIRDIFQNGLPADFRLIGATTRNPE------EIPPALRSRCVEIFFRPLLKEEIKEIAK 273 (532)
T ss_pred CCCHHHCCCCCCC--CCCCCHHHHHHHCCCCCCCEECCCCCCCCCC------CCCHHHHCCCEEEEECCCCHHHHHHHHH
T ss_conf 2200001235877--7865427899720678734012133369877------6783465052267716888789999987
Q ss_pred HHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 612766541035121117899999865420155564679889986533332114432211365789998663
Q gi|254780163|r 378 GIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIA 449 (798)
Q Consensus 378 ~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~ 449 (798)
.-.++- ++.+..+|++....+|. ++| -||.|+--||=-+ ..+.|+.|..+||.-++.
T Consensus 274 ~AaeKI----g~~l~~~Al~~I~~Ya~---nGR----EAvN~~QLAaG~a----~~E~Rk~I~~~DieWV~~ 330 (532)
T TIGR02902 274 NAAEKI----GLNLEKEALDLIAKYAS---NGR----EAVNLVQLAAGIA----LGENRKRILAEDIEWVIE 330 (532)
T ss_pred HHHHHC----CCCCCHHHHHHHHHHHC---CCC----HHHHHHHHHHHHE----ECCCCCEECHHHHHHHHH
T ss_conf 656530----46547547999998740---540----6778999973140----128876120546445553
No 112
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.10 E-value=1.7e-09 Score=87.39 Aligned_cols=153 Identities=29% Similarity=0.400 Sum_probs=108.3
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCC-------HHHHHC
Q ss_conf 5787406886143200388999998730477337720688612465301104780002564443100-------355515
Q gi|254780163|r 503 PNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILA-------DSVDQN 575 (798)
Q Consensus 503 ~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lt-------e~vr~~ 575 (798)
-.||+ |+-|.+|||||-+-.+||...+..++|||.||-++ .--|.|| |+--++||+.- .+.| +
T Consensus 1542 v~kpi---lLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTd---L~DLfGs---d~Pve~~Gef~w~dapfL~amr-~ 1611 (4600)
T COG5271 1542 VGKPI---LLEGSPGVGKTSLITALARKTGKKLIRINLSEQTD---LCDLFGS---DLPVEEGGEFRWMDAPFLHAMR-D 1611 (4600)
T ss_pred CCCCE---EECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCH---HHHHHCC---CCCCCCCCEEEECCCHHHHHHH-C
T ss_conf 28854---62279986678999999997457247863201102---8987377---8875567616742468999853-4
Q ss_pred CCEEEEECCHHHCCHHHHHHHHHHHHHHHC-C-CCCCCEECCC-CEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 851777404455028999999998777502-1-7799776125-429999424214553303689882111488999998
Q gi|254780163|r 576 PYSVVLLDEIEKSHPDVLNILLQIMDYGIL-T-DQSGKKISFR-NVILIMTTNAGALEMSKARIGFGSSRNDDADKEALR 652 (798)
Q Consensus 576 P~sVvl~DEiEKAh~~v~~~llqild~G~l-t-d~~Gr~vdf~-n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~ 652 (798)
. .-||+||+--|..+|+.=|=-.||.-+= - -....+.|+. |..|+.+-|--.+ .-=|
T Consensus 1612 G-~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~q-------------------ggGR 1671 (4600)
T COG5271 1612 G-GWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQ-------------------GGGR 1671 (4600)
T ss_pred C-CEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCEEEEEECCCHHC-------------------CCCC
T ss_conf 9-8799624103278899888998850144256311332521687055420481102-------------------7985
Q ss_pred HHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 7288788177682896288999999999999999
Q gi|254780163|r 653 NFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIM 686 (798)
Q Consensus 653 ~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~ 686 (798)
+-.+--|+||+ .+|.-..|+.+++..|+..+.-
T Consensus 1672 KgLPkSF~nRF-svV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1672 KGLPKSFLNRF-SVVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred CCCCHHHHHHH-HEEEECCCCCCHHHHHHHHHCC
T ss_conf 66878886221-1577503453009999985177
No 113
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=7.9e-09 Score=82.61 Aligned_cols=214 Identities=25% Similarity=0.334 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHHHCCCCC-------------CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHC
Q ss_conf 21789999999986226778-------------74896676411668999999998548988345201445540467530
Q gi|254780163|r 207 VGRHEEINRTIQILCRRSKN-------------NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIA 273 (798)
Q Consensus 207 IGRd~EI~riiqIL~RR~KN-------------n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a 273 (798)
=|=|+.|+.+-++.-=--|| .++|-|+||.|||-++-.+|... ++.++-+..+.||
T Consensus 154 GGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T----------~AtFIrvvgSElV- 222 (406)
T COG1222 154 GGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT----------DATFIRVVGSELV- 222 (406)
T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCC----------CCEEEEECCHHHH-
T ss_conf 58899999999984033668889997499999712766899975889999987205----------8669994219999-
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCC---------HHHHHHHHHCCCCEEEEEECCHHH
Q ss_conf 63431237899999998720389839997361663015544434477---------788887663026603887304899
Q gi|254780163|r 274 GTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVD---------ASNLLKPALSSGAVRCIGSTTYSE 344 (798)
Q Consensus 274 g~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d---------~an~lkP~L~rg~~~~IgatT~~e 344 (798)
.||-||=-.-++.++.-++.+.+.|+|||||..|=+.-..++++.| .-|-|--.=.||++++|+||.--.
T Consensus 223 -qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D 301 (406)
T COG1222 223 -QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPD 301 (406)
T ss_pred -HHHHCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCC
T ss_conf -9983411699999999874149849998311223111136888850999999999998605889788768998558855
Q ss_pred HHHHHHCCHHHHH--HCE-EEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCH-HHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 9998520111432--001-4430687868999999861276654103512111-78999998654201555646798899
Q gi|254780163|r 345 YRQFFEKDKALVR--RFQ-KIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKE-AIRAAVQLSVRHFTSRKLPDKAIDVI 420 (798)
Q Consensus 345 y~~~~e~d~al~r--rF~-~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~-al~~av~ls~ryi~~r~lPdkAidll 420 (798)
--||||-| ||. +|.++-|+.+.-.+||+--..+ ...+++ -++..+++..-+ -+--|
T Consensus 302 -----~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk------M~l~~dvd~e~la~~~~g~------sGAdl--- 361 (406)
T COG1222 302 -----ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK------MNLADDVDLELLARLTEGF------SGADL--- 361 (406)
T ss_pred -----CCCHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHH------CCCCCCCCHHHHHHHCCCC------CHHHH---
T ss_conf -----557665088754530116898978999999987621------4676676999998753899------56779---
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 86533332114432211365789998663102
Q gi|254780163|r 421 DEAGASQILQPLSKRRKFITEKDIKKTIASMN 452 (798)
Q Consensus 421 Dea~a~~~~~~~~~~~~~~~~~~i~~~~~~~~ 452 (798)
--.|.-+-+-+..++|..|+.+|....+.+..
T Consensus 362 kaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 362 KAICTEAGMFAIRERRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred HHHHHHHHHHHHHHCCCEECHHHHHHHHHHHH
T ss_conf 99999875999986047333999999999997
No 114
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.09 E-value=2.8e-06 Score=64.30 Aligned_cols=62 Identities=18% Similarity=0.176 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 6989999999999999980998125999878787377429999999849998999999983000
Q gi|254780163|r 82 PTSSFQRVVQRAVLHVQSTGRGIVTGANILVALFSEPDSHATYFLQEQEMTLYDAVNFISHGIS 145 (798)
Q Consensus 82 ~S~~l~rVL~~A~~~A~~~G~~~I~~eHLLLALL~e~ds~a~~iL~~~gis~~~v~~~i~~~~~ 145 (798)
+|++++.+|+.|...|..+++++|+++|||+||+.+. .+..+|...+++...+...+...+.
T Consensus 2 ~s~~l~~~L~~A~~~A~~~~H~~v~~EHlLlaLl~~~--~~~~~L~~~~~d~~~l~~~l~~~i~ 63 (758)
T PRK11034 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNP--SAREALEACSVDLVALRQELEAFIE 63 (758)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC--HHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 8979999999999999982998322999999998694--1899999859999999999999997
No 115
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=5.1e-09 Score=83.95 Aligned_cols=163 Identities=24% Similarity=0.388 Sum_probs=94.2
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC-CCC----E--EEEEHHHHHCCC
Q ss_conf 246653458999999999877520445657874068861432003889999987304-773----3--772068861246
Q gi|254780163|r 475 LGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL-GVQ----L--LRFDMSEYMERH 547 (798)
Q Consensus 475 l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~-~~~----l--ir~dmsey~e~~ 547 (798)
+-+.||||+.++..+.+++... |---++||.||.|+||+.+|..+|..+ ... . .++.-...-+-|
T Consensus 2 ~F~~iiGq~~~~~~L~~ai~~~--------rl~hAyLF~Gp~G~GK~~~A~~fa~~Ll~~~~~~~~~~~ri~~~nHPDl~ 73 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIEQN--------RIAPAYLFAGPEGVGRKLAALRFIEGLLSQGSPSKNIRRRLEEGNHPDLL 73 (314)
T ss_pred CCCCCCCCHHHHHHHHHHHHCC--------CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCEE
T ss_conf 8331259499999999999859--------96744877899983299999999999857899997665587518999778
Q ss_pred CC-------CHHCC-----------CCCHHCCCCCCCCCCHHHHHCC----CEEEEECCHHHCCHHHHHHHHHHHHHHHC
Q ss_conf 53-------01104-----------7800025644431003555158----51777404455028999999998777502
Q gi|254780163|r 548 AV-------SRLIG-----------APPGYVGFGQGGILADSVDQNP----YSVVLLDEIEKSHPDVLNILLQIMDYGIL 605 (798)
Q Consensus 548 ~v-------s~LiG-----------appGYvG~~egg~Lte~vr~~P----~sVvl~DEiEKAh~~v~~~llqild~G~l 605 (798)
-| .+++. ..|..++-++=-.+.+.+.++| |.|+++|+.|+...+-.|.||..|+|=
T Consensus 74 ~i~P~~~~~g~~~~~~~~~~~~~~~~~~~~I~idqIR~l~~~l~~~p~~~~~kVvII~~ae~m~~~AaNaLLKtLEEP-- 151 (314)
T PRK07399 74 WVEPTYQHQGKLITASEAEEAGLKRKSPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEP-- 151 (314)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCC--
T ss_conf 860562003454557789876530268777879999999999731885688479998897871999999999861478--
Q ss_pred CCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 177997761254299994242145533036898821114889999987288788177682896288999999999999
Q gi|254780163|r 606 TDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHK 683 (798)
Q Consensus 606 td~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~ 683 (798)
++ +++|+.|+|.. ..-|--..|. .+|.|+||+.+++.+++..
T Consensus 152 --~~-------~~fILit~~~~--------------------------~lLpTI~SRC-Q~i~F~~l~~~~i~~~L~~ 193 (314)
T PRK07399 152 --GN-------GTLILIAPSPE--------------------------SLLPTIVSRC-QIIPFYRLSDEQLEQVLKR 193 (314)
T ss_pred --CC-------CEEEEEECCHH--------------------------HCCHHHHCCC-EEEECCCCCHHHHHHHHHH
T ss_conf --78-------56999979936--------------------------4914664187-5633899899999999997
No 116
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.07 E-value=6.5e-09 Score=83.18 Aligned_cols=225 Identities=21% Similarity=0.311 Sum_probs=122.7
Q ss_pred HHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCC---------CEE-----------E
Q ss_conf 65345899999999987752044565787406886143200388999998730477---------337-----------7
Q gi|254780163|r 478 VVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGV---------QLL-----------R 537 (798)
Q Consensus 478 ~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~---------~li-----------r 537 (798)
.|.||+.|..+ +..+-||-+ .+|+.||+|+|||.||+.|...+.. .-| .
T Consensus 192 dv~Gq~~akra----leIAAAGgH-------nlLl~GpPG~GKTMlA~rlp~ILPpLt~~e~lEv~~I~Svag~~~~~~~ 260 (506)
T PRK09862 192 DVVGQEQGKRG----LEITAAGGH-------NLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQ 260 (506)
T ss_pred HHCCCHHHHHH----HHHHHCCCC-------CEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 53697999999----999744688-------6598769994598999775123899898999999999987189877775
Q ss_pred EEHHHHHCCCCCCHHCCCCCHHCCCC---CCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCC-CCEE
Q ss_conf 20688612465301104780002564---4431003555158517774044550289999999987775021779-9776
Q gi|254780163|r 538 FDMSEYMERHAVSRLIGAPPGYVGFG---QGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQS-GKKI 613 (798)
Q Consensus 538 ~dmsey~e~~~vs~LiGappGYvG~~---egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~-Gr~v 613 (798)
+.---|..+|.-+ |.++-+|-+ .-|..+ .--+.|++|||+=--.++|++.|-|-|++|.++=+. +.++
T Consensus 261 ~~~rPfR~PHHs~----S~~aliGGG~~~~PGEIS----LAH~GVLFLDElpEF~r~vLe~LRqPLE~g~I~IsRa~~~~ 332 (506)
T PRK09862 261 WRQRPFRSPHHSA----SLTAMVGGGAIPGPGEIS----LAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKI 332 (506)
T ss_pred CCCCCEECCCCCC----CHHHHHCCCCCCCCCCEE----ECCCCEEEECCHHCCCHHHHHHHHHHHCCCEEEEEECCCEE
T ss_conf 4668503788765----476663799999997222----13575788455000688899987762247759999668679
Q ss_pred CC-CCEEEEEECCCCHHHHHHCCCCC-CCCCC--HHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHH---------H
Q ss_conf 12-54299994242145533036898-82111--488999998728878817768289628899999999---------9
Q gi|254780163|r 614 SF-RNVILIMTTNAGALEMSKARIGF-GSSRN--DDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQ---------V 680 (798)
Q Consensus 614 df-~n~iii~TsN~G~~~~~~~~~g~-~~~~~--~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~---------i 680 (798)
.| .+-.+|+++|- -..|+ ..... .......-.+.++--|+.|||-.|.-...+...+.. -
T Consensus 333 ~~PA~F~LVaAmNP-------CPCG~~~~~~~~Ct~~~~~rY~~rlSGPllDRiDl~v~v~~~~~~~l~~~~~~~esS~~ 405 (506)
T PRK09862 333 TYPARFQLVAAMNP-------SPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSAT 405 (506)
T ss_pred EECCHHHHEHHCCC-------CCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHCEEEEEECCCCCHHHHHCCCCCCCCHHH
T ss_conf 86153311110378-------88888999977789899999986566221303647998168996666324898988899
Q ss_pred HHHHHHHHHHHHHHC-------------CCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 999999999999866-------------988999889999999718981015326799999
Q gi|254780163|r 681 VHKFIMKLELQLQEK-------------GISFHFSEEVINWLVSHGYDVKMGARPLERIIK 728 (798)
Q Consensus 681 ~~~~l~~l~~~l~~~-------------~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~ 728 (798)
+......-.++..+| .-...+++++..+|-+....-...+|...|+++
T Consensus 406 ir~rV~~Ar~~q~~R~~~~Na~l~~~~l~~~~~l~~~~~~~L~~a~~~~~lS~R~~~riLr 466 (506)
T PRK09862 406 VKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLK 466 (506)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9999999999999855165657998999765499978999999999965957999999999
No 117
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.06 E-value=3.2e-09 Score=85.45 Aligned_cols=198 Identities=21% Similarity=0.261 Sum_probs=126.6
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC-EEEECCCCCHHHHHHHHHHHHHHCCC----CCH----------HHHE
Q ss_conf 87754861122217899999999862267787-48966764116689999999985489----883----------4520
Q gi|254780163|r 196 EKVKKGKVDILVGRHEEINRTIQILCRRSKNN-PLYVGDPGVGKTAIAEGFAKQIVDGM----VPD----------ILLG 260 (798)
Q Consensus 196 e~AreGKLDPVIGRd~EI~riiqIL~RR~KNn-~~lvG~~gvGktaive~la~~i~~~~----vp~----------~l~~ 260 (798)
.+-|-..++-|||-+.-++-+..-|..-+=.. -++.|.-|||||+++.-||..+.-.+ -|- .-..
T Consensus 8 rk~RP~~F~e~vGQ~~v~~~L~nal~~~rl~haylf~G~rGvGKTt~Ari~Ak~lNC~~~~~~~pCg~C~~C~~i~~g~~ 87 (704)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRY 87 (704)
T ss_pred HHHCCCCHHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCC
T ss_conf 65188747564186999999999998199752375027898788899999999967999999997877776787855899
Q ss_pred EEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCC---CCC-EEEEECCHHHHHCCCCCCCCCCCHHH-HHHHHHC--CCC
Q ss_conf 1445540467530634312378999999987203---898-39997361663015544434477788-8876630--266
Q gi|254780163|r 261 ARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIES---YAN-AILYIDEIHTLVGAGSASGISVDASN-LLKPALS--SGA 333 (798)
Q Consensus 261 ~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~---~~~-~ilfideih~ligag~~~g~~~d~an-~lkP~L~--rg~ 333 (798)
.-++++|.++ .+|- +.++.+++.+.- .+. -|..|||+|+|- -.+-| +|| -|. -.-
T Consensus 88 ~D~~EiDaAs------~~~v--dd~R~l~~~~~y~P~~~~yKVyiiDEvhmLs---------~~afNAlLK-tLEEPP~~ 149 (704)
T PRK08691 88 VDLLEIDAAS------NTGI--DNIREVLENAQYAPTAGKYKVYIIDEVHMLS---------KSAFNAMLK-TLEEPPEH 149 (704)
T ss_pred CCEEEEECCC------CCCH--HHHHHHHHHCCCCCCCCCEEEEEEECHHHCC---------HHHHHHHHH-HHCCCCCC
T ss_conf 8747742454------4588--9999999853468867853599983154438---------999999998-61479756
Q ss_pred EEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCH
Q ss_conf 03887304899999852011143200144306878689999998612766541035121117899999865420155564
Q gi|254780163|r 334 VRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLP 413 (798)
Q Consensus 334 ~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lP 413 (798)
+.+|-|||.-+ |. ...-|.| -|....+--+.++-..-|..+-. .-++.|.++||....+.+.--+.|
T Consensus 150 v~FilaTTdp~--Kl--p~TIlSR-C~~f~l~~~~~~~i~~~L~~i~~----~E~i~~e~~al~~ia~~a~Gs~RD---- 216 (704)
T PRK08691 150 VKFILATTDPH--KV--PVTVLSR-CLQFVLRNMTAQQVADHLAHVLD----SEKIAYEPPALQLLGRAAAGSMRD---- 216 (704)
T ss_pred EEEEEECCCHH--HC--CHHHHHH-HHHHCCCCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHCCCCHHH----
T ss_conf 08998548846--47--5899988-87710268999999999999999----839856899999999975785777----
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 6798899865333
Q gi|254780163|r 414 DKAIDVIDEAGAS 426 (798)
Q Consensus 414 dkAidllDea~a~ 426 (798)
|+.|||.|-|.
T Consensus 217 --alslldQaia~ 227 (704)
T PRK08691 217 --ALSLLDQAIAL 227 (704)
T ss_pred --HHHHHHHHHHH
T ss_conf --98899999996
No 118
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=99.06 E-value=3.4e-09 Score=85.23 Aligned_cols=116 Identities=31% Similarity=0.418 Sum_probs=58.2
Q ss_pred HHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEE-------EHHHHHCCCCCC
Q ss_conf 6534589999999998775204456578740688614320038899999873047733772-------068861246530
Q gi|254780163|r 478 VVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRF-------DMSEYMERHAVS 550 (798)
Q Consensus 478 ~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~-------dmsey~e~~~vs 550 (798)
.||||++.|.++.+||...|. --+|||.||-|||||-.||.||..+.=.-... .|-|....-++.
T Consensus 15 d~~GQ~~iv~tL~NAi~~~ri--------~HAYLF~GpRGtGKTS~ARIfAKaLNC~~~~~~PCn~C~~C~~i~~g~~~D 86 (363)
T TIGR02397 15 DVIGQEHIVKTLKNAIKNGRI--------AHAYLFSGPRGTGKTSIARIFAKALNCQGPDGEPCNECESCKEINSGSSLD 86 (363)
T ss_pred CCCCCHHHHHHHHHHHHHCCC--------CCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCC
T ss_conf 023517999999999971896--------623450285997635589999998658878778777750227765289866
Q ss_pred --HHCCCCCHHCCCCCCCCCCHHHHHCC----CEEEEECCHHHCCHHHHHHHHHHHHHH
Q ss_conf --11047800025644431003555158----517774044550289999999987775
Q gi|254780163|r 551 --RLIGAPPGYVGFGQGGILADSVDQNP----YSVVLLDEIEKSHPDVLNILLQIMDYG 603 (798)
Q Consensus 551 --~LiGappGYvG~~egg~Lte~vr~~P----~sVvl~DEiEKAh~~v~~~llqild~G 603 (798)
-+=|| ..=|=|+==.|.|.|.-.| |=|-..||++==.+.=||.||.-|+|=
T Consensus 87 viEiDAA--SN~gVD~IR~l~e~v~y~P~~~kYKvYIIDEVHMLS~~AFNALLKTLEEP 143 (363)
T TIGR02397 87 VIEIDAA--SNNGVDDIRELRENVKYAPSKGKYKVYIIDEVHMLSKSAFNALLKTLEEP 143 (363)
T ss_pred EEEECCC--CCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 6886486--56878899999873036875544335887323028656899987652279
No 119
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.05 E-value=1.1e-09 Score=88.73 Aligned_cols=197 Identities=19% Similarity=0.217 Sum_probs=124.6
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHCCCCC-CEEEECCCCCHHHHHHHHHHHHHHCCCCC--HH---------H---HEE
Q ss_conf 775486112221789999999986226778-74896676411668999999998548988--34---------5---201
Q gi|254780163|r 197 KVKKGKVDILVGRHEEINRTIQILCRRSKN-NPLYVGDPGVGKTAIAEGFAKQIVDGMVP--DI---------L---LGA 261 (798)
Q Consensus 197 ~AreGKLDPVIGRd~EI~riiqIL~RR~KN-n~~lvG~~gvGktaive~la~~i~~~~vp--~~---------l---~~~ 261 (798)
+-|-..++-|||-+.-++-+...|.--+=. --++.|..|||||+++.-||..+.-.+-+ .. + ...
T Consensus 9 k~Rp~~f~~~vGQ~~v~~~l~na~~~~r~~haylf~G~rG~GKtt~ari~ak~lnc~~~~~~~pcg~c~~c~~i~~g~~~ 88 (643)
T PRK07994 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFV 88 (643)
T ss_pred HHCCCCHHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf 52888666653879999999999982986634874589988888999999999679999999978767768988658988
Q ss_pred EEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCC---CCC-EEEEECCHHHHHCCCCCCCCCCCHHH-HHHHHHCC-CCEE
Q ss_conf 445540467530634312378999999987203---898-39997361663015544434477788-88766302-6603
Q gi|254780163|r 262 RIFSLDMGNLIAGTRYRGDFEERIKKIVKEIES---YAN-AILYIDEIHTLVGAGSASGISVDASN-LLKPALSS-GAVR 335 (798)
Q Consensus 262 ~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~---~~~-~ilfideih~ligag~~~g~~~d~an-~lkP~L~r-g~~~ 335 (798)
-++++|. ++-+|- +-++.+++.+.- .+. -|..|||+|+|- -.+-| +||..=.- -.+.
T Consensus 89 d~~eida------as~~~v--d~~rel~~~~~y~p~~~r~kvyiidEvhmls---------~~afnalLKtlEePp~hv~ 151 (643)
T PRK07994 89 DLIEIDA------ASRTKV--EDTRDLLDNVQYAPARGRFKVYLIDEVHMLS---------RHSFNALLKTLEEPPAHVK 151 (643)
T ss_pred CEEEEEC------CCCCCH--HHHHHHHHHCCCCCCCCCEEEEEEECHHHCC---------HHHHHHHHHHHCCCCHHCE
T ss_conf 7588636------777888--9999999844668877853699972210158---------9999999986237861008
Q ss_pred EEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 88730489999985201114320014430687868999999861276654103512111789999986542015556467
Q gi|254780163|r 336 CIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDK 415 (798)
Q Consensus 336 ~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdk 415 (798)
+|-|||.- +|. ...-|.| -|....+.-+.++-..-|..+-. .-++.|.++||....+.+.--+.|
T Consensus 152 filaTT~~--~k~--p~TilSR-C~~f~~~~~~~~~i~~~l~~i~~----~e~i~~~~~al~~ia~~a~gs~rd------ 216 (643)
T PRK07994 152 FLLATTDP--QKL--PVTILSR-CLQFHLKALDVEQIRHQLEHILN----EEHIAHEPRALQLLARAADGSLRD------ 216 (643)
T ss_pred EEEECCCH--HHC--CHHHHHH-HHHEECCCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHCCCCHHH------
T ss_conf 99860774--548--4789977-76500166999999999999999----759987889999999974786566------
Q ss_pred HHHHHHHHHH
Q ss_conf 9889986533
Q gi|254780163|r 416 AIDVIDEAGA 425 (798)
Q Consensus 416 AidllDea~a 425 (798)
|..|+|.|-|
T Consensus 217 alsl~dq~i~ 226 (643)
T PRK07994 217 ALSLTDQAIA 226 (643)
T ss_pred HHHHHHHHHH
T ss_conf 8889999998
No 120
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.05 E-value=3.8e-09 Score=84.90 Aligned_cols=197 Identities=21% Similarity=0.260 Sum_probs=127.2
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE-ECCCCCHHHHHHHHHHHHHHCCCC----CHH--------H--HEE
Q ss_conf 7754861122217899999999862267787489-667641166899999999854898----834--------5--201
Q gi|254780163|r 197 KVKKGKVDILVGRHEEINRTIQILCRRSKNNPLY-VGDPGVGKTAIAEGFAKQIVDGMV----PDI--------L--LGA 261 (798)
Q Consensus 197 ~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~l-vG~~gvGktaive~la~~i~~~~v----p~~--------l--~~~ 261 (798)
+-|-..++-|||-+--++-+...|..-+=.+..| .|.-|||||++..-||.-+...+- |-. - +..
T Consensus 9 k~RP~~f~e~vGQ~~v~~~l~nal~~~rl~haylf~G~rGvGKTt~aRi~Ak~lnC~~~~~~~pcg~C~~C~~i~~g~~~ 88 (816)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFV 88 (816)
T ss_pred HHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf 50898576623849999999999970986314751178988888999999998678999998978775557877558877
Q ss_pred EEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCC---CCC-EEEEECCHHHHHCCCCCCCCCCCHHH-HHHHHHC--CCCE
Q ss_conf 445540467530634312378999999987203---898-39997361663015544434477788-8876630--2660
Q gi|254780163|r 262 RIFSLDMGNLIAGTRYRGDFEERIKKIVKEIES---YAN-AILYIDEIHTLVGAGSASGISVDASN-LLKPALS--SGAV 334 (798)
Q Consensus 262 ~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~---~~~-~ilfideih~ligag~~~g~~~d~an-~lkP~L~--rg~~ 334 (798)
-++++|.++ .+|- +.++.+++.+.- .+. -|..|||+|+|- -.+=| +|| -|. -.-+
T Consensus 89 d~iEiDaAS------~~~v--d~~r~l~~~~~y~p~~~r~KvyiiDEvHmls---------~~afnalLK-tlEepP~hv 150 (816)
T PRK07003 89 DYVEMDAAS------NRGV--DEMAALLERAVYAPVDARFKVYMIDEVHMLT---------NHAFNAMLK-TLEEPPPHV 150 (816)
T ss_pred CEEEEECCC------CCCH--HHHHHHHHHCCCCCCCCCEEEEEEECHHHCC---------HHHHHHHHH-HHCCCCCCE
T ss_conf 547863554------3576--8999999862247866744799984154339---------999999998-403798664
Q ss_pred EEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 38873048999998520111432001443068786899999986127665410351211178999998654201555646
Q gi|254780163|r 335 RCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPD 414 (798)
Q Consensus 335 ~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPd 414 (798)
.+|-|||.- +|. ...-|.| -+....+--+.++-..-|..+-. .-+|.|.++||....+.+.--+.|
T Consensus 151 ~FilaTTd~--~k~--p~tilSR-c~~f~l~~~~~~~i~~~l~~i~~----~E~i~~e~~al~lia~~a~GsmRD----- 216 (816)
T PRK07003 151 KFILATTDP--QKI--PVTVLSR-CLQFNLKQMPAGHIVSHLERILG----EERIAFEPQALRLLARAAQGSMRD----- 216 (816)
T ss_pred EEEEECCCH--HHC--CHHHHHH-HHHCCCCCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHCCCCHHH-----
T ss_conf 899955880--115--2889877-76522367999999999999999----829977999999999976773788-----
Q ss_pred HHHHHHHHHHHH
Q ss_conf 798899865333
Q gi|254780163|r 415 KAIDVIDEAGAS 426 (798)
Q Consensus 415 kAidllDea~a~ 426 (798)
|+.|+|.|-|.
T Consensus 217 -alsl~dQaia~ 227 (816)
T PRK07003 217 -ALSLTDQAIAY 227 (816)
T ss_pred -HHHHHHHHHHH
T ss_conf -88599999984
No 121
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.04 E-value=8.3e-08 Score=75.28 Aligned_cols=227 Identities=22% Similarity=0.253 Sum_probs=132.8
Q ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCC-CE---EEEE--------HHHH-
Q ss_conf 665345899999999987752044565787406886143200388999998730477-33---7720--------6886-
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGV-QL---LRFD--------MSEY- 543 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~-~l---ir~d--------msey- 543 (798)
.-|+||+++..++.-+.. +|+ +|-.|+.||.|+|||-++++||.-+.. .. ..|+ |+..
T Consensus 12 ~aIvGQe~~k~aLll~av-------~p~--iGgVLi~G~~GtgKStlvRala~lLP~i~~v~~~~f~~~p~~p~~~~~~~ 82 (347)
T CHL00081 12 TAIVGQEEMKLALLLNVI-------DPK--IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKNDPFNSDPRDPDLMSDEV 82 (347)
T ss_pred HHHCCHHHHHHHHHHHHC-------CCC--CCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCHHH
T ss_conf 065384999999999825-------788--78699878998749999999998578742206887678989810024266
Q ss_pred ------HCC--------------C--CCCHHCCCCCHH----CC--CCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHH
Q ss_conf ------124--------------6--530110478000----25--6444310035551585177740445502899999
Q gi|254780163|r 544 ------MER--------------H--AVSRLIGAPPGY----VG--FGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNI 595 (798)
Q Consensus 544 ------~e~--------------~--~vs~LiGappGY----vG--~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~ 595 (798)
.+. . +-.|++|+=--. -| .=+.|.|.++=| .|++.|||.-+.+.+.++
T Consensus 83 ~~~~~~~~~~~~~~~~~p~v~lPlgaTEDrv~GslDie~al~~G~~~f~pGlLa~A~r----GiLyvDEINll~d~~v~~ 158 (347)
T CHL00081 83 RERIRNGEKIPTKKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANR----GILYVDEVNLLDDHLVDI 158 (347)
T ss_pred HHHHCCCCCCCCEECCCCEEECCCCCCCCEECCCHHHHHHHHCCCCCCCCCHHHHCCC----CEEEEEHHHHHHHHHHHH
T ss_conf 6543146667521146862536888852301140009989845871156531222038----858861454323799999
Q ss_pred HHHHHHHHHCC-CCCCCEECCC-CEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECC-CC
Q ss_conf 99987775021-7799776125-429999424214553303689882111488999998728878817768289628-89
Q gi|254780163|r 596 LLQIMDYGILT-DQSGKKISFR-NVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFF-PL 672 (798)
Q Consensus 596 llqild~G~lt-d~~Gr~vdf~-n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~-~l 672 (798)
||+++.+|..| ...|..+..- +.++|-|.|= +. ...+|.++.|+.-.+... +.
T Consensus 159 LLda~a~G~~~VEReG~S~~~Pa~F~liaT~NP--------------eE----------geLrp~llDRF~l~v~v~~~~ 214 (347)
T CHL00081 159 LLDSAASGWNTVEREGISIRHPARFVLIGSGNP--------------EE----------GELRPQLLDRFGMHAEIRTVK 214 (347)
T ss_pred HHHHHHCCEEEECCCCEEECCCCCEEEEECCCC--------------CC----------CCCCHHHHHHEEEEEECCCCC
T ss_conf 999985580898046423305750068855786--------------55----------674888882632267458878
Q ss_pred CHHHHHHHHHHHHH-----------------HHHHHH---HHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999999999-----------------999999---8669889998899999997189810153267999998623
Q gi|254780163|r 673 SSDIIRQVVHKFIM-----------------KLELQL---QEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVK 732 (798)
Q Consensus 673 ~~~~~~~i~~~~l~-----------------~l~~~l---~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~ 732 (798)
+.++-.+|++..+. .+..++ ++.==.+.++++.+.|+++.+- .+|.-+.|--| -.+.
T Consensus 215 ~~e~R~eiv~~r~~f~~~p~~f~~~~~~~~~~l~~~I~~Ar~~L~~V~v~~~~~~~i~~~~~--~~~v~g~RA~I-~l~r 291 (347)
T CHL00081 215 DPELRVKIVEQRSNFDKNPENFREKYSESQDALKTQIILARQLLPNVEIDYDLRVKISQICS--ELDVDGLRGDI-VTNR 291 (347)
T ss_pred CHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH--HHCCCCCCHHH-HHHH
T ss_conf 98999999999997651969999998878999999999998644773559999999999999--84899871899-9999
Q ss_pred HHHHHHHHCCC
Q ss_conf 59999996296
Q gi|254780163|r 733 VPLADEILFGK 743 (798)
Q Consensus 733 ~~la~~il~~~ 743 (798)
..-|-.-|.|+
T Consensus 292 aARA~AAL~GR 302 (347)
T CHL00081 292 AAKALAAFNGR 302 (347)
T ss_pred HHHHHHHHCCC
T ss_conf 99999998699
No 122
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.04 E-value=2.4e-08 Score=79.13 Aligned_cols=214 Identities=21% Similarity=0.319 Sum_probs=162.5
Q ss_pred HHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC---CCCEEEEEHHHHHCCCCCCHHCC
Q ss_conf 653458999999999877520445657874068861432003889999987304---77337720688612465301104
Q gi|254780163|r 478 VVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL---GVQLLRFDMSEYMERHAVSRLIG 554 (798)
Q Consensus 478 ~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~---~~~lir~dmsey~e~~~vs~LiG 554 (798)
.+|||..|+..+.+.|... ...+- +.|..|-|||||--.||++-+.+ +++||.+||.-.-|.-.=|-|.|
T Consensus 224 ~iIG~S~am~~ll~~i~~V----A~Sd~---tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFG 296 (550)
T COG3604 224 GIIGRSPAMRQLLKEIEVV----AKSDS---TVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFG 296 (550)
T ss_pred CCCCCCHHHHHHHHHHHHH----HCCCC---EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHC
T ss_conf 6230699999999999987----26898---0798458885389999999873755579866631222537888888745
Q ss_pred CCCHHCCCCCCCCCCHHHHHCCC-------EEEEECCHHHCCHHHHHHHHHHHHHHHCC---CCCCCEECCCCEEEEEEC
Q ss_conf 78000256444310035551585-------17774044550289999999987775021---779977612542999942
Q gi|254780163|r 555 APPGYVGFGQGGILADSVDQNPY-------SVVLLDEIEKSHPDVLNILLQIMDYGILT---DQSGKKISFRNVILIMTT 624 (798)
Q Consensus 555 appGYvG~~egg~Lte~vr~~P~-------sVvl~DEiEKAh~~v~~~llqild~G~lt---d~~Gr~vdf~n~iii~Ts 624 (798)
|+. |-.|-|++.++- +-+++|||---.+.++--||-+|.+|.+. +++-.+|| +=||..+
T Consensus 297 -------HeK-GAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVD---VRiIAAT 365 (550)
T COG3604 297 -------HEK-GAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVD---VRVIAAT 365 (550)
T ss_pred -------CCC-CCCCCCHHCCCCCEEECCCCEEECHHHCCCCHHHHHHHHHHHHHCCEEECCCCCEEEEE---EEEEECC
T ss_conf -------332-23335101467635655797576022036787788999999863652534799636777---8998213
Q ss_pred CCCHHHHHHCCCCCCCCCCHHHHHHHH-HHHCCHHHHCCCCEEEEC-CCC--CHHHHHHHHHHHHHHHHHHHHHCCC-EE
Q ss_conf 421455330368988211148899999-872887881776828962-889--9999999999999999999986698-89
Q gi|254780163|r 625 NAGALEMSKARIGFGSSRNDDADKEAL-RNFLSPEFLNRLDSIIPF-FPL--SSDIIRQVVHKFIMKLELQLQEKGI-SF 699 (798)
Q Consensus 625 N~G~~~~~~~~~g~~~~~~~~~~~~~l-~~~f~peflnRid~ii~F-~~l--~~~~~~~i~~~~l~~l~~~l~~~~i-~l 699 (798)
|- +..+++ ...||-.+.-||+.+=.+ -|| -++++--.+.-++.+...++ |. .+
T Consensus 366 NR-------------------DL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~---gr~~l 423 (550)
T COG3604 366 NR-------------------DLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRL---GRAIL 423 (550)
T ss_pred CH-------------------HHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC---CCCCC
T ss_conf 53-------------------099998749515545321020013789834588667999999999998863---97640
Q ss_pred EECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9988999999971898101532679999986235
Q gi|254780163|r 700 HFSEEVINWLVSHGYDVKMGARPLERIIKEHVKV 733 (798)
Q Consensus 700 ~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~ 733 (798)
.++++|.+.|.+..|-- --|.|..+|++.+.-
T Consensus 424 ~ls~~Al~~L~~y~wPG--NVRELen~veRavll 455 (550)
T COG3604 424 SLSAEALELLSSYEWPG--NVRELENVVERAVLL 455 (550)
T ss_pred CCCHHHHHHHHCCCCCC--CHHHHHHHHHHHHHH
T ss_conf 33989999997399997--199999899999997
No 123
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.04 E-value=4.8e-08 Score=76.99 Aligned_cols=36 Identities=11% Similarity=0.352 Sum_probs=15.8
Q ss_pred HEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 20144554046753063431237899999998720389839997
Q gi|254780163|r 259 LGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYI 302 (798)
Q Consensus 259 ~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfi 302 (798)
..++||-+|=.-|++. +-+.++++.++..+.-+.||
T Consensus 118 ~~~Kv~IiDEvhmls~--------~a~nallKtlEePp~~~~Fi 153 (541)
T PRK05563 118 GKYKVYIMDEVHMLSQ--------GAVNAFLKTLEEPPSNVIFI 153 (541)
T ss_pred CCEEEEEEECCCCCCH--------HHHHHHHHHHHCCCCCCEEE
T ss_conf 8705999977233899--------99999999985487775699
No 124
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.4e-06 Score=63.67 Aligned_cols=62 Identities=19% Similarity=0.169 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 6989999999999999980998125999878787377429999999849998999999983000
Q gi|254780163|r 82 PTSSFQRVVQRAVLHVQSTGRGIVTGANILVALFSEPDSHATYFLQEQEMTLYDAVNFISHGIS 145 (798)
Q Consensus 82 ~S~~l~rVL~~A~~~A~~~G~~~I~~eHLLLALL~e~ds~a~~iL~~~gis~~~v~~~i~~~~~ 145 (798)
+|..++++|..|...|...++++|+++|+|++|+..+++. .++...|++...+...+...+.
T Consensus 2 ~~~~~~~~l~~a~~~a~~~~h~~~~~eHll~~ll~~~~~~--~~l~~~~~~~~~l~~~~~~~~~ 63 (786)
T COG0542 2 LTERAQKALELAQELARMRRHEYVTPEHLLLALLDQPKGD--ELLNLCGIDLDKLRQELEEFID 63 (786)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHH--HHHHHCCCCHHHHHHHHHHHHH
T ss_conf 4889999999999999985798665999999997486317--9998749999999999999984
No 125
>KOG0731 consensus
Probab=99.02 E-value=2.5e-08 Score=78.95 Aligned_cols=158 Identities=26% Similarity=0.388 Sum_probs=104.4
Q ss_pred CHHHHHHHH---HHHHHHHHHH---------CCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHH
Q ss_conf 112221789---9999999862---------2677874896676411668999999998548988345201445540467
Q gi|254780163|r 203 VDILVGRHE---EINRTIQILC---------RRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGN 270 (798)
Q Consensus 203 LDPVIGRd~---EI~riiqIL~---------RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~ 270 (798)
++-|-|-|+ ||+.++..|- =|-=--++|+|+||+|||-++-..|- + .+.-+++.+..-
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAG---E-------AgVPF~svSGSE 379 (774)
T KOG0731 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAG---E-------AGVPFFSVSGSE 379 (774)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHC---C-------CCCCEEEECHHH
T ss_conf 010267089999999999984398999874776767517878999867899998853---0-------589646413378
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCC---CCCCCCCHH---HHHHHHH----CCCCEEEEEEC
Q ss_conf 5306343123789999999872038983999736166301554---443447778---8887663----02660388730
Q gi|254780163|r 271 LIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGS---ASGISVDAS---NLLKPAL----SSGAVRCIGST 340 (798)
Q Consensus 271 l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~---~~g~~~d~a---n~lkP~L----~rg~~~~Igat 340 (798)
++..-.-.| -.|++.+...++.+.+.|+|||||..+=+.-. ..|+.-+.. |-|-+-| ..+.+-++++|
T Consensus 380 FvE~~~g~~--asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~t 457 (774)
T KOG0731 380 FVEMFVGVG--ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAAT 457 (774)
T ss_pred HHHHHCCCC--HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC
T ss_conf 888760343--488899998743269807971454200312556666788807888999887875277677847998116
Q ss_pred CHHHHHHHHHCCHHHHH--HCEE-EEECCCCHHHHHHHHH
Q ss_conf 48999998520111432--0014-4306878689999998
Q gi|254780163|r 341 TYSEYRQFFEKDKALVR--RFQK-IDVSEPSIEDAIEIVK 377 (798)
Q Consensus 341 T~~ey~~~~e~d~al~r--rF~~-i~v~ep~~~~~~~iL~ 377 (798)
--- =.-|+||-| ||.. |.|+.|+...-..|+.
T Consensus 458 nr~-----d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~ 492 (774)
T KOG0731 458 NRP-----DILDPALLRPGRFDRQIQIDLPDVKGRASILK 492 (774)
T ss_pred CCC-----CCCCHHHCCCCCCCCCEECCCCCHHHHHHHHH
T ss_conf 886-----64288764987555523246985141689999
No 126
>pfam05621 TniB Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.
Probab=99.02 E-value=2e-08 Score=79.74 Aligned_cols=220 Identities=19% Similarity=0.213 Sum_probs=130.2
Q ss_pred HHHHHHHHHCCC---CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEH------H----HHHC--CCCC
Q ss_conf 999999862267---78748966764116689999999985489883452014455404------6----7530--6343
Q gi|254780163|r 213 INRTIQILCRRS---KNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDM------G----NLIA--GTRY 277 (798)
Q Consensus 213 I~riiqIL~RR~---KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~------~----~l~a--g~~~ 277 (798)
+.++-+.|.+-+ =-|-+|||++|.|||.|++.++..--...-++. ....|+.+.+ . ++++ |+.|
T Consensus 46 L~~Le~Ll~~P~~~Rmp~lLlvGdsnnGKT~Iv~rF~~~hp~~~d~~~-~~~PVl~vq~P~~p~~~~lY~~IL~~l~aP~ 124 (302)
T pfam05621 46 LNRLEALYAWPNKQRMPNLLLVGPTNNGKSMIVEKFRRAHPAGSDADQ-EHIPVLVVQMPSEPSVIRFYVALLAAMGAPL 124 (302)
T ss_pred HHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCC-CCCEEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 999999984686468875588707988789999999996799878666-7021899976999886899999999837877
Q ss_pred C--CHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHH
Q ss_conf 1--23789999999872038983999736166301554443447778888766302660388730489999985201114
Q gi|254780163|r 278 R--GDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKAL 355 (798)
Q Consensus 278 r--g~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al 355 (798)
| +.-.+.-..++.-++.-+--+|.|||+|+++ +|+... .-..-|.||=.--.-.|-++|+-|.+-|+ .|..|+-|
T Consensus 125 ~~~~~~~~~~~~~~~ll~~~~vrmLIIDEiHnlL-~Gs~~~-qr~~ln~LK~L~Nel~IpiV~vGt~eA~~-ai~tD~Ql 201 (302)
T pfam05621 125 RPRPRLPEMEQLALALLRKVGVRMLVIDELHNVL-AGNSVN-RREFLNLLRFLGNELRIPLVGVGTRDAYL-AIRSDDQL 201 (302)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHC-CCCHHH-HHHHHHHHHHHHHCCCCCEEEECCHHHHH-HHHCCHHH
T ss_conf 8887789999999999997498789985436560-486889-99999999998636587869953199999-97068888
Q ss_pred HHHCEEEEECCCCHHHHHHHH-HHHHHHHHHHCCCEECCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 320014430687868999999-86127665410351211178-9999986542015556467988998653333211443
Q gi|254780163|r 356 VRRFQKIDVSEPSIEDAIEIV-KGIKPYFEEHHQLRYSKEAI-RAAVQLSVRHFTSRKLPDKAIDVIDEAGASQILQPLS 433 (798)
Q Consensus 356 ~rrF~~i~v~ep~~~~~~~iL-~~~~~~ye~~h~v~~~~~al-~~av~ls~ryi~~r~lPdkAidllDea~a~~~~~~~~ 433 (798)
++||+++.++.=..++.+..| ..+...+--...-.+.+..+ .....+|.=+ .+.-..||-+| |...+.
T Consensus 202 asRF~~~~Lp~W~~d~ef~~LL~sfe~~LPL~~~S~L~~~~~a~~I~~~SeG~------iGei~~Ll~~a-A~~AI~--- 271 (302)
T pfam05621 202 ENRFEPMLLPPWEANDDCCSLLASFAASLPLRRPSPIATLDMARYLLTRSEGT------IGELAHLLMAA-AIAAVE--- 271 (302)
T ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC------HHHHHHHHHHH-HHHHHH---
T ss_conf 85058611688889808999999999868887776888899999999985992------87999999999-999984---
Q ss_pred HHHCCCCHHHHHH
Q ss_conf 2211365789998
Q gi|254780163|r 434 KRRKFITEKDIKK 446 (798)
Q Consensus 434 ~~~~~~~~~~i~~ 446 (798)
..+..|+.+.+.+
T Consensus 272 sG~E~It~~~l~~ 284 (302)
T pfam05621 272 SGEEAINHRTLSM 284 (302)
T ss_pred CCCCCCCHHHHHH
T ss_conf 7871008999966
No 127
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=99.02 E-value=2.5e-09 Score=86.22 Aligned_cols=210 Identities=27% Similarity=0.408 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHCCCCC-------------CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCC
Q ss_conf 1789999999986226778-------------748966764116689999999985489883452014455404675306
Q gi|254780163|r 208 GRHEEINRTIQILCRRSKN-------------NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAG 274 (798)
Q Consensus 208 GRd~EI~riiqIL~RR~KN-------------n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag 274 (798)
|=++.|+.+-+...=-=|+ -++|-|+||.|||=++-.+|... +.+++.+=.+-||
T Consensus 126 GL~~Q~~E~~E~v~LPlk~PeLF~~vGI~PPKGvLLyGPPGtGKTLlAKAvA~et----------~ATFIrvVgSElV-- 193 (364)
T TIGR01242 126 GLEKQIREIREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRVVGSELV-- 193 (364)
T ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCC----------CCEEEEEEHHHHH--
T ss_conf 8789999998887346888316776288989865700757976889999863145----------5126886044444--
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCC-CCCCCC--HH----HH---HHHHHCCCCEEEEEECCHHH
Q ss_conf 3431237899999998720389839997361663015544-434477--78----88---87663026603887304899
Q gi|254780163|r 275 TRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSA-SGISVD--AS----NL---LKPALSSGAVRCIGSTTYSE 344 (798)
Q Consensus 275 ~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~-~g~~~d--~a----n~---lkP~L~rg~~~~IgatT~~e 344 (798)
.||-||=-.-++.|+.-++...+.|+|||||-.| +|-.. +.++.| +- .+ |--.=+||++++||||---.
T Consensus 194 ~KyIGEGArLV~~~F~LAkEKaPsIiFIDEiDAi-aakR~~~~TsGdREV~RTlmQLLAElDGFd~rg~VkviaATNR~D 272 (364)
T TIGR01242 194 RKYIGEGARLVREVFELAKEKAPSIIFIDEIDAI-AAKRVDSSTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPD 272 (364)
T ss_pred HHHHCCHHHHHHHHHHHHHCCCCCEEEEECHHHH-HHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCH
T ss_conf 4441331689999999853069816861013335-432114677873157889999997524888767616887207620
Q ss_pred HHHHHHCCHHHHH--HCEE-EEECCCCHHHHHHHHHHHHHHHHHHCCCEECC-HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 9998520111432--0014-43068786899999986127665410351211-178999998654201555646798899
Q gi|254780163|r 345 YRQFFEKDKALVR--RFQK-IDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSK-EAIRAAVQLSVRHFTSRKLPDKAIDVI 420 (798)
Q Consensus 345 y~~~~e~d~al~r--rF~~-i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~-~al~~av~ls~ryi~~r~lPdkAidll 420 (798)
==|||+-| ||.+ |.|+-|+.+--++||+--.. +..... =-++..+++..=. ++--| |||-.
T Consensus 273 -----ilDPA~LRPGRFDR~IEVPlP~~~GR~eIlkiHTr------~~~la~dVdl~~~A~~TeG~-sGAdl--KAi~t- 337 (364)
T TIGR01242 273 -----ILDPAILRPGRFDRIIEVPLPDFEGRLEILKIHTR------KMKLAEDVDLEAIAKLTEGA-SGADL--KAICT- 337 (364)
T ss_pred -----HCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHC------CCCCCCCCCHHHHHHHHCCC-CCCHH--HHHHH-
T ss_conf -----20432148886132573169783220566555210------00012356879999874788-66304--23434-
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 865333321144322113657899986631
Q gi|254780163|r 421 DEAGASQILQPLSKRRKFITEKDIKKTIAS 450 (798)
Q Consensus 421 Dea~a~~~~~~~~~~~~~~~~~~i~~~~~~ 450 (798)
|| -+.+....+..||..|....|.+
T Consensus 338 -EA----G~~AIR~~r~~vT~~Df~kAv~K 362 (364)
T TIGR01242 338 -EA----GMFAIREERDYVTMDDFLKAVEK 362 (364)
T ss_pred -HH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -62----04777744567669999999873
No 128
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.01 E-value=6.9e-08 Score=75.85 Aligned_cols=223 Identities=17% Similarity=0.204 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCH-HHHEEEEEEEEHHHHHC---CCCCCCH----
Q ss_conf 789999999986226778748966764116689999999985489883-45201445540467530---6343123----
Q gi|254780163|r 209 RHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPD-ILLGARIFSLDMGNLIA---GTRYRGD---- 280 (798)
Q Consensus 209 Rd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~-~l~~~~i~~ld~~~l~a---g~~~rg~---- 280 (798)
.-+|.-..++-..+.++.-.+++||+|+|||.+...|+..+-...+.. .+.+..+=.-++-..++ |..+.+.
T Consensus 27 ~h~~al~~L~~~l~~~~g~~lltGe~GtGKTtllr~l~~~l~~~~~~~~~i~~~~l~~~~ll~~i~~~lg~~~~~~~~~~ 106 (269)
T TIGR03015 27 GHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAA 106 (269)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 69999999999996489659997299898899999999845934548999769999999999999998598988989999
Q ss_pred HHHHHHHHHHHHCCC-CCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHH----HC-CCCEEEEEECCHHHHHHHHHC--C
Q ss_conf 789999999872038-983999736166301554443447778888766----30-266038873048999998520--1
Q gi|254780163|r 281 FEERIKKIVKEIESY-ANAILYIDEIHTLVGAGSASGISVDASNLLKPA----LS-SGAVRCIGSTTYSEYRQFFEK--D 352 (798)
Q Consensus 281 fe~r~~~~~~~~~~~-~~~ilfideih~ligag~~~g~~~d~an~lkP~----L~-rg~~~~IgatT~~ey~~~~e~--d 352 (798)
+-..+...+.+.... ..++|.|||.|++ +.|+-+-|+=. .. ..-+++|-.-.+ |.+..+.. -
T Consensus 107 ~~~~l~~~L~~~~~~g~~~vliIDEAq~L---------~~~~Le~Lr~L~n~e~~~~~ll~iiL~Gqp-eL~~~L~~~~~ 176 (269)
T TIGR03015 107 LLRELEDFLIEQFAAGKRALLVVDEAQNL---------TPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQL 176 (269)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECHHHC---------CHHHHHHHHHHHCCCCCCCCCEEEEEECCH-HHHHHHCCCCH
T ss_conf 99999999999996699469997242219---------999999999997013588870489995786-79998727402
Q ss_pred HHHHHHC-EEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 1143200-144306878689999998612766541035121117899999865420155564679889986533332114
Q gi|254780163|r 353 KALVRRF-QKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEAGASQILQP 431 (798)
Q Consensus 353 ~al~rrF-~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea~a~~~~~~ 431 (798)
+.|..|- ....+...|.++|...++.--..-...+..-++++|+....+.|.=+ |.+-- ..|-..-+..
T Consensus 177 ~~l~qRI~~~~~L~pl~~eet~~YI~~RL~~AG~~~~~~Ft~~A~~~I~~~S~G~------PR~IN----~Lc~~aLl~a 246 (269)
T TIGR03015 177 QQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI------PRLIN----ILCDRLLLSA 246 (269)
T ss_pred HHHHHCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCC------HHHHH----HHHHHHHHHH
T ss_conf 5455507679984799989999999999986699999985999999999986990------08999----9999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHC
Q ss_conf 43221136578999866310
Q gi|254780163|r 432 LSKRRKFITEKDIKKTIASM 451 (798)
Q Consensus 432 ~~~~~~~~~~~~i~~~~~~~ 451 (798)
..+.++.|+.+.|..++..+
T Consensus 247 ~~~~~~~I~~~~v~~~~~el 266 (269)
T TIGR03015 247 FLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred HHHCCCCCCHHHHHHHHHHH
T ss_conf 99488867999999999976
No 129
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.01 E-value=1.2e-08 Score=81.23 Aligned_cols=211 Identities=21% Similarity=0.254 Sum_probs=138.1
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC-EEEECCCCCHHHHHHHHHHHHHHCCC-----CC--HH-----------
Q ss_conf 7754861122217899999999862267787-48966764116689999999985489-----88--34-----------
Q gi|254780163|r 197 KVKKGKVDILVGRHEEINRTIQILCRRSKNN-PLYVGDPGVGKTAIAEGFAKQIVDGM-----VP--DI----------- 257 (798)
Q Consensus 197 ~AreGKLDPVIGRd~EI~riiqIL~RR~KNn-~~lvG~~gvGktaive~la~~i~~~~-----vp--~~----------- 257 (798)
+-|--.++-|||-|.-++-+..-+..-+=.+ -++.|.-|||||+++.-||.-+.-.. -| +.
T Consensus 16 k~rp~~f~~~~gq~~~~~~l~~~~~~~~~~~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c~~c~~c~~i~ 95 (600)
T PRK09111 16 KYRPQTFDDLIGQEAMVRTLRNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPCGVGEHCQAIM 95 (600)
T ss_pred CCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 01798776633859999999999972984204764578987899999999999669887666899889899886589886
Q ss_pred -HHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCC---CC-EEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHC--
Q ss_conf -52014455404675306343123789999999872038---98-399973616630155444344777888876630--
Q gi|254780163|r 258 -LLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESY---AN-AILYIDEIHTLVGAGSASGISVDASNLLKPALS-- 330 (798)
Q Consensus 258 -l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~---~~-~ilfideih~ligag~~~g~~~d~an~lkP~L~-- 330 (798)
=+..-++++|.+ +.+|- +-++.+++.+.-. +. -|.-|||+|+| |-.|-|-|.--|.
T Consensus 96 ~~~~~d~~e~daa------s~~~v--~~~r~~~~~~~~~p~~~~~kv~iidevhml---------s~~afnallktleep 158 (600)
T PRK09111 96 EGRHVDVIEMDAA------SHTGV--DDIREIIESVRYRPVSARYKVYIIDEVHML---------STAAFNALLKTLEEP 158 (600)
T ss_pred CCCCCCEEEEECC------CCCCH--HHHHHHHHHHCCCCCCCCEEEEEEECCCCC---------CHHHHHHHHHHHHCC
T ss_conf 6899875885155------45788--899999986053887775469996001105---------799999999876259
Q ss_pred CCCEEEEEECCHHHHHHHHHCCH-HHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCC
Q ss_conf 26603887304899999852011-14320014430687868999999861276654103512111789999986542015
Q gi|254780163|r 331 SGAVRCIGSTTYSEYRQFFEKDK-ALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTS 409 (798)
Q Consensus 331 rg~~~~IgatT~~ey~~~~e~d~-al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~ 409 (798)
-.-+.+|=|||. .+| =| ..-.|-|.-...--+.++-..-|..+.. .-++.+.++||...++.|.-=+.|
T Consensus 159 p~~~~fi~att~--~~k----~p~ti~src~~f~~~~~~~~~~~~~l~~i~~----~e~~~~~~~al~~ia~~a~GS~RD 228 (600)
T PRK09111 159 PPHVKFIFATTE--IRK----VPVTVLSRCQRFDLRRIEAEVLAAHLARIAE----KEGVEVEPDALALIARAAEGSVRD 228 (600)
T ss_pred CCCEEEEEECCC--HHH----CCHHHHHHHHEECCCCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHCCCCCCH
T ss_conf 865499996285--343----7589985441201057999999999999998----607686677999999974898421
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 556467988998653333211443221136578999866
Q gi|254780163|r 410 RKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTI 448 (798)
Q Consensus 410 r~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~ 448 (798)
|..|||.|-|. ....|+..+|.+++
T Consensus 229 ------aLSlLDQai~~--------~~~~i~~~~v~~mL 253 (600)
T PRK09111 229 ------GLSLLDQAIAH--------GAGEVTAEQVRDML 253 (600)
T ss_pred ------HHHHHHHHHHC--------CCCCCCHHHHHHHH
T ss_conf ------89999999972--------79875699999986
No 130
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=99.00 E-value=3.2e-10 Score=92.60 Aligned_cols=161 Identities=27% Similarity=0.417 Sum_probs=109.8
Q ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCCCCC--------CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCC
Q ss_conf 66534589999999998775204456578--------7406886143200388999998730477337720688612465
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKIARAGLSDPNK--------PIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHA 548 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~r--------P~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~ 548 (798)
+=|-|+|||.+.|.+-|-- |++|+| |-|++| +||+|+|||.||||.|=.=+.+|.++==|||-|
T Consensus 59 ~DVAG~dEAKeEl~EiVdF----LK~P~kf~~LGaKIPKGVLL-vGPPGTGKTLLAKAvAGEA~VPFF~iSGSdFVE--- 130 (505)
T TIGR01241 59 KDVAGIDEAKEELVEIVDF----LKNPSKFTKLGAKIPKGVLL-VGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE--- 130 (505)
T ss_pred CCCCCCHHHHHHHHHHHHH----CCCCHHHHHCCCCCCCCEEE-ECCCCCCHHHHHHHHHCCCCCCCEEECCCCEEE---
T ss_conf 3444532333433313422----26963798727889871473-178784246788752025889624740761011---
Q ss_pred CCHHCCCCCHHCCCCCCC--CCCHHHHHCCCEEEEECCHHH------------CCHHHHHHHHHHHH--HHHCCCCCCCE
Q ss_conf 301104780002564443--100355515851777404455------------02899999999877--75021779977
Q gi|254780163|r 549 VSRLIGAPPGYVGFGQGG--ILADSVDQNPYSVVLLDEIEK------------SHPDVLNILLQIMD--YGILTDQSGKK 612 (798)
Q Consensus 549 vs~LiGappGYvG~~egg--~Lte~vr~~P~sVvl~DEiEK------------Ah~~v~~~llqild--~G~ltd~~Gr~ 612 (798)
.++| || -.= =|.|.=|++-=|+|+.|||+- +|-+.=+.|=|+|= ||.=+ +.
T Consensus 131 --MFVG-----VG--ASRVRDLFeqAK~nAPCIIFIDEIDAVGr~RGaG~lGGGnDEREQTLNQLLVEMDGF~~-~~--- 197 (505)
T TIGR01241 131 --MFVG-----VG--ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGELGGGNDEREQTLNQLLVEMDGFGT-NT--- 197 (505)
T ss_pred --CCCC-----CC--CEEHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCCCCCCCHHHHHHHHHHEECCCCCC-CC---
T ss_conf --1205-----64--00014457999971897056401000033356436676541355433233133178589-88---
Q ss_pred ECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf 6125429999424214553303689882111488999998728878817768289628899999999999999
Q gi|254780163|r 613 ISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFI 685 (798)
Q Consensus 613 vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l 685 (798)
+.|||--|| | .++.+ ..-.|| +|+|.=|+=+.=+-.--.+|+..++
T Consensus 198 ----gvIv~AATN-------R-----------PDvLD--~ALLRP---GRFDRQv~V~~PD~~GR~~IL~VH~ 243 (505)
T TIGR01241 198 ----GVIVIAATN-------R-----------PDVLD--PALLRP---GRFDRQVVVDLPDIKGREEILKVHA 243 (505)
T ss_pred ----CEEEEEECC-------C-----------CCCCC--CCCCCC---CCCCCEEECCCCCHHHHHHHHHHHH
T ss_conf ----579985048-------8-----------41165--100687---8744513458887467899999985
No 131
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=98.98 E-value=1.5e-07 Score=73.36 Aligned_cols=36 Identities=11% Similarity=0.372 Sum_probs=17.0
Q ss_pred HEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 20144554046753063431237899999998720389839997
Q gi|254780163|r 259 LGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYI 302 (798)
Q Consensus 259 ~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfi 302 (798)
..++||-+|-.-++.. +-..++++-++..+.-++||
T Consensus 117 ~~yKV~IIDEah~Ls~--------~A~NALLKtLEEPP~~~vFI 152 (557)
T PRK07270 117 ATYKVYIIDEVHMLST--------GAFNALLKTLEEPTENVVFI 152 (557)
T ss_pred CCEEEEEECCHHHCCH--------HHHHHHHHHHHCCCCCEEEE
T ss_conf 8838999714453499--------99998999852899876999
No 132
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.98 E-value=9.9e-08 Score=74.72 Aligned_cols=175 Identities=28% Similarity=0.396 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHHHHHHHH---HCCCCC---CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCC
Q ss_conf 112221789999999986---226778---74896676411668999999998548988345201445540467530634
Q gi|254780163|r 203 VDILVGRHEEINRTIQIL---CRRSKN---NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTR 276 (798)
Q Consensus 203 LDPVIGRd~EI~riiqIL---~RR~KN---n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~ 276 (798)
++-.||-++-.++ ++|. ++.++. ..+|.|+||.|||+++.=+|.-+-. |.++-+ ...| .-
T Consensus 25 l~efiGQ~~vk~~-L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv--------n~k~ts--Gp~l-eK-- 90 (332)
T COG2255 25 LDEFIGQEKVKEQ-LQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGV--------NLKITS--GPAL-EK-- 90 (332)
T ss_pred HHHHCCHHHHHHH-HHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC--------CEEECC--CCCC-CC--
T ss_conf 8885183999999-99999999844987674786479987688899999998567--------737636--6201-57--
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCC--------------------CCEEE
Q ss_conf 3123789999999872038983999736166301554443447778888766302--------------------66038
Q gi|254780163|r 277 YRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSS--------------------GAVRC 336 (798)
Q Consensus 277 ~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~r--------------------g~~~~ 336 (798)
-|+ +-+++..++ ++-||||||||-+ +.-+-.+|-|+|.- --+..
T Consensus 91 -~gD----laaiLt~Le--~~DVLFIDEIHrl---------~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 91 -PGD----LAAILTNLE--EGDVLFIDEIHRL---------SPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred -HHH----HHHHHHCCC--CCCEEEEEHHHHC---------CHHHHHHHHHHHHHEEEEEEECCCCCCCEEECCCCCEEE
T ss_conf -265----999986398--6776777255314---------742898964675310577897248755347637998137
Q ss_pred EEECCHHHHHHHHHCCHHHHHHCEE-EEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 8730489999985201114320014-430687868999999861276654103512111789999986542015556467
Q gi|254780163|r 337 IGSTTYSEYRQFFEKDKALVRRFQK-IDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDK 415 (798)
Q Consensus 337 IgatT~~ey~~~~e~d~al~rrF~~-i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdk 415 (798)
|||||-..- = -.-|..||-. .+++--++++--.|+. ++-..-++.+++++.....+-| |--|.=
T Consensus 155 IGATTr~G~----l-t~PLrdRFGi~~rlefY~~~eL~~Iv~----r~a~~l~i~i~~~~a~eIA~rS------RGTPRI 219 (332)
T COG2255 155 IGATTRAGM----L-TNPLRDRFGIIQRLEFYTVEELEEIVK----RSAKILGIEIDEEAALEIARRS------RGTPRI 219 (332)
T ss_pred EEECCCCCC----C-CCHHHHHCCCEEEEECCCHHHHHHHHH----HHHHHHCCCCCHHHHHHHHHHC------CCCCHH
T ss_conf 510134664----5-633688628604540588899999999----8888738776857999999863------699389
Q ss_pred HHHHHHH
Q ss_conf 9889986
Q gi|254780163|r 416 AIDVIDE 422 (798)
Q Consensus 416 AidllDe 422 (798)
|..||..
T Consensus 220 AnRLLrR 226 (332)
T COG2255 220 ANRLLRR 226 (332)
T ss_pred HHHHHHH
T ss_conf 9999999
No 133
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.7e-08 Score=78.82 Aligned_cols=339 Identities=21% Similarity=0.259 Sum_probs=176.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHC------------CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHH
Q ss_conf 611222178999999998622------------67787489667641166899999999854898834520144554046
Q gi|254780163|r 202 KVDILVGRHEEINRTIQILCR------------RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMG 269 (798)
Q Consensus 202 KLDPVIGRd~EI~riiqIL~R------------R~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~ 269 (798)
+++-|.|.|+..+.+.+++.= |-=--++|+|+||.|||-++...|- +-+|| .++.+..
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAg---EA~VP-------Ff~iSGS 217 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAG---EAGVP-------FFSISGS 217 (596)
T ss_pred CHHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHC---CCCCC-------CEECCCH
T ss_conf 7566418679999999999986385566752353456526855999872789999845---46898-------3530344
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCC-CCCCCCCCCH----HHHHHHHH----CCCCEEEEEEC
Q ss_conf 753063431237899999998720389839997361663015-5444344777----88887663----02660388730
Q gi|254780163|r 270 NLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGA-GSASGISVDA----SNLLKPAL----SSGAVRCIGST 340 (798)
Q Consensus 270 ~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~liga-g~~~g~~~d~----an~lkP~L----~rg~~~~Igat 340 (798)
..|- .|.|-=-.|.+.+..+++++.+.|+|||||-.+--. |.+.|++-|- .|-|.--+ ++..+-+|+||
T Consensus 218 ~FVe--mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaT 295 (596)
T COG0465 218 DFVE--MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAAT 295 (596)
T ss_pred HHHH--HHCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf 4644--31478838889999985515996698763433145457788998069999998888520157888754885267
Q ss_pred CHHHHHHHHHCCHHHHH--HC-EEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 48999998520111432--00-1443068786899999986127665410351211178999998654201555646798
Q gi|254780163|r 341 TYSEYRQFFEKDKALVR--RF-QKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAI 417 (798)
Q Consensus 341 T~~ey~~~~e~d~al~r--rF-~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAi 417 (798)
-..+ =-|+||-| || ..|.|+-|+...--.||+-- .+ ++.+.++.=-.. .+|=-|+..- ..=.
T Consensus 296 NRpd-----VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH-~~-----~~~l~~~V~l~~---iAr~tpGfsG-AdL~ 360 (596)
T COG0465 296 NRPD-----VLDPALLRPGRFDRQILVELPDIKGREQILKVH-AK-----NKPLAEDVDLKK---IARGTPGFSG-ADLA 360 (596)
T ss_pred CCCC-----CCHHHHCCCCCCCEEEECCCCCHHHHHHHHHHH-HH-----CCCCCCCCCHHH---HHHHCCCCCC-CHHH
T ss_conf 8743-----331765288776625544785156578887886-41-----577776678889---8643778563-0676
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf 89986533332114432211365789998663102453101110011233421000024665345899999999987752
Q gi|254780163|r 418 DVIDEAGASQILQPLSKRRKFITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIAR 497 (798)
Q Consensus 418 dllDea~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~ 497 (798)
.++.||+ +.+....+..|+..|+.+.+.+..-|-+-....-.+.++ +++--.+|.-+++....
T Consensus 361 nl~NEAa----l~aar~n~~~i~~~~i~ea~drv~~G~erks~vise~ek----------~~~AYhEaghalv~~~l--- 423 (596)
T COG0465 361 NLLNEAA----LLAARRNKKEITMRDIEEAIDRVIAGPERKSRVISEAEK----------KITAYHEAGHALVGLLL--- 423 (596)
T ss_pred HHHHHHH----HHHHHHCCEEEECCCHHHHHHHHHCCCCCCCCCCCHHHC----------CCHHHHHHHHHHHHHHC---
T ss_conf 5566889----999883684675345388999996587768864674540----------32578899999999727---
Q ss_pred CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCE-EEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCC
Q ss_conf 04456578740688614320038899999873047733-77206886124653011047800025644431003555158
Q gi|254780163|r 498 AGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQL-LRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNP 576 (798)
Q Consensus 498 ~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~l-ir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P 576 (798)
+...|+ .-...=|.| .+|.+...-+- .++-||.-.-.+.+.-+.| |...|-+.-.+
T Consensus 424 ----~~~d~v-~KvtIiPrG-------~alG~t~~~Pe~d~~l~sk~~l~~~i~~~lg-----------GRaAEel~~g~ 480 (596)
T COG0465 424 ----PDADPV-HKVTIIPRG-------RALGYTLFLPEEDKYLMSKEELLDRIDVLLG-----------GRAAEELIFGY 480 (596)
T ss_pred ----CCCCCC-CEEEECCCC-------HHHCCEECCCCCCCCCCCHHHHHHHHHHHHC-----------CCHHHHHHHCC
T ss_conf ----887620-035522672-------2201100388545320127788879999866-----------71766646244
Q ss_pred CEEEEE--CCHHHCCHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 517774--044550289999999987775021779977
Q gi|254780163|r 577 YSVVLL--DEIEKSHPDVLNILLQIMDYGILTDQSGKK 612 (798)
Q Consensus 577 ~sVvl~--DEiEKAh~~v~~~llqild~G~ltd~~Gr~ 612 (798)
.+--. +.+ +...++...+..+.-+.+-.|..
T Consensus 481 -e~ttGa~~D~----~~at~~ar~mVt~~Gms~~lG~v 513 (596)
T COG0465 481 -EITTGASNDL----EKATDLARAMVTEYGMSAKLGPV 513 (596)
T ss_pred -CCCCCCHHHH----HHHHHHHHHHHHHCCCCHHHCCE
T ss_conf -5013521318----99999999853351852653651
No 134
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.97 E-value=5.8e-07 Score=69.18 Aligned_cols=128 Identities=23% Similarity=0.376 Sum_probs=81.7
Q ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCC--C---C----EEEEEHHHHHCCC
Q ss_conf 66534589999999998775204456578740688614320038899999873047--7---3----3772068861246
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALG--V---Q----LLRFDMSEYMERH 547 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~--~---~----lir~dmsey~e~~ 547 (798)
..||||++++..+.+++...|. --.|||+||.|||||-+|+.||..+. . . -..-.|-++.+..
T Consensus 17 ~dvVGQ~~vv~~L~nai~~~ri--------~HAyLF~GprGtGKTT~ArilAkaLnC~~~~~~~~pCg~C~~C~~I~~g~ 88 (462)
T PRK06305 17 SEILGQDAVVTVLKNALRFNRA--------AHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAICKEISSGT 88 (462)
T ss_pred HHHCCCHHHHHHHHHHHHCCCC--------CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf 6604909999999999984997--------62343038998599999999999967999988889887668889986389
Q ss_pred CCC--HHCCCCCHHCCCCCCCCCCHHHHHCC----CEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEE
Q ss_conf 530--11047800025644431003555158----517774044550289999999987775021779977612542999
Q gi|254780163|r 548 AVS--RLIGAPPGYVGFGQGGILADSVDQNP----YSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILI 621 (798)
Q Consensus 548 ~vs--~LiGappGYvG~~egg~Lte~vr~~P----~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii 621 (798)
+.. .+=++. .-|-|+=-.|.+.++..| |-|.++||++.-+.+-||.||..|+|=- .++++|
T Consensus 89 ~~DViEiDaAs--~~gVddIRel~e~v~~~P~~~~yKVyIIDEvhmLs~~AfNALLKtLEEPP-----------~~v~FI 155 (462)
T PRK06305 89 SLDVIEIDGAS--HRGIEDIRQINETVLFTPSKSQYKIYIIDEVHMLTKEAFNSLLKTLEEPP-----------QHVKFF 155 (462)
T ss_pred CCCEEEECCCC--CCCHHHHHHHHHHHCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHHCCC-----------CCEEEE
T ss_conf 99868643553--44668999999771008867750599981521179999999999861898-----------774999
Q ss_pred EECC
Q ss_conf 9424
Q gi|254780163|r 622 MTTN 625 (798)
Q Consensus 622 ~TsN 625 (798)
|.++
T Consensus 156 LaTT 159 (462)
T PRK06305 156 LATT 159 (462)
T ss_pred EEEC
T ss_conf 9818
No 135
>KOG0734 consensus
Probab=98.97 E-value=1.3e-08 Score=81.05 Aligned_cols=153 Identities=29% Similarity=0.500 Sum_probs=103.5
Q ss_pred CCCCHHHHHHH---HHHHHHHHHH---------HCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEE
Q ss_conf 48611222178---9999999986---------22677874896676411668999999998548988345201445540
Q gi|254780163|r 200 KGKVDILVGRH---EEINRTIQIL---------CRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLD 267 (798)
Q Consensus 200 eGKLDPVIGRd---~EI~riiqIL---------~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld 267 (798)
+-+++-|-|-| .|++.+++-| ..|--..++|||+||.|||-++...|- +..||- |.
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAG---EA~VPF-------F~-- 367 (752)
T KOG0734 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAG---EAGVPF-------FY-- 367 (752)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHC---CCCCCE-------EE--
T ss_conf 655002147278999999999986090876431475888538768999755699998605---568974-------74--
Q ss_pred HHHHHCCC----CCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHH------HHHHHHH----CCCC
Q ss_conf 46753063----43123789999999872038983999736166301554443447778------8887663----0266
Q gi|254780163|r 268 MGNLIAGT----RYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDAS------NLLKPAL----SSGA 333 (798)
Q Consensus 268 ~~~l~ag~----~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~a------n~lkP~L----~rg~ 333 (798)
.||. .|.|.=-.|++.++.++++..+.|+|||||..+ | +... .-|.+ |-|.--| ..-.
T Consensus 368 ----~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDav-G--~kR~-~~~~~y~kqTlNQLLvEmDGF~qNeG 439 (752)
T KOG0734 368 ----ASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAV-G--GKRN-PSDQHYAKQTLNQLLVEMDGFKQNEG 439 (752)
T ss_pred ----CCCCCHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECHHHH-C--CCCC-CCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf ----16620445422014899999999987349859997200220-5--6678-62778999899999998428676886
Q ss_pred EEEEEECCHHHHHHHHHCCHHHHH--HCEE-EEECCCCHHHHHHHHH
Q ss_conf 038873048999998520111432--0014-4306878689999998
Q gi|254780163|r 334 VRCIGSTTYSEYRQFFEKDKALVR--RFQK-IDVSEPSIEDAIEIVK 377 (798)
Q Consensus 334 ~~~IgatT~~ey~~~~e~d~al~r--rF~~-i~v~ep~~~~~~~iL~ 377 (798)
|-+||||..-| .-|+||.| ||.+ |.|+-|++.--.+||.
T Consensus 440 iIvigATNfpe-----~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~ 481 (752)
T KOG0734 440 IIVIGATNFPE-----ALDKALTRPGRFDRHVTVPLPDVRGRTEILK 481 (752)
T ss_pred EEEEECCCCHH-----HHHHHHCCCCCCCEEEECCCCCCCCHHHHHH
T ss_conf 69995168745-----5568734887553367468977332899999
No 136
>KOG0989 consensus
Probab=98.95 E-value=4.3e-08 Score=77.32 Aligned_cols=187 Identities=24% Similarity=0.374 Sum_probs=83.7
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHH--
Q ss_conf 588775486112221789999999986226778748966764116689999999985489883452014455404675--
Q gi|254780163|r 194 LTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNL-- 271 (798)
Q Consensus 194 LTe~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l-- 271 (798)
.|++-+-..+|-++|-+..+.-+...+.||.-.|-++-|+||.|||+-+..+|..+.- +.+.-.++.+++..-.
T Consensus 26 wteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~----~~~~~~rvl~lnaSderG 101 (346)
T KOG0989 26 WTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC----EQLFPCRVLELNASDERG 101 (346)
T ss_pred HHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCC----CCCCCCCHHHHCCCCCCC
T ss_conf 3787478737765015999999999986068860786689998676899999998557----423555424313660014
Q ss_pred --HCCCCCCCHHHHHHHHHHHHH--CCCCC-EEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHC--CCCEEEEEECCHHH
Q ss_conf --306343123789999999872--03898-399973616630155444344777888876630--26603887304899
Q gi|254780163|r 272 --IAGTRYRGDFEERIKKIVKEI--ESYAN-AILYIDEIHTLVGAGSASGISVDASNLLKPALS--SGAVRCIGSTTYSE 344 (798)
Q Consensus 272 --~ag~~~rg~fe~r~~~~~~~~--~~~~~-~ilfideih~ligag~~~g~~~d~an~lkP~L~--rg~~~~IgatT~~e 344 (798)
+-+.|.. .|+. +....+.. ...+. -|+-+||.|++ +-||-+-|.-.+. ....++|=.|++=+
T Consensus 102 isvvr~Kik-~fak-l~~~~~~~~~~~~~~fKiiIlDEcdsm---------tsdaq~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989 102 ISVVREKIK-NFAK-LTVLLKRSDGYPCPPFKIIILDECDSM---------TSDAQAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCHHHHHC-CHHH-HHHCCCCCCCCCCCCCEEEEEECHHHH---------HHHHHHHHHHHHHCCCCCEEEEEECCCHH
T ss_conf 310066523-7998-750255656788986328997416453---------09999999999862546659999738856
Q ss_pred HHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHH
Q ss_conf 999852011143200144306878689999998612766541035121117899999865
Q gi|254780163|r 345 YRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSV 404 (798)
Q Consensus 345 y~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ 404 (798)
+.|. -+..|-|+..-+....+..+..|+-+.+. -+|.|.++|+...+..|.
T Consensus 171 --rii~---pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~----E~v~~d~~al~~I~~~S~ 221 (346)
T KOG0989 171 --RIIR---PLVSRCQKFRFKKLKDEDIVDRLEKIASK----EGVDIDDDALKLIAKISD 221 (346)
T ss_pred --HCCH---HHHHHHHHHCCCCCCHHHHHHHHHHHHHH----HCCCCCHHHHHHHHHHCC
T ss_conf --4772---87746777128876447899999999888----589978789999999738
No 137
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.95 E-value=2.1e-07 Score=72.33 Aligned_cols=161 Identities=15% Similarity=0.210 Sum_probs=89.5
Q ss_pred HHHHHHCCCCCCEE-EECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99986226778748-96676411668999999998548988345201445540467530634312378999999987203
Q gi|254780163|r 216 TIQILCRRSKNNPL-YVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIES 294 (798)
Q Consensus 216 iiqIL~RR~KNn~~-lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~ 294 (798)
+.++... ..+|++ +.|++|.|||.+.++++..+.+. +++++.++... |......+++.++.
T Consensus 29 l~~~~~~-~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~-------~~~~~yl~~~~----------~~~~~~~~l~~l~~ 90 (226)
T TIGR03420 29 LRQLAAG-KGDRFLYLWGESGSGKSHLLQAACAAAEER-------GKSAIYLPLAE----------LAQADPEVLEGLEQ 90 (226)
T ss_pred HHHHHHC-CCCCEEEEECCCCCCHHHHHHHHHHHHHCC-------CCCEEEECHHH----------HHHHHHHHHHHCCC
T ss_conf 9987646-688869998999998899999999998626-------99579952999----------87753999972744
Q ss_pred CCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHC---EEEEECCCCHHH
Q ss_conf 89839997361663015544434477788887663026603887304899999852011143200---144306878689
Q gi|254780163|r 295 YANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRF---QKIDVSEPSIED 371 (798)
Q Consensus 295 ~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF---~~i~v~ep~~~~ 371 (798)
. -+|+||++|.+.|....+. -.-+++--...+|.-=+|+++++...-+...+| |..|| ..+.+++|+.++
T Consensus 91 -~-d~l~iDDi~~i~~~~~~e~---~lF~l~N~~~~~~~~ilits~~~p~~l~~~l~d--L~SRl~~~~~~~I~~pdd~~ 163 (226)
T TIGR03420 91 -A-DLVCLDDVEAIAGQPEWQE---ALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPD--LRTRLAWGLVFQLPPLSDEE 163 (226)
T ss_pred -C-CEEEEECHHHHCCCHHHHH---HHHHHHHHHHHHCCEEEEECCCCHHHCCCCHHH--HHHHHHCCCEEECCCCCHHH
T ss_conf -8-9999966333437837899---999999999865282898678882320320177--99999688568527999999
Q ss_pred HHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHH
Q ss_conf 9999986127665410351211178999998654
Q gi|254780163|r 372 AIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVR 405 (798)
Q Consensus 372 ~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~r 405 (798)
-..||+.. -.-+++.++++++.+.+.-..|
T Consensus 164 ~~~iL~k~----~~~r~i~i~~~vi~yl~~r~~R 193 (226)
T TIGR03420 164 KIAALQSR----AARRGLQLPDEVADYLLRHGSR 193 (226)
T ss_pred HHHHHHHH----HHHCCCCCCHHHHHHHHHHCCC
T ss_conf 99999999----9985998899999999986379
No 138
>KOG0731 consensus
Probab=98.94 E-value=1.2e-08 Score=81.21 Aligned_cols=126 Identities=32% Similarity=0.445 Sum_probs=84.5
Q ss_pred HHHHHCHHHHHHHHHHHHHH-------HHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCC
Q ss_conf 46653458999999999877-------52044565787406886143200388999998730477337720688612465
Q gi|254780163|r 476 GTVVYGQEEAIKKLSSSIKI-------ARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHA 548 (798)
Q Consensus 476 ~~~v~GQ~~ai~~v~~~i~~-------~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~ 548 (798)
-+-|.|+|+|.+.+-+-+.- .+.|.+- |-|+ |++||+|+|||-|||+.|-.-+.+|+.+.-|||.|
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKi---PkGv-LL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE--- 382 (774)
T KOG0731 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKI---PKGV-LLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE--- 382 (774)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCC---CCCE-EEECCCCCCHHHHHHHHHCCCCCCEEEECHHHHHH---
T ss_conf 0102670899999999999843989998747767---6751-78789998678999988530589646413378888---
Q ss_pred CCHHCCCCCHHCCCCCC--CCCCHHHHHCCCEEEEECCHHHC------------CHHHHHHHHHHHH--HHHCCCCCCCE
Q ss_conf 30110478000256444--31003555158517774044550------------2899999999877--75021779977
Q gi|254780163|r 549 VSRLIGAPPGYVGFGQG--GILADSVDQNPYSVVLLDEIEKS------------HPDVLNILLQIMD--YGILTDQSGKK 612 (798)
Q Consensus 549 vs~LiGappGYvG~~eg--g~Lte~vr~~P~sVvl~DEiEKA------------h~~v~~~llqild--~G~ltd~~Gr~ 612 (798)
.|||-+.. --|...-|.+--|+|+.|||+-- +.+=-+.|-|+|= ||..+
T Consensus 383 ---------~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~------ 447 (774)
T KOG0731 383 ---------MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET------ 447 (774)
T ss_pred ---------HHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC------
T ss_conf ---------76034348889999874326980797145420031255666678880788899988787527767------
Q ss_pred ECCCCEEEEEECC
Q ss_conf 6125429999424
Q gi|254780163|r 613 ISFRNVILIMTTN 625 (798)
Q Consensus 613 vdf~n~iii~TsN 625 (798)
+ ++.|++.++|
T Consensus 448 -~-~~vi~~a~tn 458 (774)
T KOG0731 448 -S-KGVIVLAATN 458 (774)
T ss_pred -C-CCEEEEECCC
T ss_conf -7-8479981168
No 139
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.93 E-value=3.8e-08 Score=77.72 Aligned_cols=151 Identities=26% Similarity=0.385 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHH--H
Q ss_conf 22217899999999862267787489667641166899999999854898834520144554046753063431237--8
Q gi|254780163|r 205 ILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDF--E 282 (798)
Q Consensus 205 PVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~f--e 282 (798)
.++|+++++..+..-+...+ +++|.|+||||||.+++.+|+.+. ..++.+....-+..+-..|.+ .
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~~l~----------~~~~~i~~t~~l~p~d~~G~~~~~ 92 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALARALG----------LPFVRIQCTPDLLPSDLLGTYAYA 92 (329)
T ss_pred CCCCCHHHHHHHHHHHHCCC--CEEEECCCCCCHHHHHHHHHHHHC----------CCCEEEECCCCCCHHHHCCHHHHH
T ss_conf 55266999999999998599--778779898777999999999838----------981899568998888820568887
Q ss_pred HHHH--HHHHHHCC--CCC--EEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEE--------------EEEECCH
Q ss_conf 9999--99987203--898--39997361663015544434477788887663026603--------------8873048
Q gi|254780163|r 283 ERIK--KIVKEIES--YAN--AILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVR--------------CIGSTTY 342 (798)
Q Consensus 283 ~r~~--~~~~~~~~--~~~--~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~--------------~IgatT~ 342 (798)
.+.+ ........ -.+ .|||+|||-.. ..+.-|.|-++|..+.+. +|++..+
T Consensus 93 ~~~~~~~~~~~~~gpl~~~~~~ill~DEInra---------~p~~q~aLl~~l~e~~vt~~~~~~~~~~~~f~viaT~Np 163 (329)
T COG0714 93 ALLLEPGEFRFVPGPLFAAVRVILLLDEINRA---------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNP 163 (329)
T ss_pred HHHCCCCEEEEECCCCCCCCCEEEEEECCCCC---------CHHHHHHHHHHHHHCEEEECCCCCCCCCCCCEEEEECCC
T ss_conf 66425771898468733451338998703458---------988999999999726897079665337998789982686
Q ss_pred HHHHHHHHCCHHHHHHC-EEEEECCCCHHHHHHHH
Q ss_conf 99999852011143200-14430687868999999
Q gi|254780163|r 343 SEYRQFFEKDKALVRRF-QKIDVSEPSIEDAIEIV 376 (798)
Q Consensus 343 ~ey~~~~e~d~al~rrF-~~i~v~ep~~~~~~~iL 376 (798)
.||.-..+-..|+.+|| =.+.++-|..++...++
T Consensus 164 ~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i 198 (329)
T COG0714 164 GEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERII 198 (329)
T ss_pred CCCCCCCCCCHHHHCCCEEEEECCCCCCHHHHHHH
T ss_conf 76578878998888103887764899738899999
No 140
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=5.2e-08 Score=76.70 Aligned_cols=43 Identities=33% Similarity=0.444 Sum_probs=23.8
Q ss_pred HHHC-HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 6534-58999999999877520445657874068861432003889999987
Q gi|254780163|r 478 VVYG-QEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLA 528 (798)
Q Consensus 478 ~v~G-Q~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la 528 (798)
+++| |++++..+.+++.. +|.--++||.||.|+||+.+|+++|
T Consensus 6 ~~~~~Q~~i~~~L~~~i~~--------~rl~HA~Lf~Gp~G~GK~~~A~~~A 49 (329)
T PRK08058 6 QLTALQPIVVKMLQNSIAK--------NRLAHAYLFEGAKGTGKKATALWLA 49 (329)
T ss_pred HHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 8883189999999999985--------9966156557899988999999999
No 141
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.91 E-value=6.4e-08 Score=76.08 Aligned_cols=170 Identities=24% Similarity=0.401 Sum_probs=105.1
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCH-HHHHHHHHHHHHC----CCCCE
Q ss_conf 778748966764116689999999985489883452014455404675306343123-7899999998720----38983
Q gi|254780163|r 224 SKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGD-FEERIKKIVKEIE----SYANA 298 (798)
Q Consensus 224 ~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~-fe~r~~~~~~~~~----~~~~~ 298 (798)
.|+|.+|||+.|+|||-|+.-||+.+ +||-...+..-+ .-+.|.|+ -|.-+..++..+. .+..=
T Consensus 108 ~KsNILliGPTG~GKTlla~tLAk~l---~vPF~iaDAT~l--------TEaGYVGeDVE~ii~~Llq~Ad~dve~Ae~G 176 (411)
T PRK05342 108 QKSNILLIGPTGSGKTLLAQTLARIL---NVPFAIADATTL--------TEAGYVGEDVENILLKLLQAADYDVEKAQRG 176 (411)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEEECEE--------CCCCCCCCCHHHHHHHHHHHCCCCHHHHHCC
T ss_conf 34538998999977889999999986---999899861200--------1267456079999999999828889988368
Q ss_pred EEEECCHHHHHCCCCCCCCCCCHH------HHHHHHHCCC-----------------------CEEEEEECCHHH-----
Q ss_conf 999736166301554443447778------8887663026-----------------------603887304899-----
Q gi|254780163|r 299 ILYIDEIHTLVGAGSASGISVDAS------NLLKPALSSG-----------------------AVRCIGSTTYSE----- 344 (798)
Q Consensus 299 ilfideih~ligag~~~g~~~d~a------n~lkP~L~rg-----------------------~~~~IgatT~~e----- 344 (798)
|.|||||.-|--.+.+.+.+-|+| .+|| .+.-. .|-+|.+-.+..
T Consensus 177 IV~IDEIDKIarks~~~s~trDVSgEGVQqaLLk-iiEGt~v~vp~~ggrkhp~~~~~~idT~nILFI~gGAF~GL~~II 255 (411)
T PRK05342 177 IVYIDEIDKIARKSENPSITRDVSGEGVQQALLK-ILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKII 255 (411)
T ss_pred EEEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHH-HHCCCEECCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHH
T ss_conf 2888502345424788888777651248999999-875871411888777787765167614717999115533589999
Q ss_pred -------------------------HHHHHHC-C-------HHHHHHCEE-EEECCCCHHHHHHHHH----HHHHHHHHH
Q ss_conf -------------------------9998520-1-------114320014-4306878689999998----612766541
Q gi|254780163|r 345 -------------------------YRQFFEK-D-------KALVRRFQK-IDVSEPSIEDAIEIVK----GIKPYFEEH 386 (798)
Q Consensus 345 -------------------------y~~~~e~-d-------~al~rrF~~-i~v~ep~~~~~~~iL~----~~~~~ye~~ 386 (798)
+-++++. | |-|--||-. +.+++.+.++-++||. .+-..|.+.
T Consensus 256 ~~R~~~~~iGF~~~~~~~~~~~~~~~l~~v~p~DLi~fGlIPEfiGRlPViv~L~~L~~~~L~~ILtePkNaLikQY~~L 335 (411)
T PRK05342 256 KQRLGKSGIGFGAEVKSKDEKDLGELLAQVEPEDLVKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKL 335 (411)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCHHHHCCCCEEEECCCCCHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 86357887677887664110005678762798788873883776146640546244799999999658741599999999
Q ss_pred C-----CCEECCHHHHHHHHHHHH
Q ss_conf 0-----351211178999998654
Q gi|254780163|r 387 H-----QLRYSKEAIRAAVQLSVR 405 (798)
Q Consensus 387 h-----~v~~~~~al~~av~ls~r 405 (798)
. .+.|+++||.+.++.+-.
T Consensus 336 F~~dgV~L~Ft~~AL~~IA~~A~~ 359 (411)
T PRK05342 336 FEMDGVELEFTDDALEAIAKKAIE 359 (411)
T ss_pred HHHCCCEEEECHHHHHHHHHHHHH
T ss_conf 975496799868999999999998
No 142
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=2.7e-08 Score=78.73 Aligned_cols=197 Identities=21% Similarity=0.263 Sum_probs=126.5
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCE-EEECCCCCHHHHHHHHHHHHHHCCC---------CCH----------
Q ss_conf 77548611222178999999998622677874-8966764116689999999985489---------883----------
Q gi|254780163|r 197 KVKKGKVDILVGRHEEINRTIQILCRRSKNNP-LYVGDPGVGKTAIAEGFAKQIVDGM---------VPD---------- 256 (798)
Q Consensus 197 ~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~-~lvG~~gvGktaive~la~~i~~~~---------vp~---------- 256 (798)
+-|=..++-|||-+--++-+...|...+=++. ++.|.-|||||+++.-||.-+.... -|-
T Consensus 9 k~RP~~F~~~vGQ~~v~~~l~na~~~~r~~haylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~C~~i~ 88 (721)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRACTEID 88 (721)
T ss_pred HHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 40798665532859999999999971997544750279988898999999999768998667898788787765468775
Q ss_pred HHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCC---CCC-EEEEECCHHHHHCCCCCCCCCCCHHH-HHHHHHC-
Q ss_conf 45201445540467530634312378999999987203---898-39997361663015544434477788-8876630-
Q gi|254780163|r 257 ILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIES---YAN-AILYIDEIHTLVGAGSASGISVDASN-LLKPALS- 330 (798)
Q Consensus 257 ~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~---~~~-~ilfideih~ligag~~~g~~~d~an-~lkP~L~- 330 (798)
.=+..-++++|.++ .+|- +.++.+++.+.- .+. -|..|||+|+|- ..+-| +|| -|.
T Consensus 89 ~g~~~d~~EiDaas------~~~v--~~~r~l~~~~~y~P~~~~~KvyiiDevhmls---------~~afnalLK-tlEe 150 (721)
T PRK12323 89 AGRFVDYIEMDAAS------NRGV--DEMAQLLDQAVYAPTAGRFKVYMIDEVHMLT---------NHAFNAMLK-TLEE 150 (721)
T ss_pred CCCCCCEEEEECCC------CCCH--HHHHHHHHHCCCCCCCCCEEEEEEECCCCCC---------HHHHHHHHH-HHCC
T ss_conf 68987647743676------7888--9999999854558876644699985400058---------999999998-4017
Q ss_pred -CCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCC
Q ss_conf -2660388730489999985201114320014430687868999999861276654103512111789999986542015
Q gi|254780163|r 331 -SGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTS 409 (798)
Q Consensus 331 -rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~ 409 (798)
-.-+.+|-|||.- +|.- -.-|.| -|....+--+.++-..-|..+- ..-++.|.++||....+.+.--+.|
T Consensus 151 PP~hv~FilaTT~~--~Kip--~TilSR-c~~f~~~~~~~~~i~~~l~~i~----~~E~i~~~~~al~~ia~~a~Gs~RD 221 (721)
T PRK12323 151 PPPHVKFILATTDP--QKIP--VTVLSR-CLQFNLKQMPPGHIVSHLDAIL----GQEGIGHEGNALRLLAQAAHGSMRD 221 (721)
T ss_pred CCCCEEEEEECCCH--HHCC--HHHHHH-HHHCCCCCCCHHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHCCCCHHH
T ss_conf 97553899943863--4485--889877-6542347899999999999999----9839977999999999975896476
Q ss_pred CCCHHHHHHHHHHHHHH
Q ss_conf 55646798899865333
Q gi|254780163|r 410 RKLPDKAIDVIDEAGAS 426 (798)
Q Consensus 410 r~lPdkAidllDea~a~ 426 (798)
|+.|||.|-|.
T Consensus 222 ------alslldQaia~ 232 (721)
T PRK12323 222 ------ALSLTDQAIAY 232 (721)
T ss_pred ------HHHHHHHHHHH
T ss_conf ------88899999986
No 143
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.90 E-value=5.2e-07 Score=69.54 Aligned_cols=123 Identities=24% Similarity=0.334 Sum_probs=70.1
Q ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC--CC-----C-EEEEEHHHHHCCCC
Q ss_conf 6653458999999999877520445657874068861432003889999987304--77-----3-37720688612465
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL--GV-----Q-LLRFDMSEYMERHA 548 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~--~~-----~-lir~dmsey~e~~~ 548 (798)
..||||+.++..+..++... |.--.|||.||.|||||-+|+.+|..+ +. + -..-.|....+
T Consensus 14 ~evIGQe~iv~~L~nAi~~~--------Rl~HAYLFsGPrGvGKTt~ArifAkaLnC~~~~~~~PCg~C~sC~~i~~--- 82 (523)
T PRK08451 14 DELIGQESVSKTLSLALDNN--------RLAHAYLFSGLRGSGKTSSARIFSRALVCEQGPSSTPCGTCAQCQAALE--- 82 (523)
T ss_pred HHCCCCHHHHHHHHHHHHCC--------CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC---
T ss_conf 44049499999999999859--------9671587578998688999999999975999999898887888999864---
Q ss_pred CCHHCCCCCHHC--------CCCCCCCCCHHHHHCC----CEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCC
Q ss_conf 301104780002--------5644431003555158----5177740445502899999999877750217799776125
Q gi|254780163|r 549 VSRLIGAPPGYV--------GFGQGGILADSVDQNP----YSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFR 616 (798)
Q Consensus 549 vs~LiGappGYv--------G~~egg~Lte~vr~~P----~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~ 616 (798)
|.-|-++ |-++=-.|.+.++..| |-|+++||++.-+++-+|.||..|++- =.
T Consensus 83 -----g~hpDViEiDaasn~gID~IReLie~~~~~P~~gryKV~IIDEah~Lt~~A~NALLKTLEEP-----------P~ 146 (523)
T PRK08451 83 -----GRHIDIIEMDAASNRGIDDIRNLIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP-----------PS 146 (523)
T ss_pred -----CCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCC-----------CC
T ss_conf -----89998551055333689999999997235886797279998260304899999999970389-----------87
Q ss_pred CEEEEEECCC
Q ss_conf 4299994242
Q gi|254780163|r 617 NVILIMTTNA 626 (798)
Q Consensus 617 n~iii~TsN~ 626 (798)
++++||.|+-
T Consensus 147 ~vvFILaTTe 156 (523)
T PRK08451 147 YVKFILATTD 156 (523)
T ss_pred CCEEEEECCC
T ss_conf 8379997599
No 144
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=98.90 E-value=5.7e-07 Score=69.22 Aligned_cols=19 Identities=37% Similarity=0.422 Sum_probs=9.5
Q ss_pred CCCCCCCHHHHHHHHHCCC
Q ss_conf 4434477788887663026
Q gi|254780163|r 314 ASGISVDASNLLKPALSSG 332 (798)
Q Consensus 314 ~~g~~~d~an~lkP~L~rg 332 (798)
+.|+-=|+-.+|--+++-|
T Consensus 210 a~Gs~Rdalsl~dqaia~~ 228 (717)
T PRK08853 210 ADGSMRDALSLTDQAIALG 228 (717)
T ss_pred CCCCHHHHHHHHHHHHHHC
T ss_conf 6883778888999999965
No 145
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=3.7e-08 Score=77.77 Aligned_cols=225 Identities=24% Similarity=0.263 Sum_probs=124.4
Q ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHH---------CCCCEEEEEHH------
Q ss_conf 665345899999999987752044565787406886143200388999998730---------47733772068------
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFA---------LGVQLLRFDMS------ 541 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~---------~~~~lir~dms------ 541 (798)
+-|+||++|..++-- +-+|-+ .+||.||+|+|||.+|+.+... +|.+.|..=-.
T Consensus 179 ~DV~GQ~~AKrAlei----AAAGgH-------nLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~~~~~~~~ 247 (490)
T COG0606 179 KDVKGQEQAKRALEI----AAAGGH-------NLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGC 247 (490)
T ss_pred HHHCCCHHHHHHHHH----HHHCCC-------CEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 664384999999999----984388-------678756998865676423102599987088899988876354324678
Q ss_pred ------HHHCCC-CC--CHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCC--CCC
Q ss_conf ------861246-53--0110478000256444310035551585177740445502899999999877750217--799
Q gi|254780163|r 542 ------EYMERH-AV--SRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTD--QSG 610 (798)
Q Consensus 542 ------ey~e~~-~v--s~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd--~~G 610 (798)
-|.-+| |. ..|+| || |--+-|. |-.--+.|++|||.--=.++|++.|-|-|++|..+= ..+
T Consensus 248 ~~~~~rPFr~PHHsaS~~aLvG---GG-~~p~PGe----IsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~ 319 (490)
T COG0606 248 PLKIHRPFRAPHHSASLAALVG---GG-GVPRPGE----ISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGS 319 (490)
T ss_pred CCCEECCCCCCCCCCHHHHHHC---CC-CCCCCCC----EEEECCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 6411078768874022889737---89-9889873----54303877886144210599999973741258179997587
Q ss_pred CEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCH-----HHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHH------
Q ss_conf 7761254299994242145533036898821114-----88999998728878817768289628899999999------
Q gi|254780163|r 611 KKISFRNVILIMTTNAGALEMSKARIGFGSSRND-----DADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQ------ 679 (798)
Q Consensus 611 r~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~-----~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~------ 679 (798)
+..-..+-..+...|.- ..|+...... ......-.+..+--|+.|||..|--..++..++.+
T Consensus 320 ~v~ypa~Fqlv~AmNpc-------pcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~~~~~~~~e 392 (490)
T COG0606 320 KVTYPARFQLVAAMNPC-------PCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGELIRQVPTGE 392 (490)
T ss_pred EEEEEEEEEEHHHCCCC-------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHCCCCCCC
T ss_conf 16872126775223999-------76478887777578878877889874378775524110046789787614789898
Q ss_pred ----HHHHHHHHHHHHHHH-CC--CEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf ----999999999999986-69--8899988999999971898101532679999986
Q gi|254780163|r 680 ----VVHKFIMKLELQLQE-KG--ISFHFSEEVINWLVSHGYDVKMGARPLERIIKEH 730 (798)
Q Consensus 680 ----i~~~~l~~l~~~l~~-~~--i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~ 730 (798)
+-.....--..++++ .+ +.-.++...++. .|.-..-++.-|+..+++.
T Consensus 393 ss~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k---~~~L~~~~~~~L~~al~~~ 447 (490)
T COG0606 393 SSAGVRERVAKAREAQIARAGRIGINAELSEEALRK---FCALQREDADLLKAALERL 447 (490)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHH---HCCCCHHHHHHHHHHHHHC
T ss_conf 758899999999999999853568542128999997---6265776799999999966
No 146
>pfam01637 Arch_ATPase Archaeal ATPase. This family contain a conserved P-loop motif that is involved in binding ATP. This family is almost exclusively found in archaebacteria and particularly in Methanococcus jannaschii that encodes sixteen members of this family.
Probab=98.89 E-value=4.9e-07 Score=69.71 Aligned_cols=189 Identities=13% Similarity=0.055 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHH--------------
Q ss_conf 221789999999986226778748966764116689999999985489883452014455404675--------------
Q gi|254780163|r 206 LVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNL-------------- 271 (798)
Q Consensus 206 VIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l-------------- 271 (798)
.+||++|++.+.+.+.+-.-+..++.|.-++|||+++...+.+.-....+ .+|-.+...-
T Consensus 1 F~~Re~EL~~L~~~~~~~~~~~ivi~G~RR~GKTsLi~~~~~~~~~~~~~------~i~~~~~~~~~~~~~~~~~~~~~l 74 (223)
T pfam01637 1 FFDREKELKELEEWAERGTYPIIVVYGPRRCGKTALLREFLEELRELGYR------VIYYDPLRREFEEKLDRFEEAKRL 74 (223)
T ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCE------EEEEECHHHHHHHHHHHHHHHHHH
T ss_conf 98979999999999966997189998688787999999999863346852------899951444379999988888999
Q ss_pred ---HC--CCCCCCH----HHHHHHHHHHHHCCC-CCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECC
Q ss_conf ---30--6343123----789999999872038-9839997361663015544434477788887663026603887304
Q gi|254780163|r 272 ---IA--GTRYRGD----FEERIKKIVKEIESY-ANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTT 341 (798)
Q Consensus 272 ---~a--g~~~rg~----fe~r~~~~~~~~~~~-~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~IgatT 341 (798)
+. .-+..++ ...-+..+++.+.+. .++|++|||++.+++..+...---...++.--.+....+..|-+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDEfq~l~~~~~~~~~~~~l~~~~d~~~~~~~~~~I~~GS 154 (223)
T pfam01637 75 AEALGDALPKIGIAKSKLAFLSLTLLFELLKRKGKKIAIIIDEVQYAIGLNGAESYVKLLLNLIDYPPKEYHLIVVLCGS 154 (223)
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 99987651233222112078899999999985599659997016776402443059999999999752457758999727
Q ss_pred -HHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHH
Q ss_conf -899999852011143200144306878689999998612766541035121117899999865
Q gi|254780163|r 342 -YSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSV 404 (798)
Q Consensus 342 -~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ 404 (798)
..--++.+..+..|--|+..|.+.+-+.+++.+.++..- ...++.++++.++.++.+..
T Consensus 155 ~~~~m~~~~~~~~plygR~~~i~l~p~~~~~~~efl~~~f----~e~~~~~~~~~~~~iy~~~g 214 (223)
T pfam01637 155 SEGLTIELLDYKSPLYGRHRWALLKPFDFETAWNFLREGF----EELYEPGPKEEFEEVWRLLG 214 (223)
T ss_pred HHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHH----HHHCCCCCHHHHHHHHHHHC
T ss_conf 1999999862056535750227726899899999999999----98478999899999999969
No 147
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.88 E-value=5.7e-08 Score=76.42 Aligned_cols=200 Identities=24% Similarity=0.315 Sum_probs=121.5
Q ss_pred HHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCC
Q ss_conf 10000246653458999999999877520445657874068861432003889999987304773377206886124653
Q gi|254780163|r 470 NLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAV 549 (798)
Q Consensus 470 ~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~v 549 (798)
.+.-..-...+||++..+.+.-.|+-++ ..+.++.-.||.||+|.|||-||..+|..++.++-.---.-. |
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk----~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l-e---- 89 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAK----KRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL-E---- 89 (332)
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHH----HCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCC-C----
T ss_conf 3586548885183999999999999998----449876747864799876888999999985677376366201-5----
Q ss_pred CHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCC--CC---CCEE--CCC-CEEEE
Q ss_conf 0110478000256444310035551585177740445502899999999877750217--79---9776--125-42999
Q gi|254780163|r 550 SRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTD--QS---GKKI--SFR-NVILI 621 (798)
Q Consensus 550 s~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd--~~---Gr~v--df~-n~iii 621 (798)
-|| |=-+.||. -.|+.|++.|||..-.|.|..+|+-.|+|-++-= +. -|.| |.- =|+|=
T Consensus 90 ------K~g----DlaaiLt~---Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 90 ------KPG----DLAAILTN---LEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred ------CHH----HHHHHHHC---CCCCCEEEEEHHHHCCHHHHHHHHHHHHHEEEEEEECCCCCCCEEECCCCCEEEEE
T ss_conf ------726----59999863---98677677725531474289896467531057789724875534763799813751
Q ss_pred EECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 94242145533036898821114889999987288788177682896288999999999999999999999866988999
Q gi|254780163|r 622 MTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHF 701 (798)
Q Consensus 622 ~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~ 701 (798)
-|+-+|. ...-|+..| --+.-++-.+.+++.+|+.+.- +-..+++
T Consensus 157 ATTr~G~------------------lt~PLrdRF--------Gi~~rlefY~~~eL~~Iv~r~a---------~~l~i~i 201 (332)
T COG2255 157 ATTRAGM------------------LTNPLRDRF--------GIIQRLEFYTVEELEEIVKRSA---------KILGIEI 201 (332)
T ss_pred ECCCCCC------------------CCCHHHHHC--------CCEEEEECCCHHHHHHHHHHHH---------HHHCCCC
T ss_conf 0134664------------------563368862--------8604540588899999999888---------8738776
Q ss_pred CHHHHHHHHHCCC-CCCCCCHHHHHH
Q ss_conf 8899999997189-810153267999
Q gi|254780163|r 702 SEEVINWLVSHGY-DVKMGARPLERI 726 (798)
Q Consensus 702 ~~~~~~~l~~~~~-~~~~GAR~l~r~ 726 (798)
++++...++.+.. .|..--|-|||+
T Consensus 202 ~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 202 DEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 85799999986369938999999999
No 148
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.88 E-value=1.5e-06 Score=66.29 Aligned_cols=27 Identities=7% Similarity=-0.152 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 999999999999999998669889998
Q gi|254780163|r 676 IIRQVVHKFIMKLELQLQEKGISFHFS 702 (798)
Q Consensus 676 ~~~~i~~~~l~~l~~~l~~~~i~l~~~ 702 (798)
=..-|..+.+..+.++|+-+..-..++
T Consensus 686 W~~Li~~L~l~Glv~QLAlNS~l~~~~ 712 (816)
T PRK07003 686 WPTLAARLPLKGVAYQLAFNSELTAVD 712 (816)
T ss_pred HHHHHHHCCCCHHHHHHHHHCEEECCC
T ss_conf 999998678524999999635663134
No 149
>TIGR01817 nifA Nif-specific regulatory protein; InterPro: IPR010113 This entry represents NifA, a DNA-binding regulatory protein for nitrogen fixation. Not included in this group are: the homologue in Aquifex aeolicus (which lacks nitrogenase), transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. In diazotrophic proteobacteria, the sigma54-dependent activator NifA activates transcription of the nif (nitrogen fixation) genes by a conserved mechanism common to members of the enhancer binding protein family. Although NifA proteins have similar domain structures, both transcriptional regulation of nifA expression and posttranslational regulation of NifA activity by oxygen and fixed nitrogen vary significantly from one organism to another. In Klebsiella pneumoniae and Azotobacter vinelandii, nifA is co-ordinately transcribed with a second gene, nifL, whose product inhibits NifA activity in response to oxygen and fixed nitrogen .; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0009399 nitrogen fixation.
Probab=98.87 E-value=9.3e-08 Score=74.90 Aligned_cols=233 Identities=21% Similarity=0.338 Sum_probs=173.8
Q ss_pred CHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC---CCCEEEEEHHHHHCCCCC
Q ss_conf 00246653458999999999877520445657874068861432003889999987304---773377206886124653
Q gi|254780163|r 473 KNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL---GVQLLRFDMSEYMERHAV 549 (798)
Q Consensus 473 ~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~---~~~lir~dmsey~e~~~v 549 (798)
.-...-|||...|+..|.+.++.. ..-| -+.|+.|=||+||=-.||++=+.+ .++||+|||.--.|.===
T Consensus 208 ~~~~~~i~G~Spam~~v~~~~~~v----A~~n---STVLlRGESGTGKEl~A~AIH~~SpR~~~PFVK~NCAALse~lLE 280 (574)
T TIGR01817 208 SGKEDGIVGKSPAMRQVVDQIKVV----ARSN---STVLLRGESGTGKELIAKAIHELSPRAKRPFVKLNCAALSETLLE 280 (574)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH----CCCC---CEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCCHHH
T ss_conf 234474012478999999886520----1317---667850565744334442340466455788545006447761124
Q ss_pred CHHCCCCCHHCCCCCCCCCCHHHHHCCC-------EEEEECCHHHCCHHHHHHHHHHHHHHHCC---CCCCCEECCCCEE
Q ss_conf 0110478000256444310035551585-------17774044550289999999987775021---7799776125429
Q gi|254780163|r 550 SRLIGAPPGYVGFGQGGILADSVDQNPY-------SVVLLDEIEKSHPDVLNILLQIMDYGILT---DQSGKKISFRNVI 619 (798)
Q Consensus 550 s~LiGappGYvG~~egg~Lte~vr~~P~-------sVvl~DEiEKAh~~v~~~llqild~G~lt---d~~Gr~vdf~n~i 619 (798)
|-|.| ||+ |-.|-||+++-= .=++||||==-.|..+-=||-||.||-+. -++-=+|| .=
T Consensus 281 SELFG-------HEK-GAFTGA~~~RkGRFElAdGGTLFLDEIGEISPaFQAKLLRVLQEGEFERVGG~~TlKVd---VR 349 (574)
T TIGR01817 281 SELFG-------HEK-GAFTGAVAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVD---VR 349 (574)
T ss_pred HHHHC-------CCC-HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCEEEEEE---EE
T ss_conf 54513-------430-14688875177753302788320000146785688899887521002532787248873---67
Q ss_pred EEEECCCCHHHHHHCCCCCCCCCCHHHHHHHH-HHHCCHHHHCCCCEEEECC-CC--CHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99942421455330368988211148899999-8728878817768289628-89--99999999999999999999866
Q gi|254780163|r 620 LIMTTNAGALEMSKARIGFGSSRNDDADKEAL-RNFLSPEFLNRLDSIIPFF-PL--SSDIIRQVVHKFIMKLELQLQEK 695 (798)
Q Consensus 620 ii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l-~~~f~peflnRid~ii~F~-~l--~~~~~~~i~~~~l~~l~~~l~~~ 695 (798)
||+-|| .+..++| +..||-.+.=||..+=.|- || -.+|+-.+++.+|++++ .++
T Consensus 350 lvaATN-------------------rdLE~aV~~GeFRaDLYYRinVvPl~lPPLRER~~DIP~LA~~fL~kf~---~en 407 (574)
T TIGR01817 350 LVAATN-------------------RDLEEAVAKGEFRADLYYRINVVPLILPPLRERREDIPLLAEAFLEKFN---REN 407 (574)
T ss_pred EEECCC-------------------CCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH---HHH
T ss_conf 886137-------------------3558897278973023554422234078777873116899999999876---651
Q ss_pred CCE-EEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECC
Q ss_conf 988-999889999999718981015326799999862359999996296768884899996078
Q gi|254780163|r 696 GIS-FHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKVPLADEILFGKLKKGGGVVKVSLNPD 758 (798)
Q Consensus 696 ~i~-l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~g~~~~~v~~~~~ 758 (798)
+-. |.++++|++.|.. ||=|.. -|.|...|++.= +|. .+++++..++.-+
T Consensus 408 ~R~mL~~~~~Ai~~Lm~-c~wPGN-VRELENC~eRtA-------tLs----~~~~It~~df~c~ 458 (574)
T TIGR01817 408 GRPMLTLSPSAIRVLMS-CKWPGN-VRELENCVERTA-------TLS----RSGTITRSDFSCQ 458 (574)
T ss_pred CCCEEEECHHHHHHHHC-CCCCCC-CEEHHHHHHHHH-------HHC----CCCCCCCCEEEEC
T ss_conf 87203226789989751-789997-400443787787-------541----6885164236642
No 150
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=98.87 E-value=1.6e-06 Score=66.01 Aligned_cols=37 Identities=11% Similarity=0.347 Sum_probs=18.7
Q ss_pred HHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 520144554046753063431237899999998720389839997
Q gi|254780163|r 258 LLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYI 302 (798)
Q Consensus 258 l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfi 302 (798)
-..++||-+|-.-++.- +-..++++-++..+.-++||
T Consensus 117 ~~~yKV~IIDeah~Lt~--------~A~NALLKtLEEPP~~viFI 153 (563)
T PRK06674 117 AVEYKVYIIDEVHMLSI--------GAFNALLKTLEEPPGHVIFI 153 (563)
T ss_pred CCCEEEEEEECHHHCCH--------HHHHHHHHHHHCCCCCEEEE
T ss_conf 78737999854563799--------99999999863887564999
No 151
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.87 E-value=7.1e-07 Score=68.58 Aligned_cols=128 Identities=23% Similarity=0.304 Sum_probs=81.0
Q ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCC-------CCE-----EEEEHHHHH
Q ss_conf 66534589999999998775204456578740688614320038899999873047-------733-----772068861
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALG-------VQL-----LRFDMSEYM 544 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~-------~~l-----ir~dmsey~ 544 (798)
..+|||++.+..+..++...|. --.|||+||.|||||-+|+.+|..+. .+- ..-.|-++.
T Consensus 21 ~~liGQ~~~~~~l~n~i~~~~~--------~~aylf~G~rG~GKTt~Ari~ak~lnc~~~~~~~~~~~~c~~c~~c~~i~ 92 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRL--------AGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEKCTNCISFN 92 (507)
T ss_pred HHHCCCHHHHHHHHHHHHCCCC--------CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 5623939999999999973996--------63477458799788999999999967999888899888888876789986
Q ss_pred CCCCCCHH--CCCCCHHCCCCCCCCCCHHHHHCC----CEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCE
Q ss_conf 24653011--047800025644431003555158----517774044550289999999987775021779977612542
Q gi|254780163|r 545 ERHAVSRL--IGAPPGYVGFGQGGILADSVDQNP----YSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNV 618 (798)
Q Consensus 545 e~~~vs~L--iGappGYvG~~egg~Lte~vr~~P----~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~ 618 (798)
+..++.-+ =+| ---|-++=-.|.+.++..| |-|..+||++.-..+.||.||..|++- =.++
T Consensus 93 ~~~~~dv~EiDaa--s~~gv~~ir~l~~~~~~~p~~~~~kv~iidE~hmls~~a~nallktlEep-----------p~~~ 159 (507)
T PRK06645 93 NHNHPDIIEIDAA--SKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEP-----------PPHI 159 (507)
T ss_pred CCCCCCEEEEECC--CCCCHHHHHHHHHHCCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHCC-----------CCCE
T ss_conf 5899985996378--88888999999863551787674358995214224899999999974278-----------6443
Q ss_pred EEEEECC
Q ss_conf 9999424
Q gi|254780163|r 619 ILIMTTN 625 (798)
Q Consensus 619 iii~TsN 625 (798)
++||.++
T Consensus 160 ~Fi~att 166 (507)
T PRK06645 160 IFIFATT 166 (507)
T ss_pred EEEEECC
T ss_conf 8999748
No 152
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.84 E-value=9.5e-07 Score=67.64 Aligned_cols=129 Identities=25% Similarity=0.387 Sum_probs=79.4
Q ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC-CCCEEE-------EEHHHHHCCCC
Q ss_conf 6653458999999999877520445657874068861432003889999987304-773377-------20688612465
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL-GVQLLR-------FDMSEYMERHA 548 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~-~~~lir-------~dmsey~e~~~ 548 (798)
..|+||++++..+.+++...|. --.|||+||.|+|||-+|+.+|..+ ...-.. -.|-+.....+
T Consensus 16 ~dvvGQe~vv~~L~nai~~~rl--------~HAyLFsGprG~GKTt~ArilAk~LnC~~~~~~~PCg~C~sC~~i~~g~~ 87 (560)
T PRK06647 16 NSLEGQDFVVETLKHSIEKNKI--------ANAYIFSGPRGVGKTSSARAFARCLNCVNGPTIMPCGECFSCKSIDNDSS 87 (560)
T ss_pred HHHCCCHHHHHHHHHHHHCCCC--------CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCC
T ss_conf 4403949999999999974997--------74366328998789999999999965999999888878878888745999
Q ss_pred --CCHHCCCCCHHCCCCCCCCCCHHHHHCC----CEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEE
Q ss_conf --3011047800025644431003555158----5177740445502899999999877750217799776125429999
Q gi|254780163|r 549 --VSRLIGAPPGYVGFGQGGILADSVDQNP----YSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIM 622 (798)
Q Consensus 549 --vs~LiGappGYvG~~egg~Lte~vr~~P----~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~ 622 (798)
+-.+=|+ .-.|-++--.|.+.++..| |-|+++||++.-+.+-+|.||..|++-- .+|++||
T Consensus 88 ~DviEidaa--sn~~VddIR~l~e~v~~~P~~~~yKV~IIDEahmLt~~A~NALLKtLEEPP-----------~~~~FIL 154 (560)
T PRK06647 88 LDVIEIDGA--SNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPP-----------PYIVFIF 154 (560)
T ss_pred CCEEEECCC--CCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHCCC-----------CCEEEEE
T ss_conf 875764364--548889999999986328766870699964656559999999999863488-----------7559999
Q ss_pred ECCC
Q ss_conf 4242
Q gi|254780163|r 623 TTNA 626 (798)
Q Consensus 623 TsN~ 626 (798)
.||-
T Consensus 155 aTte 158 (560)
T PRK06647 155 ATTE 158 (560)
T ss_pred ECCC
T ss_conf 7799
No 153
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=98.84 E-value=2.9e-08 Score=78.52 Aligned_cols=192 Identities=22% Similarity=0.340 Sum_probs=122.1
Q ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCC
Q ss_conf 66534589999999998775204456578740688614320038899999873047733772068861246530110478
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAP 556 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGap 556 (798)
+..|||++-.+.+.-.|+-||. .+-++.=.||.||+|+|||-||..+|..++.++-..--.-..-
T Consensus 4 ~eFiGQ~~vk~~L~l~I~AAk~----R~e~LDH~LL~GPPGLGKTTLA~IiA~Emg~~l~iTsGP~L~k----------- 68 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM----RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----------- 68 (305)
T ss_pred HHCCCCHHHHHHHHHHHHHHHH----CCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCC-----------
T ss_conf 1105828899999999999982----4897341663175687467899999998389326740675547-----------
Q ss_pred CHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCC-----CCCCCEECCC---CEEEEEECCCCH
Q ss_conf 00025644431003555158517774044550289999999987775021-----7799776125---429999424214
Q gi|254780163|r 557 PGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILT-----DQSGKKISFR---NVILIMTTNAGA 628 (798)
Q Consensus 557 pGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~lt-----d~~Gr~vdf~---n~iii~TsN~G~ 628 (798)
|| |=-|.||. + .|..|++.|||+--+|.|-.+|+-.|||=+|- +-..|+|... =|+|=-||-.|
T Consensus 69 Pg----DlaaiLt~-L--~~gDVLFIDEIHRL~p~~EE~LYpAMEDF~lDi~IG~Gp~Ar~v~ldLpPFTLvGATTR~G- 140 (305)
T TIGR00635 69 PG----DLAAILTN-L--EEGDVLFIDEIHRLSPAIEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAG- 140 (305)
T ss_pred HH----HHHHHHHH-C--CCCCEEECCHHHHCCHHHHHHCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCC-
T ss_conf 57----89999970-5--6896310125650483345310530012178778712898525760686944200003477-
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHH
Q ss_conf 55330368988211148899999872887881776828962889999999999999999999998669889998899999
Q gi|254780163|r 629 LEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINW 708 (798)
Q Consensus 629 ~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~ 708 (798)
....-|+..|. ++.|+| -.+.+++.+|+.+.= .-..+++++.+...
T Consensus 141 -----------------~lt~PLrdRFG--~~~rl~------fY~~~EL~~Iv~R~A---------~~L~~ei~~~~a~~ 186 (305)
T TIGR00635 141 -----------------MLTSPLRDRFG--IILRLE------FYTPEELAEIVSRSA---------GLLNIEIEQEAALE 186 (305)
T ss_pred -----------------CCCCCHHHHHH--HHHHCC------CCCHHHHHHHHHHHH---------HHCCCCCCHHHHHH
T ss_conf -----------------41031334544--745402------689878999987533---------44143007789999
Q ss_pred HHHCCC-CCCCCCHHHHH
Q ss_conf 997189-81015326799
Q gi|254780163|r 709 LVSHGY-DVKMGARPLER 725 (798)
Q Consensus 709 l~~~~~-~~~~GAR~l~r 725 (798)
|+++.- .|.-=-|=|||
T Consensus 187 IArrSRGTPRIAnRLLRR 204 (305)
T TIGR00635 187 IARRSRGTPRIANRLLRR 204 (305)
T ss_pred HHHHCCCCHHHHHHHHHH
T ss_conf 987547863788877676
No 154
>KOG0727 consensus
Probab=98.83 E-value=2e-08 Score=79.70 Aligned_cols=135 Identities=30% Similarity=0.547 Sum_probs=90.3
Q ss_pred CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHH----HH
Q ss_conf 04456578740688614320038899999873047733772068861246530110478000256444310035----55
Q gi|254780163|r 498 AGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADS----VD 573 (798)
Q Consensus 498 ~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~----vr 573 (798)
.|+.+ |.|++|+ ||+|+|||.|||++|....-+|||+.-|||-.+ |.| ||-....- -|
T Consensus 184 igidp---prgvlly-gppg~gktml~kava~~t~a~firvvgsefvqk------------ylg--egprmvrdvfrlak 245 (408)
T KOG0727 184 IGIDP---PRGVLLY-GPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK------------YLG--EGPRMVRDVFRLAK 245 (408)
T ss_pred HCCCC---CCCEEEE-CCCCCCHHHHHHHHHHCCCHHEEEECCHHHHHH------------HHC--CCCHHHHHHHHHHH
T ss_conf 08899---8622775-799975789999986126111446301899999------------855--48389999999876
Q ss_pred HCCCEEEEECCHHH-----------CCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCC
Q ss_conf 15851777404455-----------0289999999987775021779977612542999942421455330368988211
Q gi|254780163|r 574 QNPYSVVLLDEIEK-----------SHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSR 642 (798)
Q Consensus 574 ~~P~sVvl~DEiEK-----------Ah~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~ 642 (798)
.+.-|+|+.|||+- |.++|+.+|+.+|.. -|+-..+ .|.-+||.+|-...
T Consensus 246 enapsiifideidaiatkrfdaqtgadrevqril~ellnq---mdgfdq~---~nvkvimatnradt------------- 306 (408)
T KOG0727 246 ENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQ---MDGFDQT---TNVKVIMATNRADT------------- 306 (408)
T ss_pred CCCCCEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH---CCCCCCC---CCEEEEEECCCCCC-------------
T ss_conf 1698379862245676641244446318999999999975---1476766---65589983275556-------------
Q ss_pred CHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHH
Q ss_conf 14889999987288788177682896288999999999
Q gi|254780163|r 643 NDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQV 680 (798)
Q Consensus 643 ~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i 680 (798)
. .++ .++| +|+|.-|-|- |...-..++
T Consensus 307 l----dpa---llrp---grldrkiefp-lpdrrqkrl 333 (408)
T KOG0727 307 L----DPA---LLRP---GRLDRKIEFP-LPDRRQKRL 333 (408)
T ss_pred C----CHH---HCCC---CCCCCCCCCC-CCCHHHHHH
T ss_conf 6----876---6287---6434443577-985466522
No 155
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.83 E-value=5.8e-07 Score=69.19 Aligned_cols=214 Identities=18% Similarity=0.249 Sum_probs=155.2
Q ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC---CCCEEEEEHHHHHCCCCCCHHC
Q ss_conf 6653458999999999877520445657874068861432003889999987304---7733772068861246530110
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL---GVQLLRFDMSEYMERHAVSRLI 553 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~---~~~lir~dmsey~e~~~vs~Li 553 (798)
..++|...++..+..-+++.- ..+ .+.|..|-||+||--+|++.-..+ ..+||++||.-.-|.-==|-|.
T Consensus 245 ~~Iig~S~~m~~~~~~akr~A------~td-stVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELF 317 (560)
T COG3829 245 DDIIGESPAMLRVLELAKRIA------KTD-STVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELF 317 (560)
T ss_pred HHHCCCCHHHHHHHHHHHHHC------CCC-CCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 002058999999999998633------899-8289953788668999999874484347980787643388888888872
Q ss_pred CCCCHHCCCCCCCCCCHHHHH-CC-------CEEEEECCHHHCCHHHHHHHHHHHHHHHCC---CCCCCEECCCCEEEEE
Q ss_conf 478000256444310035551-58-------517774044550289999999987775021---7799776125429999
Q gi|254780163|r 554 GAPPGYVGFGQGGILADSVDQ-NP-------YSVVLLDEIEKSHPDVLNILLQIMDYGILT---DQSGKKISFRNVILIM 622 (798)
Q Consensus 554 GappGYvG~~egg~Lte~vr~-~P-------~sVvl~DEiEKAh~~v~~~llqild~G~lt---d~~Gr~vdf~n~iii~ 622 (798)
|- + .|-.|-|.+. +| ..-++||||---....+--||.+|.++... +.....||+| ||-
T Consensus 318 Gy-------e-~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVR---IIA 386 (560)
T COG3829 318 GY-------E-KGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVR---IIA 386 (560)
T ss_pred CC-------C-CCCCCCCCCCCCCCCEEECCCCEEEEHHHCCCCHHHHHHHHHHHHHCEEEECCCCCCEEEEEE---EEE
T ss_conf 76-------7-764246445799760544169837712320399899999999875353785378875356789---994
Q ss_pred ECCCCHHHHHHCCCCCCCCCCHHHHHHHH-HHHCCHHHHCCCCEEEEC-CCC--CHHHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 42421455330368988211148899999-872887881776828962-889--99999999999999999999866988
Q gi|254780163|r 623 TTNAGALEMSKARIGFGSSRNDDADKEAL-RNFLSPEFLNRLDSIIPF-FPL--SSDIIRQVVHKFIMKLELQLQEKGIS 698 (798)
Q Consensus 623 TsN~G~~~~~~~~~g~~~~~~~~~~~~~l-~~~f~peflnRid~ii~F-~~l--~~~~~~~i~~~~l~~l~~~l~~~~i~ 698 (798)
++|--- .+.+ ...||-.+.=|++.+-++ -|| -++++.-++.-+|.+.++++... -
T Consensus 387 ATN~nL-------------------~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~--v 445 (560)
T COG3829 387 ATNRNL-------------------EKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRN--V 445 (560)
T ss_pred CCCCCH-------------------HHHHHCCCCHHHHEEEECEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCC--C
T ss_conf 257589-------------------9998639616553003040111477723382018999999999999872887--6
Q ss_pred EEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 999889999999718981015326799999862
Q gi|254780163|r 699 FHFSEEVINWLVSHGYDVKMGARPLERIIKEHV 731 (798)
Q Consensus 699 l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i 731 (798)
-.+++++...|...-+-- --|.|..+|++-+
T Consensus 446 ~~ls~~a~~~L~~y~WPG--NVRELeNviER~v 476 (560)
T COG3829 446 KGLSPDALALLLRYDWPG--NVRELENVIERAV 476 (560)
T ss_pred CCCCHHHHHHHHHCCCCC--HHHHHHHHHHHHH
T ss_conf 668999999998689996--0999999999998
No 156
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=3.2e-06 Score=63.89 Aligned_cols=229 Identities=17% Similarity=0.258 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHHHH----CCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCC-C-HHHHEEEEEEEE---HHHHHC---
Q ss_conf 2217899999999862----267787489667641166899999999854898-8-345201445540---467530---
Q gi|254780163|r 206 LVGRHEEINRTIQILC----RRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMV-P-DILLGARIFSLD---MGNLIA--- 273 (798)
Q Consensus 206 VIGRd~EI~riiqIL~----RR~KNn~~lvG~~gvGktaive~la~~i~~~~v-p-~~l~~~~i~~ld---~~~l~a--- 273 (798)
+-+||.||+++..+|. --+..|.++.|.||+|||+++.-+++.+.+... + ..--|+..+.-- ...+..
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHC
T ss_conf 10348899999999999855899860799889998732899999999973315675799951307878799999999826
Q ss_pred CCCCCCH-HHHHHHHHHHHHCC-CCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHH-HHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 6343123-78999999987203-898399973616630155444344777888876-63026603887304899999852
Q gi|254780163|r 274 GTRYRGD-FEERIKKIVKEIES-YANAILYIDEIHTLVGAGSASGISVDASNLLKP-ALSSGAVRCIGSTTYSEYRQFFE 350 (798)
Q Consensus 274 g~~~rg~-fe~r~~~~~~~~~~-~~~~ilfideih~ligag~~~g~~~d~an~lkP-~L~rg~~~~IgatT~~ey~~~~e 350 (798)
.....|- .-+-++.+.+.+.. .+.+|+..||+-.|+.... .. .-++++- ......+-+||.+....|..++
T Consensus 99 ~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---~~--LY~L~r~~~~~~~~v~vi~i~n~~~~~~~l- 172 (366)
T COG1474 99 KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---EV--LYSLLRAPGENKVKVSIIAVSNDDKFLDYL- 172 (366)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCC---CH--HHHEECCCCCCCEEEEEEEEECCHHHHHHH-
T ss_conf 899767632689999999777418759999764765415464---14--551112477675379999973548899987-
Q ss_pred CCHHHHHHCEE--EEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 01114320014--4306878689999998612766541035121117899999865420155564679889986533332
Q gi|254780163|r 351 KDKALVRRFQK--IDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEAGASQI 428 (798)
Q Consensus 351 ~d~al~rrF~~--i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea~a~~~ 428 (798)
|+-+..+|++ |..++=+.++-..||+.-.. +.+-.=.+++++++.|...+.+.-.| --+|||+|..||-.+
T Consensus 173 -d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~--~~~~~~~~~~~vl~lia~~~a~~~GD---AR~aidilr~A~eiA- 245 (366)
T COG1474 173 -DPRVKSSLGPSEIVFPPYTAEELYDILRERVE--EGFSAGVIDDDVLKLIAALVAAESGD---ARKAIDILRRAGEIA- 245 (366)
T ss_pred -HHHHHHCCCCCEEEECCCCHHHHHHHHHHHHH--HHHCCCCCCHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHH-
T ss_conf -56676506876355289898999999999998--54046874803999999988761864---776089999999986-
Q ss_pred HHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 1144322113657899986631
Q gi|254780163|r 429 LQPLSKRRKFITEKDIKKTIAS 450 (798)
Q Consensus 429 ~~~~~~~~~~~~~~~i~~~~~~ 450 (798)
.......+++.++......
T Consensus 246 ---e~~~~~~v~~~~v~~a~~~ 264 (366)
T COG1474 246 ---EREGSRKVSEDHVREAQEE 264 (366)
T ss_pred ---HHCCCCCCCHHHHHHHHHH
T ss_conf ---5407885370047889987
No 157
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.81 E-value=4.2e-06 Score=63.00 Aligned_cols=40 Identities=10% Similarity=0.267 Sum_probs=21.8
Q ss_pred CHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 834520144554046753063431237899999998720389839997
Q gi|254780163|r 255 PDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYI 302 (798)
Q Consensus 255 p~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfi 302 (798)
.+....++||-+|-.-|+.... +..+++.++..+.-+.||
T Consensus 114 ~P~~~~yKVyiiDEvhmLs~~a--------fNAlLKtLEEPP~~v~Fi 153 (704)
T PRK08691 114 APTAGKYKVYIIDEVHMLSKSA--------FNAMLKTLEEPPEHVKFI 153 (704)
T ss_pred CCCCCCEEEEEEECHHHCCHHH--------HHHHHHHHCCCCCCEEEE
T ss_conf 8867853599983154438999--------999998614797560899
No 158
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.81 E-value=2.9e-07 Score=71.38 Aligned_cols=155 Identities=19% Similarity=0.343 Sum_probs=102.4
Q ss_pred CCEEEE-CCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHC----CCCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 874896-676411668999999998548988345201445540467530----634312378999999987203898399
Q gi|254780163|r 226 NNPLYV-GDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIA----GTRYRGDFEERIKKIVKEIESYANAIL 300 (798)
Q Consensus 226 Nn~~lv-G~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a----g~~~rg~fe~r~~~~~~~~~~~~~~il 300 (798)
-||++| |.+|+|||.+.++++..+.+.. | +++|+-+....++. ..+- +.. ...-+..+ +- -+|
T Consensus 145 yNPLfIyG~~GlGKTHLl~AIgn~~~~~~-p----~~~v~Y~tae~F~~~~v~al~~-~~~----~~Fr~~yr-~~-DvL 212 (447)
T PRK00149 145 YNPLFIYGGVGLGKTHLLHAIGNYILEKN-P----NAKVVYVSSEKFTNDFVKALRN-NAM----EEFKEKYR-SV-DVL 212 (447)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHC-C----CCEEEEEEHHHHHHHHHHHHHC-CCH----HHHHHHHH-CC-CEE
T ss_conf 78558977998878899999999999858-9----9728995499999999999851-869----99999997-28-854
Q ss_pred EECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEE-CCHHHHHHHHHCCHHHHHHCEE---EEECCCCHHHHHHHH
Q ss_conf 973616630155444344777888876630266038873-0489999985201114320014---430687868999999
Q gi|254780163|r 301 YIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGS-TTYSEYRQFFEKDKALVRRFQK---IDVSEPSIEDAIEIV 376 (798)
Q Consensus 301 fideih~ligag~~~g~~~d~an~lkP~L~rg~~~~Iga-tT~~ey~~~~e~d~al~rrF~~---i~v~ep~~~~~~~iL 376 (798)
.||+||-+-|-.++.. -.-+++--....|.--++.+ ..|.|... -|.-|..||+- +.+.+|+.+..+.||
T Consensus 213 liDDiqfl~gk~~tqe---eff~~fn~l~~~~kqiv~tsd~~P~~l~~---l~~rL~SRf~~Gl~~~i~~Pd~e~r~~Il 286 (447)
T PRK00149 213 LIDDIQFLAGKEKTQE---EFFHTFNALHENNKQIVITSDRPPKELEG---LEDRLRSRFEWGLTVDIEPPDLETRVAIL 286 (447)
T ss_pred EECHHHHHHCCHHHHH---HHHHHHHHHHHCCCEEEEECCCCHHHCCC---CCHHHHHHHHCCEEEECCCCCHHHHHHHH
T ss_conf 3214888605577999---99999999998499689957889676565---11778867637626510599999999999
Q ss_pred HHHHHHHHHHCCCEECCHHHHHHHHH
Q ss_conf 86127665410351211178999998
Q gi|254780163|r 377 KGIKPYFEEHHQLRYSKEAIRAAVQL 402 (798)
Q Consensus 377 ~~~~~~ye~~h~v~~~~~al~~av~l 402 (798)
+.... .+++.+++++++..++-
T Consensus 287 ~~k~~----~~~~~l~~~v~~~iA~~ 308 (447)
T PRK00149 287 QKKAE----EEGINLPNEVLEFIAKR 308 (447)
T ss_pred HHHHH----HCCCCCCHHHHHHHHHH
T ss_conf 99999----72899998999999971
No 159
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.80 E-value=2.5e-07 Score=71.80 Aligned_cols=221 Identities=26% Similarity=0.417 Sum_probs=143.4
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC----------CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEE
Q ss_conf 588775486112221789999999986226778----------7489667641166899999999854898834520144
Q gi|254780163|r 194 LTEKVKKGKVDILVGRHEEINRTIQILCRRSKN----------NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARI 263 (798)
Q Consensus 194 LTe~AreGKLDPVIGRd~EI~riiqIL~RR~KN----------n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i 263 (798)
.++.-.+-.+|-|||.++- +|-..++.+--+| |++.-|+||.|||-.+..||. +.+|| +
T Consensus 111 ~~e~~~~it~ddViGqEeA-K~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalan---e~kvp-------~ 179 (368)
T COG1223 111 DREIISDITLDDVIGQEEA-KRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALAN---EAKVP-------L 179 (368)
T ss_pred HHHHHCCCCHHHHHCHHHH-HHHHHHHHHHHHCHHHHCCCCCCEEEEECCCCCCHHHHHHHHHC---CCCCC-------E
T ss_conf 5566136617664163988-88879999996496876345754168778999648799998725---45785-------4
Q ss_pred EEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCC-CCCCCCCCCHH---HHHHHHH----CCCCEE
Q ss_conf 554046753063431237899999998720389839997361663015-54443447778---8887663----026603
Q gi|254780163|r 264 FSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGA-GSASGISVDAS---NLLKPAL----SSGAVR 335 (798)
Q Consensus 264 ~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~liga-g~~~g~~~d~a---n~lkP~L----~rg~~~ 335 (798)
+.+..+.|+. .|.|+=-+|+..+.+-+++..+.|.||||+..|-=. +-++ --.|++ |-|..-| .+-.+-
T Consensus 180 l~vkat~liG--ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQe-lRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 180 LLVKATELIG--EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQE-LRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred EEECHHHHHH--HHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 8711688888--77435989999999988751984998400245553045788-64549999999998501744577569
Q ss_pred EEEECCHHHHHHHHHCCHHHHHHCE-EEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHH----HHHHHCCCC
Q ss_conf 8873048999998520111432001-44306878689999998612766541035121117899999----865420155
Q gi|254780163|r 336 CIGSTTYSEYRQFFEKDKALVRRFQ-KIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQ----LSVRHFTSR 410 (798)
Q Consensus 336 ~IgatT~~ey~~~~e~d~al~rrF~-~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~----ls~ryi~~r 410 (798)
.|+||..-+ --|+|...||+ -|.-.=|+.++-+.||+- |-+..-+...-. +.+.+. +|.|-|.+|
T Consensus 257 tIaaTN~p~-----~LD~aiRsRFEeEIEF~LP~~eEr~~ile~----y~k~~Plpv~~~-~~~~~~~t~g~SgRdikek 326 (368)
T COG1223 257 TIAATNRPE-----LLDPAIRSRFEEEIEFKLPNDEERLEILEY----YAKKFPLPVDAD-LRYLAAKTKGMSGRDIKEK 326 (368)
T ss_pred EEEECCCHH-----HCCHHHHHHHHHEEEEECCCHHHHHHHHHH----HHHHCCCCCCCC-HHHHHHHHCCCCCHHHHHH
T ss_conf 995059846-----507888865565065648885899999999----898589765568-9999998478772068999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 5646798899865333321144322113657899986631
Q gi|254780163|r 411 KLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIAS 450 (798)
Q Consensus 411 ~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~~ 450 (798)
.| ..| -.++..+.+..|..+|+..++.+
T Consensus 327 vl--------K~a----Lh~Ai~ed~e~v~~edie~al~k 354 (368)
T COG1223 327 VL--------KTA----LHRAIAEDREKVEREDIEKALKK 354 (368)
T ss_pred HH--------HHH----HHHHHHHCHHHHHHHHHHHHHHH
T ss_conf 99--------999----99998713444338899999986
No 160
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.80 E-value=1.6e-06 Score=65.93 Aligned_cols=127 Identities=27% Similarity=0.363 Sum_probs=73.8
Q ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEEHHHHHCCCCCCH--HC
Q ss_conf 6653458999999999877520445657874068861432003889999987304-77337720688612465301--10
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL-GVQLLRFDMSEYMERHAVSR--LI 553 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~-~~~lir~dmsey~e~~~vs~--Li 553 (798)
..|+||++++..+..++...| ---+|||+||.|||||-+|+.+|..+ ..+--.-+ -+......+ .-
T Consensus 16 ~eIIGQe~iv~~L~nAI~~~R--------iaHAYLFsGPrGvGKTTlArifAkaLnC~~~~~~d---pCg~C~sC~~I~~ 84 (613)
T PRK05896 16 KQIIGQELIKKILVNAILNNK--------LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGD---CCNSCSVCESINT 84 (613)
T ss_pred HHHCCCHHHHHHHHHHHHCCC--------CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCCCHHHHHHHC
T ss_conf 552382999999999998499--------76227755899848899999999996699999999---8888878999856
Q ss_pred CCCCH--------HCCCCCCCCCCHHHHHCC----CEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEE
Q ss_conf 47800--------025644431003555158----517774044550289999999987775021779977612542999
Q gi|254780163|r 554 GAPPG--------YVGFGQGGILADSVDQNP----YSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILI 621 (798)
Q Consensus 554 GappG--------YvG~~egg~Lte~vr~~P----~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii 621 (798)
|+-|- .-|-++--.|.+.+...| |-|.++||.+...++-+|.||..|+|- =.++++|
T Consensus 85 g~h~DviEIdaasn~gIDeIReLie~~~~~P~~gkyKV~IIDEah~Ln~~AaNALLKtLEEP-----------P~~viFI 153 (613)
T PRK05896 85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEP-----------PKHVVFI 153 (613)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHCCCC-----------CCCCEEE
T ss_conf 99998688406555788999999997085875799459998162217999999999853489-----------8783799
Q ss_pred EECC
Q ss_conf 9424
Q gi|254780163|r 622 MTTN 625 (798)
Q Consensus 622 ~TsN 625 (798)
|.|+
T Consensus 154 L~Tt 157 (613)
T PRK05896 154 FATT 157 (613)
T ss_pred EEEC
T ss_conf 9828
No 161
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.80 E-value=1.6e-06 Score=66.12 Aligned_cols=38 Identities=13% Similarity=0.381 Sum_probs=23.5
Q ss_pred HHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 4520144554046753063431237899999998720389839997
Q gi|254780163|r 257 ILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYI 302 (798)
Q Consensus 257 ~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfi 302 (798)
.-..++||-+|-.-|+... -..++++-++..+.-++||
T Consensus 115 ~~gkYKVyIIDEvHMLS~~--------AfNALLKtLEEPP~hvvFI 152 (718)
T PRK07133 115 QISKYKIYIIDEVHMLSKS--------AFNALLKTLEEPPKHVIFI 152 (718)
T ss_pred CCCCEEEEEEECCCCCCHH--------HHHHHHHHHCCCCCCCEEE
T ss_conf 7787249999662007999--------9999998502798782799
No 162
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.9e-07 Score=72.70 Aligned_cols=209 Identities=21% Similarity=0.210 Sum_probs=130.5
Q ss_pred CCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCC-----EEEEEHHHHHCC
Q ss_conf 000246653458999999999877520445657874068861432003889999987304773-----377206886124
Q gi|254780163|r 472 EKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQ-----LLRFDMSEYMER 546 (798)
Q Consensus 472 ~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~-----lir~dmsey~e~ 546 (798)
+..+..++.+-++-+.++...+.-.-. ..+|. +++..||||+|||-+++-+....+.. .+.+||-+|..+
T Consensus 12 ~~~iP~~l~~Re~ei~~l~~~l~~~~~----~~~p~-n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~ 86 (366)
T COG1474 12 EDYIPEELPHREEEINQLASFLAPALR----GERPS-NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTP 86 (366)
T ss_pred CCCCCHHCCCHHHHHHHHHHHHHHHHC----CCCCC-CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCH
T ss_conf 555822010348899999999999855----89986-0799889998732899999999973315675799951307878
Q ss_pred CCCCHHC----CCCCHHCCCCCC---CCCCHHHHH-CCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCE
Q ss_conf 6530110----478000256444---310035551-58517774044550289999999987775021779977612542
Q gi|254780163|r 547 HAVSRLI----GAPPGYVGFGQG---GILADSVDQ-NPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNV 618 (798)
Q Consensus 547 ~~vs~Li----GappGYvG~~eg---g~Lte~vr~-~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~ 618 (798)
..|...| |.+| .-|.--. ..|-+.+.. ....||.+||++.--..-.++|++++.-.. .. -.+.
T Consensus 87 ~~i~~~i~~~~~~~p-~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~---~~-----~~~v 157 (366)
T COG1474 87 YQVLSKILNKLGKVP-LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPG---EN-----KVKV 157 (366)
T ss_pred HHHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCCHHHHEECCCC---CC-----CEEE
T ss_conf 799999999826899-76763268999999977741875999976476541546414551112477---67-----5379
Q ss_pred EEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 99994242145533036898821114889999987288788177682896288999999999999999999999866988
Q gi|254780163|r 619 ILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGIS 698 (798)
Q Consensus 619 iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~ 698 (798)
++|..+|- . .-.....+.++..|.| .-|+|.|.+.+++..|+........ ..
T Consensus 158 ~vi~i~n~---------~-----~~~~~ld~rv~s~l~~-------~~I~F~pY~a~el~~Il~~R~~~~~-------~~ 209 (366)
T COG1474 158 SIIAVSND---------D-----KFLDYLDPRVKSSLGP-------SEIVFPPYTAEELYDILRERVEEGF-------SA 209 (366)
T ss_pred EEEEEECC---------H-----HHHHHHHHHHHHCCCC-------CEEEECCCCHHHHHHHHHHHHHHHH-------CC
T ss_conf 99997354---------8-----8999875667650687-------6355289898999999999998540-------46
Q ss_pred EEECHHHHHHHHHCCCCCCCCCHH
Q ss_conf 999889999999718981015326
Q gi|254780163|r 699 FHFSEEVINWLVSHGYDVKMGARP 722 (798)
Q Consensus 699 l~~~~~~~~~l~~~~~~~~~GAR~ 722 (798)
-.+++.+.++++...-...--||-
T Consensus 210 ~~~~~~vl~lia~~~a~~~GDAR~ 233 (366)
T COG1474 210 GVIDDDVLKLIAALVAAESGDARK 233 (366)
T ss_pred CCCCHHHHHHHHHHHHHCCCCHHH
T ss_conf 874803999999988761864776
No 163
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=98.79 E-value=3.8e-08 Score=77.72 Aligned_cols=220 Identities=18% Similarity=0.279 Sum_probs=145.9
Q ss_pred CHHHH--HHHCHHHHHHHHHHHHHHHHC-CCCCCCCCCCEEEEECCCCHHHHHHHHHHH---------HHCC-CCEEEEE
Q ss_conf 00246--653458999999999877520-445657874068861432003889999987---------3047-7337720
Q gi|254780163|r 473 KNLGT--VVYGQEEAIKKLSSSIKIARA-GLSDPNKPIGCYVFSGPTGVGKTEISKQLA---------FALG-VQLLRFD 539 (798)
Q Consensus 473 ~~l~~--~v~GQ~~ai~~v~~~i~~~~~-gl~~~~rP~g~flf~GptGvGKTelak~la---------~~~~-~~lir~d 539 (798)
..+-. +++|=|+=|+.++.+++-+.- | .+|.-+|+ -||||||||-.+|.+. ++.. -..+.+|
T Consensus 11 dY~Pden~i~hRdeqI~~l~~~L~~~l~PG----~~P~Ni~i-YGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~~N 85 (383)
T TIGR02928 11 DYVPDENRIVHRDEQIEELAKALRPILRPG----SRPSNIFI-YGKTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVYIN 85 (383)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCC----CCCCCEEE-ECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 770274246686789999999988750674----89872588-7888987889999999999998622699715899977
Q ss_pred HH----HHHCCCCCCH-H----CCCCCHHCCCCCC---CCCCHHHH-H-CCCEEEEECCHHHC---CHH---HHHHHHHH
Q ss_conf 68----8612465301-1----0478000256444---31003555-1-58517774044550---289---99999998
Q gi|254780163|r 540 MS----EYMERHAVSR-L----IGAPPGYVGFGQG---GILADSVD-Q-NPYSVVLLDEIEKS---HPD---VLNILLQI 599 (798)
Q Consensus 540 ms----ey~e~~~vs~-L----iGappGYvG~~eg---g~Lte~vr-~-~P~sVvl~DEiEKA---h~~---v~~~llqi 599 (798)
|- +|+---++.. | .|.-+=+-|+-.. ..|.+.+. . ...-||.||||++= +.| .-.+|+|+
T Consensus 86 C~~~~T~y~~~~~L~~~ln~~~~~~~vP~tG~s~~~~~~~l~~~l~~~~~~~~~ivLDEiD~Lv~~~~d~PAyS~~LY~L 165 (383)
T TIGR02928 86 CQILDTSYQVLVELANQLNRRGSGEEVPTTGLSTSEVFRELYKELNRERGDSLIIVLDEIDKLVRKDDDDPAYSKLLYQL 165 (383)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCCCCHHHHHHHHHH
T ss_conf 85468469999999998515778888988778789999999999832018879998623102215888880787885343
Q ss_pred HHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHH
Q ss_conf 77750217799776125429999424214553303689882111488999998728878817768289628899999999
Q gi|254780163|r 600 MDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQ 679 (798)
Q Consensus 600 ld~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~ 679 (798)
.-- .++|..=+++=+||-.|.++ .| .+.+.+.++..|.| +-|.|-|.+.++++.
T Consensus 166 ~Ra----~~~~~~~~~~vgvIgISND~----------~f-----~~~Ld~RVkSsL~~-------eei~FpPYdA~eL~~ 219 (383)
T TIGR02928 166 SRA----RENGDLENAKVGVIGISNDL----------KF-----RENLDPRVKSSLCE-------EEIVFPPYDAEELRD 219 (383)
T ss_pred HHH----HHCCCCCCCCEEEEEEECCC----------HH-----HHHCCCCEECCCCC-------CCCEECCCCHHHHHH
T ss_conf 310----00357788534899986571----------43-----64457530132487-------400407988699999
Q ss_pred HHHHHH-HH-HHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 999999-99-99999866988999889999999718981015326799999862
Q gi|254780163|r 680 VVHKFI-MK-LELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHV 731 (798)
Q Consensus 680 i~~~~l-~~-l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i 731 (798)
|+.... +. +. -| .++|+|+...|..+=...--||--=++++.-.
T Consensus 220 IL~~R~v~~AF~-----dG---vl~d~VI~lcAA~aAq~hGDAR~AiDLLR~AG 265 (383)
T TIGR02928 220 ILENRAVEKAFY-----DG---VLDDGVIPLCAALAAQEHGDARKAIDLLRVAG 265 (383)
T ss_pred HHHHHHHHHCCC-----CC---CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 997203120336-----88---54622799999986206787899999999876
No 164
>KOG0739 consensus
Probab=98.79 E-value=7.8e-08 Score=75.45 Aligned_cols=133 Identities=27% Similarity=0.479 Sum_probs=100.1
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 78748966764116689999999985489883452014455404675306343123789999999872038983999736
Q gi|254780163|r 225 KNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDE 304 (798)
Q Consensus 225 KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfide 304 (798)
=...+|-|+||.||+-++..+|.. .|..+|+++-.-|++ |+-||-|.-++++++-++.+++.|+||||
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATE----------AnSTFFSvSSSDLvS--KWmGESEkLVknLFemARe~kPSIIFiDE 233 (439)
T KOG0739 166 WRGILLYGPPGTGKSYLAKAVATE----------ANSTFFSVSSSDLVS--KWMGESEKLVKNLFEMARENKPSIIFIDE 233 (439)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH----------CCCCEEEEEHHHHHH--HHHCCHHHHHHHHHHHHHHCCCCEEEEEH
T ss_conf 425788679997577999998741----------477068730178899--87321799999999998734994798634
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHCCHHHHHHCEE-EEECCCCHHHHHH
Q ss_conf 16630155444344777888876630---------2660388730489999985201114320014-4306878689999
Q gi|254780163|r 305 IHTLVGAGSASGISVDASNLLKPALS---------SGAVRCIGSTTYSEYRQFFEKDKALVRRFQK-IDVSEPSIEDAIE 374 (798)
Q Consensus 305 ih~ligag~~~g~~~d~an~lkP~L~---------rg~~~~IgatT~~ey~~~~e~d~al~rrF~~-i~v~ep~~~~~~~ 374 (798)
|..+-|+++... -+++.-+|.-+- ...+-+.|||..- | --|.|+.|||++ |.|+=|....-..
T Consensus 234 iDslcg~r~enE--seasRRIKTEfLVQMqGVG~d~~gvLVLgATNiP-w----~LDsAIRRRFekRIYIPLPe~~AR~~ 306 (439)
T KOG0739 234 IDSLCGSRSENE--SEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIP-W----VLDSAIRRRFEKRIYIPLPEAHARAR 306 (439)
T ss_pred HHHHCCCCCCCC--HHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC-H----HHHHHHHHHHHCCEECCCCCHHHHHH
T ss_conf 444326887771--1777777778887640666588864897237884-3----67799998765023010873787655
Q ss_pred HH
Q ss_conf 99
Q gi|254780163|r 375 IV 376 (798)
Q Consensus 375 iL 376 (798)
|.
T Consensus 307 MF 308 (439)
T KOG0739 307 MF 308 (439)
T ss_pred HH
T ss_conf 50
No 165
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=98.79 E-value=6.2e-07 Score=69.01 Aligned_cols=104 Identities=21% Similarity=0.333 Sum_probs=79.7
Q ss_pred EEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCH
Q ss_conf 17774044550289999999987775021779977612542999942421455330368988211148899999872887
Q gi|254780163|r 578 SVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSP 657 (798)
Q Consensus 578 sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~p 657 (798)
.|++.||+.=-+.+.|..|-..|+.- | --||||.||=|-..+... +...+ .-.+.
T Consensus 277 GVLFIDEvHMLDiEcFsfLnralEs~-----------l-aPivI~ATNRG~~~IRGT----d~~sP---------HGiP~ 331 (395)
T pfam06068 277 GVLFIDEVHMLDIECFSFLNRALESE-----------L-APIVILATNRGICTIRGT----DIISP---------HGIPL 331 (395)
T ss_pred CCEEEECCHHCCHHHHHHHHHHHCCC-----------C-CCEEEEEECCCCEEECCC----CCCCC---------CCCCH
T ss_conf 74688500000058998887765056-----------7-876999844652035256----77588---------89987
Q ss_pred HHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCC
Q ss_conf 88177682896288999999999999999999999866988999889999999718981
Q gi|254780163|r 658 EFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDV 716 (798)
Q Consensus 658 eflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~ 716 (798)
.||.|+ -||.-.|++.+++.+|+.....+ -.+.++++++++|++-|...
T Consensus 332 DlLDRl-lII~T~py~~~ei~~Ii~iRa~~---------E~v~l~~~al~~L~~ig~~~ 380 (395)
T pfam06068 332 DLLDRL-LIITTEPYTREEIKQILEIRAQE---------EGVEISEEALDLLAKIGEET 380 (395)
T ss_pred HHHHHE-EEEECCCCCHHHHHHHHHHHHHH---------HCCCCCHHHHHHHHHHHHHC
T ss_conf 777302-58856889989999999987776---------07877989999999865320
No 166
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.78 E-value=5.8e-07 Score=69.21 Aligned_cols=157 Identities=18% Similarity=0.373 Sum_probs=100.2
Q ss_pred EEEECCCCHHHHHHHHHHHH---HCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHH
Q ss_conf 88614320038899999873---047733772068861246530110478000256444310035551585177740445
Q gi|254780163|r 510 YVFSGPTGVGKTEISKQLAF---ALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIE 586 (798)
Q Consensus 510 flf~GptGvGKTelak~la~---~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiE 586 (798)
+.+.||+|+|||.|+.+.+. ....+.+.++|.++..... .-+ +.+ +.+.++++|+|+
T Consensus 41 l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~~~~~~~-~~l-----------------~~l--~~~d~l~iDDi~ 100 (226)
T TIGR03420 41 LYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADP-EVL-----------------EGL--EQADLVCLDDVE 100 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHH-HHH-----------------HHC--CCCCEEEEECHH
T ss_conf 999899999889999999999862699579952999877539-999-----------------727--448999996633
Q ss_pred HC--CHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCC-
Q ss_conf 50--289999999987775021779977612542999942421455330368988211148899999872887881776-
Q gi|254780163|r 587 KS--HPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRL- 663 (798)
Q Consensus 587 KA--h~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRi- 663 (798)
.- .++....|..++. .+.++ ++-|++||+.....+ +++-|.+..|+
T Consensus 101 ~i~~~~~~e~~lF~l~N--~~~~~--------~~~ilits~~~p~~l---------------------~~~l~dL~SRl~ 149 (226)
T TIGR03420 101 AIAGQPEWQEALFHLYN--RVREA--------GGRLLIAGRAAPAQL---------------------PLRLPDLRTRLA 149 (226)
T ss_pred HHCCCHHHHHHHHHHHH--HHHHH--------CCEEEEECCCCHHHC---------------------CCCHHHHHHHHH
T ss_conf 34378378999999999--99865--------282898678882320---------------------320177999996
Q ss_pred -CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf -828962889999999999999999999998669889998899999997189810153267999998
Q gi|254780163|r 664 -DSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKE 729 (798)
Q Consensus 664 -d~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~ 729 (798)
--++-..+++.+.+..|+.+.. .++|+ .+++++++||+++... .+ |.+..++.+
T Consensus 150 ~~~~~~I~~pdd~~~~~iL~k~~-------~~r~i--~i~~~vi~yl~~r~~R-~~--~~l~~~l~~ 204 (226)
T TIGR03420 150 WGLVFQLPPLSDEEKIAALQSRA-------ARRGL--QLPDEVADYLLRHGSR-DM--GSLMALLDA 204 (226)
T ss_pred CCCEEECCCCCHHHHHHHHHHHH-------HHCCC--CCCHHHHHHHHHHCCC-CH--HHHHHHHHH
T ss_conf 88568527999999999999999-------98599--8899999999986379-89--999999999
No 167
>pfam00493 MCM MCM2/3/5 family.
Probab=98.77 E-value=7e-07 Score=68.60 Aligned_cols=221 Identities=17% Similarity=0.239 Sum_probs=129.1
Q ss_pred HHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCC----CCC--CCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 334210000246653458999999999877520445----657--87406886143200388999998730477337720
Q gi|254780163|r 466 SVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLS----DPN--KPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFD 539 (798)
Q Consensus 466 ~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~----~~~--rP~g~flf~GptGvGKTelak~la~~~~~~lir~d 539 (798)
+.+..|-+.+--.|+|.+..-.++.-.+.- |-. +.. |---..|++|-+|+|||.|.|..+.....+...-.
T Consensus 13 ~~~~~l~~siaP~i~G~~~vK~ai~l~l~g---g~~~~~~~~~~~Rg~ihiLLvGdPG~gKSqlLk~~~~~~pr~~~tsg 89 (327)
T pfam00493 13 DIYDKLARSIAPSIYGHEDVKKAILLQLFG---GVKKNLPDGTRLRGDINVLLVGDPGTAKSQLLKYVAKLAPRAVYTSG 89 (327)
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHHCC---CCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECC
T ss_conf 399999998597124987999999999808---98765888862036511898469981560999999986887088317
Q ss_pred HHHHHCCCCCCHHCCCC---CHHCCCC-CCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCC-CCEEC
Q ss_conf 68861246530110478---0002564-4431003555158517774044550289999999987775021779-97761
Q gi|254780163|r 540 MSEYMERHAVSRLIGAP---PGYVGFG-QGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQS-GKKIS 614 (798)
Q Consensus 540 msey~e~~~vs~LiGap---pGYvG~~-egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~-Gr~vd 614 (798)
++ .|..-|.++- |.-=+|- |+|-|.-+ --.|++.|||+|+.+.....|++.|++++++=++ |-+..
T Consensus 90 ~~-----ss~~GLTa~~~~d~~~~~~~leaGalvlA----d~Gv~cIDEfdk~~~~d~saL~EAMEqqtVsIaKaGi~~t 160 (327)
T pfam00493 90 KG-----SSAAGLTAAVVRDPDTGEWTLEAGALVLA----DGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGIVAT 160 (327)
T ss_pred CC-----CCCCCCEEEEEEECCCCCEEEECCCEEEC----CCCEEEEECCCCCCHHHHHHHHHHHHHCEEEEECCCEEEE
T ss_conf 76-----65677615899806888369836847755----8982785005558876799999999868177633853897
Q ss_pred CC-CEEEEEECCCCHHHHHHCCCC-CCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECC-CCCHHHHHHHHHHHHH-----
Q ss_conf 25-429999424214553303689-882111488999998728878817768289628-8999999999999999-----
Q gi|254780163|r 615 FR-NVILIMTTNAGALEMSKARIG-FGSSRNDDADKEALRNFLSPEFLNRLDSIIPFF-PLSSDIIRQVVHKFIM----- 686 (798)
Q Consensus 615 f~-n~iii~TsN~G~~~~~~~~~g-~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~-~l~~~~~~~i~~~~l~----- 686 (798)
+. .|.||.|.|- ..| |+.. ....+- -.++|.++.|+|-|++.. .-+.+.=..|++..+.
T Consensus 161 L~ar~sVlAaaNP--------~~g~yd~~---~~~~~n--i~Lp~~lLsRFDLif~l~D~~~~~~D~~ia~~i~~~~~~~ 227 (327)
T pfam00493 161 LNARCSVLAAANP--------IFGRYDPK---KSVAEN--INLPPPLLSRFDLIFVLLDKPDEEKDEELAKHIVDLHRHG 227 (327)
T ss_pred ECCCCEEEEEECC--------CCCCCCCC---CCHHHH--CCCCHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCC
T ss_conf 2587179985277--------67737888---898885--5897677450107988406898688999999999987446
Q ss_pred --------------HHHH--HHHHCCCEEEECHHHHHHHHH
Q ss_conf --------------9999--998669889998899999997
Q gi|254780163|r 687 --------------KLEL--QLQEKGISFHFSEEVINWLVS 711 (798)
Q Consensus 687 --------------~l~~--~l~~~~i~l~~~~~~~~~l~~ 711 (798)
.+.+ .++++.+.-.+++++.++|..
T Consensus 228 ~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~ea~~~i~~ 268 (327)
T pfam00493 228 EEEEIETEDYVDPELLRKYIAYARENIFPKLSDEAREKLVN 268 (327)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 88655568879999999999999852788779899999999
No 168
>KOG0737 consensus
Probab=98.76 E-value=7.7e-07 Score=68.29 Aligned_cols=137 Identities=28% Similarity=0.511 Sum_probs=104.3
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCH
Q ss_conf 87489667641166899999999854898834520144554046753063431237899999998720389839997361
Q gi|254780163|r 226 NNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEI 305 (798)
Q Consensus 226 Nn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfidei 305 (798)
.+++|-|+||.|||-++..+|.+ .+...+.++++.+.. |.-||=|.-++.+..-+.+-.+.|+||||+
T Consensus 128 kGiLL~GPpG~GKTmlAKA~Ake----------aga~fInv~~s~lt~--KWfgE~eKlv~AvFslAsKl~P~iIFIDEv 195 (386)
T KOG0737 128 KGILLYGPPGTGKTMLAKAIAKE----------AGANFINVSVSNLTS--KWFGEAQKLVKAVFSLASKLQPSIIFIDEV 195 (386)
T ss_pred CCCEECCCCCCHHHHHHHHHHHH----------CCCCCCEEECCCCCH--HHHHHHHHHHHHHHHHHHHCCCCEEEHHHH
T ss_conf 43051189982188999999987----------279710001365532--667778889999982065348615656658
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHH--------HCCCC--EEEEEECCHHHHHHHHHCCHHHHHHC-EEEEECCCCHHHHHH
Q ss_conf 66301554443447778888766--------30266--03887304899999852011143200-144306878689999
Q gi|254780163|r 306 HTLVGAGSASGISVDASNLLKPA--------LSSGA--VRCIGSTTYSEYRQFFEKDKALVRRF-QKIDVSEPSIEDAIE 374 (798)
Q Consensus 306 h~ligag~~~g~~~d~an~lkP~--------L~rg~--~~~IgatT~~ey~~~~e~d~al~rrF-~~i~v~ep~~~~~~~ 374 (798)
-+..|.-+++. -.|--++|-- .+.+. +=+.|||.- -++-|.|.-||| +..+|.-|+.++-.+
T Consensus 196 ds~L~~R~s~d--HEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNR-----P~DlDeAiiRR~p~rf~V~lP~~~qR~k 268 (386)
T KOG0737 196 DSFLGQRRSTD--HEATAMMKNEFMALWDGLSSKDSERVLVLGATNR-----PFDLDEAIIRRLPRRFHVGLPDAEQRRK 268 (386)
T ss_pred HHHHHHCCCCH--HHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC-----CCCHHHHHHHHCCCEEEECCCCHHHHHH
T ss_conf 88986404642--7999999999999861646788715999707999-----8437899998476436537984444999
Q ss_pred HHHHHHH
Q ss_conf 9986127
Q gi|254780163|r 375 IVKGIKP 381 (798)
Q Consensus 375 iL~~~~~ 381 (798)
||+-+..
T Consensus 269 ILkviLk 275 (386)
T KOG0737 269 ILKVILK 275 (386)
T ss_pred HHHHHHC
T ss_conf 9999942
No 169
>KOG0733 consensus
Probab=98.76 E-value=7.5e-08 Score=75.56 Aligned_cols=137 Identities=30% Similarity=0.478 Sum_probs=57.1
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 78748966764116689999999985489883452014455404675306343123789999999872038983999736
Q gi|254780163|r 225 KNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDE 304 (798)
Q Consensus 225 KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfide 304 (798)
-..++|-|+||-|||-++...|.- .+.-++++-..-|+ -+|.||-|.-++.++-.++.+.+.|.|+||
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANE----------ag~NFisVKGPELl--NkYVGESErAVR~vFqRAR~saPCVIFFDE 612 (802)
T KOG0733 545 PSGVLLCGPPGCGKTLLAKAVANE----------AGANFISVKGPELL--NKYVGESERAVRQVFQRARASAPCVIFFDE 612 (802)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH----------CCCCEEEECCHHHH--HHHHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 872387579986188999998503----------04754762388999--877423789999999986238983898511
Q ss_pred HHHHHC---CCCCCCCCCCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHCCHHHHH--HCEE-EEECCCCHHHHHH
Q ss_conf 166301---5544434477788887663----0266038873048999998520111432--0014-4306878689999
Q gi|254780163|r 305 IHTLVG---AGSASGISVDASNLLKPAL----SSGAVRCIGSTTYSEYRQFFEKDKALVR--RFQK-IDVSEPSIEDAIE 374 (798)
Q Consensus 305 ih~lig---ag~~~g~~~d~an~lkP~L----~rg~~~~IgatT~~ey~~~~e~d~al~r--rF~~-i~v~ep~~~~~~~ 374 (798)
+..|+- -+.++. +--+-|-|.--| .|-.+-+||||.--. --|+|+-| ||.+ ..|.-|+.++-..
T Consensus 613 iDaL~p~R~~~~s~~-s~RvvNqLLtElDGl~~R~gV~viaATNRPD-----iIDpAiLRPGRlDk~LyV~lPn~~eR~~ 686 (802)
T KOG0733 613 IDALVPRRSDEGSSV-SSRVVNQLLTELDGLEERRGVYVIAATNRPD-----IIDPAILRPGRLDKLLYVGLPNAEERVA 686 (802)
T ss_pred HHHCCCCCCCCCCHH-HHHHHHHHHHHHCCCCCCCCEEEEEECCCCC-----CCCHHHCCCCCCCCEEEECCCCHHHHHH
T ss_conf 120276557777505-8999999998731621114259995068976-----5556551877557424506998788999
Q ss_pred HHHHH
Q ss_conf 99861
Q gi|254780163|r 375 IVKGI 379 (798)
Q Consensus 375 iL~~~ 379 (798)
||+.+
T Consensus 687 ILK~~ 691 (802)
T KOG0733 687 ILKTI 691 (802)
T ss_pred HHHHH
T ss_conf 99998
No 170
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=98.75 E-value=5.3e-08 Score=76.68 Aligned_cols=124 Identities=30% Similarity=0.561 Sum_probs=92.8
Q ss_pred HHHHCHHHHHHHHHHHHH--------HHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCC
Q ss_conf 665345899999999987--------752044565787406886143200388999998730477337720688612465
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIK--------IARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHA 548 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~--------~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~ 548 (798)
+.|=|=++-+..|-+++. -...|+.+|. |++|+ ||+|+|||-|||++|...+--|||+=-|||-.+
T Consensus 122 ~diGGL~~Q~~E~~E~v~LPlk~PeLF~~vGI~PPK---GvLLy-GPPGtGKTLlAKAvA~et~ATFIrvVgSElV~K-- 195 (364)
T TIGR01242 122 EDIGGLEKQIREIREAVELPLKKPELFEEVGIEPPK---GVLLY-GPPGTGKTLLAKAVAHETNATFIRVVGSELVRK-- 195 (364)
T ss_pred ECCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCC---CEEEE-CCCCCCHHHHHHHHHCCCCCEEEEEEHHHHHHH--
T ss_conf 026787899999988873468883167762889898---65700-757976889999863145512688604444444--
Q ss_pred CCHHCCCCCHHCCCCCCCCCCHHH-----HHCCCEEEEECCHHH-----------CCHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 301104780002564443100355-----515851777404455-----------0289999999987775021779977
Q gi|254780163|r 549 VSRLIGAPPGYVGFGQGGILADSV-----DQNPYSVVLLDEIEK-----------SHPDVLNILLQIMDYGILTDQSGKK 612 (798)
Q Consensus 549 vs~LiGappGYvG~~egg~Lte~v-----r~~P~sVvl~DEiEK-----------Ah~~v~~~llqild~G~ltd~~Gr~ 612 (798)
|+| ||-.|..-| -+.| |+|+.|||+- ..++|+..|+|+|-|=-=-|..|
T Consensus 196 ----------yIG--EGArLV~~~F~LAkEKaP-sIiFIDEiDAiaakR~~~~TsGdREV~RTlmQLLAElDGFd~rg-- 260 (364)
T TIGR01242 196 ----------YIG--EGARLVREVFELAKEKAP-SIIFIDEIDAIAAKRVDSSTSGDREVQRTLMQLLAELDGFDPRG-- 260 (364)
T ss_pred ----------HHC--CHHHHHHHHHHHHHCCCC-CEEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCC--
T ss_conf ----------413--316899999998530698-16861013335432114677873157889999997524888767--
Q ss_pred ECCCCEEEEEECC
Q ss_conf 6125429999424
Q gi|254780163|r 613 ISFRNVILIMTTN 625 (798)
Q Consensus 613 vdf~n~iii~TsN 625 (798)
|.-||-.+|
T Consensus 261 ----~VkviaATN 269 (364)
T TIGR01242 261 ----NVKVIAATN 269 (364)
T ss_pred ----CEEEEEECC
T ss_conf ----616887207
No 171
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.75 E-value=5.4e-07 Score=69.42 Aligned_cols=148 Identities=30% Similarity=0.485 Sum_probs=101.5
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCC------CCCCHHHHHCCC
Q ss_conf 78740688614320038899999873047733772068861246530110478000256444------310035551585
Q gi|254780163|r 504 NKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQG------GILADSVDQNPY 577 (798)
Q Consensus 504 ~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~eg------g~Lte~vr~~P~ 577 (798)
+=| .|.-|||..|||-+-+-||...+..++|||--|-+ ...--||+ ||--+.| |.|.||+|+ .|
T Consensus 888 ~fP---~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHT---dlqeYiGT---yvTdd~G~lsFkEGvLVeAlR~-Gy 957 (4600)
T COG5271 888 NFP---LLIQGPTSSGKTSMILYLARETGHKFVRINNHEHT---DLQEYIGT---YVTDDDGSLSFKEGVLVEALRR-GY 957 (4600)
T ss_pred CCC---EEEECCCCCCCCHHHHHHHHHHCCCEEEECCCCCC---HHHHHHHC---EEECCCCCEEEEHHHHHHHHHC-CC
T ss_conf 786---79866888770049999998737607986585543---49987430---3506898565401078998856-86
Q ss_pred EEEEECCHHHCCHHHHHHHHHHHHHHH---CCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 177740445502899999999877750---21779977612542999942421455330368988211148899999872
Q gi|254780163|r 578 SVVLLDEIEKSHPDVLNILLQIMDYGI---LTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNF 654 (798)
Q Consensus 578 sVvl~DEiEKAh~~v~~~llqild~G~---ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~ 654 (798)
. |.+||.--|-.||+..|=.+||+-| +-.-+--.+---|-.++.|-| +..|++. |++
T Consensus 958 W-IVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQN--------ppg~YgG-----------RK~ 1017 (4600)
T COG5271 958 W-IVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQN--------PPGGYGG-----------RKG 1017 (4600)
T ss_pred E-EEEECCCCCCHHHHHHHHHHHCCCCCEECCCCCEEECCCCCEEEEEECC--------CCCCCCC-----------HHH
T ss_conf 7-9961024670779999998644664020677552433588736886138--------9865341-----------277
Q ss_pred CCHHHHCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 8878817768289628899999999999
Q gi|254780163|r 655 LSPEFLNRLDSIIPFFPLSSDIIRQVVH 682 (798)
Q Consensus 655 f~peflnRid~ii~F~~l~~~~~~~i~~ 682 (798)
.+-.|.||+=+ +.|....++++..|+.
T Consensus 1018 LSrAFRNRFlE-~hFddipedEle~ILh 1044 (4600)
T COG5271 1018 LSRAFRNRFLE-MHFDDIPEDELEEILH 1044 (4600)
T ss_pred HHHHHHHHHHH-HHCCCCCHHHHHHHHH
T ss_conf 77999865676-4213585789999996
No 172
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.75 E-value=3.9e-07 Score=70.43 Aligned_cols=171 Identities=19% Similarity=0.345 Sum_probs=108.0
Q ss_pred HHHHHHHHHH-HHHHHHCCC------CCCEEEE-CCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHH----HC
Q ss_conf 2217899999-999862267------7874896-6764116689999999985489883452014455404675----30
Q gi|254780163|r 206 LVGRHEEINR-TIQILCRRS------KNNPLYV-GDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNL----IA 273 (798)
Q Consensus 206 VIGRd~EI~r-iiqIL~RR~------KNn~~lv-G~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l----~a 273 (798)
|+|...++-. ..+-.++.- .-||+.| |++|+|||.+.++++..+.+ | +++|+-+....+ +.
T Consensus 114 VvG~~N~lA~~aa~~va~~~~~~~g~~yNPLfIyG~~GlGKTHLL~AIgn~i~~---~----~~kV~Yvtae~F~~~~v~ 186 (455)
T PRK12422 114 LVTPENDLPFRILQEFAKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVSALRE---S----GGKILYVSSELFTEHLVS 186 (455)
T ss_pred EECCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHC---C----CCEEEEECHHHHHHHHHH
T ss_conf 315860999999999983755358876787588789999789999999998537---9----986999749999999999
Q ss_pred CCCC--CCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHH
Q ss_conf 6343--123789999999872038983999736166301554443447778888766302660388730-4899999852
Q gi|254780163|r 274 GTRY--RGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGST-TYSEYRQFFE 350 (798)
Q Consensus 274 g~~~--rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~Igat-T~~ey~~~~e 350 (798)
..+- -.+|-++ .+ +- -+|.||+||-+-|-.++.. -.-+++--...+|.-=+|.+. .|.|....
T Consensus 187 ai~~~~~~~Fr~~-------yr-~~-DvLLIDDIQfl~gK~~tqe---Eff~tfN~L~~~~KQIVitsDr~P~el~~l-- 252 (455)
T PRK12422 187 AIRSGEMQRFRSF-------YR-NV-DALFIEDIEVFSGKGATQE---EFFHTFNSLHTEGKLIVISSSYAPGDLKAM-- 252 (455)
T ss_pred HHHCCCHHHHHHH-------HH-CC-CEEEEEHHHHHHCCHHHHH---HHHHHHHHHHHCCCEEEEECCCCHHHHHHH--
T ss_conf 9975889999999-------96-38-8776314788728488999---999999999985996999689895765126--
Q ss_pred CCHHHHHHCEE---EEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHH
Q ss_conf 01114320014---43068786899999986127665410351211178999998
Q gi|254780163|r 351 KDKALVRRFQK---IDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQL 402 (798)
Q Consensus 351 ~d~al~rrF~~---i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~l 402 (798)
+.-|..||+- +.|.+|+.|.-+.||+... ..+++.+++++++..+.-
T Consensus 253 -~~RL~SRf~~GL~v~I~~Pd~etr~~Il~~k~----~~~~~~l~~ev~~~iA~~ 302 (455)
T PRK12422 253 -EERLISRFEWGIAIPIHPLTREGLRSFLMRQA----EQLSIRIEETALDFLIQA 302 (455)
T ss_pred -HHHHHHHHHCCEEECCCCCCHHHHHHHHHHHH----HHCCCCCCHHHHHHHHHH
T ss_conf -89999886376132168999899999999999----871888844689999999
No 173
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.74 E-value=1.2e-06 Score=66.83 Aligned_cols=178 Identities=24% Similarity=0.418 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHCCCC-CC-----EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHH-----HCC
Q ss_conf 22178999999998622677-87-----48966764116689999999985489883452014455404675-----306
Q gi|254780163|r 206 LVGRHEEINRTIQILCRRSK-NN-----PLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNL-----IAG 274 (798)
Q Consensus 206 VIGRd~EI~riiqIL~RR~K-Nn-----~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l-----~ag 274 (798)
=.|=++-=+|+++-|+=|.. ++ -||||+||||||+|....|.-+ |...+.+++|.+ +-|
T Consensus 324 HyGL~~vKeRile~lAv~~~~~~~kg~IlclvGpPGvGKTSl~~sIA~al----------~r~f~rislGGv~DeaeirG 393 (784)
T PRK10787 324 HYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT----------GRKYVRMALGGVRDEAEIRG 393 (784)
T ss_pred HCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH----------CCCEEEEECCCCCCHHHHCC
T ss_conf 30657799999999999986246778779964699877246999999985----------89869980688788888256
Q ss_pred C--CCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHC-----------------CCCEE
Q ss_conf 3--4312378999999987203898399973616630155444344777888876630-----------------26603
Q gi|254780163|r 275 T--RYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALS-----------------SGAVR 335 (798)
Q Consensus 275 ~--~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~-----------------rg~~~ 335 (798)
- .|-|-.-.|+-.-|..+.. .|.+..+|||.-+ |.+ -.| |-|.-|--.|- -..+-
T Consensus 394 HrrTYvgampGrii~~l~~a~~-~nPv~llDEiDK~-~~~-~~G---dp~salLEvLDpeQN~~F~Dhyl~~~~DlS~v~ 467 (784)
T PRK10787 394 HRRTYIGSMPGKLIQKMAKVGV-KNPLFLLDEIDKM-SSD-MRG---DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred CCCCCCCCCCHHHHHHHHHHCC-CCCEEEEHHHHHH-CCC-CCC---CHHHHHHHHCCHHHCCCCCCCEEECCCCHHHEE
T ss_conf 4334344368389999997489-8856650035552-245-589---988999984597655640003220464522258
Q ss_pred EEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHH-HHHHHHHHC-----CCEECCHHHHHHHHHHHH
Q ss_conf 8873048999998520111432001443068786899999986-127665410-----351211178999998654
Q gi|254780163|r 336 CIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKG-IKPYFEEHH-----QLRYSKEAIRAAVQLSVR 405 (798)
Q Consensus 336 ~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~-~~~~ye~~h-----~v~~~~~al~~av~ls~r 405 (798)
+|+ |-.. +.--++|-.|.+.|.+.--+.++-+.|-+. +.++--..| .+.|+++|+...++--.|
T Consensus 468 Fi~--TaN~----~~ip~pLlDRmE~i~~~gYt~~eK~~Ia~~~l~p~~~~~~gl~~~~~~~~~~~~~~ii~~ytr 537 (784)
T PRK10787 468 FVA--TSNS----MNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTR 537 (784)
T ss_pred EEE--ECCC----CCCCHHHHHHEEEEEECCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 997--3276----778767763121554116767889999997453999998289965674399999998753365
No 174
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.73 E-value=1.3e-06 Score=66.72 Aligned_cols=232 Identities=20% Similarity=0.305 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHHH-CCCCCCEEEECCCCCHHHHHHHHHHHHHHC-----C---------CCCHHH---------HEE
Q ss_conf 2217899999999862-267787489667641166899999999854-----8---------988345---------201
Q gi|254780163|r 206 LVGRHEEINRTIQILC-RRSKNNPLYVGDPGVGKTAIAEGFAKQIVD-----G---------MVPDIL---------LGA 261 (798)
Q Consensus 206 VIGRd~EI~riiqIL~-RR~KNn~~lvG~~gvGktaive~la~~i~~-----~---------~vp~~l---------~~~ 261 (798)
|+|- ++.++-+.+.. --.-.|.++.|+||.|||.++.+|+..+-. + ..|+.. +..
T Consensus 10 IvGQ-e~~K~AL~laav~p~~ggvLi~G~~GtgKStlaR~l~~iLP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (334)
T PRK13407 10 IVGQ-EEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAEVSSTTMVERPT 88 (334)
T ss_pred HCCC-HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCC
T ss_conf 6493-999999999772789860899789986599999999972899511036755667742113343114555344899
Q ss_pred EEE-------------EEEHH-HHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 445-------------54046-7530634312378999999987203898399973616630155444344777888876
Q gi|254780163|r 262 RIF-------------SLDMG-NLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKP 327 (798)
Q Consensus 262 ~i~-------------~ld~~-~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP 327 (798)
.++ ++|+. +|..|.+ .|+- -++..+-+=|||+||+.-+ .-..-++|.-
T Consensus 89 p~v~lPl~atedr~~G~ldie~al~~G~~---~~~P------GlLa~Ah~GVLylDEinll---------~~~vld~Ll~ 150 (334)
T PRK13407 89 PVIDLPLGATEDRVVGALDIERALTRGEK---AFEP------GLLARANRGYLYIDEVNLL---------EDHIVDLLLD 150 (334)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHCCCC---CCCC------CHHHHCCCCEEEEECHHHC---------CHHHHHHHHH
T ss_conf 87678999998664474218888626987---7886------0543402886787205333---------3889999998
Q ss_pred HHCCCC---------------EEEEEECCHHHHHHHHHCCHHHHHHCE-EEEECCC-CHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 630266---------------038873048999998520111432001-4430687-86899999986127665410351
Q gi|254780163|r 328 ALSSGA---------------VRCIGSTTYSEYRQFFEKDKALVRRFQ-KIDVSEP-SIEDAIEIVKGIKPYFEEHHQLR 390 (798)
Q Consensus 328 ~L~rg~---------------~~~IgatT~~ey~~~~e~d~al~rrF~-~i~v~ep-~~~~~~~iL~~~~~~ye~~h~v~ 390 (798)
+++.|+ +.+||+..|+|- +--+.|-.||- .|.|..| +.++-++|++. +..|+..+...
T Consensus 151 ~~e~G~~~IeReg~s~~~ParF~LVatmNPeEg----~Lrp~lLDRf~l~v~v~~~~~~~~r~eiv~r-~~~~~~~~~~~ 225 (334)
T PRK13407 151 VAQSGENVVEREGLSIRHPARFVLVGSGNPEEG----ELRPQLLDRFGLSVEVRSPRDVETRVEVITR-RDAYDADHDAF 225 (334)
T ss_pred HHHCCCEEEEECCEEEECCCCCEEEEEECCCCC----CCCHHHHHHHCEEEEECCCCCHHHHHHHHHH-HHHHHHCHHHH
T ss_conf 871695799977634603662658982088877----7598998361006871487887776688999-99865387999
Q ss_pred E-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH---------------HHHHHHHHHCCCCHHHHHHHH--
Q ss_conf 2-----111789999986542015556467988998653333---------------211443221136578999866--
Q gi|254780163|r 391 Y-----SKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEAGASQ---------------ILQPLSKRRKFITEKDIKKTI-- 448 (798)
Q Consensus 391 ~-----~~~al~~av~ls~ryi~~r~lPdkAidllDea~a~~---------------~~~~~~~~~~~~~~~~i~~~~-- 448 (798)
. .+..+..-+..+...++.-..||..+..+=+.|... +..+.-..+..|+.+||..++
T Consensus 226 ~~~~~~e~~~l~~~i~~Ar~~l~~v~~~d~~~~~~~~~~~~~~~~g~Ra~i~l~r~ARa~AaL~Gr~~V~~~dl~~aa~l 305 (334)
T PRK13407 226 MAKWGAEDMQLRGRILGARAALPQLKTPDTVLHDCAALCIALGSDGLRGELTLLRAARAQAAFEGAETVGRSHLRSVATS 305 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 99889899999999999987511468999999999999998589871099999999999999749997899999999998
Q ss_pred --HHCCCCCCHHHHH
Q ss_conf --3102453101110
Q gi|254780163|r 449 --ASMNRSIHTTSFS 461 (798)
Q Consensus 449 --~~~~~gip~~~~~ 461 (798)
..+..--|.....
T Consensus 306 vL~HRlRr~P~e~~~ 320 (334)
T PRK13407 306 ALSHRLRRDPLDEAG 320 (334)
T ss_pred HCCCCCCCCCCCCCC
T ss_conf 533124589865578
No 175
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.73 E-value=2.5e-08 Score=79.04 Aligned_cols=116 Identities=23% Similarity=0.222 Sum_probs=78.1
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCC---CEEEEEHHHHHCCCCCCH----HCCCCCHHCCCCCCCCCCHHHHHCCCEEE
Q ss_conf 06886143200388999998730477---337720688612465301----10478000256444310035551585177
Q gi|254780163|r 508 GCYVFSGPTGVGKTEISKQLAFALGV---QLLRFDMSEYMERHAVSR----LIGAPPGYVGFGQGGILADSVDQNPYSVV 580 (798)
Q Consensus 508 g~flf~GptGvGKTelak~la~~~~~---~lir~dmsey~e~~~vs~----LiGappGYvG~~egg~Lte~vr~~P~sVv 580 (798)
...++.||+|+|||.+++.+|..... .++.++++.+.+...... .-...+.+.+...-..+.+.+++.+++|+
T Consensus 3 ~~ill~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 78999999970299999999987266899689987599898889876530001122105199999999999984499899
Q ss_pred EECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCC
Q ss_conf 7404455028999999998777502177997761254299994242
Q gi|254780163|r 581 LLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNA 626 (798)
Q Consensus 581 l~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~ 626 (798)
++||+++..+............ ...........++.+|+|+|.
T Consensus 83 iiDei~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~vi~~~n~ 125 (148)
T smart00382 83 ILDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred EEECCHHHCCCCCHHHHHHHHH---HHHHCCCCCCCCEEEEEEECC
T ss_conf 9827502147620799999999---998517657899899995699
No 176
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=98.72 E-value=3.6e-07 Score=70.71 Aligned_cols=159 Identities=16% Similarity=0.267 Sum_probs=66.4
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHH-----HCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEE
Q ss_conf 8740688614320038899999873-----04773377206886124653011047800025644431003555158517
Q gi|254780163|r 505 KPIGCYVFSGPTGVGKTEISKQLAF-----ALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSV 579 (798)
Q Consensus 505 rP~g~flf~GptGvGKTelak~la~-----~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sV 579 (798)
.|...+++.||+|+|||.|..+++. .-+...+-+++++|... .+.-+-.. +...+-+.. .-..+
T Consensus 32 ~~~npl~i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~yl~~~~~~~~-~~~~l~~~--------~~~~f~~~l--~~~d~ 100 (219)
T pfam00308 32 KAYNPLFIYGGVGLGKTHLLHAIGNYALRNFPNLRVVYLTSEEFLND-FVDALRDN--------KIEAFKKSY--RNVDL 100 (219)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHH-HHHHHHCC--------CHHHHHHHH--HHCCH
T ss_conf 76782699889999888999999999998499982888439999998-89999818--------888999997--63233
Q ss_pred EEECCHHHC--CHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCH
Q ss_conf 774044550--289999999987775021779977612542999942421455330368988211148899999872887
Q gi|254780163|r 580 VLLDEIEKS--HPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSP 657 (798)
Q Consensus 580 vl~DEiEKA--h~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~p 657 (798)
+++|+|+.- .+.....|..+++. +.++.+ -+|+||+.....+ ..+.|
T Consensus 101 l~iDDi~~l~~~~~~ee~lf~l~N~--~~~~~~--------~lllts~~~p~~l---------------------~~~~~ 149 (219)
T pfam00308 101 LLIDDIQFLAGKEKTQEEFFHTFNA--LHENNK--------QIVLTSDRPPKEL---------------------EGFED 149 (219)
T ss_pred HHHCCHHHHCCCHHHHHHHHHHHHH--HHHCCC--------EEEEECCCCCCCC---------------------CCCCH
T ss_conf 6522367656864789999999999--997298--------6999779981002---------------------45327
Q ss_pred HHHCCC--CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCC
Q ss_conf 881776--828962889999999999999999999998669889998899999997189
Q gi|254780163|r 658 EFLNRL--DSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGY 714 (798)
Q Consensus 658 eflnRi--d~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~ 714 (798)
.+..|+ --++.-.+++.++...|+.+.. .++|+. +++++.+||+.+..
T Consensus 150 dL~SRL~~g~~~~i~~pdd~~~~~iL~~~a-------~~r~l~--l~~~v~~yl~~r~~ 199 (219)
T pfam00308 150 RLRSRFEWGLIIAIEPPDLETRLAILRKKA-------EEENIN--IPNEVLNFIAQRIT 199 (219)
T ss_pred HHHHHHHCCEEEECCCCCHHHHHHHHHHHH-------HHCCCC--CCHHHHHHHHHHCC
T ss_conf 799998687566116999999999999999-------984999--99999999998427
No 177
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=98.72 E-value=4.1e-08 Score=77.48 Aligned_cols=106 Identities=22% Similarity=0.325 Sum_probs=74.8
Q ss_pred HHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH-----HHCCCCEEEEEH
Q ss_conf 334210000246653458999999999877520445657874068861432003889999987-----304773377206
Q gi|254780163|r 466 SVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLA-----FALGVQLLRFDM 540 (798)
Q Consensus 466 ~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la-----~~~~~~lir~dm 540 (798)
-.+..|+..|.++++||.-|.+.|..+++.-... .+|+||+ ++-|-||||+||+..|+.+| .|+...+++.=.
T Consensus 14 ~~~~~Le~~L~~~lfGQhla~~~v~~al~~~l~~-~~p~KpL-VlSfHG~tGtGKn~vs~liA~~Ly~~G~~S~~Vh~fi 91 (127)
T pfam06309 14 FNYHGLERDLARRLFGQHLVKQLVVRSVKGHWEN-PKPRKPL-VLSFHGWTGTGKNFVAEIIADNLYRDGLRSPYVHHFV 91 (127)
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCCCCCE-EEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEC
T ss_conf 8779999999875347798999999999999748-9999974-8870189998798999999999875434787568842
Q ss_pred HHHHCCCCCCHHCCCCCHHCC-CCC--CCCCCHHHHHCCCEEEEE
Q ss_conf 886124653011047800025-644--431003555158517774
Q gi|254780163|r 541 SEYMERHAVSRLIGAPPGYVG-FGQ--GGILADSVDQNPYSVVLL 582 (798)
Q Consensus 541 sey~e~~~vs~LiGappGYvG-~~e--gg~Lte~vr~~P~sVvl~ 582 (798)
+..-=+| |.+|- |.+ -.+.-..|++.|.|+.+|
T Consensus 92 ~~~hFPh---------~~~v~~YK~~L~~~I~~~v~~C~rslFIF 127 (127)
T pfam06309 92 ATNHFPH---------PKYVELYKVELKNQIRGTLRACQRSIFIF 127 (127)
T ss_pred CCCCCCC---------HHHHHHHHHHHHHHHHHHHHCCCCCEEEC
T ss_conf 4224897---------68899999999999999996499652319
No 178
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed
Probab=98.71 E-value=2.4e-08 Score=79.14 Aligned_cols=197 Identities=21% Similarity=0.271 Sum_probs=124.7
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC-EEEECCCCCHHHHHHHHHHHHHHCCCCCHHH-HE-------------E
Q ss_conf 7754861122217899999999862267787-4896676411668999999998548988345-20-------------1
Q gi|254780163|r 197 KVKKGKVDILVGRHEEINRTIQILCRRSKNN-PLYVGDPGVGKTAIAEGFAKQIVDGMVPDIL-LG-------------A 261 (798)
Q Consensus 197 ~AreGKLDPVIGRd~EI~riiqIL~RR~KNn-~~lvG~~gvGktaive~la~~i~~~~vp~~l-~~-------------~ 261 (798)
+-|-..++-|||-+--++-+..-|..-+=.. -++.|.-|||||+|+.-||.-+.-..-+..- .| .
T Consensus 9 k~rp~~f~~~~gq~~~~~~l~~~~~~~~~~~a~l~~g~rg~gkt~~ar~~ak~lnc~~~~~~~pc~~c~~c~~i~~~~~~ 88 (705)
T PRK05648 9 KWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNCETGVSSTPCGECSVCREIDEGRFV 88 (705)
T ss_pred HHCCCCHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf 31787576632819999999999970986304650078988898999999998677899988978776004666248977
Q ss_pred EEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCC---CCC-EEEEECCHHHHHCCCCCCCCCCCHHH-HHHHHHC--CCCE
Q ss_conf 445540467530634312378999999987203---898-39997361663015544434477788-8876630--2660
Q gi|254780163|r 262 RIFSLDMGNLIAGTRYRGDFEERIKKIVKEIES---YAN-AILYIDEIHTLVGAGSASGISVDASN-LLKPALS--SGAV 334 (798)
Q Consensus 262 ~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~---~~~-~ilfideih~ligag~~~g~~~d~an-~lkP~L~--rg~~ 334 (798)
-++++|.++ -+|- +-++.+++.+.- .|+ -|..|||+|+|- -.+-| +|| -|. ---+
T Consensus 89 d~~e~d~as------~~~v--~~~r~~~~~~~~~p~~~~~kv~~idevhmls---------~~~fnallk-tleepp~~v 150 (705)
T PRK05648 89 DLIEVDAAS------RTKV--EDTRELLDNVQYAPTRGRYKVYLIDEVHMLS---------SHSFNALLK-TLEEPPPHV 150 (705)
T ss_pred CEEEECCCC------CCCH--HHHHHHHHHCCCCCCCCCEEEEEEEHHHHCC---------HHHHHHHHH-HCCCCCCCE
T ss_conf 634451554------4788--9999999855517767745799984265417---------999999987-404797545
Q ss_pred EEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 38873048999998520111432001443068786899999986127665410351211178999998654201555646
Q gi|254780163|r 335 RCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPD 414 (798)
Q Consensus 335 ~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPd 414 (798)
++|-|||.-+ |. .-.-|.| -+..+.+-.+.++-..-|..+. ..-+|.|.++||....+.+.--+.|
T Consensus 151 ~f~~att~~~--k~--p~t~~sr-c~~~~~~~~~~~~~~~~l~~~~----~~e~~~~~~~~~~~~~~~~~g~~rd----- 216 (705)
T PRK05648 151 KFLLATTDPQ--KL--PVTILSR-CLQFSLKNMSPERVVEHLSHVL----GAENVPFEEDALWLLGRAADGSMRD----- 216 (705)
T ss_pred EEEEECCCHH--HC--CHHHHHH-HHHCCCCCCCHHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHCCCCHHH-----
T ss_conf 9998428735--37--5899976-6430236899999999999999----9759977899999999974896777-----
Q ss_pred HHHHHHHHHHHH
Q ss_conf 798899865333
Q gi|254780163|r 415 KAIDVIDEAGAS 426 (798)
Q Consensus 415 kAidllDea~a~ 426 (798)
|..|+|.|-|.
T Consensus 217 -~ls~~dq~~~~ 227 (705)
T PRK05648 217 -AMSLTDQAIAF 227 (705)
T ss_pred -HHHHHHHHHHC
T ss_conf -99999999860
No 179
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=98.70 E-value=1.7e-07 Score=72.97 Aligned_cols=152 Identities=28% Similarity=0.428 Sum_probs=111.8
Q ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHH--HC---CC--CCCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 8966764116689999999985489883452014455404675--30---63--43123789999999872038983999
Q gi|254780163|r 229 LYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNL--IA---GT--RYRGDFEERIKKIVKEIESYANAILY 301 (798)
Q Consensus 229 ~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l--~a---g~--~~rg~fe~r~~~~~~~~~~~~~~ilf 301 (798)
|||||||||||+|....|.-+ |+.++.+++|.| +| |- .|-|-.=.|+-.-|+.++.. |.+.-
T Consensus 454 ClvGPPGVGKTSlg~SIA~AL----------nRkFvR~SlGG~~DeAEIrGHRRTYvGAMPGriiQ~lk~~~t~-NPl~L 522 (941)
T TIGR00763 454 CLVGPPGVGKTSLGKSIAKAL----------NRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTK-NPLIL 522 (941)
T ss_pred EEECCCCCCHHHHHHHHHHHH----------CCEEEEEEECCCEEHHHCCCCCCCCCCCCHHHHHHHHHHCCCC-CCEEE
T ss_conf 720726954222789999996----------8804999526722031127864320346725789998760415-88068
Q ss_pred ECCHHHHH-CCCCCCCCC-----------------------CCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCH-HHH
Q ss_conf 73616630-155444344-----------------------77788887663026603887304899999852011-143
Q gi|254780163|r 302 IDEIHTLV-GAGSASGIS-----------------------VDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDK-ALV 356 (798)
Q Consensus 302 ideih~li-gag~~~g~~-----------------------~d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~-al~ 356 (798)
||||-=|- ++|-.+.-+ .|.|++| - -+|+ |-. .++.=| .|-
T Consensus 523 lDEIDK~~~~~~~~GDPaSALLEvLDPEQN~~F~DHYldvp~DLS~V~-C-------yFi~--TAN----~~d~IP~PLL 588 (941)
T TIGR00763 523 LDEIDKIGLKSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVL-C-------YFIA--TAN----SIDTIPRPLL 588 (941)
T ss_pred EEEEEEECCCCCCCCCHHHHHHHHCCHHHCCCCCCCCCCCCCCHHHHH-H-------HEEE--CCC----CCCCCCCCCC
T ss_conf 620220016788655637888641286436042553002340042002-1-------0002--447----5767772213
Q ss_pred HHCEEEEECCCCHHHHHHHHHH-HHHHHHHHCC-----CEECCHHHHHHHHHHHH
Q ss_conf 2001443068786899999986-1276654103-----51211178999998654
Q gi|254780163|r 357 RRFQKIDVSEPSIEDAIEIVKG-IKPYFEEHHQ-----LRYSKEAIRAAVQLSVR 405 (798)
Q Consensus 357 rrF~~i~v~ep~~~~~~~iL~~-~~~~ye~~h~-----v~~~~~al~~av~ls~r 405 (798)
.|-+.|.|.==+.+|-+.|-++ |-++-=.-|| |.|+|+||...++.=.|
T Consensus 589 DRMEvI~lsGY~~~EK~~IA~~yLiP~~~~~~GL~~~~l~~~d~al~~lI~~YtR 643 (941)
T TIGR00763 589 DRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKISDEALLLLIKYYTR 643 (941)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCEEECHHHHHHHHHHHHH
T ss_conf 7402452388876789999985471367987088813221268999999987513
No 180
>KOG0735 consensus
Probab=98.69 E-value=3.2e-07 Score=71.04 Aligned_cols=98 Identities=22% Similarity=0.421 Sum_probs=60.5
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCE----EEEEHHHHHCCC--CCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEE
Q ss_conf 0688614320038899999873047733----772068861246--5301104780002564443100355515851777
Q gi|254780163|r 508 GCYVFSGPTGVGKTEISKQLAFALGVQL----LRFDMSEYMERH--AVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVL 581 (798)
Q Consensus 508 g~flf~GptGvGKTelak~la~~~~~~l----ir~dmsey~e~~--~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl 581 (798)
|..|+.||.|.|||-|+|+++...++++ .++|||+...+. .+.+++ ....+++++..| |||+
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l-----------~~vfse~~~~~P-SiIv 499 (952)
T KOG0735 432 GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFL-----------NNVFSEALWYAP-SIIV 499 (952)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECHHCCCHHHHHHHHHH-----------HHHHHHHHHHCC-CEEE
T ss_conf 6189867998777699999998751565069999752210420489999999-----------999999886378-0899
Q ss_pred ECCHHH-CC------------HHHHHHHH-HHHHHHHCCCCCCCEECCCCEEEEEECC
Q ss_conf 404455-02------------89999999-9877750217799776125429999424
Q gi|254780163|r 582 LDEIEK-SH------------PDVLNILL-QIMDYGILTDQSGKKISFRNVILIMTTN 625 (798)
Q Consensus 582 ~DEiEK-Ah------------~~v~~~ll-qild~G~ltd~~Gr~vdf~n~iii~TsN 625 (798)
||.+|- || ..-++.|| |+.+. .++++ +. ..+|.|++
T Consensus 500 LDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~-y~~~~--~~-----ia~Iat~q 549 (952)
T KOG0735 500 LDDLDCLASASSNENGQDGVVSERLAAFLNQVIKI-YLKRN--RK-----IAVIATGQ 549 (952)
T ss_pred ECCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHCCC--CE-----EEEEEECH
T ss_conf 70503540568444773028999999999999999-87068--57-----99998514
No 181
>PRK08770 DNA polymerase III subunits gamma and tau; Validated
Probab=98.68 E-value=7.2e-08 Score=75.70 Aligned_cols=258 Identities=19% Similarity=0.242 Sum_probs=155.2
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC-EEEECCCCCHHHHHHHHHHHHHHCCCCCH-HH-------------HEE
Q ss_conf 7754861122217899999999862267787-48966764116689999999985489883-45-------------201
Q gi|254780163|r 197 KVKKGKVDILVGRHEEINRTIQILCRRSKNN-PLYVGDPGVGKTAIAEGFAKQIVDGMVPD-IL-------------LGA 261 (798)
Q Consensus 197 ~AreGKLDPVIGRd~EI~riiqIL~RR~KNn-~~lvG~~gvGktaive~la~~i~~~~vp~-~l-------------~~~ 261 (798)
+-|-..++-|||-+--++-+..-|..-+=.. -++.|.-|||||+|+.-||.-+....-+. .- +-.
T Consensus 9 k~rp~~f~~~~gq~~~~~~l~~~~~~~~~~~a~lf~g~rg~gkt~~ar~~a~~lnc~~~~~~~pc~~c~~c~~i~~~~~~ 88 (663)
T PRK08770 9 KWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNCETGTSADPCGQCPACLDIDAGRYI 88 (663)
T ss_pred HHCCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf 50887464522859999999999970997404762279988888999999998678999999978778778988548988
Q ss_pred EEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCC---CCC-EEEEECCHHHHHCCCCCCCCCCCHHH-HHHHHHC--CCCE
Q ss_conf 445540467530634312378999999987203---898-39997361663015544434477788-8876630--2660
Q gi|254780163|r 262 RIFSLDMGNLIAGTRYRGDFEERIKKIVKEIES---YAN-AILYIDEIHTLVGAGSASGISVDASN-LLKPALS--SGAV 334 (798)
Q Consensus 262 ~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~---~~~-~ilfideih~ligag~~~g~~~d~an-~lkP~L~--rg~~ 334 (798)
-++++|.++ -+|- +-++.+++.+.- .+. -|..|||+|+|- -.+-| +|| -|. -.-+
T Consensus 89 d~~e~daas------~~~v--~~~r~~~~~~~~~p~~~~~kvy~idevhmls---------~~~fna~lk-tleepp~~v 150 (663)
T PRK08770 89 DLLEIDAAS------NTGV--DDVREVIENAQYMPSRGKFKVYLIDEVHMLS---------KAAFNALLK-TLEEPPEHV 150 (663)
T ss_pred CEEEEECCC------CCCH--HHHHHHHHHCCCCCCCCCEEEEEEECHHHCC---------HHHHHHHHH-HHCCCCCCE
T ss_conf 658864676------5888--9999999844358877743699970043328---------999999987-402786442
Q ss_pred EEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 38873048999998520111432001443068786899999986127665410351211178999998654201555646
Q gi|254780163|r 335 RCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPD 414 (798)
Q Consensus 335 ~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPd 414 (798)
++|-|||.- +|. .-.-|.|. +....+-.+.++-..-|..+.. .-+|.|.++||....+.+.--+.|
T Consensus 151 ~f~~att~~--~k~--p~t~~src-~~f~~~~~~~~~~~~~l~~~~~----~e~~~~~~~~~~~~~~~~~gs~rd----- 216 (663)
T PRK08770 151 KFLLATTDP--QKL--PVTVLSRC-LQFNLKRLDEDQIQGQMTRILA----AEQIESDPSAIVQLSKAADGSLRD----- 216 (663)
T ss_pred EEEEECCCH--HHC--CHHHHHHH-HHCCCCCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHCCCCHHH-----
T ss_conf 899854873--337--48999888-7634377999999999999999----839976999999999974785677-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC---HHHHHCCHHHHHHHHCCHHHHHHHCHHHHHHHHHH
Q ss_conf 798899865333321144322113657899986631024531---01110011233421000024665345899999999
Q gi|254780163|r 415 KAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIASMNRSIH---TTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSS 491 (798)
Q Consensus 415 kAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~gip---~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~v~~ 491 (798)
|..|+|.|-|.. ...|+.++|..++-..-.+.. +..+...+...++.+-+.|..+-+.=+.+.+.+..
T Consensus 217 -~lsl~~q~~~~~--------~~~~~~~~v~~mlg~~~~~~~~~l~~al~~~d~~~~~~~~~~~~~~~~~~~~~l~~l~~ 287 (663)
T PRK08770 217 -GLSLLDQAIAYA--------GGALREDVVRTMLGTVDRTQVGAMLQALADGDGARLLQVVAALAEFSPDWSGVLEALAE 287 (663)
T ss_pred -HHHHHHHHHHHC--------CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf -888999999866--------89768999999848888789999999999668999999999999868899999999999
Q ss_pred HHHH
Q ss_conf 9877
Q gi|254780163|r 492 SIKI 495 (798)
Q Consensus 492 ~i~~ 495 (798)
.+.+
T Consensus 288 ~~~~ 291 (663)
T PRK08770 288 ALHR 291 (663)
T ss_pred HHHH
T ss_conf 9999
No 182
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.65 E-value=3.4e-06 Score=63.65 Aligned_cols=209 Identities=21% Similarity=0.357 Sum_probs=121.7
Q ss_pred CCEEEE-CCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHH----HHHC-CCCCE-
Q ss_conf 874896-6764116689999999985489883452014455404675306343123789999999----8720-38983-
Q gi|254780163|r 226 NNPLYV-GDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIV----KEIE-SYANA- 298 (798)
Q Consensus 226 Nn~~lv-G~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~----~~~~-~~~~~- 298 (798)
-||+++ |+.|.|||.+.+.....+.+... +.+++-+...... .+-+.++. ++.+ .. ++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~-----~a~v~y~~se~f~---------~~~v~a~~~~~~~~Fk~~y-~~d 177 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGP-----NARVVYLTSEDFT---------NDFVKALRDNEMEKFKEKY-SLD 177 (408)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHCC-----CCEEEECCHHHHH---------HHHHHHHHHHHHHHHHHHH-CCC
T ss_conf 895799879999789999999999986299-----8648850489989---------9999998850488888764-267
Q ss_pred EEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHCCHHHHHHCE---EEEECCCCHHHHH
Q ss_conf 999736166301554443447778888766302660388730--48999998520111432001---4430687868999
Q gi|254780163|r 299 ILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGST--TYSEYRQFFEKDKALVRRFQ---KIDVSEPSIEDAI 373 (798)
Q Consensus 299 ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~Igat--T~~ey~~~~e~d~al~rrF~---~i~v~ep~~~~~~ 373 (798)
.|.||+|+-+.|..++.. -.=+++--....|. |+|-+. +|.|... .++-|..||. .+.|.+|+.++.+
T Consensus 178 lllIDDiq~l~gk~~~qe---efFh~FN~l~~~~k-qIvltsdr~P~~l~~---~~~rL~SR~~~Gl~~~I~~Pd~e~r~ 250 (408)
T COG0593 178 LLLIDDIQFLAGKERTQE---EFFHTFNALLENGK-QIVLTSDRPPKELNG---LEDRLRSRLEWGLVVEIEPPDDETRL 250 (408)
T ss_pred EEEECHHHHHCCCHHHHH---HHHHHHHHHHHCCC-EEEEECCCCCHHHCC---CCHHHHHHHHCEEEEEECCCCHHHHH
T ss_conf 355513867567715799---99999998885088-799970788322110---35889989863057752798889999
Q ss_pred HHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH-----------HHHHH-HHHHCCCCH
Q ss_conf 999861276654103512111789999986542015556467988998653333-----------21144-322113657
Q gi|254780163|r 374 EIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEAGASQ-----------ILQPL-SKRRKFITE 441 (798)
Q Consensus 374 ~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea~a~~-----------~~~~~-~~~~~~~~~ 441 (798)
.||+. -....++.++++++...+.-..|=+.+ |. -|++-||..+... .+... ....+ ++.
T Consensus 251 aiL~k----ka~~~~~~i~~ev~~~la~~~~~nvRe--Le-gaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~~~~-iti 322 (408)
T COG0593 251 AILRK----KAEDRGIEIPDEVLEFLAKRLDRNVRE--LE-GALNRLDAFALFTKRAITIDLVKEILKDLLRAGEK-ITI 322 (408)
T ss_pred HHHHH----HHHHCCCCCCHHHHHHHHHHHHCCHHH--HH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC-CCH
T ss_conf 99999----998658888879999999970030999--99-99999999998538757699999999986401455-899
Q ss_pred HHHHHHHHHCCCCCCHHHHHCCHH
Q ss_conf 899986631024531011100112
Q gi|254780163|r 442 KDIKKTIASMNRSIHTTSFSRDDD 465 (798)
Q Consensus 442 ~~i~~~~~~~~~gip~~~~~~~~~ 465 (798)
++|..+|++.- +|++..+....+
T Consensus 323 e~I~~~Va~~y-~v~~~dl~s~~R 345 (408)
T COG0593 323 EDIQKIVAEYY-NVKVSDLLSKSR 345 (408)
T ss_pred HHHHHHHHHHH-CCCHHHHHCCCC
T ss_conf 99999999884-988999624566
No 183
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed
Probab=98.65 E-value=2.5e-05 Score=57.42 Aligned_cols=39 Identities=8% Similarity=0.239 Sum_probs=22.0
Q ss_pred HHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 34520144554046753063431237899999998720389839997
Q gi|254780163|r 256 DILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYI 302 (798)
Q Consensus 256 ~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfi 302 (798)
+.-..++||-+|=--|++... +..+++.++.-+.-+.||
T Consensus 115 p~~~~~kv~~idevhmls~~~--------fnallktleepp~~v~f~ 153 (705)
T PRK05648 115 PTRGRYKVYLIDEVHMLSSHS--------FNALLKTLEEPPPHVKFL 153 (705)
T ss_pred CCCCCEEEEEEEHHHHCCHHH--------HHHHHHHCCCCCCCEEEE
T ss_conf 767745799984265417999--------999987404797545999
No 184
>KOG2028 consensus
Probab=98.64 E-value=8.2e-08 Score=75.31 Aligned_cols=213 Identities=16% Similarity=0.254 Sum_probs=125.2
Q ss_pred HHCCCCHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC
Q ss_conf 21136578999866310245310111001123342100002466534589999999998775204456578740688614
Q gi|254780163|r 435 RRKFITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSG 514 (798)
Q Consensus 435 ~~~~~~~~~i~~~~~~~~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~G 514 (798)
++......++...+ .+-|+.. +.+ -+--.-++||++++.. +.+.|+.. . .+| +-|+.|-|
T Consensus 110 ~~~~l~~~e~R~~~----qh~PLae-----rmR-----PktL~dyvGQ~hlv~q--~gllrs~i--e-q~~-ipSmIlWG 169 (554)
T KOG2028 110 HKRALAAEEIRQML----QHKPLAE-----RMR-----PKTLDDYVGQSHLVGQ--DGLLRSLI--E-QNR-IPSMILWG 169 (554)
T ss_pred CCCHHHHHHHHHHH----CCCCHHH-----HCC-----CCHHHHHCCHHHHCCC--CHHHHHHH--H-CCC-CCCEEEEC
T ss_conf 42112048888775----1697455-----418-----4368775053441483--26899998--7-088-87058866
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEE-HHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHH
Q ss_conf 3200388999998730477337720-688612465301104780002564443100355515851777404455028999
Q gi|254780163|r 515 PTGVGKTEISKQLAFALGVQLLRFD-MSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVL 593 (798)
Q Consensus 515 ptGvGKTelak~la~~~~~~lir~d-msey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~ 593 (798)
|.|+|||-||+.++....++-.||= .|- ....+.-+-+. +++.-.+ ..-.+--+|+++|||..-+..-+
T Consensus 170 ppG~GKTtlArlia~tsk~~SyrfvelSA--t~a~t~dvR~i------fe~aq~~--~~l~krkTilFiDEiHRFNksQQ 239 (554)
T KOG2028 170 PPGTGKTTLARLIASTSKKHSYRFVELSA--TNAKTNDVRDI------FEQAQNE--KSLTKRKTILFIDEIHRFNKSQQ 239 (554)
T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEEEEC--CCCCHHHHHHH------HHHHHHH--HHHHCCEEEEEEHHHHHHHHHHH
T ss_conf 99876588999998605777427999741--45661889999------9998878--76524406987377655323211
Q ss_pred HHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCC
Q ss_conf 99999877750217799776125429999424214553303689882111488999998728878817768289628899
Q gi|254780163|r 594 NILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLS 673 (798)
Q Consensus 594 ~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~ 673 (798)
++||-..++|.+| +|=.|+ .+.+ | . | -..++.|. .|++.++|.
T Consensus 240 D~fLP~VE~G~I~------------lIGATT-------ENPS--F-------q----l----n~aLlSRC-~VfvLekL~ 282 (554)
T KOG2028 240 DTFLPHVENGDIT------------LIGATT-------ENPS--F-------Q----L----NAALLSRC-RVFVLEKLP 282 (554)
T ss_pred HCCCCEECCCCEE------------EEECCC-------CCCC--C-------C----H----HHHHHHCC-CEEEECCCC
T ss_conf 0034213067069------------985366-------8976--0-------1----1----27787316-066733688
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----CCCEEEECHHHHHHHHHCCC
Q ss_conf 999999999999999999986----69889998899999997189
Q gi|254780163|r 674 SDIIRQVVHKFIMKLELQLQE----KGISFHFSEEVINWLVSHGY 714 (798)
Q Consensus 674 ~~~~~~i~~~~l~~l~~~l~~----~~i~l~~~~~~~~~l~~~~~ 714 (798)
.+++..|+..-+.-|..--+. -+-.+.+++++++||+..+-
T Consensus 283 ~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsd 327 (554)
T KOG2028 283 VNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSD 327 (554)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 899999999998763210256889998312456889999987047
No 185
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.64 E-value=3.7e-06 Score=63.39 Aligned_cols=187 Identities=14% Similarity=0.185 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCE-EEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHH
Q ss_conf 22178999999998622677874-89667641166899999999854898834520144554046753063431237899
Q gi|254780163|r 206 LVGRHEEINRTIQILCRRSKNNP-LYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEER 284 (798)
Q Consensus 206 VIGRd~EI~riiqIL~RR~KNn~-~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r 284 (798)
|+|-..++-..++......-+++ .|.|++|+|||.+.+.+...+.+. +++++-+.+... .+.
T Consensus 25 i~g~n~~~~~al~~~~~~~~~~~l~l~G~~G~GKTHLLqA~~~~~~~~-------~~~~~yl~~~~~----------~~~ 87 (235)
T PRK08084 25 YPGDNDSLLAALQNVLRQEHSGYIYLWGREGAGRSHLLHAACAELSQR-------GDAVGYVPLDKR----------AWF 87 (235)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-------CCCEEEEEHHHH----------HHH
T ss_conf 448869999999999857898769998999988899999999999707-------985799877986----------651
Q ss_pred HHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEE-CCHHHHHHHHHCCHHHHHHCE---
Q ss_conf 9999987203898399973616630155444344777888876630266038873-048999998520111432001---
Q gi|254780163|r 285 IKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGS-TTYSEYRQFFEKDKALVRRFQ--- 360 (798)
Q Consensus 285 ~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~Iga-tT~~ey~~~~e~d~al~rrF~--- 360 (798)
...+++.++.. -++.||+||.+.|....+. -.-|++--...+|.-++|-+ ..+-..-.... +-|..||+
T Consensus 88 ~~~~l~~l~~~--dll~iDDi~~i~g~~~~ee---~lF~l~N~~~~~g~~~ll~ts~~~P~~l~~~l--~DL~SRl~~g~ 160 (235)
T PRK08084 88 VPEVLEGMEQL--SLVCIDNIECIAGDELWEM---AIFDLYNRILESGKTRLLITGDRPPRQLNLGL--PDLASRLDWGQ 160 (235)
T ss_pred HHHHHHHHHHC--CEEEEECHHHHCCCHHHHH---HHHHHHHHHHHHCCCEEEEECCCCHHHCCCCC--HHHHHHHHCCC
T ss_conf 79999876418--9899827455469978999---99999999998489669996798824302312--88999995697
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 443068786899999986127665410351211178999998654201555646798899865
Q gi|254780163|r 361 KIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEA 423 (798)
Q Consensus 361 ~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea 423 (798)
.+.+.+|+.++-+.||+.. -...|+.++++++.+.++-..|=+.. =..+++-||.+
T Consensus 161 ~~~i~~~dde~~~~iL~~~----a~~rgl~l~~~V~~yl~~~~~R~~~~---L~~~l~~Ld~~ 216 (235)
T PRK08084 161 IYKLQPLSDEEKLQALQLR----ARLRGFELPEDVGRFLLKRLDREMRT---LFMTLDQLDKA 216 (235)
T ss_pred EEEECCCCHHHHHHHHHHH----HHHCCCCCCHHHHHHHHHHCCCCHHH---HHHHHHHHHHH
T ss_conf 2785599989999999999----99739999989999999861588999---99999999999
No 186
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.64 E-value=2.2e-06 Score=65.09 Aligned_cols=238 Identities=21% Similarity=0.267 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHC-----CC-------CCH-----------------
Q ss_conf 2217899999999862267787489667641166899999999854-----89-------883-----------------
Q gi|254780163|r 206 LVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVD-----GM-------VPD----------------- 256 (798)
Q Consensus 206 VIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~-----~~-------vp~----------------- 256 (798)
|+|-|+=...++=.+--.+=..+++-|++|+|||.+|.+||..+-. +. .|+
T Consensus 14 IvGQe~~k~aLll~av~p~iGgVLi~G~~GtgKStlvRala~lLP~i~~v~~~~f~~~p~~p~~~~~~~~~~~~~~~~~~ 93 (347)
T CHL00081 14 IVGQEEMKLALLLNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKNDPFNSDPRDPDLMSDEVRERIRNGEKIP 93 (347)
T ss_pred HCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
T ss_conf 53849999999998257887869987899874999999999857874220688767898981002426665431466675
Q ss_pred -HHHEEEEEEEEHHHH---HCCCCCCCHHHHHHH--------HHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHH
Q ss_conf -452014455404675---306343123789999--------99987203898399973616630155444344777888
Q gi|254780163|r 257 -ILLGARIFSLDMGNL---IAGTRYRGDFEERIK--------KIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNL 324 (798)
Q Consensus 257 -~l~~~~i~~ld~~~l---~ag~~~rg~fe~r~~--------~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~ 324 (798)
......+++|-+++- +.|+- ++|.-++ .++.++ + .=|||||||.-+ .-...|.
T Consensus 94 ~~~~~~p~v~lPlgaTEDrv~Gsl---Die~al~~G~~~f~pGlLa~A--~-rGiLyvDEINll---------~d~~v~~ 158 (347)
T CHL00081 94 TKKIKIPMVDLPLGATEDRVCGTI---DIEKALTEGVKAFEPGLLAKA--N-RGILYVDEVNLL---------DDHLVDI 158 (347)
T ss_pred CEECCCCEEECCCCCCCCEECCCH---HHHHHHHCCCCCCCCCHHHHC--C-CCEEEEEHHHHH---------HHHHHHH
T ss_conf 211468625368888523011400---099898458711565312220--3-885886145432---------3799999
Q ss_pred HHHHHCCCCE---------------EEEEECCHHHHHHHHHCCHHHHHHCE-EEEEC-CCCHHHHHHHHHHHHHHHHH--
Q ss_conf 8766302660---------------38873048999998520111432001-44306-87868999999861276654--
Q gi|254780163|r 325 LKPALSSGAV---------------RCIGSTTYSEYRQFFEKDKALVRRFQ-KIDVS-EPSIEDAIEIVKGIKPYFEE-- 385 (798)
Q Consensus 325 lkP~L~rg~~---------------~~IgatT~~ey~~~~e~d~al~rrF~-~i~v~-ep~~~~~~~iL~~~~~~ye~-- 385 (798)
|--+++.|.. -+||+.-|+|. |--++|..||- .|.+. +++.++-++|++.. ..|+.
T Consensus 159 LLda~a~G~~~VEReG~S~~~Pa~F~liaT~NPeEg----eLrp~llDRF~l~v~v~~~~~~e~R~eiv~~r-~~f~~~p 233 (347)
T CHL00081 159 LLDSAASGWNTVEREGISIRHPARFVLIGSGNPEEG----ELRPQLLDRFGMHAEIRTVKDPELRVKIVEQR-SNFDKNP 233 (347)
T ss_pred HHHHHHCCEEEECCCCEEECCCCCEEEEECCCCCCC----CCCHHHHHHEEEEEECCCCCCHHHHHHHHHHH-HHHHHCH
T ss_conf 999985580898046423305750068855786556----74888882632267458878989999999999-9765196
Q ss_pred --HC-CCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH---------------HHHHHHHHCCCCHHHHHHH
Q ss_conf --10-35121117899999865420155564679889986533332---------------1144322113657899986
Q gi|254780163|r 386 --HH-QLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEAGASQI---------------LQPLSKRRKFITEKDIKKT 447 (798)
Q Consensus 386 --~h-~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea~a~~~---------------~~~~~~~~~~~~~~~i~~~ 447 (798)
|. ...-..+.+..-+..+...+++-..||..+..+-+.|.... ..+.-..+..|+.+||..+
T Consensus 234 ~~f~~~~~~~~~~l~~~I~~Ar~~L~~V~v~~~~~~~i~~~~~~~~v~g~RA~I~l~raARA~AAL~GR~~V~~eDv~~a 313 (347)
T CHL00081 234 ENFREKYSESQDALKTQIILARQLLPNVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFNGRDEVTPGDIEKV 313 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 99999988789999999999986447735599999999999998489987189999999999999869983689999999
Q ss_pred HH----HCCCCCCHHHHHCC
Q ss_conf 63----10245310111001
Q gi|254780163|r 448 IA----SMNRSIHTTSFSRD 463 (798)
Q Consensus 448 ~~----~~~~gip~~~~~~~ 463 (798)
.. .+.+-.|......+
T Consensus 314 a~lVL~HRlrr~P~e~~~s~ 333 (347)
T CHL00081 314 ITLCLRHRLRKDPLESIDSG 333 (347)
T ss_pred HHHHHHHHCCCCCCCCCCCC
T ss_conf 99842010579962001652
No 187
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=98.64 E-value=2.7e-08 Score=78.72 Aligned_cols=116 Identities=24% Similarity=0.267 Sum_probs=65.5
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCC---CCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 748966764116689999999985489883452014455404675306343---12378999999987203898399973
Q gi|254780163|r 227 NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRY---RGDFEERIKKIVKEIESYANAILYID 303 (798)
Q Consensus 227 n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~---rg~fe~r~~~~~~~~~~~~~~ilfid 303 (798)
+++|+|+||+|||++++.+|+++....+ ...+.. -..+...|+.+..+ ...|.. ..+-...+.+ -+||+|
T Consensus 1 ~vll~Gp~G~GKT~la~~la~~l~~~~~--~~i~~~-~~~~~~dl~G~~~~~~~~~~~~~---g~l~~a~~~g-~vl~lD 73 (139)
T pfam07728 1 GVLLVGPPGTGKSELAERLAAALSNRPV--FYVQLT-RDTTEEDLKGRRNIANGTTSWVD---GPLVRAAREG-EIAVLD 73 (139)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCCCC--HHHCCC-CCCCHHHCCCCEECCCCCEEEEC---CHHHCCCCCC-CEEEEC
T ss_conf 9899989975699999999998079831--112146-55652220573423799357815---5141010128-689963
Q ss_pred CHHHHHCCCCCCCCCCCHHHHHHHHHCCCC--------------------EEEEEECCHHHHHHHHHCCHHHHHHC
Q ss_conf 616630155444344777888876630266--------------------03887304899999852011143200
Q gi|254780163|r 304 EIHTLVGAGSASGISVDASNLLKPALSSGA--------------------VRCIGSTTYSEYRQFFEKDKALVRRF 359 (798)
Q Consensus 304 eih~ligag~~~g~~~d~an~lkP~L~rg~--------------------~~~IgatT~~ey~~~~e~d~al~rrF 359 (798)
||... +-++-+.|-+.|..++ +++|+++.+. |+...+-|+||.|||
T Consensus 74 Ein~a---------~~~v~~~L~~~le~~~~~~~~~~~~~~~~~~~~~~~f~viaT~N~~-~~g~~~l~~Al~~RF 139 (139)
T pfam07728 74 EINRA---------NPDVLNSLLSLLDERRLLLPEGGELVKVAPDDFAKRFRLIATMNPL-DRGLNELSPALRSRF 139 (139)
T ss_pred CHHHC---------CHHHHHHHHHHHCCCEEEECCCCEEECCCCCCCCCCEEEEEEECCC-CCCCCCCCHHHHCCC
T ss_conf 43448---------9999999999974896983689727336666789996999975896-547800998997509
No 188
>PRK12377 putative replication protein; Provisional
Probab=98.63 E-value=6.2e-07 Score=68.99 Aligned_cols=122 Identities=25% Similarity=0.340 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH---HCCCCEEEEEHHHHHCCCCCCHHCCCCC
Q ss_conf 4589999999998775204456578740688614320038899999873---0477337720688612465301104780
Q gi|254780163|r 481 GQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAF---ALGVQLLRFDMSEYMERHAVSRLIGAPP 557 (798)
Q Consensus 481 GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~---~~~~~lir~dmsey~e~~~vs~LiGapp 557 (798)
||..|+..--.-. .++.+ -.++++|+||+|||||.||-+++. ..+....-+.+++.++ +|-.+
T Consensus 82 ~~~~a~~~a~~~~----~~F~~---~~~NlIf~G~pGtGKTHLA~AIg~~a~~~G~sVlF~t~~dLv~-----~L~~a-- 147 (248)
T PRK12377 82 GQRYALSQAKSIA----DELMT---GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS-----RLHES-- 147 (248)
T ss_pred HHHHHHHHHHHHH----HHHHC---CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHH-----HHHHH--
T ss_conf 8999999999999----98731---8860899899998788999999999998799699988999999-----99999--
Q ss_pred HHCCCCCCCCCCHH-HH-HCCCEEEEECCH--HHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHH
Q ss_conf 00256444310035-55-158517774044--5502899999999877750217799776125429999424214553
Q gi|254780163|r 558 GYVGFGQGGILADS-VD-QNPYSVVLLDEI--EKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEM 631 (798)
Q Consensus 558 GYvG~~egg~Lte~-vr-~~P~sVvl~DEi--EKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~ 631 (798)
|++ |.+-+. ++ -.-+-++.+||+ ....+.--++|.|+++.-.-. . .=+|+|||+.-.+.
T Consensus 148 ----~~~-g~~~~k~l~~l~~~dLLIIDElG~~~~s~~~~~llfqlI~~Ry~~-~---------ks~IiTTNL~f~ew 210 (248)
T PRK12377 148 ----YDN-GQSGEKFLQELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTAS-M---------RSVGMLTNLNHEAM 210 (248)
T ss_pred ----HHC-CCCHHHHHHHHHCCCEEEEHHCCCCCCCHHHHHHHHHHHHHHHHC-C---------CCEEEECCCCHHHH
T ss_conf ----984-850999999973389898600057889867999999999999855-7---------98689758997799
No 189
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.63 E-value=2.8e-07 Score=71.47 Aligned_cols=212 Identities=23% Similarity=0.330 Sum_probs=125.7
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC-EEEECCCCCHHHHHHHHHHHHHHCCC--CCHHH----------HE--
Q ss_conf 87754861122217899999999862267787-48966764116689999999985489--88345----------20--
Q gi|254780163|r 196 EKVKKGKVDILVGRHEEINRTIQILCRRSKNN-PLYVGDPGVGKTAIAEGFAKQIVDGM--VPDIL----------LG-- 260 (798)
Q Consensus 196 e~AreGKLDPVIGRd~EI~riiqIL~RR~KNn-~~lvG~~gvGktaive~la~~i~~~~--vp~~l----------~~-- 260 (798)
.+-|--.++-|+|-+.-.+.+...|.-.+=.+ -++-|+-|||||+++.-+|.-+...+ ..+.. .|
T Consensus 8 rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 8 RKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHHCCCCHHHHCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 88583007776364899999999998084233365137777671049999999956889877772253166686514886
Q ss_pred EEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCC----CCCEEEEECCHHHHHCCCCCCCCCCCHHH-HHHHHHC--CCC
Q ss_conf 1445540467530634312378999999987203----89839997361663015544434477788-8876630--266
Q gi|254780163|r 261 ARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIES----YANAILYIDEIHTLVGAGSASGISVDASN-LLKPALS--SGA 333 (798)
Q Consensus 261 ~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~----~~~~ilfideih~ligag~~~g~~~d~an-~lkP~L~--rg~ 333 (798)
.-++++|.++ -+|= +-++.+++++.- ...-|..|||+|++- --|-| +|| -|. ---
T Consensus 88 ~DviEiDaAS------n~gV--ddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS---------~~afNALLK-TLEEPP~h 149 (515)
T COG2812 88 IDVIEIDAAS------NTGV--DDIREIIEKVNYAPSEGRYKVYIIDEVHMLS---------KQAFNALLK-TLEEPPSH 149 (515)
T ss_pred CCCHHHHHHH------CCCH--HHHHHHHHHHCCCCCCCCCEEEEEECHHHHH---------HHHHHHHHC-CCCCCCCC
T ss_conf 4101136444------5486--7999999872468866664189983187643---------788888751-11368667
Q ss_pred EEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCH
Q ss_conf 03887304899999852011143200144306878689999998612766541035121117899999865420155564
Q gi|254780163|r 334 VRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLP 413 (798)
Q Consensus 334 ~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lP 413 (798)
+.+|=|||.. +|. +.. .-.|-|.-...--+.++-..-|..+. .--++.+.++|+....+.|.-=+.|
T Consensus 150 V~FIlATTe~--~Ki--p~T-IlSRcq~f~fkri~~~~I~~~L~~i~----~~E~I~~e~~aL~~ia~~a~Gs~RD---- 216 (515)
T COG2812 150 VKFILATTEP--QKI--PNT-ILSRCQRFDFKRLDLEEIAKHLAAIL----DKEGINIEEDALSLIARAAEGSLRD---- 216 (515)
T ss_pred EEEEEECCCC--CCC--CHH-HHHCCCCCCCCCCCHHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHCCCCHHH----
T ss_conf 4899853886--768--404-55212202225799999999999998----7448754799999999982897456----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 67988998653333211443221136578999866
Q gi|254780163|r 414 DKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTI 448 (798)
Q Consensus 414 dkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~ 448 (798)
|..|||.+-+.. . ..|+..+|..++
T Consensus 217 --alslLDq~i~~~------~--~~It~~~v~~~l 241 (515)
T COG2812 217 --ALSLLDQAIAFG------E--GEITLESVRDML 241 (515)
T ss_pred --HHHHHHHHHHCC------C--CCCCHHHHHHHH
T ss_conf --777899999706------7--765699999996
No 190
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.63 E-value=9.5e-06 Score=60.45 Aligned_cols=118 Identities=26% Similarity=0.309 Sum_probs=74.0
Q ss_pred HHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC--CCC------EEEEEHHHHHCCC
Q ss_conf 46653458999999999877520445657874068861432003889999987304--773------3772068861246
Q gi|254780163|r 476 GTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL--GVQ------LLRFDMSEYMERH 547 (798)
Q Consensus 476 ~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~--~~~------lir~dmsey~e~~ 547 (798)
-..||||++.++.+.++|...| ---.|||+||.|||||-+|+.||..+ +.. -..-.|-+...-+
T Consensus 14 F~eviGQe~v~~~L~~Ai~~gr--------i~HAYLFsGprG~GKTt~ARilAkaLNC~~~~~~~PCg~C~sC~~i~~g~ 85 (775)
T PRK07764 14 FAEVVGQEHVTEPLSTALDSGR--------INHAYLFSGPRGCGKTSSARILARSLNCAQGPTSTPCGVCDSCVALAPGG 85 (775)
T ss_pred HHHHCCCHHHHHHHHHHHHCCC--------CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf 6662285999999999998199--------76337623788878889999999996689999989888876378886389
Q ss_pred ----CCCHHCCCCCHHCCCCCCCCCCHHHHHCC----CEEEEECCHHHCCHHHHHHHHHHHHHH
Q ss_conf ----53011047800025644431003555158----517774044550289999999987775
Q gi|254780163|r 548 ----AVSRLIGAPPGYVGFGQGGILADSVDQNP----YSVVLLDEIEKSHPDVLNILLQIMDYG 603 (798)
Q Consensus 548 ----~vs~LiGappGYvG~~egg~Lte~vr~~P----~sVvl~DEiEKAh~~v~~~llqild~G 603 (798)
.|-.+=++. +-|-++=-.|.|.++..| |-|.++||++.-...-||.||.+|+|=
T Consensus 86 ~~~~DviEiDAAS--~~gVddiReL~e~~~y~P~~~ryKVyIIDEaHmls~~afNALLKtLEEP 147 (775)
T PRK07764 86 PGSLDVVEIDAAS--HGGVDDARELRERAFFAPAQSRYRIFIIDEAHMVTTAGFNALLKIVEEP 147 (775)
T ss_pred CCCCCEEEECCCC--CCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHCHHHHHHHHHHHCCC
T ss_conf 8888668731565--5688999999985476876786359998535440799999998862278
No 191
>KOG0737 consensus
Probab=98.62 E-value=2.1e-07 Score=72.36 Aligned_cols=200 Identities=22% Similarity=0.358 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf 99986127665410351211178999998654201555646798899865333321144322113657899986631024
Q gi|254780163|r 374 EIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIASMNR 453 (798)
Q Consensus 374 ~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 453 (798)
.|.......|+.|..+...|+-.. +-+-|- -|+..++....+. + +.+...|...+-...+++..
T Consensus 18 ~i~~~A~~~~~~~~~~~~~d~~~~-~~~eS~---------~~~~~~l~~~~~~---~--s~k~~~i~~ne~E~~i~s~~- 81 (386)
T KOG0737 18 KIVAAAISHHLVHLLVPRLDPNLK-ASRESL---------EKTEELLKNLEAE---L--SLKYRIIQKNEYEKRIASDV- 81 (386)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHH-HHHHHH---------HHHHHHHHHHHHH---C--CHHHHHHHHHHHHHHHHHCC-
T ss_conf 999999999999713323271333-348889---------9899999864320---1--01444201317878764020-
Q ss_pred CCCHHHH--HCCHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 5310111--00112334210000246653458999999999877520445657874068861432003889999987304
Q gi|254780163|r 454 SIHTTSF--SRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL 531 (798)
Q Consensus 454 gip~~~~--~~~~~~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~ 531 (798)
||...+ +-++...|....+.|++.|+=+-.-.+-.+ +.+|-. .|.|++|| ||+|+|||.+||++|...
T Consensus 82 -v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~------~g~Ll~--p~kGiLL~-GPpG~GKTmlAKA~Akea 151 (386)
T KOG0737 82 -VPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFA------KGKLLR--PPKGILLY-GPPGTGKTMLAKAIAKEA 151 (386)
T ss_pred -CCHHHCEEEHHHCCCHHHHHHHHHHHHHHCCCCHHHHC------CCCCCC--CCCCCEEC-CCCCCHHHHHHHHHHHHC
T ss_conf -14223202024133528999999987752012466641------453146--86430511-899821889999999872
Q ss_pred CCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHH-----HCCCEEEEECCHHH-----------CCHHHHHH
Q ss_conf 773377206886124653011047800025644431003555-----15851777404455-----------02899999
Q gi|254780163|r 532 GVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVD-----QNPYSVVLLDEIEK-----------SHPDVLNI 595 (798)
Q Consensus 532 ~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr-----~~P~sVvl~DEiEK-----------Ah~~v~~~ 595 (798)
+.++|-+.||+-++++ |+|+--|+.+|- -+| |+|..|||+- |-.-.-+=
T Consensus 152 ga~fInv~~s~lt~KW--------------fgE~eKlv~AvFslAsKl~P-~iIFIDEvds~L~~R~s~dHEa~a~mK~e 216 (386)
T KOG0737 152 GANFINVSVSNLTSKW--------------FGEAQKLVKAVFSLASKLQP-SIIFIDEVDSFLGQRRSTDHEATAMMKNE 216 (386)
T ss_pred CCCCCEEECCCCCHHH--------------HHHHHHHHHHHHHHHHHCCC-CEEEHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 7971000136553266--------------77788899999820653486-15656658889864046427999999999
Q ss_pred HHHHHHHHHCCCCCCCEECCCCEEEEE
Q ss_conf 999877750217799776125429999
Q gi|254780163|r 596 LLQIMDYGILTDQSGKKISFRNVILIM 622 (798)
Q Consensus 596 llqild~G~ltd~~Gr~vdf~n~iii~ 622 (798)
|.-.. +|..|+.+-| |+||
T Consensus 217 FM~~W-DGl~s~~~~r-------VlVl 235 (386)
T KOG0737 217 FMALW-DGLSSKDSER-------VLVL 235 (386)
T ss_pred HHHHH-CCCCCCCCCE-------EEEE
T ss_conf 99986-1646788715-------9997
No 192
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=98.62 E-value=3e-06 Score=64.10 Aligned_cols=191 Identities=17% Similarity=0.269 Sum_probs=112.6
Q ss_pred HHHHHHHHHCC--CCCCEEEE-CCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCH-HHHHHHHH
Q ss_conf 99999986226--77874896-6764116689999999985489883452014455404675306343123-78999999
Q gi|254780163|r 213 INRTIQILCRR--SKNNPLYV-GDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGD-FEERIKKI 288 (798)
Q Consensus 213 I~riiqIL~RR--~KNn~~lv-G~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~-fe~r~~~~ 288 (798)
.-+..+-+++. ...||+++ |++|+|||.+.++++..+.+.. .+.++.-++...+..- |-.- .+..+...
T Consensus 19 a~~~~~~i~~~~~~~~npl~i~G~~G~GKTHLLqA~~~~~~~~~-----~~~~v~yl~~~~~~~~--~~~~l~~~~~~~f 91 (219)
T pfam00308 19 AHAAALAVAEAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALRNF-----PNLRVVYLTSEEFLND--FVDALRDNKIEAF 91 (219)
T ss_pred HHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC-----CCCEEEEEEHHHHHHH--HHHHHHCCCHHHH
T ss_conf 99999999967587678269988999988899999999999849-----9982888439999998--8999981888899
Q ss_pred HHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECC-HHHHHHHHHCCHHHHHHC---EEEEE
Q ss_conf 98720389839997361663015544434477788887663026603887304-899999852011143200---14430
Q gi|254780163|r 289 VKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTT-YSEYRQFFEKDKALVRRF---QKIDV 364 (798)
Q Consensus 289 ~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~IgatT-~~ey~~~~e~d~al~rrF---~~i~v 364 (798)
.+.+.. --+|.||+||.+.|....+. -.-+++--...+|.--+|.+.. |.+.. .+.+| |..|| -.+.|
T Consensus 92 ~~~l~~--~d~l~iDDi~~l~~~~~~ee---~lf~l~N~~~~~~~~lllts~~~p~~l~-~~~~d--L~SRL~~g~~~~i 163 (219)
T pfam00308 92 KKSYRN--VDLLLIDDIQFLAGKEKTQE---EFFHTFNALHENNKQIVLTSDRPPKELE-GFEDR--LRSRFEWGLIIAI 163 (219)
T ss_pred HHHHHH--CCHHHHCCHHHHCCCHHHHH---HHHHHHHHHHHCCCEEEEECCCCCCCCC-CCCHH--HHHHHHCCEEEEC
T ss_conf 999763--23365223676568647899---9999999999729869997799810024-53277--9999868756611
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 6878689999998612766541035121117899999865420155564679889986533332
Q gi|254780163|r 365 SEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEAGASQI 428 (798)
Q Consensus 365 ~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea~a~~~ 428 (798)
.+|+.++-..||+. +-...++.++++++.+.+.-..|=++ .=+..||.-++..+
T Consensus 164 ~~pdd~~~~~iL~~----~a~~r~l~l~~~v~~yl~~r~~R~~r------~L~~~L~~L~~~~~ 217 (219)
T pfam00308 164 EPPDLETRLAILRK----KAEEENINIPNEVLNFIAQRITDNVR------ELEGALNRLLAFAS 217 (219)
T ss_pred CCCCHHHHHHHHHH----HHHHCCCCCCHHHHHHHHHHCCCCHH------HHHHHHHHHHHHHC
T ss_conf 69999999999999----99984999999999999984279899------99999999998550
No 193
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=1.5e-07 Score=73.43 Aligned_cols=196 Identities=19% Similarity=0.223 Sum_probs=123.5
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHCCCCCC-EEEECCCCCHHHHHHHHHHHHHHCCCC--CHH----------H--HEEE
Q ss_conf 754861122217899999999862267787-489667641166899999999854898--834----------5--2014
Q gi|254780163|r 198 VKKGKVDILVGRHEEINRTIQILCRRSKNN-PLYVGDPGVGKTAIAEGFAKQIVDGMV--PDI----------L--LGAR 262 (798)
Q Consensus 198 AreGKLDPVIGRd~EI~riiqIL~RR~KNn-~~lvG~~gvGktaive~la~~i~~~~v--p~~----------l--~~~~ 262 (798)
-|-..++-|||-+.-++-+..-|..-+=.+ -++-|.-|||||+|+.-||.-+.-.+- ... - +..-
T Consensus 10 ~rp~~f~~~vgq~~v~~~l~~a~~~~r~~haylf~g~rg~gktt~ari~ak~lnc~~~~~~~pcg~c~~c~~i~~g~~~d 89 (696)
T PRK06872 10 WRPKTFSEVVGQEHILTALSNGLKENRLHHAYLFSGTRGVGKTSIARLFAKGLNCVHGVTATPCGECENCKAIEEGNFID 89 (696)
T ss_pred HCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCC
T ss_conf 18875645238599999999999719863047511789888889999999986789999999788862257674478775
Q ss_pred EEEEEHHHHHCCCCCCCHHHHHHHHHHHHHC---CCCC-EEEEECCHHHHHCCCCCCCCCCCHHH-HHHHHHC--CCCEE
Q ss_conf 4554046753063431237899999998720---3898-39997361663015544434477788-8876630--26603
Q gi|254780163|r 263 IFSLDMGNLIAGTRYRGDFEERIKKIVKEIE---SYAN-AILYIDEIHTLVGAGSASGISVDASN-LLKPALS--SGAVR 335 (798)
Q Consensus 263 i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~---~~~~-~ilfideih~ligag~~~g~~~d~an-~lkP~L~--rg~~~ 335 (798)
++++|.++- + | =+.++.+++.+. ..++ -|..|||+|+|- -.+=| +|| -|. -.-++
T Consensus 90 ~~eidaas~---~---~--v~~~r~l~~~~~~~p~~~~~kvy~idevhmls---------~~~fnallk-tleepp~~v~ 151 (696)
T PRK06872 90 LIEIDAASR---T---K--VEDTRELLDNVQYKPVVGRFKVYLIDEVHMLS---------RHSFNALLK-TLEEPPEYVK 151 (696)
T ss_pred EEEEECCCC---C---C--HHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCC---------HHHHHHHHH-HHCCCCCCEE
T ss_conf 467505655---7---8--89999999845457767754799970054438---------999999987-5027975448
Q ss_pred EEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 88730489999985201114320014430687868999999861276654103512111789999986542015556467
Q gi|254780163|r 336 CIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDK 415 (798)
Q Consensus 336 ~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdk 415 (798)
+|-|||.- +|. .-.-|.|. +....+--+.++-..-|..+- ..-++.|.++||....+.+.--+.|
T Consensus 152 f~latt~~--~k~--p~tilsrc-~~f~~~~~~~~~i~~~l~~i~----~~e~~~~~~~al~~~a~~a~gs~rd------ 216 (696)
T PRK06872 152 FLLATTDP--QKL--PITILSRC-MQFHLKALDQTQIAQHLEFIL----TQENIPFESPALEKLAKAAQGSIRD------ 216 (696)
T ss_pred EEEECCCH--HHC--CHHHHHHH-HHEECCCCCHHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHCCCCHHH------
T ss_conf 99843863--227--48898766-530026899999999999999----9849977999999999975895677------
Q ss_pred HHHHHHHHHHH
Q ss_conf 98899865333
Q gi|254780163|r 416 AIDVIDEAGAS 426 (798)
Q Consensus 416 AidllDea~a~ 426 (798)
|+.|+|.|-|.
T Consensus 217 alsl~dqai~~ 227 (696)
T PRK06872 217 SLSLTDQAIAM 227 (696)
T ss_pred HHHHHHHHHHH
T ss_conf 88899999997
No 194
>PRK08770 DNA polymerase III subunits gamma and tau; Validated
Probab=98.60 E-value=4.4e-05 Score=55.66 Aligned_cols=40 Identities=8% Similarity=0.208 Sum_probs=20.6
Q ss_pred CHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 834520144554046753063431237899999998720389839997
Q gi|254780163|r 255 PDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYI 302 (798)
Q Consensus 255 p~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfi 302 (798)
++.-...+||-+|=--|++... ++.+++.++.-+.-|.||
T Consensus 114 ~p~~~~~kvy~idevhmls~~~--------fna~lktleepp~~v~f~ 153 (663)
T PRK08770 114 MPSRGKFKVYLIDEVHMLSKAA--------FNALLKTLEEPPEHVKFL 153 (663)
T ss_pred CCCCCCEEEEEEECHHHCCHHH--------HHHHHHHHCCCCCCEEEE
T ss_conf 8877743699970043328999--------999987402786442899
No 195
>KOG0732 consensus
Probab=98.60 E-value=6e-07 Score=69.07 Aligned_cols=140 Identities=27% Similarity=0.418 Sum_probs=95.5
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHH
Q ss_conf 74896676411668999999998548988345201445540467530634312378999999987203898399973616
Q gi|254780163|r 227 NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIH 306 (798)
Q Consensus 227 n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih 306 (798)
-+++-|+||.|||-++-.||--...++ +..-.|.-+.+.. =.|+.||-|+-++-+.+|+++....|.|.|||.
T Consensus 301 gvL~~GppGTGkTl~araLa~~~s~~~-----~kisffmrkgaD~--lskwvgEaERqlrllFeeA~k~qPSIIffdeId 373 (1080)
T KOG0732 301 GVLFHGPPGTGKTLMARALAAACSRGN-----RKISFFMRKGADC--LSKWVGEAERQLRLLFEEAQKTQPSIIFFDEID 373 (1080)
T ss_pred CEEECCCCCCCHHHHHHHHHHHHCCCC-----CCCCHHHHCCCHH--HCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 323028998725688886665405411-----0202443148443--325447577889988988744485177305556
Q ss_pred HHHCCCCCCCCCCC---HHHHH--HHHH-CCCCEEEEEECCHHHHHHHHHCCHHHHH--HCEE-EEECCCCHHHHHHHHH
Q ss_conf 63015544434477---78888--7663-0266038873048999998520111432--0014-4306878689999998
Q gi|254780163|r 307 TLVGAGSASGISVD---ASNLL--KPAL-SSGAVRCIGSTTYSEYRQFFEKDKALVR--RFQK-IDVSEPSIEDAIEIVK 377 (798)
Q Consensus 307 ~ligag~~~g~~~d---~an~l--kP~L-~rg~~~~IgatT~~ey~~~~e~d~al~r--rF~~-i~v~ep~~~~~~~iL~ 377 (798)
-+--.-++.-...- .+++| -+.| +||.+.+||||-...| -|+||-| ||.. ....=|+.+....||.
T Consensus 374 GlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda-----~dpaLRRPgrfdref~f~lp~~~ar~~Il~ 448 (1080)
T KOG0732 374 GLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDA-----IDPALRRPGRFDREFYFPLPDVDARAKILD 448 (1080)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCC-----CCHHHCCCCCCCEEEEEECCCHHHHHHHHH
T ss_conf 646565366777445677778876047777786589715678332-----465442886665257503786678889998
Q ss_pred H
Q ss_conf 6
Q gi|254780163|r 378 G 378 (798)
Q Consensus 378 ~ 378 (798)
-
T Consensus 449 I 449 (1080)
T KOG0732 449 I 449 (1080)
T ss_pred H
T ss_conf 7
No 196
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.58 E-value=1.7e-05 Score=58.65 Aligned_cols=141 Identities=16% Similarity=0.271 Sum_probs=74.2
Q ss_pred EEEECCHHHHH-C----------------CCCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHC--
Q ss_conf 99973616630-1----------------5544434477788887663026603887304899999852011143200--
Q gi|254780163|r 299 ILYIDEIHTLV-G----------------AGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRF-- 359 (798)
Q Consensus 299 ilfideih~li-g----------------ag~~~g~~~d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF-- 359 (798)
+||||||.+|= + .|.++.++ +.+++|-=---++++|++++++-|+.. .+||..|.
T Consensus 229 vL~IDei~~L~~~~q~~Ll~alq~~k~~I~g~~e~Ss---gA~v~tepvP~Df~lV~aGn~d~~~~m---~palrsri~g 302 (637)
T PRK13765 229 VLFIDEINTLRLESQQSLLTAMQEKKYPITGQSERSS---GAMVRTEPVPCDFIMVAAGNLDAIENM---HPALRSRIRG 302 (637)
T ss_pred EEEEEHHHHCCHHHHHHHHHHHHCCCEECCCCCCCCC---CCCCCCCCCCEEEEEEEECCHHHHHHC---CHHHHHHHHC
T ss_conf 6998445647988999999999659153236886667---762578986613699995372766643---9988865104
Q ss_pred --EEEEECC---CCHHHHHHHHHHHHHHHHHHCCC-EECCHHHHHHHHHHHHHCCCC-CCH---HHHHHHHHHHHHHHHH
Q ss_conf --1443068---78689999998612766541035-121117899999865420155-564---6798899865333321
Q gi|254780163|r 360 --QKIDVSE---PSIEDAIEIVKGIKPYFEEHHQL-RYSKEAIRAAVQLSVRHFTSR-KLP---DKAIDVIDEAGASQIL 429 (798)
Q Consensus 360 --~~i~v~e---p~~~~~~~iL~~~~~~ye~~h~v-~~~~~al~~av~ls~ryi~~r-~lP---dkAidllDea~a~~~~ 429 (798)
-.|..+. -+.+-..++++=+....+..-++ .++.+|+...++.+.|.--++ .|- ..-.+|+-||+..++
T Consensus 303 ~gyev~~~~~m~dt~enr~k~arfiaqev~~dg~iPhfdr~AVaeII~eA~R~AG~k~kLTLrLReL~~LIReAgdiA~- 381 (637)
T PRK13765 303 YGYEVYMNDTMEDTPENRKKLVRFVAQEVKRDGKIPHFDREAVEEIIREARRRAGRKGHLTLKLRDLGGLVRVAGDIAR- 381 (637)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH-
T ss_conf 7749982356778788999999999999974388899998999999999997405456630528988749999889999-
Q ss_pred HHHHHHHCCCCHHHHHHHHH
Q ss_conf 14432211365789998663
Q gi|254780163|r 430 QPLSKRRKFITEKDIKKTIA 449 (798)
Q Consensus 430 ~~~~~~~~~~~~~~i~~~~~ 449 (798)
.+.+..|+.+||.+...
T Consensus 382 ---~eg~~~Vta~hV~~A~~ 398 (637)
T PRK13765 382 ---SEGADLVTAEHVLEAKK 398 (637)
T ss_pred ---HCCCCCCCHHHHHHHHH
T ss_conf ---75999664999999999
No 197
>KOG0729 consensus
Probab=98.58 E-value=8.4e-07 Score=68.04 Aligned_cols=133 Identities=25% Similarity=0.416 Sum_probs=62.4
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHH
Q ss_conf 74896676411668999999998548988345201445540467530634312378999999987203898399973616
Q gi|254780163|r 227 NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIH 306 (798)
Q Consensus 227 n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih 306 (798)
.++|-|+||.|||-.+..+|.|- +..++.+=.+.|+ .||.||=-.-++.++.-++..+..|+|+|||.
T Consensus 213 GvllyGPPGtGKTL~ARAVANRT----------dAcFIRViGSELV--QKYvGEGARMVRElFeMAr~KKACiiFFDEiD 280 (435)
T KOG0729 213 GVLLYGPPGTGKTLCARAVANRT----------DACFIRVIGSELV--QKYVGEGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred CEEEECCCCCCHHHHHHHHHCCC----------CCEEEEEHHHHHH--HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 33786899986108999874566----------7458763118999--99862468999999998523652799841010
Q ss_pred HHHCCCCCCCCC---------CCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHH--HC-EEEEECCCCHHHHHH
Q ss_conf 630155444344---------777888876630266038873048999998520111432--00-144306878689999
Q gi|254780163|r 307 TLVGAGSASGIS---------VDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVR--RF-QKIDVSEPSIEDAIE 374 (798)
Q Consensus 307 ~ligag~~~g~~---------~d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~r--rF-~~i~v~ep~~~~~~~ 374 (798)
.+=||---.|.. +..-|-|--.=.||.|++.-||.--. --|+||.| |. .+|...=|+.+--..
T Consensus 281 AiGGaRFDDg~ggDNEVQRTMLEli~QLDGFDpRGNIKVlmATNRPd-----tLDpALlRPGRlDRKVEF~LPDlegR~~ 355 (435)
T KOG0729 281 AIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPD-----TLDPALLRPGRLDRKVEFGLPDLEGRTH 355 (435)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCC-----CCCHHHCCCCCCCCCEECCCCCCCCCCE
T ss_conf 22672035788872799999999998603778888758986348988-----7687662876423112105876235512
Q ss_pred HH
Q ss_conf 99
Q gi|254780163|r 375 IV 376 (798)
Q Consensus 375 iL 376 (798)
|+
T Consensus 356 I~ 357 (435)
T KOG0729 356 IF 357 (435)
T ss_pred EE
T ss_conf 57
No 198
>KOG0738 consensus
Probab=98.58 E-value=6.2e-07 Score=68.97 Aligned_cols=108 Identities=27% Similarity=0.385 Sum_probs=72.5
Q ss_pred HHCHHHHHHHHHHHHHH------HHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHH
Q ss_conf 53458999999999877------520445657874068861432003889999987304773377206886124653011
Q gi|254780163|r 479 VYGQEEAIKKLSSSIKI------ARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRL 552 (798)
Q Consensus 479 v~GQ~~ai~~v~~~i~~------~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~L 552 (798)
|.|-.+|..-+-+|+.. ...|+.. |--..|++||+|+|||.|||++|-..+.-|..+--|.. +||
T Consensus 214 Iagl~~AK~lL~EAVvlPi~mPe~F~Girr---PWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstl-----tSK- 284 (491)
T KOG0738 214 IAGLHEAKKLLKEAVVLPIWMPEFFKGIRR---PWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTL-----TSK- 284 (491)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEECHHHH-----HHH-
T ss_conf 316499999999887544424888742446---53000556799974789999998861672787402456-----555-
Q ss_pred CCCCCHHCCCCCC--CCCCHHHHHCCCEEEEECCHHH------------CCHHHHHHHHHHHH
Q ss_conf 0478000256444--3100355515851777404455------------02899999999877
Q gi|254780163|r 553 IGAPPGYVGFGQG--GILADSVDQNPYSVVLLDEIEK------------SHPDVLNILLQIMD 601 (798)
Q Consensus 553 iGappGYvG~~eg--g~Lte~vr~~P~sVvl~DEiEK------------Ah~~v~~~llqild 601 (798)
|-|-.|- -+|.|--|..--|+|++|||+- |...|-+=||+-||
T Consensus 285 ------wRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmD 341 (491)
T KOG0738 285 ------WRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMD 341 (491)
T ss_pred ------HCCCHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf ------325269999999999987488535335677887257986503678888889999863
No 199
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.58 E-value=6.8e-05 Score=54.32 Aligned_cols=40 Identities=8% Similarity=0.227 Sum_probs=23.9
Q ss_pred CHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 834520144554046753063431237899999998720389839997
Q gi|254780163|r 255 PDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYI 302 (798)
Q Consensus 255 p~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfi 302 (798)
.+.-..++||-+|=--|++... +..+++.++..+.-+.||
T Consensus 114 ~p~~~r~kvyiidEvhmls~~a--------fnalLKtlEePp~hv~fi 153 (643)
T PRK07994 114 APARGRFKVYLIDEVHMLSRHS--------FNALLKTLEEPPAHVKFL 153 (643)
T ss_pred CCCCCCEEEEEEECHHHCCHHH--------HHHHHHHHCCCCHHCEEE
T ss_conf 8877853699972210158999--------999998623786100899
No 200
>pfam05673 DUF815 Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.
Probab=98.57 E-value=1.7e-05 Score=58.66 Aligned_cols=159 Identities=23% Similarity=0.352 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHH----HHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCH
Q ss_conf 22217899999999----86226778748966764116689999999985489883452014455404675306343123
Q gi|254780163|r 205 ILVGRHEEINRTIQ----ILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGD 280 (798)
Q Consensus 205 PVIGRd~EI~riiq----IL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~ 280 (798)
-++|=|.+.+.+++ -+....-||++|-|+.|.||+++|.++...... ++.|+++++-..|
T Consensus 29 ~L~Gie~Qk~~l~~NT~~F~~G~pAnnvLLwG~RGtGKSSlVKall~~~~~-------~gLrlIEv~k~~L--------- 92 (248)
T pfam05673 29 DLVGIDRQKEALLRNTEQFLAGLPANNVLLWGARGTGKSSLVKALLNEYAD-------QGLRLIEVDKDDL--------- 92 (248)
T ss_pred HHCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH-------CCCEEEEECHHHH---------
T ss_conf 934939999999999999980898613676768989888999999998631-------4956999878887---------
Q ss_pred HHHHHHHHHHHHCCCC-CEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCC-----EEEEEECCHH-----HH-H--
Q ss_conf 7899999998720389-8399973616630155444344777888876630266-----0388730489-----99-9--
Q gi|254780163|r 281 FEERIKKIVKEIESYA-NAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGA-----VRCIGSTTYS-----EY-R-- 346 (798)
Q Consensus 281 fe~r~~~~~~~~~~~~-~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~-----~~~IgatT~~-----ey-~-- 346 (798)
.-|-.|++.++..+ +-|||||++- =+.+ -+--..||..|.-|- =-+|-||+.- |+ .
T Consensus 93 --~~Lp~i~~~l~~~~~kFIiF~DDLS-------Fe~~-d~~yk~LKs~LeG~l~~~p~NvliYaTSNRRHLi~e~~~d~ 162 (248)
T pfam05673 93 --GDLPDIVDLLRGRPYRFILFCDDLS-------FEEG-ESSYKALKSVLEGGLEARPDNVLIYATSNRRHLIPEYMSDN 162 (248)
T ss_pred --CCHHHHHHHHHCCCCCEEEEECCCC-------CCCC-CHHHHHHHHHHCCCCCCCCCEEEEEEECCCHHCCCHHHCCC
T ss_conf --2199999999649975799963557-------6789-73699999996576446887389998427000363332347
Q ss_pred ---------HHHHCCHHHHHHCE-EEEECCCCHHHHHHHHHHHHHHHHHHCCCEECC
Q ss_conf ---------98520111432001-443068786899999986127665410351211
Q gi|254780163|r 347 ---------QFFEKDKALVRRFQ-KIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSK 393 (798)
Q Consensus 347 ---------~~~e~d~al~rrF~-~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~ 393 (798)
..+|---+|..||- .|.-.+|+.++=+.|.+. |-+++++.+..
T Consensus 163 ~~~~ei~~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~----~~~~~~~~~~~ 215 (248)
T pfam05673 163 EGDGEIHPGDAVEEKLSLSDRFGLWLGFHPFDQDEYLAIVRG----YAARLGLPLDE 215 (248)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHH----HHHHCCCCCCH
T ss_conf 774436725577745348986771785079999999999999----99982999998
No 201
>PRK08903 hypothetical protein; Validated
Probab=98.56 E-value=5.3e-06 Score=62.28 Aligned_cols=45 Identities=22% Similarity=0.182 Sum_probs=21.3
Q ss_pred HHHHCE---EEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHH
Q ss_conf 432001---4430687868999999861276654103512111789999986
Q gi|254780163|r 355 LVRRFQ---KIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLS 403 (798)
Q Consensus 355 l~rrF~---~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls 403 (798)
|..||. .+.+.+|+.+.-..||+.. -...|+.++++++.+.+.-.
T Consensus 142 L~SRl~~gl~~~i~~pdde~~~~iL~~~----a~~rgl~l~~~v~~yl~~r~ 189 (227)
T PRK08903 142 LRTRLGWGLVYEVKPLSDEDKIAALKAA----AAERGLQLADEVPDYLLTHF 189 (227)
T ss_pred HHHHHHCCCEEEEECCCHHHHHHHHHHH----HHHCCCCCCHHHHHHHHHHH
T ss_conf 9999938973899797999999999999----99629999889999999983
No 202
>PRK08116 hypothetical protein; Validated
Probab=98.56 E-value=1.5e-06 Score=66.27 Aligned_cols=165 Identities=21% Similarity=0.288 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC---CCCEEEEEHHHHHCCCCCCHHCCCCC
Q ss_conf 458999999999877520445657874068861432003889999987304---77337720688612465301104780
Q gi|254780163|r 481 GQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL---GVQLLRFDMSEYMERHAVSRLIGAPP 557 (798)
Q Consensus 481 GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~---~~~lir~dmsey~e~~~vs~LiGapp 557 (798)
||..|.....+-+.... -... .+. .++|.||+|+|||.||-++|..+ +...+-++.+++.+.-..+
T Consensus 86 ~~~~a~~~a~~Y~~~f~-~~~~--~~~-GLll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~~~~ll~~lk~~------- 154 (262)
T PRK08116 86 GSEKAYKVAVKYVKKFE-EMKK--ESV-GLLLWGSPGNGKTYLAAAIANELIEKGVPVVFVNVPELLNRIKST------- 154 (262)
T ss_pred CHHHHHHHHHHHHHHHH-HHCC--CCC-EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHH-------
T ss_conf 25999999999999898-7364--686-189989899989999999999999879939998899999999999-------
Q ss_pred HHCCCCCCC-----CCCHHHHHCCCEEEEECCH--HHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHH
Q ss_conf 002564443-----1003555158517774044--550289999999987775021779977612542999942421455
Q gi|254780163|r 558 GYVGFGQGG-----ILADSVDQNPYSVVLLDEI--EKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALE 630 (798)
Q Consensus 558 GYvG~~egg-----~Lte~vr~~P~sVvl~DEi--EKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~ 630 (798)
|..++ .+.+.+. -.-|+++|++ |+..+-+.+.|++|++. |...+. -+|.|||+.-++
T Consensus 155 ----~~~~~~~~~~e~l~~l~--~~dLLIiDDlG~e~~t~w~~e~lf~IIn~-Ry~~~k---------ptIiTTNl~~~e 218 (262)
T PRK08116 155 ----YNSEGKEDENEIIRALD--NADLLILDDLGAEKDTEWVREKLYNIIDS-RYRKGL---------PTIFTTNLSLEE 218 (262)
T ss_pred ----HHCCCCHHHHHHHHHHH--CCCEEEEEHHCCCCCCHHHHHHHHHHHHH-HHHCCC---------CEEEECCCCHHH
T ss_conf ----86356101999999861--29989983221456987899999999999-997699---------989987999999
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHH-HHHHHHHHHHHHH
Q ss_conf 3303689882111488999998728878817768289628899999999-9999999999999
Q gi|254780163|r 631 MSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQ-VVHKFIMKLELQL 692 (798)
Q Consensus 631 ~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~-i~~~~l~~l~~~l 692 (798)
+.+ .|.+-.+.||-+....-.++.++.++ ++...+..+.+.|
T Consensus 219 L~~--------------------~~~~Ri~sRl~e~~~~v~~~G~d~R~~~a~~k~~~~~~~l 261 (262)
T PRK08116 219 LKN--------------------QYGKRTYSRILEMCTPVKNEGKSYRREIAKEKLERLKELL 261 (262)
T ss_pred HHH--------------------HHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 999--------------------8637999999867789985177887999999999999860
No 203
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=6.2e-05 Score=54.61 Aligned_cols=36 Identities=11% Similarity=0.297 Sum_probs=16.0
Q ss_pred HEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 20144554046753063431237899999998720389839997
Q gi|254780163|r 259 LGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYI 302 (798)
Q Consensus 259 ~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfi 302 (798)
..++||-+|=--|++... +..+++.++.-+.-+.||
T Consensus 123 ~~~KvyiiDevhmls~~a--------fnalLKtlEePP~hv~Fi 158 (721)
T PRK12323 123 GRFKVYMIDEVHMLTNHA--------FNAMLKTLEEPPPHVKFI 158 (721)
T ss_pred CCEEEEEEECCCCCCHHH--------HHHHHHHHCCCCCCEEEE
T ss_conf 644699985400058999--------999998401797553899
No 204
>PRK05642 DNA replication initiation factor; Validated
Probab=98.55 E-value=1.3e-05 Score=59.50 Aligned_cols=151 Identities=17% Similarity=0.248 Sum_probs=68.0
Q ss_pred CCEE-EECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 8748-966764116689999999985489883452014455404675306343123789999999872038983999736
Q gi|254780163|r 226 NNPL-YVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDE 304 (798)
Q Consensus 226 Nn~~-lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfide 304 (798)
+||+ |.|++|.|||.+.+..+..+.+. +.+++.+++..+.. ..-.+++.++.. + ++.||+
T Consensus 45 ~~~l~i~G~~G~GKTHLL~A~~~~~~~~-------~~~~~yl~~~~~~~----------~~~~~~~~l~~~-d-~l~IDD 105 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR-------GEPAVYLPLAELLD----------RGPELLDNLEQY-E-LVCIDD 105 (234)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHC-------CCCEEEEEHHHHHH----------HHHHHHHHHHHC-C-EEEEEC
T ss_conf 8838998899998899999999999807-------99679978999875----------449998624227-9-898936
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECC-HHHHHHHHHCCHHHHHHCE---EEEECCCCHHHHHHHHHHHH
Q ss_conf 1663015544434477788887663026603887304-8999998520111432001---44306878689999998612
Q gi|254780163|r 305 IHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTT-YSEYRQFFEKDKALVRRFQ---KIDVSEPSIEDAIEIVKGIK 380 (798)
Q Consensus 305 ih~ligag~~~g~~~d~an~lkP~L~rg~~~~IgatT-~~ey~~~~e~d~al~rrF~---~i~v~ep~~~~~~~iL~~~~ 380 (798)
||.|.|-...+. -.-+++--...+|.-=++.++. |.+.. ...+ -|..||+ .+++.+|+.++-+.||+...
T Consensus 106 i~~i~g~~~~e~---~lF~l~N~~~~~~~~llits~~~P~~l~-~~l~--DL~SRl~~~~~~~i~~l~d~~~~~iL~~~a 179 (234)
T PRK05642 106 LDVIAGKADWEE---ALFHLFNRLRDSGRRLLLAASKSPRELP-VKLP--DLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred HHHHCCCHHHHH---HHHHHHHHHHHCCCEEEEECCCCHHHHC-CCHH--HHHHHHHCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 455468859999---9999999999839959995787955523-0016--799999578127514899899999999997
Q ss_pred HHHHHHCCCEECCHHHHHHHHHHHH
Q ss_conf 7665410351211178999998654
Q gi|254780163|r 381 PYFEEHHQLRYSKEAIRAAVQLSVR 405 (798)
Q Consensus 381 ~~ye~~h~v~~~~~al~~av~ls~r 405 (798)
...|+.++++++.+.++-..|
T Consensus 180 ----~~rgi~l~~~v~~yl~~r~~R 200 (234)
T PRK05642 180 ----SRRGLHLTDEVGHFILTRGTR 200 (234)
T ss_pred ----HHCCCCCCHHHHHHHHHHCCC
T ss_conf ----754689998999999997358
No 205
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.55 E-value=2.7e-06 Score=64.33 Aligned_cols=49 Identities=22% Similarity=0.457 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 486112221789999999986226778748966764116689999999985
Q gi|254780163|r 200 KGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIV 250 (798)
Q Consensus 200 eGKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~ 250 (798)
..-+|-|||-|+-++-+.-..--|+ |.+|||+||+||+-++..+++.+-
T Consensus 27 ~~lidqVIGQe~Av~~i~~Aa~qrr--hvlliG~PGtGKSmlakam~elLp 75 (637)
T PRK13765 27 KLLIDQVIGQEHAVEVIKKAAKQRR--HVMLIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHC--CEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 8523324571999999999998437--389868999879999999997579
No 206
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=1.3e-05 Score=59.46 Aligned_cols=184 Identities=19% Similarity=0.257 Sum_probs=120.7
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCC-EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHH
Q ss_conf 1122217899999999862267787-489667641166899999999854898834520144554046753063431237
Q gi|254780163|r 203 VDILVGRHEEINRTIQILCRRSKNN-PLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDF 281 (798)
Q Consensus 203 LDPVIGRd~EI~riiqIL~RR~KNn-~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~f 281 (798)
++-|||-+.-++++..-+...+=.+ -++.|++|||||+.+..+|+.+....-...- .-++.++.. .+... |
T Consensus 3 f~~iiGq~~i~~~L~~~i~~~rl~HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~~~~--~D~~~~~~~---~~~~I-~-- 74 (313)
T PRK05564 3 FRTIIGHENIKNRIDNSIIKGKFSHASLIVGEDGIGKSILAKEIANKILGKSEQREY--VDIIEYKPI---NKKSI-G-- 74 (313)
T ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC--CCEEEEECC---CCCCC-C--
T ss_conf 323268299999999999879987504327999850999999999998289977889--865886332---25699-9--
Q ss_pred HHHHHHHHHHHCC----CCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHCCHHH
Q ss_conf 8999999987203----898399973616630155444344777888876630--2660388730489999985201114
Q gi|254780163|r 282 EERIKKIVKEIES----YANAILYIDEIHTLVGAGSASGISVDASNLLKPALS--SGAVRCIGSTTYSEYRQFFEKDKAL 355 (798)
Q Consensus 282 e~r~~~~~~~~~~----~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~--rg~~~~IgatT~~ey~~~~e~d~al 355 (798)
=+.++.+++.+.. .+.-|.+||+.|++ +..|+|-|-=.|. -+..-+|=+||..+ +. =+-.
T Consensus 75 vd~IR~l~~~~~~~p~~g~~KV~II~~ae~m---------~~~AaNALLKtLEEPP~~t~fIL~t~~~~--~l---LpTI 140 (313)
T PRK05564 75 VDDIRNIIEEVNKKPYEGDKKVIIIYKSEKM---------TEQAQNAFLKTIEEPPKGVFIILLCENLE--QI---LDTI 140 (313)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCHHHH---------CHHHHHHHHHCCCCCCCCEEEEEEECCHH--HC---CCHH
T ss_conf 8999999999840862589569998077775---------89999998455036899858998649835--47---5778
Q ss_pred HHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 3200144306878689999998612766541035121117899999865420155564679889986
Q gi|254780163|r 356 VRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDE 422 (798)
Q Consensus 356 ~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDe 422 (798)
-.|-|.+.+..++.++....|.. .+++ .+.+....++.+|. -.|++|.+++..
T Consensus 141 ~SRCQ~~~f~~l~~~~i~~~L~~------~~~~--~~~~~~~~~~~~s~------G~~~~a~~~~~~ 193 (313)
T PRK05564 141 KSRCQIYKLNRLSKEDIEKFISY------KYND--IDEENKNSAIAFSD------GIPGKVEKFIED 193 (313)
T ss_pred HCCCEEEECCCCCHHHHHHHHHH------HCCC--CCHHHHHHHHHHCC------CCHHHHHHHHHH
T ss_conf 70653566899899999999998------6258--99999999999829------987999998405
No 207
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.54 E-value=1e-05 Score=60.16 Aligned_cols=255 Identities=20% Similarity=0.214 Sum_probs=150.6
Q ss_pred HHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCC-------EEEEECCCCHHHHHHHHHHHHHCCCCEEEEEH
Q ss_conf 42100002466534589999999998775204456578740-------68861432003889999987304773377206
Q gi|254780163|r 468 LSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIG-------CYVFSGPTGVGKTEISKQLAFALGVQLLRFDM 540 (798)
Q Consensus 468 l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g-------~flf~GptGvGKTelak~la~~~~~~lir~dm 540 (798)
...|-+.+.-.|+|.+..-++++-.+. |=....-|-| ..|++|-+|+||+.|-|.++.....+.-.-
T Consensus 277 ~~~l~~SiaPsIyG~e~VKkAilLqLf----gGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vyts-- 350 (682)
T COG1241 277 YDILIKSIAPSIYGHEDVKKAILLQLF----GGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTS-- 350 (682)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHC----CCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEC--
T ss_conf 999999741510381999999999960----89766479986202422699817982519999999886488407972--
Q ss_pred HHHHCCCCCCHHCCC---CCHHCC--CCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECC
Q ss_conf 886124653011047---800025--644431003555158517774044550289999999987775021779977612
Q gi|254780163|r 541 SEYMERHAVSRLIGA---PPGYVG--FGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISF 615 (798)
Q Consensus 541 sey~e~~~vs~LiGa---ppGYvG--~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf 615 (798)
-...|...|..| -|. .| +=|+|-|.-|= .+|+..||++|..-.-.+.+...|+..+++=+
T Consensus 351 ---gkgss~~GLTAav~rd~~-tge~~LeaGALVlAD----~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIa------- 415 (682)
T COG1241 351 ---GKGSSAAGLTAAVVRDKV-TGEWVLEAGALVLAD----GGVCCIDEFDKMNEEDRVAIHEAMEQQTISIA------- 415 (682)
T ss_pred ---CCCCCCCCCEEEEEECCC-CCEEEEECCEEEEEC----CCEEEEEECCCCCHHHHHHHHHHHHHCEEEEC-------
T ss_conf ---641254573069997067-760788677799924----97799970567776789999999875275120-------
Q ss_pred CCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECC-CCCHH----HHHHHHHHHH-----
Q ss_conf 5429999424214553303689882111488999998728878817768289628-89999----9999999999-----
Q gi|254780163|r 616 RNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFF-PLSSD----IIRQVVHKFI----- 685 (798)
Q Consensus 616 ~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~-~l~~~----~~~~i~~~~l----- 685 (798)
..=|+-|=|+-+..++..+..|+.-.......+- -.|+|.||.|+|-|++.. ..+++ -...|++...
T Consensus 416 -KAGI~atLnARcsvLAAaNP~~Gryd~~~~~~en--I~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~ 492 (682)
T COG1241 416 -KAGITATLNARCSVLAAANPKFGRYDPKKTVAEN--INLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPE 492 (682)
T ss_pred -CCCEEEECCHHHHHHHHHCCCCCCCCCCCCHHHH--CCCCHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf -5542541114444566518877767999997885--5898357751775477057888533599999999986345653
Q ss_pred ---------------HHHHH---HHHHCCCEEEECHHHHHHHHHCCCCCC-------------CCCHHHHHHHHHHHHHH
Q ss_conf ---------------99999---998669889998899999997189810-------------15326799999862359
Q gi|254780163|r 686 ---------------MKLEL---QLQEKGISFHFSEEVINWLVSHGYDVK-------------MGARPLERIIKEHVKVP 734 (798)
Q Consensus 686 ---------------~~l~~---~l~~~~i~l~~~~~~~~~l~~~~~~~~-------------~GAR~l~r~i~~~i~~~ 734 (798)
-++.+ ..+++.+.-.+++++.+.|.+.--+.. .-+|.|..+|+ +...
T Consensus 493 ~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiR--LaeA 570 (682)
T COG1241 493 ETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIR--LAEA 570 (682)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH--HHHH
T ss_conf 22333322222346589999999987505896128999999999998765201223456754561999999999--9999
Q ss_pred HHHHHHCCCCCCCC
Q ss_conf 99999629676888
Q gi|254780163|r 735 LADEILFGKLKKGG 748 (798)
Q Consensus 735 la~~il~~~~~~g~ 748 (798)
+|.+=|+..+.+.+
T Consensus 571 ~Ak~rLS~~V~~eD 584 (682)
T COG1241 571 HAKMRLSDVVEEED 584 (682)
T ss_pred HHHHHCCCCCCHHH
T ss_conf 88654447778899
No 208
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=98.53 E-value=1.3e-05 Score=59.38 Aligned_cols=207 Identities=24% Similarity=0.304 Sum_probs=139.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCEE-EECCCCCHHHHHHHHHHHHHHCCCCCHH--HHEE------------EEEEE
Q ss_conf 6112221789999999986226778748-9667641166899999999854898834--5201------------44554
Q gi|254780163|r 202 KVDILVGRHEEINRTIQILCRRSKNNPL-YVGDPGVGKTAIAEGFAKQIVDGMVPDI--LLGA------------RIFSL 266 (798)
Q Consensus 202 KLDPVIGRd~EI~riiqIL~RR~KNn~~-lvG~~gvGktaive~la~~i~~~~vp~~--l~~~------------~i~~l 266 (798)
.++=|||=|-=++-+...|-..+=+..- +-|+=|||||+++-=||.-+--. -|.. =..+ -|+++
T Consensus 12 ~F~d~~GQ~~iv~tL~NAi~~~ri~HAYLF~GpRGtGKTS~ARIfAKaLNC~-~~~~~PCn~C~~C~~i~~g~~~DviEi 90 (363)
T TIGR02397 12 TFEDVIGQEHIVKTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ-GPDGEPCNECESCKEINSGSSLDVIEI 90 (363)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHCCCCCCEEEE
T ss_conf 6110235179999999999718966234502859976355899999986588-787787777502277652898666886
Q ss_pred EHHHHHCCCCCCCHHHHHHHHHHHHHCCCC---C-EEEEECCHHHHHCCCCCCCCCCCHHH-HHHHHHCC--CCEEEEEE
Q ss_conf 046753063431237899999998720389---8-39997361663015544434477788-88766302--66038873
Q gi|254780163|r 267 DMGNLIAGTRYRGDFEERIKKIVKEIESYA---N-AILYIDEIHTLVGAGSASGISVDASN-LLKPALSS--GAVRCIGS 339 (798)
Q Consensus 267 d~~~l~ag~~~rg~fe~r~~~~~~~~~~~~---~-~ilfideih~ligag~~~g~~~d~an-~lkP~L~r--g~~~~Iga 339 (798)
| ||+.+|= +-++.|++.+.=.| . =|--|||+||| |..|=| +|| -|+. --+.+|=|
T Consensus 91 D------AASN~gV--D~IR~l~e~v~y~P~~~kYKvYIIDEVHML---------S~~AFNALLK-TLEEPP~hV~FIlA 152 (363)
T TIGR02397 91 D------AASNNGV--DDIRELRENVKYAPSKGKYKVYIIDEVHML---------SKSAFNALLK-TLEEPPEHVVFILA 152 (363)
T ss_pred C------CCCCCCH--HHHHHHHHHHCCCCCCCCCCEEEEECCCCC---------CHHHHHHHHH-HHCCCCCCEEEEEE
T ss_conf 4------8656878--899999873036875544335887323028---------6568999876-52279876288873
Q ss_pred CCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 04899999852011143200144306878689999998612766541035121117899999865420155564679889
Q gi|254780163|r 340 TTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDV 419 (798)
Q Consensus 340 tT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidl 419 (798)
||. ++|.- ..=|.| =|.-.-+--+.++-+.-|+.+...= ++.|.++||...++.|+==+.| |..|
T Consensus 153 TTE--~~KiP--~TIlSR-CQrF~Fk~i~~~~i~~~L~~I~~~E----~I~~e~~AL~~IA~~a~GS~RD------Alsl 217 (363)
T TIGR02397 153 TTE--PHKIP--ATILSR-CQRFDFKRIPLEDIVERLKKILDKE----GIKIEDEALELIARAADGSMRD------ALSL 217 (363)
T ss_pred CCC--HHHCC--CCCEEE-CEEECCCCCCHHHHHHHHHHHHHHH----CCCCCHHHHHHHHHHCCCCCCH------HHHH
T ss_conf 487--11205--540210-0031267899899999999999870----8831778999999962896106------8899
Q ss_pred HHHHHHHHHHHHHHHH-HCCCCHHHHHHHH
Q ss_conf 9865333321144322-1136578999866
Q gi|254780163|r 420 IDEAGASQILQPLSKR-RKFITEKDIKKTI 448 (798)
Q Consensus 420 lDea~a~~~~~~~~~~-~~~~~~~~i~~~~ 448 (798)
||.+-+.. .. ...|+.++|.+++
T Consensus 218 lDQ~~~~~------~~~DG~i~~~~v~~~l 241 (363)
T TIGR02397 218 LDQAISFG------NGSDGKITYEDVNEML 241 (363)
T ss_pred HHHHHHHC------CCCCCCCCHHHHHHHH
T ss_conf 99999826------8878865789999983
No 209
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=2.4e-05 Score=57.60 Aligned_cols=43 Identities=14% Similarity=0.339 Sum_probs=28.6
Q ss_pred HHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE---CCHH
Q ss_conf 34520144554046753063431237899999998720389839997---3616
Q gi|254780163|r 256 DILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYI---DEIH 306 (798)
Q Consensus 256 ~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfi---deih 306 (798)
+.-.-++||-+|=--|++-.. +.++++.++..+.-+.|| -|+|
T Consensus 127 p~~~~~kv~iidevhmls~~a--------fnallktleepp~~~~fi~att~~~ 172 (600)
T PRK09111 127 PVSARYKVYIIDEVHMLSTAA--------FNALLKTLEEPPPHVKFIFATTEIR 172 (600)
T ss_pred CCCCCEEEEEEECCCCCCHHH--------HHHHHHHHHCCCCCEEEEEECCCHH
T ss_conf 877754699960011057999--------9999987625986549999628534
No 210
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=9.4e-05 Score=53.31 Aligned_cols=36 Identities=8% Similarity=0.281 Sum_probs=19.6
Q ss_pred HEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 20144554046753063431237899999998720389839997
Q gi|254780163|r 259 LGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYI 302 (798)
Q Consensus 259 ~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfi 302 (798)
..++||-+|=--|++... +..+++.++.-+.-+.||
T Consensus 118 ~~~kvy~idevhmls~~~--------fnallktleepp~~v~f~ 153 (696)
T PRK06872 118 GRFKVYLIDEVHMLSRHS--------FNALLKTLEEPPEYVKFL 153 (696)
T ss_pred CCEEEEEEEHHHHCCHHH--------HHHHHHHHCCCCCCEEEE
T ss_conf 754799970054438999--------999987502797544899
No 211
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF; InterPro: IPR014317 Members of this protein are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, found in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol and filamentous phage infection..
Probab=98.52 E-value=2.1e-06 Score=65.20 Aligned_cols=219 Identities=21% Similarity=0.346 Sum_probs=167.1
Q ss_pred HHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC---CCCEEEEEHHHHHCCCCCCHHCCC
Q ss_conf 53458999999999877520445657874068861432003889999987304---773377206886124653011047
Q gi|254780163|r 479 VYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL---GVQLLRFDMSEYMERHAVSRLIGA 555 (798)
Q Consensus 479 v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~---~~~lir~dmsey~e~~~vs~LiGa 555 (798)
+|||.+|--.|.+.+-+ |.+=+||+ |.+|==|+||=-.|..|.|-+ +.++|.+||+--.|.===|-|.|=
T Consensus 1 liG~S~aFL~vLeqvS~----lA~l~rPV---LiiGERGTGKELiA~RLHyLS~RW~~Plv~LNCAALse~LldSELFGH 73 (349)
T TIGR02974 1 LIGESNAFLEVLEQVSR----LAPLDRPV---LIIGERGTGKELIAARLHYLSKRWQQPLVKLNCAALSENLLDSELFGH 73 (349)
T ss_pred CCCCCHHHHHHHHHHHH----CCCCCCCE---EEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 98872789999998751----04678866---886146746899998853324655488626610127825555665310
Q ss_pred CCHHCCCCCCCCCCHHHHHCCC-------EEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCH
Q ss_conf 8000256444310035551585-------177740445502899999999877750217799776125429999424214
Q gi|254780163|r 556 PPGYVGFGQGGILADSVDQNPY-------SVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGA 628 (798)
Q Consensus 556 ppGYvG~~egg~Lte~vr~~P~-------sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~ 628 (798)
|.|-.|-|-++|+= .=++||||=.|...|+.=||-|.++|.+.==-|.+.==.|+=||+-||.-=
T Consensus 74 --------EaGAFTGA~~rh~GRFERAdGGTLFLDElAtas~~VQEKLLRViEYG~fERVGG~~~l~vDVRlvaATN~DL 145 (349)
T TIGR02974 74 --------EAGAFTGAKKRHEGRFERADGGTLFLDELATASLAVQEKLLRVIEYGEFERVGGSQTLKVDVRLVAATNADL 145 (349)
T ss_pred --------CCCCHHHHCCCCCCCCEECCCCCCHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCEEEECCEEEECCCCCH
T ss_conf --------010013030468898544368873888871421676786612010130330178604773513676214136
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCC-EEEECCCC--CHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHH
Q ss_conf 553303689882111488999998728878817768-28962889--999999999999999999998669889998899
Q gi|254780163|r 629 LEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLD-SIIPFFPL--SSDIIRQVVHKFIMKLELQLQEKGISFHFSEEV 705 (798)
Q Consensus 629 ~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid-~ii~F~~l--~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~ 705 (798)
-. =+-+..||-.+|.|+- +||..=|| -.+|+.-++.-+=.....-|. .....-||+.|
T Consensus 146 P~------------------lA~~G~FRaDLLDRLAFDVi~LPPLR~R~~DI~lLAe~FA~~Ma~EL~-~~~F~GFt~~A 206 (349)
T TIGR02974 146 PA------------------LAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELG-LPLFPGFTPQA 206 (349)
T ss_pred HH------------------HHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCCHHHHHHH
T ss_conf 98------------------986589840145544565507978888723278999999999999707-86551143899
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9999971898101532679999986235
Q gi|254780163|r 706 INWLVSHGYDVKMGARPLERIIKEHVKV 733 (798)
Q Consensus 706 ~~~l~~~~~~~~~GAR~l~r~i~~~i~~ 733 (798)
...|.+..+=- --|.||.+||+-|-.
T Consensus 207 ~~~L~~Y~WPG--NvRELkNvvERsVyR 232 (349)
T TIGR02974 207 REQLLEYHWPG--NVRELKNVVERSVYR 232 (349)
T ss_pred HHHHHCCCCCC--CCHHHHHHHHHHHHH
T ss_conf 99997068888--521244467666530
No 212
>KOG0728 consensus
Probab=98.52 E-value=8.3e-06 Score=60.88 Aligned_cols=141 Identities=27% Similarity=0.525 Sum_probs=75.7
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCC----CHHHHHCCCEEE
Q ss_conf 8740688614320038899999873047733772068861246530110478000256444310----035551585177
Q gi|254780163|r 505 KPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGIL----ADSVDQNPYSVV 580 (798)
Q Consensus 505 rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~L----te~vr~~P~sVv 580 (798)
+|-|++|+ ||+|+|||.||++.|...+-.|||.--||.-.+ |+| ||..+ .-.-|.+.-|++
T Consensus 180 QPKGvlLy-gppgtGktLlaraVahht~c~firvsgselvqk------------~ig--egsrmvrelfvmarehapsii 244 (404)
T KOG0728 180 QPKGVLLY-GPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK------------YIG--EGSRMVRELFVMAREHAPSII 244 (404)
T ss_pred CCCCEEEE-CCCCCCHHHHHHHHHHHCCEEEEEECHHHHHHH------------HHH--HHHHHHHHHHHHHHHCCCCEE
T ss_conf 87604884-699975629999987541407999644999999------------850--138999999999875088267
Q ss_pred EECCHHH-----------CCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 7404455-----------02899999999877750217799776125429999424214553303689882111488999
Q gi|254780163|r 581 LLDEIEK-----------SHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKE 649 (798)
Q Consensus 581 l~DEiEK-----------Ah~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~ 649 (798)
+.|||+- .+.+|+...|.+|.. | | | --.-+|.-+||.+|- | +...+
T Consensus 245 fmdeidsigs~r~e~~~ggdsevqrtmlellnq--l-d--g-featknikvimatnr----i-------------dild~ 301 (404)
T KOG0728 245 FMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQ--L-D--G-FEATKNIKVIMATNR----I-------------DILDP 301 (404)
T ss_pred EEHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--C-C--C-CCCCCCEEEEEECCC----C-------------CCCCH
T ss_conf 500001212343457898638999999999974--0-2--4-000366269984164----2-------------22468
Q ss_pred HHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9987288788177682896288999999999999999999
Q gi|254780163|r 650 ALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLE 689 (798)
Q Consensus 650 ~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~ 689 (798)
..++| +|||.-|-|-|-+.+.-..|+.+.-+..+
T Consensus 302 ---allrp---gridrkiefp~p~e~ar~~ilkihsrkmn 335 (404)
T KOG0728 302 ---ALLRP---GRIDRKIEFPPPNEEARLDILKIHSRKMN 335 (404)
T ss_pred ---HHCCC---CCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf ---66387---75455564899877888789988555301
No 213
>PRK05642 DNA replication initiation factor; Validated
Probab=98.52 E-value=7.3e-06 Score=61.27 Aligned_cols=185 Identities=18% Similarity=0.331 Sum_probs=107.6
Q ss_pred HHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH---HHCCCCEEEEEHHHHHCCCCCC
Q ss_conf 0246653458999999999877520445657874068861432003889999987---3047733772068861246530
Q gi|254780163|r 474 NLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLA---FALGVQLLRFDMSEYMERHAVS 550 (798)
Q Consensus 474 ~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la---~~~~~~lir~dmsey~e~~~vs 550 (798)
.+..-|.|...+.-..+..+... +++.+--.+.+.||+|+|||.|..+.+ ...+...+-++|+++.+..
T Consensus 17 tfdnFi~g~N~~a~~~~~~l~~~-----~~~~~~~~l~i~G~~G~GKTHLL~A~~~~~~~~~~~~~yl~~~~~~~~~--- 88 (234)
T PRK05642 17 TFANYYPGANAAALGYVERLCEA-----DAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--- 88 (234)
T ss_pred CHHCCCCCCCHHHHHHHHHHHHC-----CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH---
T ss_conf 73035718759999999998760-----6787788389988999988999999999998079967997899987544---
Q ss_pred HHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHC--CHH----HHHHHHHHHHHHHCCCCCCCEECCCCEEEEEEC
Q ss_conf 11047800025644431003555158517774044550--289----999999987775021779977612542999942
Q gi|254780163|r 551 RLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKS--HPD----VLNILLQIMDYGILTDQSGKKISFRNVILIMTT 624 (798)
Q Consensus 551 ~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKA--h~~----v~~~llqild~G~ltd~~Gr~vdf~n~iii~Ts 624 (798)
|. ..+.+ ..+.+|++|.|+.- .++ +|+++=++.+.| +-++|||
T Consensus 89 ------~~---------~~~~l--~~~d~l~IDDi~~i~g~~~~e~~lF~l~N~~~~~~--------------~~llits 137 (234)
T PRK05642 89 ------PE---------LLDNL--EQYELVCIDDLDVIAGKADWEEALFHLFNRLRDSG--------------RRLLLAA 137 (234)
T ss_pred ------HH---------HHHHH--HHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHCC--------------CEEEEEC
T ss_conf ------99---------98624--22798989364554688599999999999999839--------------9599957
Q ss_pred CCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCC--EEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 4214553303689882111488999998728878817768--28962889999999999999999999998669889998
Q gi|254780163|r 625 NAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLD--SIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFS 702 (798)
Q Consensus 625 N~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid--~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~ 702 (798)
+.-..++ ...-|.+..|+- .++.-.|++.++..+|+... ..++|+ .++
T Consensus 138 ~~~P~~l---------------------~~~l~DL~SRl~~~~~~~i~~l~d~~~~~iL~~~-------a~~rgi--~l~ 187 (234)
T PRK05642 138 SKSPREL---------------------PVKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR-------ASRRGL--HLT 187 (234)
T ss_pred CCCHHHH---------------------CCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHH-------HHHCCC--CCC
T ss_conf 8795552---------------------3001679999957812751489989999999999-------775468--999
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 8999999971898101532679999986
Q gi|254780163|r 703 EEVINWLVSHGYDVKMGARPLERIIKEH 730 (798)
Q Consensus 703 ~~~~~~l~~~~~~~~~GAR~l~r~i~~~ 730 (798)
+++.+||+++.... + |.|..++.+.
T Consensus 188 ~~v~~yl~~r~~R~-~--~~L~~~l~~L 212 (234)
T PRK05642 188 DEVGHFILTRGTRS-M--SALFDLLERL 212 (234)
T ss_pred HHHHHHHHHHCCCC-H--HHHHHHHHHH
T ss_conf 89999999973588-9--9999999999
No 214
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=98.52 E-value=1.1e-05 Score=59.92 Aligned_cols=304 Identities=20% Similarity=0.265 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHH---CHHHHHHHHHCCCCHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 9999999999828995119999999820---7468999998599989999999999-64136545778886776469899
Q gi|254780163|r 11 VLHQALVLANERNHEYATLEHLLLALID---DSDAAIVMLSCNVDLKVLKNNLLNY-IDNDSSNKLKNGFRVECKPTSSF 86 (798)
Q Consensus 11 vL~~A~~lAk~~~H~~Vt~EHLLLaLL~---d~~~~~iL~~~giD~~~Lk~~Le~~-L~~~~~~~~~~~~~~ei~~S~~l 86 (798)
++..-..+.+..+...-..+.++-.+-+ +.....++..-+--+-.++..+... |+... ....+. ...++
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la--~~thG~-----~Gadl 473 (980)
T TIGR01243 401 VIKVLKDLEKDERFEKEKIEKIIEKVSKANSEDEIKEILKEDGNVYVEVRNRLIDKLLDKLA--EVTHGF-----VGADL 473 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH--HHHCCC-----HHHHH
T ss_conf 99999876665566788999999988631026789999750121246789999999999886--542362-----03559
Q ss_pred HHHHHHHHHHHH--HCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 999999999999--809981259998787873774299999998499989999999830000000111211024432100
Q gi|254780163|r 87 QRVVQRAVLHVQ--STGRGIVTGANILVALFSEPDSHATYFLQEQEMTLYDAVNFISHGISKRKEFANFQSKLNVDGSSA 164 (798)
Q Consensus 87 ~rVL~~A~~~A~--~~G~~~I~~eHLLLALL~e~ds~a~~iL~~~gis~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 164 (798)
..+-..|...+. ......|+. +.+.....+|..+-++..++.+.+..........--..-....|.
T Consensus 474 aal~~eaam~~lrr~~~eg~i~~---------ea~~iP~~vl~~lkvt~~df~ealk~~~P~~~re~~~evP~v~W~--- 541 (980)
T TIGR01243 474 AALAKEAAMAALRRLIREGKINL---------EAEEIPKEVLEELKVTMKDFKEALKMVEPSALREVLVEVPNVKWE--- 541 (980)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEEECCCCCCC---
T ss_conf 99989999999998740277450---------267757999987322289999998510623411000233751100---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf 00012444444455554455303565442588775486112221789999999986226778748966764116689999
Q gi|254780163|r 165 GSDGEGFVNDYQAKTDLNLFPALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEG 244 (798)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~LdkFg~DLTe~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~ 244 (798)
+ -.-|+..-..|-+...- |+ ... .+.+-|.=+--..++|.|+||.|||-++..
T Consensus 542 --d----------------iGGlee~kq~lreaveW----Pl--k~~---~~f~k~G~~PP~Gvll~GPPGtGktllaka 594 (980)
T TIGR01243 542 --D----------------IGGLEEVKQELREAVEW----PL--KAP---EVFEKLGIRPPKGVLLFGPPGTGKTLLAKA 594 (980)
T ss_pred --C----------------CCCHHHHHHHHHHHHHC----CC--CHH---HHHHHCCCCCCCCEEEECCCCCCHHHHHHH
T ss_conf --1----------------46678999999877523----44--405---899860788997348746898616888887
Q ss_pred HHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCC-CCCCC--CC-
Q ss_conf 999985489883452014455404675306343123789999999872038983999736166301554-44344--77-
Q gi|254780163|r 245 FAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGS-ASGIS--VD- 320 (798)
Q Consensus 245 la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~-~~g~~--~d- 320 (798)
+|..--. .++++-...++ +|+.||-|.+++.++..+++..+.|+|+|||..|--+-+ ..+.. .|
T Consensus 595 va~es~a----------nfi~v~GPe~l--skWvGese~~ir~if~~arq~aP~~~f~deidaiaP~rG~~~~~~~vtd~ 662 (980)
T TIGR01243 595 VATESGA----------NFIAVRGPEIL--SKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGASLDEKGVTDR 662 (980)
T ss_pred HHHCCCC----------CEEEECCCHHH--HHHHCHHHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCHHHH
T ss_conf 7401456----------46774073122--34403247999999998641287378730211105412442100102689
Q ss_pred HHHHHHHH----HCCCCEEEEEECCHHHHHHHHHCCHHHHH--HCEE-EEECCCCHHHHHHHHH
Q ss_conf 78888766----30266038873048999998520111432--0014-4306878689999998
Q gi|254780163|r 321 ASNLLKPA----LSSGAVRCIGSTTYSEYRQFFEKDKALVR--RFQK-IDVSEPSIEDAIEIVK 377 (798)
Q Consensus 321 ~an~lkP~----L~rg~~~~IgatT~~ey~~~~e~d~al~r--rF~~-i~v~ep~~~~~~~iL~ 377 (798)
+-|-|-.- -...++-+|+||.-.. =-||||-| ||.. |.|+.|+.+.-..|.+
T Consensus 663 ~~nqll~e~dG~~~~~~vvvi~atnrPd-----i~dPallrPGr~dr~i~vP~Pd~~ar~~ifk 721 (980)
T TIGR01243 663 IVNQLLTELDGLEELSDVVVIAATNRPD-----ILDPALLRPGRLDRLILVPAPDEEARLEIFK 721 (980)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCCC-----CCCCCCCCCCCCCEEEEECCCCHHHHHHHHH
T ss_conf 9999998640443436658986158874-----2361004887412168605985567676765
No 215
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.51 E-value=1.7e-07 Score=72.93 Aligned_cols=257 Identities=20% Similarity=0.281 Sum_probs=131.7
Q ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCC----------C
Q ss_conf 0356544258877548611222178999999998-6226778748966764116689999999985489----------8
Q gi|254780163|r 186 ALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQI-LCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGM----------V 254 (798)
Q Consensus 186 ~LdkFg~DLTe~AreGKLDPVIGRd~EI~riiqI-L~RR~KNn~~lvG~~gvGktaive~la~~i~~~~----------v 254 (798)
.|.+=-..|+..-.+| ++.|+++|+-++-- ||+. +.+|+|+||++|++|+..++..+..+. .
T Consensus 6 ~l~eri~~l~~~L~~g----l~ERe~~i~l~lLaalage---hvlllGPPGtAKS~larrl~~~~~~a~~FeyLltRFst 78 (498)
T PRK13531 6 LLAERISRLSSALEKG----LYERSHAIRLCLLAALSGE---SVFLLGPPGIAKSLIARRLKFAFQHARAFEYLMTRFST 78 (498)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCC---CEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf 7899999999999701----1446999999999997289---46988899513889999999985574089999874698
Q ss_pred CHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCC-
Q ss_conf 8345201445540467530634312378999999987203898399973616630155444344777888876630266-
Q gi|254780163|r 255 PDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGA- 333 (798)
Q Consensus 255 p~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~- 333 (798)
|+.+.|- +|+.+|--. |.++....+.+ ..--|.|+|||-. + ++ -+-|-|-..|--..
T Consensus 79 PeElFGP----~si~~Lk~~----g~y~R~t~G~L-----P~A~iaFLDEIfK------a-ns--AILNtLLtilNEr~f 136 (498)
T PRK13531 79 PEEVFGP----LSIQALKDE----GRYERLTSGYL-----PEAEIVFLDEIWK------A-GP--AILNTLLTAINERRF 136 (498)
T ss_pred HHHHCCC----CCHHHHHHC----CEEEEECCCCC-----CCCEEEHHHHHHH------C-CH--HHHHHHHHHHHHHEE
T ss_conf 8885383----329987117----84897226758-----8661315787861------4-88--999999998646403
Q ss_pred -----------EEEEEECCHHHHHHHHHCC---HHHHHHC-EEEEECCCCHHHHHH-HHHH------------HH---HH
Q ss_conf -----------0388730489999985201---1143200-144306878689999-9986------------12---76
Q gi|254780163|r 334 -----------VRCIGSTTYSEYRQFFEKD---KALVRRF-QKIDVSEPSIEDAIE-IVKG------------IK---PY 382 (798)
Q Consensus 334 -----------~~~IgatT~~ey~~~~e~d---~al~rrF-~~i~v~ep~~~~~~~-iL~~------------~~---~~ 382 (798)
+.+|||+. |+ =+.| .||-.|| -++.|..-....... +|.+ ++ ..
T Consensus 137 ~nG~~~~~vPL~~li~ASN--El---P~~~~~L~AlyDRfL~R~~v~~v~~~~nF~~lL~s~~~~~~~~i~~~l~is~eE 211 (498)
T PRK13531 137 RNGAHEEKIPMRLLVAASN--EL---PEADSSLEALYDRMLIRLWLDKVQDKANFRSMLVSQQDENDNPVPASLQVTDEE 211 (498)
T ss_pred CCCCCEECCCHHHHHHCCC--CC---CCCCCCHHHHHHHHHHHEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCEECHHH
T ss_conf 4798313044688643046--79---999840788887644102231316766799986178864445788557117999
Q ss_pred HH----HHCCCEECCHHHHHHHHHH--------HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 65----4103512111789999986--------54201555646798899865333321144322113657899986631
Q gi|254780163|r 383 FE----EHHQLRYSKEAIRAAVQLS--------VRHFTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIAS 450 (798)
Q Consensus 383 ye----~~h~v~~~~~al~~av~ls--------~ryi~~r~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~~ 450 (798)
|+ .-+.|.+++++++.+..+- .-|++||.. -||+.||- ||| .-..|..|..-|+.-..--
T Consensus 212 ~~~wq~~i~~V~lpd~v~e~I~~lR~~l~~~e~~~YVSDRRW-kKav~LLk-asA------f~~GR~eV~~~DllLL~hC 283 (498)
T PRK13531 212 YEQWQKEIGKITLPDHVFELIFQLRQQLDALPDAPYVSDRRW-KKAIRLLQ-ASA------FFSGRDAVAPIDLILLKDC 283 (498)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEECHHH-HHHHHHHH-HHH------HCCCCCCCCHHHHHHHHCC
T ss_conf 999998620213879999999999999851567875576689-99999999-987------5169553779888998635
Q ss_pred CCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCHHHHHHHHH
Q ss_conf 0245310111001123342100002466534589999999
Q gi|254780163|r 451 MNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLS 490 (798)
Q Consensus 451 ~~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~v~ 490 (798)
.|. -|.+.- ....-++..+.+.-++|......+-
T Consensus 284 LW~-d~~s~~-----~l~~~l~~~~~~~a~~Q~~~l~~~~ 317 (498)
T PRK13531 284 LWH-DAQSLN-----LLQQQLEVLMTGHAWQQQGMLTRLG 317 (498)
T ss_pred CCC-CHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 879-856789-----9999999999998888999999999
No 216
>PRK08181 transposase; Validated
Probab=98.50 E-value=1.1e-06 Score=67.15 Aligned_cols=70 Identities=24% Similarity=0.416 Sum_probs=36.3
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHC---CCCCCCHHHHHHHHHHHHHCCCCCEE
Q ss_conf 677874896676411668999999998548988345201445540467530---63431237899999998720389839
Q gi|254780163|r 223 RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIA---GTRYRGDFEERIKKIVKEIESYANAI 299 (798)
Q Consensus 223 R~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a---g~~~rg~fe~r~~~~~~~~~~~~~~i 299 (798)
+++.|.|++|+||||||-++-+|+..-+. +|++++-..+..|+. .++-.|.++..++.+ . +--+
T Consensus 104 ~~~~Nvil~Gp~GtGKThLA~Alg~~A~~-------~G~~V~f~~~~~L~~~L~~a~~~~~~~~~~~~l----~--~~dL 170 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLALIE-------NGWRVLFTRTTDLVQKLQVARRELQLESAIAKL----D--KFDL 170 (269)
T ss_pred HCCCEEEEECCCCCCHHHHHHHHHHHHHH-------CCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHH----H--CCCE
T ss_conf 64870899899998788999999999998-------799399978999999999977558399999997----4--4460
Q ss_pred EEECCH
Q ss_conf 997361
Q gi|254780163|r 300 LYIDEI 305 (798)
Q Consensus 300 lfidei 305 (798)
|.|||+
T Consensus 171 LIiDe~ 176 (269)
T PRK08181 171 LILDDL 176 (269)
T ss_pred EEEHHC
T ss_conf 122010
No 217
>PRK04132 replication factor C small subunit; Provisional
Probab=98.50 E-value=1.1e-07 Score=74.27 Aligned_cols=55 Identities=31% Similarity=0.513 Sum_probs=39.3
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 8775486112221789999999986226778748966764116689999999985
Q gi|254780163|r 196 EKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIV 250 (798)
Q Consensus 196 e~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~ 250 (798)
++-|-.+||-++|-|.-++|+---.-+..=.+-+.-||||||||+-+-.||+..-
T Consensus 17 EKYRPk~LddIVgQehIVkRLK~YVk~~smPHLLFaGPPGvGKt~~al~lar~l~ 71 (863)
T PRK04132 17 EKYRPQRLDEIVGQDHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (863)
T ss_pred HHCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 5318761655227499999999886238885443048998771447888888761
No 218
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.48 E-value=2.2e-05 Score=57.90 Aligned_cols=115 Identities=20% Similarity=0.365 Sum_probs=82.5
Q ss_pred EEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCH
Q ss_conf 17774044550289999999987775021779977612542999942421455330368988211148899999872887
Q gi|254780163|r 578 SVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSP 657 (798)
Q Consensus 578 sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~p 657 (798)
.|++.||+.--+=+.|..|-+.|++- |. -||||.||-|-..+. |-+-..+ .--+.
T Consensus 293 GVLFIDEvHmLDIE~FsFlnrAlEse-----------~a-PIii~AtNRG~~kiR----GTd~~sP---------hGIP~ 347 (450)
T COG1224 293 GVLFIDEVHMLDIECFSFLNRALESE-----------LA-PIIILATNRGMTKIR----GTDIESP---------HGIPL 347 (450)
T ss_pred CEEEEECHHHHHHHHHHHHHHHHHCC-----------CC-CEEEEECCCCEEEEC----CCCCCCC---------CCCCH
T ss_conf 42897321345578999999876314-----------67-579997177500121----6677688---------88987
Q ss_pred HHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 8817768289628899999999999999999999986698899988999999971898101532679999986235
Q gi|254780163|r 658 EFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKV 733 (798)
Q Consensus 658 eflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~ 733 (798)
.||.|+ -||.-+|.+.++++.|+....++ -.+.++++|+++|++-|-. ++||-.+ +.+.+
T Consensus 348 DlLDRl-lII~t~py~~~EireIi~iRa~e---------e~i~l~~~Ale~L~~ig~e-----tSLRYa~-qLL~p 407 (450)
T COG1224 348 DLLDRL-LIISTRPYSREEIREIIRIRAKE---------EDIELSDDALEYLTDIGEE-----TSLRYAV-QLLTP 407 (450)
T ss_pred HHHHHE-EEEECCCCCHHHHHHHHHHHHHH---------HCCCCCHHHHHHHHHHCHH-----HHHHHHH-HHCCH
T ss_conf 666225-67744779889999999976435---------4030488899999751503-----4489999-86168
No 219
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=3.6e-06 Score=63.50 Aligned_cols=180 Identities=19% Similarity=0.259 Sum_probs=104.9
Q ss_pred HHHHHHHHHCCCCCCE-EEECCCCCHHHHHHHHHHHHHHCCCCCHHHH-------------EEEEEEEEHHHHHCCCCCC
Q ss_conf 9999998622677874-8966764116689999999985489883452-------------0144554046753063431
Q gi|254780163|r 213 INRTIQILCRRSKNNP-LYVGDPGVGKTAIAEGFAKQIVDGMVPDILL-------------GARIFSLDMGNLIAGTRYR 278 (798)
Q Consensus 213 I~riiqIL~RR~KNn~-~lvG~~gvGktaive~la~~i~~~~vp~~l~-------------~~~i~~ld~~~l~ag~~~r 278 (798)
.++++..+.+-+=.+. ++.|++|+||++++..+|+.+......+.-. +..+++. ..--.|.+.+
T Consensus 13 ~~~L~~~i~~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~llc~~~~~~~~~~~~~~i~~g~HPD~~~i~~--~~~~~~~k~k 90 (319)
T PRK08769 13 FDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPALAQRTRQLIAAGTHPDLQLVSF--IPNRTGDKLR 90 (319)
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEEEEC--CCCCCCCCCC
T ss_conf 99999999769942068758999878999999999998379979765433889996689989687753--4444543112
Q ss_pred CHH-HHHHHHHHHHHCCC----CCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHC
Q ss_conf 237-89999999872038----98399973616630155444344777888876630--266038873048999998520
Q gi|254780163|r 279 GDF-EERIKKIVKEIESY----ANAILYIDEIHTLVGAGSASGISVDASNLLKPALS--SGAVRCIGSTTYSEYRQFFEK 351 (798)
Q Consensus 279 g~f-e~r~~~~~~~~~~~----~~~ilfideih~ligag~~~g~~~d~an~lkP~L~--rg~~~~IgatT~~ey~~~~e~ 351 (798)
-+. =+.++.+++.+... +.-|..||+.|++ +..++|-|.-.|. ....-+|=.|+..+ + -
T Consensus 91 ~~I~IdqiR~l~~~~~~~p~~g~~KV~IId~Ad~m---------n~~AaNalLK~LEEPp~~~~~iL~~~~~~--~---l 156 (319)
T PRK08769 91 TEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI---------NRSACNALLKTLEEPSPGRYLWLISAQPA--R---L 156 (319)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHC---------CHHHHHHHHHHHCCCCCCEEEEEEECCHH--H---C
T ss_conf 34869999999999613720279569998066752---------89999999998227998848999869936--5---8
Q ss_pred CHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 1114320014430687868999999861276654103512111789999986542015556467988998653
Q gi|254780163|r 352 DKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEAG 424 (798)
Q Consensus 352 d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea~ 424 (798)
=+.+-.|-|.|....|+.+++..-|.+- | +.+.....+..++ +--|..|..++.+..
T Consensus 157 l~TI~SRCq~~~~~~p~~~~~~~~L~~~--------g--~~~~~a~~~l~~a------~g~p~~A~~~~~~~~ 213 (319)
T PRK08769 157 PATIRSRCQRLEFKLPPAHEALAWLLSQ--------G--VSERAAQEALDAA------RGHPGLAAQWLREDG 213 (319)
T ss_pred CHHHHHCCEEECCCCCCHHHHHHHHHHC--------C--CCHHHHHHHHHHH------CCCHHHHHHHHCCCC
T ss_conf 2477648501118996999999999975--------9--9918999999982------799689999843672
No 220
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482 This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=98.46 E-value=7.4e-08 Score=75.60 Aligned_cols=224 Identities=25% Similarity=0.343 Sum_probs=121.0
Q ss_pred HHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCC---
Q ss_conf 65345899999999987752044565787406886143200388999998730477337720688612465301104---
Q gi|254780163|r 478 VVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIG--- 554 (798)
Q Consensus 478 ~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiG--- 554 (798)
-|+||.+|-+++--| -||=+ .+||+||+|+|||.+|+.+.=-+.. +---|--|..+|..|.|
T Consensus 195 dv~GQ~~akRAleIA----aAGGH-------Nlll~GPPGsGKTmla~r~~giLP~----L~~~EalE~~~v~S~~~~l~ 259 (505)
T TIGR00368 195 DVKGQQHAKRALEIA----AAGGH-------NLLLLGPPGSGKTMLASRLQGILPP----LTNEEALETARVLSLVGKLI 259 (505)
T ss_pred CCCCHHHCCHHHHHH----HHCCC-------CEEEECCCCCCHHHHHHHHHCCCCC----CCCHHHHHHHHHHHHHHHHH
T ss_conf 254510110267775----31356-------4376782496268999875105786----45126666788888887576
Q ss_pred ------------------CCCHHCCCC---CCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCC-CE
Q ss_conf ------------------780002564---44310035551585177740445502899999999877750217799-77
Q gi|254780163|r 555 ------------------APPGYVGFG---QGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSG-KK 612 (798)
Q Consensus 555 ------------------appGYvG~~---egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~G-r~ 612 (798)
|-||-||=+ ..|...=|- ..|++|||.-==-..|++.|=|-+++|.++=+.- .+
T Consensus 260 ~~~~~~rQRPFR~PHHsAS~~~lvGGG~~P~PGEiSLAh----nGvLFLDEl~EF~r~vL~~LR~PlEdg~i~iSRa~~k 335 (505)
T TIGR00368 260 DRKQWKRQRPFRSPHHSASKPALVGGGSIPKPGEISLAH----NGVLFLDELPEFKRKVLDALREPLEDGSISISRAKAK 335 (505)
T ss_pred HCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHC----CCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEECCCH
T ss_conf 523011068677865002566640587522285120200----5410432220446789987178742670688632201
Q ss_pred EC-CCCEE-EEEECCCCHHHHHHCCCCCCCCCCHH---HHHH--HHHHHCCHHHHCCCCEEEECCCCC-HHHHHHHH---
Q ss_conf 61-25429-99942421455330368988211148---8999--998728878817768289628899-99999999---
Q gi|254780163|r 613 IS-FRNVI-LIMTTNAGALEMSKARIGFGSSRNDD---ADKE--ALRNFLSPEFLNRLDSIIPFFPLS-SDIIRQVV--- 681 (798)
Q Consensus 613 vd-f~n~i-ii~TsN~G~~~~~~~~~g~~~~~~~~---~~~~--~l~~~f~peflnRid~ii~F~~l~-~~~~~~i~--- 681 (798)
+- |==-. .|...|. ...|+-.....+ ...+ .--+.++-.||.|||=-|.-+-+. +..|..=.
T Consensus 336 i~kyPA~FqL~aAmNp-------cPcG~~~~~~~~c~cSp~q~~~Yl~kLsgp~LDRiDl~v~v~~~~n~~~L~~t~~~G 408 (505)
T TIGR00368 336 IFKYPARFQLVAAMNP-------CPCGHYGGKITHCRCSPQQISRYLNKLSGPFLDRIDLSVEVPLLPNPGLLSETGVRG 408 (505)
T ss_pred HHCCCHHHHHHHHHCC-------CCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHCHHCCEECCCCCCCCCHHHHCCCCC
T ss_conf 0008724556756178-------877677787444658978999998742711200011400137888741344247899
Q ss_pred ------HHHHHHHHHH-HH--HC--CCEE-------------EECHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf ------9999999999-98--66--9889-------------9988999999971898101532679999
Q gi|254780163|r 682 ------HKFIMKLELQ-LQ--EK--GISF-------------HFSEEVINWLVSHGYDVKMGARPLERII 727 (798)
Q Consensus 682 ------~~~l~~l~~~-l~--~~--~i~l-------------~~~~~~~~~l~~~~~~~~~GAR~l~r~i 727 (798)
+-.+-+...+ .. ++ +|.+ ++++....||-..=---..-+|.+.|++
T Consensus 409 ESS~~vkqrv~kaR~~q~~R~~k~A~I~~Na~L~s~~i~~FC~L~~~~~~~Le~~L~kLglS~RA~~riL 478 (505)
T TIGR00368 409 ESSAEVKQRVLKAREIQIKRYEKFAKINLNAELNSDEIEQFCKLDEKDANLLEGALNKLGLSVRATHRIL 478 (505)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 5267899999999999997303545503373358245654057156889999999987085166887688
No 221
>KOG0728 consensus
Probab=98.46 E-value=2e-06 Score=65.29 Aligned_cols=196 Identities=22% Similarity=0.356 Sum_probs=128.8
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 77874896676411668999999998548988345201445540467530634312378999999987203898399973
Q gi|254780163|r 224 SKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYID 303 (798)
Q Consensus 224 ~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfid 303 (798)
.-..++|-|+||.|||-++...|.- -++.++.++.+.|+ .||-||--.-++.++--++.+.+.|+|.|
T Consensus 180 QPKGvlLygppgtGktLlaraVahh----------t~c~firvsgselv--qk~igegsrmvrelfvmarehapsiifmd 247 (404)
T KOG0728 180 QPKGVLLYGPPGTGKTLLARAVAHH----------TDCTFIRVSGSELV--QKYIGEGSRMVRELFVMAREHAPSIIFMD 247 (404)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHH----------CCEEEEEECHHHHH--HHHHHHHHHHHHHHHHHHHHCCCCEEEEH
T ss_conf 8760488469997562999998754----------14079996449999--99850138999999999875088267500
Q ss_pred CHHHHHCCCCCCCCC----------CCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHH--HC-EEEEECCCCHH
Q ss_conf 616630155444344----------777888876630266038873048999998520111432--00-14430687868
Q gi|254780163|r 304 EIHTLVGAGSASGIS----------VDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVR--RF-QKIDVSEPSIE 370 (798)
Q Consensus 304 eih~ligag~~~g~~----------~d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~r--rF-~~i~v~ep~~~ 370 (798)
||..| |....++++ +..-|-|...=+...|++|.||.--. --|+||-| |. .+|..++|+.+
T Consensus 248 eidsi-gs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnrid-----ild~allrpgridrkiefp~p~e~ 321 (404)
T KOG0728 248 EIDSI-GSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRID-----ILDPALLRPGRIDRKIEFPPPNEE 321 (404)
T ss_pred HCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCC-----CCCHHHCCCCCCCCCCCCCCCCHH
T ss_conf 00121-234345789863899999999997402400036626998416422-----246866387754555648998778
Q ss_pred HHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999986127665410351211178999998654201555646798899865333321144322113657899986631
Q gi|254780163|r 371 DAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIAS 450 (798)
Q Consensus 371 ~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~~ 450 (798)
.-..||+--..+..-..|+.... |.. .+|+-.=-=+...|.-+.+-++.++|-.|+.+|..-.|.+
T Consensus 322 ar~~ilkihsrkmnl~rgi~l~k-------------iae-km~gasgaevk~vcteagm~alrerrvhvtqedfemav~k 387 (404)
T KOG0728 322 ARLDILKIHSRKMNLTRGINLRK-------------IAE-KMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 387 (404)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHH-------------HHH-HCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 88789988555301330667899-------------998-6789863025434335457888765200238889999999
Q ss_pred C
Q ss_conf 0
Q gi|254780163|r 451 M 451 (798)
Q Consensus 451 ~ 451 (798)
.
T Consensus 388 v 388 (404)
T KOG0728 388 V 388 (404)
T ss_pred H
T ss_conf 9
No 222
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1e-05 Score=60.21 Aligned_cols=177 Identities=29% Similarity=0.453 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHH---CCCCCC---EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHH-----HCCC
Q ss_conf 217899999999862---267787---48966764116689999999985489883452014455404675-----3063
Q gi|254780163|r 207 VGRHEEINRTIQILC---RRSKNN---PLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNL-----IAGT 275 (798)
Q Consensus 207 IGRd~EI~riiqIL~---RR~KNn---~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l-----~ag~ 275 (798)
.|=++-=+|+++-|+ |+.|-. -||||+||||||+++...|.-+ |+..+.+.+|.+ |-|-
T Consensus 326 YGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al----------~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 326 YGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL----------GRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH----------CCCEEEEECCCCCCHHHHCCC
T ss_conf 6711689999999999986146788579997899887011899999995----------897799954765427775355
Q ss_pred --CCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCC-HHHH---HHHHHCC-------------CCEEE
Q ss_conf --431237899999998720389839997361663015544434477-7888---8766302-------------66038
Q gi|254780163|r 276 --RYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVD-ASNL---LKPALSS-------------GAVRC 336 (798)
Q Consensus 276 --~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d-~an~---lkP~L~r-------------g~~~~ 336 (798)
.|-|-.-.|+-.-|+.+... |.+..+|||.-+ |++-. .| ||-+ |-|---. .++=+
T Consensus 396 RRTYIGaMPGrIiQ~mkka~~~-NPv~LLDEIDKm---~ss~r--GDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVK-NPVFLLDEIDKM---GSSFR--GDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred CCCCCCCCCHHHHHHHHHHCCC-CCEEEEECHHHC---CCCCC--CCHHHHHHHHCCHHHCCCHHHCCCCCCCCHHHEEE
T ss_conf 3123356872899999986776-874786403331---67777--88688888626976567612220167664432588
Q ss_pred EEECCHHHHHHHHH-CCHHHHHHCEEEEECCCCHHHHHHHHHH-HHHHHHHHC-----CCEECCHHHHHHHHHHHH
Q ss_conf 87304899999852-0111432001443068786899999986-127665410-----351211178999998654
Q gi|254780163|r 337 IGSTTYSEYRQFFE-KDKALVRRFQKIDVSEPSIEDAIEIVKG-IKPYFEEHH-----QLRYSKEAIRAAVQLSVR 405 (798)
Q Consensus 337 IgatT~~ey~~~~e-~d~al~rrF~~i~v~ep~~~~~~~iL~~-~~~~ye~~h-----~v~~~~~al~~av~ls~r 405 (798)
|+ |-. +++ --++|-.|-+.|.+.--+.++-+.|-+. +-++--.-| .+.|+|+||...++.-.|
T Consensus 470 ia--TAN----sl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTR 539 (782)
T COG0466 470 IA--TAN----SLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTR 539 (782)
T ss_pred EE--ECC----CCCCCCHHHHCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHCCCCCCCEEECHHHHHHHHHHHHH
T ss_conf 86--037----51329867843030564268886999999998445689997599823355658999999998767
No 223
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.44 E-value=7.4e-06 Score=61.24 Aligned_cols=215 Identities=18% Similarity=0.289 Sum_probs=136.5
Q ss_pred HCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHH--CCCCEEEEEHHHHHCCCCCCHHCCCCC
Q ss_conf 345899999999987752044565787406886143200388999998730--477337720688612465301104780
Q gi|254780163|r 480 YGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFA--LGVQLLRFDMSEYMERHAVSRLIGAPP 557 (798)
Q Consensus 480 ~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~--~~~~lir~dmsey~e~~~vs~LiGapp 557 (798)
++++..+.....-+.+. ...+-| .|..|-||+||-.+|+++-+. .+.+++-+||.-+-+.+.-|-|+|--|
T Consensus 316 ~~~d~s~a~l~rk~~rv----~~~~~p---vll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~ 388 (606)
T COG3284 316 PLLDPSRATLLRKAERV----AATDLP---VLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVA 388 (606)
T ss_pred CCCCHHHHHHHHHHHHH----HHCCCC---EEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCC
T ss_conf 45578899999999887----624787---68538765568999999985365569837998503447764677744576
Q ss_pred HH-CCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCC--CCCCCEECCCCEEEEEECCCCHHHHHHC
Q ss_conf 00-25644431003555158517774044550289999999987775021--7799776125429999424214553303
Q gi|254780163|r 558 GY-VGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILT--DQSGKKISFRNVILIMTTNAGALEMSKA 634 (798)
Q Consensus 558 GY-vG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~lt--d~~Gr~vdf~n~iii~TsN~G~~~~~~~ 634 (798)
|= -|.---|. .-++.+-+-.-+++|||.----+.+.-||+||.+|..| ++.-.+||++ ||.+|+---+.+.
T Consensus 389 GafTga~~kG~-~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdir---vi~ath~dl~~lv-- 462 (606)
T COG3284 389 GAFTGARRKGY-KGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIR---VIAATHRDLAQLV-- 462 (606)
T ss_pred CCCCCCHHCCC-CCCCEECCCCCCHHHHHHHCHHHHHHHHHHHHHHCCEECCCCCCEEEEEE---EEECCCCCHHHHH--
T ss_conf 56433001066-55410157876089876114189999999998618252358852157799---9834675799998--
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCHHHHCCCCE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCC
Q ss_conf 6898821114889999987288788177682-896288999999999999999999999866988999889999999718
Q gi|254780163|r 635 RIGFGSSRNDDADKEALRNFLSPEFLNRLDS-IIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHG 713 (798)
Q Consensus 635 ~~g~~~~~~~~~~~~~l~~~f~peflnRid~-ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~ 713 (798)
-...|+-.+.-|+.. +|..-||.+..=. |. .|.++..+ +..-.+.++++++..|....
T Consensus 463 ----------------~~g~fredLyyrL~~~~i~lP~lr~R~d~-~~--~l~~~~~~--~~~~~~~l~~~~~~~l~~~~ 521 (606)
T COG3284 463 ----------------EQGRFREDLYYRLNAFVITLPPLRERSDR-IP--LLDRILKR--ENDWRLQLDDDALARLLAYR 521 (606)
T ss_pred ----------------HCCCCHHHHHHHHCCEEECCCCHHCCCCC-HH--HHHHHHHH--CCCCCCCCCHHHHHHHHHCC
T ss_conf ----------------75971487888744715506861104665-78--99999987--26877568999999998578
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 98101532679999986
Q gi|254780163|r 714 YDVKMGARPLERIIKEH 730 (798)
Q Consensus 714 ~~~~~GAR~l~r~i~~~ 730 (798)
+-- --|.|..+|+..
T Consensus 522 WPG--Nirel~~v~~~~ 536 (606)
T COG3284 522 WPG--NIRELDNVIERL 536 (606)
T ss_pred CCC--CHHHHHHHHHHH
T ss_conf 998--289999999999
No 224
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.43 E-value=2.7e-05 Score=57.21 Aligned_cols=142 Identities=23% Similarity=0.400 Sum_probs=91.8
Q ss_pred HHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEEHHHH
Q ss_conf 2334210000246653458999999999877520445657874068861432003889999987304-773377206886
Q gi|254780163|r 465 DSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL-GVQLLRFDMSEY 543 (798)
Q Consensus 465 ~~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~-~~~lir~dmsey 543 (798)
.+++..|-..|.+-++.-+++|+-+.-+..- | . +.+++||+|++|+.+|+.+++.. +.+..-.=|+-|
T Consensus 8 ~eri~~l~~~L~~gl~ERe~~i~l~lLaala---g-----e---hvlllGPPGtAKS~larrl~~~~~~a~~FeyLltRF 76 (498)
T PRK13531 8 AERISRLSSALEKGLYERSHAIRLCLLAALS---G-----E---SVFLLGPPGIAKSLIARRLKFAFQHARAFEYLMTRF 76 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C-----C---CEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHCC
T ss_conf 9999999999970114469999999999972---8-----9---469888995138899999999855740899998746
Q ss_pred HCCC------CCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCC
Q ss_conf 1246------5301104780002564443100355515851777404455028999999998777502177997761254
Q gi|254780163|r 544 MERH------AVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRN 617 (798)
Q Consensus 544 ~e~~------~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n 617 (798)
+++. ++..|-.- --|+--. .|.|.+| .|+++|||=||.|.++|.||.++-|-...++. ..+..-=
T Consensus 77 stPeElFGP~si~~Lk~~-g~y~R~t-~G~LP~A------~iaFLDEIfKansAILNtLLtilNEr~f~nG~-~~~~vPL 147 (498)
T PRK13531 77 STPEEVFGPLSIQALKDE-GRYERLT-SGYLPEA------EIVFLDEIWKAGPAILNTLLTAINERRFRNGA-HEEKIPM 147 (498)
T ss_pred CCHHHHCCCCCHHHHHHC-CEEEEEC-CCCCCCC------EEEHHHHHHHCCHHHHHHHHHHHHHHEECCCC-CEECCCH
T ss_conf 988885383329987117-8489722-6758866------13157878614889999999986464034798-3130446
Q ss_pred EEEEEECCC
Q ss_conf 299994242
Q gi|254780163|r 618 VILIMTTNA 626 (798)
Q Consensus 618 ~iii~TsN~ 626 (798)
-.+|-.||-
T Consensus 148 ~~li~ASNE 156 (498)
T PRK13531 148 RLLVAASNE 156 (498)
T ss_pred HHHHHCCCC
T ss_conf 886430467
No 225
>PRK08727 hypothetical protein; Validated
Probab=98.42 E-value=2.8e-05 Score=57.05 Aligned_cols=141 Identities=22% Similarity=0.343 Sum_probs=64.0
Q ss_pred EEEECCCCHHHHHHHHHHH---HHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHH
Q ss_conf 8861432003889999987---3047733772068861246530110478000256444310035551585177740445
Q gi|254780163|r 510 YVFSGPTGVGKTEISKQLA---FALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIE 586 (798)
Q Consensus 510 flf~GptGvGKTelak~la---~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiE 586 (798)
+.+.||+|+|||.|+.+.+ ...+....-+++.++... ...- .+.+ ....+|.+|.||
T Consensus 44 lyl~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~l~~~~~~-~~~~-----------------l~~l--e~~~ll~iDDid 103 (233)
T PRK08727 44 LYLSGPAGTGKTHLALSLCAAAEQAGRSSAYLPLQAAAGR-LRDA-----------------LEAL--EGRSLVALDGVD 103 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHH-HHHH-----------------HHHH--CCCCEEEEECCH
T ss_conf 9998999998899999999999827997288447885320-2567-----------------7531--038978985501
Q ss_pred HCC--H----HHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHH
Q ss_conf 502--8----9999999987775021779977612542999942421455330368988211148899999872887881
Q gi|254780163|r 587 KSH--P----DVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFL 660 (798)
Q Consensus 587 KAh--~----~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~pefl 660 (798)
.-. + .+|+++=++.+.| +-++|||+.-...+ .+..|.+.
T Consensus 104 ~i~g~~~~e~aLFhL~N~~~~~~--------------~~ll~ts~~~P~~l---------------------~~~l~DL~ 148 (233)
T PRK08727 104 SIAGQREDEVALFDFHNRARAAG--------------ITLLYTARQMPDGL---------------------ALVLPDLR 148 (233)
T ss_pred HCCCCHHHHHHHHHHHHHHHHCC--------------CEEEEECCCCHHHH---------------------CCCHHHHH
T ss_conf 12698279999999999998619--------------83899779895662---------------------31002199
Q ss_pred CCCC--EEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCC
Q ss_conf 7768--28962889999999999999999999998669889998899999997189
Q gi|254780163|r 661 NRLD--SIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGY 714 (798)
Q Consensus 661 nRid--~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~ 714 (798)
.|+- .++...|++.+....++.+.. .++| +.+++++.+||+.+.-
T Consensus 149 SRL~~~~~~~l~~~dD~~~~~iL~~~a-------~~rg--l~l~~~V~~Yll~r~~ 195 (233)
T PRK08727 149 SRLSQCIRIGLPVLDDVARAAVLRDRA-------QRRG--LALDEAAIDWLLTHGE 195 (233)
T ss_pred HHHHCCCEEEECCCCHHHHHHHHHHHH-------HHCC--CCCCHHHHHHHHHHCC
T ss_conf 999669228857889799999999999-------9869--9999899999998568
No 226
>PRK09183 transposase/IS protein; Provisional
Probab=98.42 E-value=1.2e-06 Score=66.98 Aligned_cols=99 Identities=20% Similarity=0.346 Sum_probs=51.5
Q ss_pred EEEEECCCCHHHHHHHHHHHH---HCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHH--CCCEEEEEC
Q ss_conf 688614320038899999873---047733772068861246530110478000256444310035551--585177740
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLAF---ALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQ--NPYSVVLLD 583 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la~---~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~--~P~sVvl~D 583 (798)
+.+|+||||||||.||-+|+. -.+.+..-+.|++..+.-..++-- |.+...+.+ ..+.++++|
T Consensus 103 Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~L~~a~~~------------~~~~~~l~r~l~~~dLLIiD 170 (258)
T PRK09183 103 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQ------------GRYKTTLQRGVMAPRLLIID 170 (258)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHC------------CCHHHHHHHHHCCCCEEEEH
T ss_conf 679989999868999999999999879939997899999999999876------------85999999874346514431
Q ss_pred CH--HHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHH
Q ss_conf 44--550289999999987775021779977612542999942421455
Q gi|254780163|r 584 EI--EKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALE 630 (798)
Q Consensus 584 Ei--EKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~ 630 (798)
|+ ..-.+..-++|+|++++=. ++ .+ +|+|||..-.+
T Consensus 171 dlG~~~~~~~~~~~lfeli~~Ry-----e~-----~S-~IiTSn~~~~~ 208 (258)
T PRK09183 171 EIGYLPFSQEEANLFFQVIAKRY-----EK-----GA-MILTSNLPFGQ 208 (258)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHH-----CC-----CC-EEEECCCCHHH
T ss_conf 33154688889999999999985-----76-----77-89988999789
No 227
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.41 E-value=2.9e-06 Score=64.19 Aligned_cols=121 Identities=21% Similarity=0.352 Sum_probs=68.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHC---CCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHH-HCCCEEEEEC
Q ss_conf 068861432003889999987304---773377206886124653011047800025644431003555-1585177740
Q gi|254780163|r 508 GCYVFSGPTGVGKTEISKQLAFAL---GVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVD-QNPYSVVLLD 583 (798)
Q Consensus 508 g~flf~GptGvGKTelak~la~~~---~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr-~~P~sVvl~D 583 (798)
.+++|.||+|||||.||-+++..+ +.+.+-+..+|++. +|..+ +++|..-.+-.+ -..+-|+.+|
T Consensus 106 ~nl~l~G~~G~GKthLa~Ai~~~l~~~g~sv~f~~~~el~~-----~Lk~~------~~~~~~~~~l~~~l~~~dlLIiD 174 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLS-----KLKAA------FDEGRLEEKLLRELKKVDLLIID 174 (254)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHH-----HHHHH------HHCCCHHHHHHHHHHHCCEEEEE
T ss_conf 82899899998799999999999998398499988599999-----99998------74552689999887528989982
Q ss_pred CHH--HCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 445--5028999999998777502177997761254299994242145533036898821114889999987
Q gi|254780163|r 584 EIE--KSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRN 653 (798)
Q Consensus 584 EiE--KAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~ 653 (798)
||= ...+..-+.|+|+++.=+.. ... |+|||.--.+.... .+. ....+...+.+.-
T Consensus 175 DlG~~~~~~~~~~~~~q~I~~r~~~----------~~~-~~tsN~~~~~~~~~-~~~--~~~~e~~~dRi~~ 232 (254)
T COG1484 175 DIGYEPFSQEEADLLFQLISRRYES----------RSL-IITSNLSFGEWDEL-FGD--DALTEALLDRILH 232 (254)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH----------CCC-CEEECCCHHHHHHH-CCC--CCHHHHHHHHHHH
T ss_conf 3677668815587999999999973----------054-20205882788866-067--5116899999986
No 228
>PRK06526 transposase; Provisional
Probab=98.41 E-value=1.2e-06 Score=66.90 Aligned_cols=69 Identities=26% Similarity=0.541 Sum_probs=32.5
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHC---CCCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 77874896676411668999999998548988345201445540467530---634312378999999987203898399
Q gi|254780163|r 224 SKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIA---GTRYRGDFEERIKKIVKEIESYANAIL 300 (798)
Q Consensus 224 ~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a---g~~~rg~fe~r~~~~~~~~~~~~~~il 300 (798)
.+.|.+++|+||+|||-++-+|+...+. +|++++-..+..|+. -++-.|.++..++. +.+. -+|
T Consensus 97 ~~~Nvil~G~~GtGKThLA~Alg~~A~~-------~G~~v~f~~~~~L~~~L~~a~~~g~~~~~~~~----l~~~--dLL 163 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQ-------AGHRVLFATAAQWVARLAAAHHAGRLQDELVK----LGRI--PLL 163 (254)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHH-------CCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHH----HHCC--CEE
T ss_conf 5887899899998689999999999998-------69967998779999999998855809999998----5136--877
Q ss_pred EECCH
Q ss_conf 97361
Q gi|254780163|r 301 YIDEI 305 (798)
Q Consensus 301 fidei 305 (798)
.|||+
T Consensus 164 IiDe~ 168 (254)
T PRK06526 164 IVDEV 168 (254)
T ss_pred EEECC
T ss_conf 65021
No 229
>PRK08727 hypothetical protein; Validated
Probab=98.41 E-value=7e-05 Score=54.22 Aligned_cols=204 Identities=14% Similarity=0.195 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEE-EECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHH
Q ss_conf 21789999999986226778748-96676411668999999998548988345201445540467530634312378999
Q gi|254780163|r 207 VGRHEEINRTIQILCRRSKNNPL-YVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERI 285 (798)
Q Consensus 207 IGRd~EI~riiqIL~RR~KNn~~-lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~ 285 (798)
.|.+..+.++.+.. .-...|++ |.|++|+|||.++++++...... ++...-+++.. +....
T Consensus 23 ~~~n~~~a~l~~~~-~~~~~~~lyl~G~~GsGKTHLl~a~~~~~~~~-------~~~~~yl~l~~----------~~~~~ 84 (233)
T PRK08727 23 AAPDGLLAQLQALA-AGQSSDWLYLSGPAGTGKTHLALSLCAAAEQA-------GRSSAYLPLQA----------AAGRL 84 (233)
T ss_pred CCCHHHHHHHHHHH-CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC-------CCCEEEEEHHH----------HHHHH
T ss_conf 78559999999874-38888989998999998899999999999827-------99728844788----------53202
Q ss_pred HHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHC---EEE
Q ss_conf 99998720389839997361663015544434477788887663026603887304899999852011143200---144
Q gi|254780163|r 286 KKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRF---QKI 362 (798)
Q Consensus 286 ~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF---~~i 362 (798)
..+++.++. .-.+.||+||.+.|-...+.. .=|++--...+|.--++.+..+--.-.+..+| |..|+ ..+
T Consensus 85 ~~~l~~le~--~~ll~iDDid~i~g~~~~e~a---LFhL~N~~~~~~~~ll~ts~~~P~~l~~~l~D--L~SRL~~~~~~ 157 (233)
T PRK08727 85 RDALEALEG--RSLVALDGVDSIAGQREDEVA---LFDFHNRARAAGITLLYTARQMPDGLALVLPD--LRSRLSQCIRI 157 (233)
T ss_pred HHHHHHHCC--CCEEEEECCHHCCCCHHHHHH---HHHHHHHHHHCCCEEEEECCCCHHHHCCCHHH--HHHHHHCCCEE
T ss_conf 567753103--897898550112698279999---99999999861983899779895662310021--99999669228
Q ss_pred EECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 30687868999999861276654103512111789999986542015556467988998653333211443221136578
Q gi|254780163|r 363 DVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITEK 442 (798)
Q Consensus 363 ~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea~a~~~~~~~~~~~~~~~~~ 442 (798)
.+.+|+.++-..+|... -...|+.++++++.+.+.-..|=+.. =-+.++-||.+. .. .++.||-.
T Consensus 158 ~l~~~dD~~~~~iL~~~----a~~rgl~l~~~V~~Yll~r~~R~~~~---l~~~l~~LD~~S-------L~-~kr~iTip 222 (233)
T PRK08727 158 GLPVLDDVARAAVLRDR----AQRRGLALDEAAIDWLLTHGERELAG---LVALLDRLDRES-------LA-AKRRITVP 222 (233)
T ss_pred EECCCCHHHHHHHHHHH----HHHCCCCCCHHHHHHHHHHCCCCHHH---HHHHHHHHHHHH-------HH-CCCCCCHH
T ss_conf 85788979999999999----99869999989999999856889999---999999999999-------98-08988899
Q ss_pred HHHHHHHH
Q ss_conf 99986631
Q gi|254780163|r 443 DIKKTIAS 450 (798)
Q Consensus 443 ~i~~~~~~ 450 (798)
=+.+++.+
T Consensus 223 ~vk~vL~e 230 (233)
T PRK08727 223 FLRRVLEE 230 (233)
T ss_pred HHHHHHHH
T ss_conf 99999972
No 230
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=98.40 E-value=7.3e-06 Score=61.30 Aligned_cols=55 Identities=33% Similarity=0.534 Sum_probs=33.6
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCH-HHHHHHHHH
Q ss_conf 778748966764116689999999985489883452014455404675306343123-789999999
Q gi|254780163|r 224 SKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGD-FEERIKKIV 289 (798)
Q Consensus 224 ~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~-fe~r~~~~~ 289 (798)
.++|.+|||+.|||||-|+..||+.+ ++| ++-.|.+.+ .-+.|.|. -|.=++.++
T Consensus 49 ~pkNILmIGPTGvGKTeIARrLAkl~---~aP-------FvkveATk~-TEvGYvGrDVEsiIrdLv 104 (442)
T PRK05201 49 TPKNILMIGPTGVGKTEIARRLAKLA---NAP-------FIKVEATKF-TEVGYVGRDVESIIRDLV 104 (442)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH---CCC-------EEEEECCCC-CCCCCCCCCHHHHHHHHH
T ss_conf 64316887888866789999999984---898-------587521310-003435643788999999
No 231
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.40 E-value=1.8e-06 Score=65.67 Aligned_cols=124 Identities=24% Similarity=0.351 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHH---CCCCEEEEEHHHHHCCCCCCHHCCCCC
Q ss_conf 45899999999987752044565787406886143200388999998730---477337720688612465301104780
Q gi|254780163|r 481 GQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFA---LGVQLLRFDMSEYMERHAVSRLIGAPP 557 (798)
Q Consensus 481 GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~---~~~~lir~dmsey~e~~~vs~LiGapp 557 (798)
||..|...-..-+... . .+ .++|+|.||.|+|||.||-++|.. -+.+.+-+.+++++.. |-.+
T Consensus 77 ~q~~al~~a~~y~enf----~-~~--~~gLlF~G~~GTGKThLA~aIan~Li~~G~sVlf~t~~dLl~~-----lr~t-- 142 (242)
T PRK07952 77 GQMNALSKARQYVEEF----D-GN--IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA-----MKDT-- 142 (242)
T ss_pred HHHHHHHHHHHHHHHH----C-CC--CCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH-----HHHH--
T ss_conf 7899999999999865----4-38--8717997899997899999999999987994999779999999-----9999--
Q ss_pred HHCCCCCCCCCCHH--HH-HCCCEEEEECCH--HHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHH
Q ss_conf 00256444310035--55-158517774044--55028999999998777502177997761254299994242145533
Q gi|254780163|r 558 GYVGFGQGGILADS--VD-QNPYSVVLLDEI--EKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMS 632 (798)
Q Consensus 558 GYvG~~egg~Lte~--vr-~~P~sVvl~DEi--EKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~ 632 (798)
| +++ ..+|. ++ -.-+.++.+||+ |+........|.||+|. |.. +-+. .|+|||+..+++.
T Consensus 143 -~---~~~-~~~e~~~l~~l~~~dLLIiDdlG~e~~t~~~~~~lf~iId~-Ry~-------~~kp--~IitTNl~~~eL~ 207 (242)
T PRK07952 143 -F---RNS-ETSEEQLLNDLSNVDLLVIDEIGVQTESRYEKVIINQIVDR-RSS-------SKRP--TGMLTNSNMEEMT 207 (242)
T ss_pred -H---HCC-CCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHH-HHH-------CCCC--EEEEECCCHHHHH
T ss_conf -8---068-75699999986318989873014665888899999999999-997-------1698--8998179999999
Q ss_pred H
Q ss_conf 0
Q gi|254780163|r 633 K 633 (798)
Q Consensus 633 ~ 633 (798)
+
T Consensus 208 ~ 208 (242)
T PRK07952 208 K 208 (242)
T ss_pred H
T ss_conf 9
No 232
>KOG0651 consensus
Probab=98.40 E-value=1.9e-06 Score=65.42 Aligned_cols=157 Identities=23% Similarity=0.353 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCC-------------EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHH
Q ss_conf 1122217899999999862267787-------------489667641166899999999854898834520144554046
Q gi|254780163|r 203 VDILVGRHEEINRTIQILCRRSKNN-------------PLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMG 269 (798)
Q Consensus 203 LDPVIGRd~EI~riiqIL~RR~KNn-------------~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~ 269 (798)
++-+-|=-.-|+.+.+++.=--+|| .+|-|+||.|||-+++..|..+ +.-.+-...+
T Consensus 131 ~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m----------g~nfl~v~ss 200 (388)
T KOG0651 131 FENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM----------GVNFLKVVSS 200 (388)
T ss_pred HHHHCCHHHHHHHHHHHEEEECCCCHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHC----------CCCEEEEEHH
T ss_conf 877178388889988655740248100234577788256876799986459999999865----------9854774476
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCC---------CHHHHHHHHHCCCCEEEEEEC
Q ss_conf 75306343123789999999872038983999736166301554443447---------778888766302660388730
Q gi|254780163|r 270 NLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISV---------DASNLLKPALSSGAVRCIGST 340 (798)
Q Consensus 270 ~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~---------d~an~lkP~L~rg~~~~Igat 340 (798)
+++. +|-||--.-++....+++..-+.|+|||||+.+-|---++|++- ..+|-+.-.=.-|.+.+|.||
T Consensus 201 ~lv~--kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~Imat 278 (388)
T KOG0651 201 ALVD--KYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMAT 278 (388)
T ss_pred HHHH--HHCCCHHHHHHHHHHHHHHHCCEEEEEHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCEEEEC
T ss_conf 6633--00265788999999778652755775101231145773355520599999999998742140120663179853
Q ss_pred CHHHHHHHHHCCHHHHH--HCE-EEEECCCCHHHHHHHH
Q ss_conf 48999998520111432--001-4430687868999999
Q gi|254780163|r 341 TYSEYRQFFEKDKALVR--RFQ-KIDVSEPSIEDAIEIV 376 (798)
Q Consensus 341 T~~ey~~~~e~d~al~r--rF~-~i~v~ep~~~~~~~iL 376 (798)
.-- =--||||-| |.+ .++++=|+...-+.|+
T Consensus 279 Nrp-----dtLdpaLlRpGRldrk~~iPlpne~~r~~I~ 312 (388)
T KOG0651 279 NRP-----DTLDPALLRPGRLDRKVEIPLPNEQARLGIL 312 (388)
T ss_pred CCC-----CCCCHHHCCCCCCCCEECCCCCCHHHCEEEE
T ss_conf 886-----6566554287521110026885544240267
No 233
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.8e-05 Score=58.50 Aligned_cols=97 Identities=30% Similarity=0.512 Sum_probs=71.1
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHCCCCCCC--------CCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCC
Q ss_conf 246653458999999999877520445657--------874068861432003889999987304773377206886124
Q gi|254780163|r 475 LGTVVYGQEEAIKKLSSSIKIARAGLSDPN--------KPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMER 546 (798)
Q Consensus 475 l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~--------rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~ 546 (798)
--.-|.|.|+|.+.+.+-+-- |++|+ =|-|+ |++||+|+|||-|||+.|-.-+.++..+--|+|-|-
T Consensus 148 ~F~DVAG~dEakeel~EiVdf----Lk~p~ky~~lGakiPkGv-lLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDF----LKNPKKYQALGAKIPKGV-LLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred CHHHHCCCHHHHHHHHHHHHH----HHCCHHHHHCCCCCCCCE-EEECCCCCCCHHHHHHHHCCCCCCCEECCCHHHHHH
T ss_conf 756641867999999999998----638556675235345652-685599987278999984546898353034446443
Q ss_pred CCCCHHCCCCCHHCCCCCCCCCCH-HHHHCCCEEEEECCHHH
Q ss_conf 653011047800025644431003-55515851777404455
Q gi|254780163|r 547 HAVSRLIGAPPGYVGFGQGGILAD-SVDQNPYSVVLLDEIEK 587 (798)
Q Consensus 547 ~~vs~LiGappGYvG~~egg~Lte-~vr~~P~sVvl~DEiEK 587 (798)
.+|-|.-+| -.|.+ +-+..| |+|.+|||+.
T Consensus 223 -----fVGvGAsRV-----RdLF~qAkk~aP-~IIFIDEiDA 253 (596)
T COG0465 223 -----FVGVGASRV-----RDLFEQAKKNAP-CIIFIDEIDA 253 (596)
T ss_pred -----HCCCCCHHH-----HHHHHHHHCCCC-CEEEEEHHHH
T ss_conf -----147883888-----999998551599-6698763433
No 234
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=8.2e-06 Score=60.93 Aligned_cols=66 Identities=23% Similarity=0.246 Sum_probs=29.8
Q ss_pred EEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHH
Q ss_conf 3999736166301554443447778888766302--66038873048999998520111432001443068786899999
Q gi|254780163|r 298 AILYIDEIHTLVGAGSASGISVDASNLLKPALSS--GAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEI 375 (798)
Q Consensus 298 ~ilfideih~ligag~~~g~~~d~an~lkP~L~r--g~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~i 375 (798)
-|..|||+|++ +..|+|-|.-.|.- .....|=+||.- .+. =+..-.|-|.+....++.++-...
T Consensus 94 Kv~IIdea~~l---------t~~A~NaLLKtLEEPp~~~~fil~t~~~--~~i---l~TI~SRCq~~~f~~~~~~~i~~~ 159 (303)
T PRK07132 94 KILIIKNIEKT---------SNSSLNALLKTIEEPSKNTYFLLTTKNI--NKV---IPTIVSRCQVINVKEPDQQKILAK 159 (303)
T ss_pred EEEEEECHHHC---------CHHHHHHHHHHCCCCCCCEEEEEEECCH--HHC---CHHHHHCCEEEECCCCCHHHHHHH
T ss_conf 69998165533---------9999999998703898684899972882--438---377863665663788999999999
Q ss_pred HH
Q ss_conf 98
Q gi|254780163|r 376 VK 377 (798)
Q Consensus 376 L~ 377 (798)
|.
T Consensus 160 l~ 161 (303)
T PRK07132 160 LL 161 (303)
T ss_pred HH
T ss_conf 98
No 235
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=98.39 E-value=3.3e-07 Score=70.94 Aligned_cols=107 Identities=25% Similarity=0.326 Sum_probs=62.5
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEE-E--EEEHHHHHCCCC-C---CCHHHHHHHHHHHHHCCCC---
Q ss_conf 7489667641166899999999854898834520144-5--540467530634-3---1237899999998720389---
Q gi|254780163|r 227 NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARI-F--SLDMGNLIAGTR-Y---RGDFEERIKKIVKEIESYA--- 296 (798)
Q Consensus 227 n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i-~--~ld~~~l~ag~~-~---rg~fe~r~~~~~~~~~~~~--- 296 (798)
|++|.|+||||||++++.+|...-.. -.+| + .++...|+ |+. | .|+|+= ..|
T Consensus 1 hVLL~GppG~GKT~l~~~lA~~~~~~-------~~~i~~~~~~~~~Dl~-G~~~~~~~~~~~~~----------~~G~l~ 62 (131)
T pfam07726 1 HVLLEGVPGLAKTLLARTLARSLGLD-------FRRIQFTPDLLPSDIT-GTEVYDQKTREFEF----------RPGPIF 62 (131)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHCCC-------CEEEEECCCCCCCCCC-CCEEECCCCCEEEE----------ECCCCC
T ss_conf 98789899876999999999995998-------1688833776700036-84542378740898----------457310
Q ss_pred CEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCC-------------EEEEEECCHHHHHHHHHCCHHHHHHCE
Q ss_conf 8399973616630155444344777888876630266-------------038873048999998520111432001
Q gi|254780163|r 297 NAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGA-------------VRCIGSTTYSEYRQFFEKDKALVRRFQ 360 (798)
Q Consensus 297 ~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~-------------~~~IgatT~~ey~~~~e~d~al~rrF~ 360 (798)
.-|+|+|||+.. +-++-|.|-++|..+. .++|++.-|.||.-..+-++||..||=
T Consensus 63 ~~vl~lDEin~a---------~~~v~~~Ll~~l~er~v~~~g~~~~~p~~f~viAt~NP~e~~G~~~L~~al~dRF~ 130 (131)
T pfam07726 63 ANVLLADEINRA---------PPKTQSALLEAMQERQVTIGGETHPLPEPFFVLATQNPIEQEGTYPLPEAQLDRFL 130 (131)
T ss_pred CCCEEEEHHHCC---------CHHHHHHHHHHHHCEEEEECCEEEECCCCEEEEECCCCCCCCCCEECCHHHHCCCC
T ss_conf 370564012039---------98999999976326499779988527998499971698755576449988965615
No 236
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=98.38 E-value=6.5e-07 Score=68.83 Aligned_cols=74 Identities=34% Similarity=0.561 Sum_probs=59.8
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCH-HHHHHHHHHHHH----CCCCCE
Q ss_conf 778748966764116689999999985489883452014455404675306343123-789999999872----038983
Q gi|254780163|r 224 SKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGD-FEERIKKIVKEI----ESYANA 298 (798)
Q Consensus 224 ~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~-fe~r~~~~~~~~----~~~~~~ 298 (798)
.|+|.+||||.|-|||=+++-||+.+ +||-...|.+ + +.=|.|.|| -|.=|..+|... .++.+=
T Consensus 151 ~KSNILLiGPTGSGKTLLAqTLA~~L---~VPfAiADAT-------t-LTEAGYVGEDVENIL~~Llq~ad~DV~kA~kG 219 (452)
T TIGR00382 151 SKSNILLIGPTGSGKTLLAQTLARIL---NVPFAIADAT-------T-LTEAGYVGEDVENILLKLLQAADYDVEKAQKG 219 (452)
T ss_pred HCCCEEEECCCCCCHHHHHHHHHHHC---CCCEEECCHH-------H-HHCCCCCCCCHHHHHHHHHHHCCCCHHHHCCC
T ss_conf 00662454688852689999999873---8874211111-------0-20066424228899999987414552452785
Q ss_pred EEEECCHHHH
Q ss_conf 9997361663
Q gi|254780163|r 299 ILYIDEIHTL 308 (798)
Q Consensus 299 ilfideih~l 308 (798)
|.|||||-=|
T Consensus 220 IiYIDEIDKI 229 (452)
T TIGR00382 220 IIYIDEIDKI 229 (452)
T ss_pred EEEEECCCCH
T ss_conf 0898422310
No 237
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.38 E-value=1.7e-06 Score=65.82 Aligned_cols=169 Identities=24% Similarity=0.310 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHH-CCCCCC-EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHH---------------EEEEEEEEH
Q ss_conf 2217899999999862-267787-48966764116689999999985489883452---------------014455404
Q gi|254780163|r 206 LVGRHEEINRTIQILC-RRSKNN-PLYVGDPGVGKTAIAEGFAKQIVDGMVPDILL---------------GARIFSLDM 268 (798)
Q Consensus 206 VIGRd~EI~riiqIL~-RR~KNn-~~lvG~~gvGktaive~la~~i~~~~vp~~l~---------------~~~i~~ld~ 268 (798)
++|-+..+.++..-.. ..+-.+ -++.|+||+|||+.+..||..+...... ... ...+++++.
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPT-GLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHCCCCCCCEEEECC
T ss_conf 4332358999999998658887610037999997899999999996586643-345520022444320256886599773
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHCCC----CCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHC--CCCEEEEEECCH
Q ss_conf 675306343123789999999872038----98399973616630155444344777888876630--266038873048
Q gi|254780163|r 269 GNLIAGTRYRGDFEERIKKIVKEIESY----ANAILYIDEIHTLVGAGSASGISVDASNLLKPALS--SGAVRCIGSTTY 342 (798)
Q Consensus 269 ~~l~ag~~~rg~fe~r~~~~~~~~~~~----~~~ilfideih~ligag~~~g~~~d~an~lkP~L~--rg~~~~IgatT~ 342 (798)
... +...-..+.++.+.+..... +.-|.+|||+..| +.||+|.|...+. ....++|-.|.
T Consensus 82 s~~----~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~m---------t~~A~nallk~lEep~~~~~~il~~n- 147 (325)
T COG0470 82 SDL----RKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKL---------TEDAANALLKTLEEPPKNTRFILITN- 147 (325)
T ss_pred CCC----CCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCC---------CHHHHHHHHHHCCCCCCCEEEEEEEC-
T ss_conf 213----3330069999999986044656677269997320326---------98888767543324888716999749-
Q ss_pred HHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCC
Q ss_conf 999998520111432001443068786899999986127665410351211178999998654201
Q gi|254780163|r 343 SEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFT 408 (798)
Q Consensus 343 ~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~ 408 (798)
.+.+.+. -+..|-+.+.+..|+....+..+. ++++...+..+...+.
T Consensus 148 -~~~~il~---tI~SRc~~i~f~~~~~~~~i~~~e---------------~~~l~~i~~~~~gd~r 194 (325)
T COG0470 148 -DPSKILP---TIRSRCQRIRFKPPSRLEAIAWLE---------------DQGLEEIAAVAEGDAR 194 (325)
T ss_pred -CHHHCHH---HHHHHEEEEECCCCCHHHHHHHHH---------------HHHHHHHHHHHCCHHH
T ss_conf -8555647---877560788767741889999850---------------7579999987040688
No 238
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.37 E-value=3.6e-06 Score=63.46 Aligned_cols=126 Identities=23% Similarity=0.266 Sum_probs=76.0
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCC------------CCHHHHHHHHHHHHH
Q ss_conf 78748966764116689999999985489883452014455404675306343------------123789999999872
Q gi|254780163|r 225 KNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRY------------RGDFEERIKKIVKEI 292 (798)
Q Consensus 225 KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~------------rg~fe~r~~~~~~~~ 292 (798)
.++.+++|+||+|||+++..+|..+.... ..++.++.......... -..-+..+..++..+
T Consensus 2 ~~~ill~G~~GsGKTtl~~~la~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-------GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCC-------CCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 97899999997029999999998726689-------96899875998988898765300011221051999999999999
Q ss_pred CCCCCEEEEECCHHHHHCCCCCCCCC-CCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHCEE
Q ss_conf 03898399973616630155444344-7778888766302660388730489999985201114320014
Q gi|254780163|r 293 ESYANAILYIDEIHTLVGAGSASGIS-VDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQK 361 (798)
Q Consensus 293 ~~~~~~ilfideih~ligag~~~g~~-~d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~ 361 (798)
+.....|+||||++.+.......... ........+......+.+|+++.+ ........+.+||+.
T Consensus 75 ~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~n~----~~~~~~~~~~~~~~~ 140 (148)
T smart00382 75 RKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND----EKDLGPALLRRRFDR 140 (148)
T ss_pred HHCCCCEEEEECCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECC----CCCCCHHHHCCCCCE
T ss_conf 844998999827502147620799999999998517657899899995699----522498770744787
No 239
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.35 E-value=2.4e-06 Score=64.71 Aligned_cols=213 Identities=21% Similarity=0.335 Sum_probs=113.9
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHC--CCCEEEEEHHHHHCCCCCCHHC-CCCCHHCCCC-CCCCC---CHHHHHCC
Q ss_conf 7874068861432003889999987304--7733772068861246530110-4780002564-44310---03555158
Q gi|254780163|r 504 NKPIGCYVFSGPTGVGKTEISKQLAFAL--GVQLLRFDMSEYMERHAVSRLI-GAPPGYVGFG-QGGIL---ADSVDQNP 576 (798)
Q Consensus 504 ~rP~g~flf~GptGvGKTelak~la~~~--~~~lir~dmsey~e~~~vs~Li-GappGYvG~~-egg~L---te~vr~~P 576 (798)
.||- ..+.||+|||||.+||.||+.+ ++.--|+.|-.|-...|-.-.+ |=-|.=.||. ..|.+ +++-+++|
T Consensus 193 tKkn--vIL~G~pGtGKT~lAk~lA~~l~g~~~~~rv~~VqfhpsysYEDfi~Gyrp~~~gf~~~~G~f~~~~~~A~~~p 270 (459)
T PRK11331 193 IKKN--IILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQP 270 (459)
T ss_pred CCCC--EEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCCCEECCCHHHHHHHHHHHCC
T ss_conf 5882--79658999887899999999970788778468998358866178764605688861326836999999998498
Q ss_pred --CEEEEECCHHHCCHH-HHHHHHHHHHHHHCCC--------CC--CCEEC-CCCEEEEEECCCCHHHHHHCCCCCCCCC
Q ss_conf --517774044550289-9999999877750217--------79--97761-2542999942421455330368988211
Q gi|254780163|r 577 --YSVVLLDEIEKSHPD-VLNILLQIMDYGILTD--------QS--GKKIS-FRNVILIMTTNAGALEMSKARIGFGSSR 642 (798)
Q Consensus 577 --~sVvl~DEiEKAh~~-v~~~llqild~G~ltd--------~~--Gr~vd-f~n~iii~TsN~G~~~~~~~~~g~~~~~ 642 (798)
..|+++|||-.|+.. +|-=||-+++.-.=.+ +. |.... =.|..||-|-|..-+-+
T Consensus 271 ~~~y~~iideinr~~~~~~fgel~~liE~dkR~~~~~~~l~ys~~~~~~f~vP~Nl~iigtmNtadrs~----------- 339 (459)
T PRK11331 271 EKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSL----------- 339 (459)
T ss_pred CCCEEEEEEHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEECCCCCEEEEEECCCCCHHH-----------
T ss_conf 987699984320338899999999996412567652256300368885334688659998503341068-----------
Q ss_pred CHHHHHHHHHHHCCHHHHCCCCE--EEECCC------CCHHHHHHHHHHHHHHHHHHHHH------CCCEEEECHHHHHH
Q ss_conf 14889999987288788177682--896288------99999999999999999999986------69889998899999
Q gi|254780163|r 643 NDDADKEALRNFLSPEFLNRLDS--IIPFFP------LSSDIIRQVVHKFIMKLELQLQE------KGISFHFSEEVINW 708 (798)
Q Consensus 643 ~~~~~~~~l~~~f~peflnRid~--ii~F~~------l~~~~~~~i~~~~l~~l~~~l~~------~~i~l~~~~~~~~~ 708 (798)
..+.-+|++.|. |+.-..+ +.-|.. .... +..-+...+..|++++.+ ++..+ --+ |
T Consensus 340 --~~~d~alrRrf~--f~~~~pd~d~~~~~~~l~~~~~~~~-~~~~l~~~l~~LN~rI~~de~lLgrd~~I--GHS---Y 409 (459)
T PRK11331 340 --AVVDYALRRRFS--FIDIEPGFDTPQFRNFLLNKKAEPS-FVESLCQKMNELNQEISKEATILGKGFRI--GHS---Y 409 (459)
T ss_pred --HHHHHHHHHHHC--CEECCCCCCHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHCCCCCCCCCEE--CHH---H
T ss_conf --878999986502--1215898660555433320343314-79999999999999986321137998772--103---2
Q ss_pred HHHCCCC-CCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9971898-101532679999986235999999
Q gi|254780163|r 709 LVSHGYD-VKMGARPLERIIKEHVKVPLADEI 739 (798)
Q Consensus 709 l~~~~~~-~~~GAR~l~r~i~~~i~~~la~~i 739 (798)
+....-. ..-...-++++++..|.+.|-+..
T Consensus 410 F~~~~~~~~~~~~~~L~~I~~~eIiPLLqEYf 441 (459)
T PRK11331 410 FCCGLEDGTSPDTQWLREIVMTDIAPLLEEYF 441 (459)
T ss_pred HCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHC
T ss_conf 06665556643689999999853278778870
No 240
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.35 E-value=6.1e-05 Score=54.68 Aligned_cols=217 Identities=21% Similarity=0.319 Sum_probs=147.2
Q ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH---HCCCCEEEEEHHHHHCCCCCCHHC
Q ss_conf 66534589999999998775204456578740688614320038899999873---047733772068861246530110
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAF---ALGVQLLRFDMSEYMERHAVSRLI 553 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~---~~~~~lir~dmsey~e~~~vs~Li 553 (798)
+.++++...+..+...-++. | .- +.| +|..|-||+||--+||+--. -..++++-+||.-.-|..+-|.|.
T Consensus 204 ~~~v~~S~~mk~~v~qA~k~-A-ml--DAP---LLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElF 276 (511)
T COG3283 204 EQIVAVSPKMKHVVEQAQKL-A-ML--DAP---LLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELF 276 (511)
T ss_pred HHHHHCCHHHHHHHHHHHHH-H-CC--CCC---EEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 77873039999999999865-4-03--787---68744888618899998744384558973676447796667677773
Q ss_pred CCCCH---HCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHH
Q ss_conf 47800---025644431003555158517774044550289999999987775021779977612542999942421455
Q gi|254780163|r 554 GAPPG---YVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALE 630 (798)
Q Consensus 554 GappG---YvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~ 630 (798)
|--|| |+|+=| +..-.-||+|||---.|..+--||.-|.||+..---+.+--.-|.=+|+||-.--.+
T Consensus 277 G~apg~~gk~GffE---------~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~ 347 (511)
T COG3283 277 GHAPGDEGKKGFFE---------QANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVE 347 (511)
T ss_pred CCCCCCCCCCCHHH---------HCCCCEEEEEHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCHHH
T ss_conf 56888777634634---------026974885003324998999999986277600037754578778999616666999
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEE-EECCCC--CHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHH
Q ss_conf 330368988211148899999872887881776828-962889--99999999999999999999866988999889999
Q gi|254780163|r 631 MSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSI-IPFFPL--SSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVIN 707 (798)
Q Consensus 631 ~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~i-i~F~~l--~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~ 707 (798)
+ .-+..|+-.++-|+... +-.-|| ...++.-++..++.+....+.- -.-.+++....
T Consensus 348 l------------------v~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~--p~pkl~~~~~~ 407 (511)
T COG3283 348 L------------------VQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGV--PRPKLAADLLT 407 (511)
T ss_pred H------------------HHCCCHHHHHHHHHHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCC--CCCCCCHHHHH
T ss_conf 9------------------863725887887750134238850006521068999999999997589--98766878999
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 999718981015326799999862
Q gi|254780163|r 708 WLVSHGYDVKMGARPLERIIKEHV 731 (798)
Q Consensus 708 ~l~~~~~~~~~GAR~l~r~i~~~i 731 (798)
+|.+.++-- .-|.|+.+|-+-+
T Consensus 408 ~L~~y~WpG--NVRqL~N~iyRA~ 429 (511)
T COG3283 408 VLTRYAWPG--NVRQLKNAIYRAL 429 (511)
T ss_pred HHHHCCCCC--CHHHHHHHHHHHH
T ss_conf 998779996--0999999999999
No 241
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.35 E-value=1.6e-05 Score=58.88 Aligned_cols=109 Identities=21% Similarity=0.192 Sum_probs=67.4
Q ss_pred EEEEECCHHHCCHHHHHHHHHHHHHHHCC-CCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 17774044550289999999987775021-77997761254299994242145533036898821114889999987288
Q gi|254780163|r 578 SVVLLDEIEKSHPDVLNILLQIMDYGILT-DQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLS 656 (798)
Q Consensus 578 sVvl~DEiEKAh~~v~~~llqild~G~lt-d~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~ 656 (798)
.++=|-|+=|++.+++.-||.+-++|... ++..-.++|- .+||-+|| -++.-. | ....+-
T Consensus 235 Gl~efvE~~K~~~~~L~~lL~atQE~~i~~~~~~~~i~~D-~vIiahsN-e~E~~~-----f------------~~~~~~ 295 (358)
T pfam08298 235 GLMEFVEMFKAPIKVLHPLLTATQEGNYNSTEKFSAIPFD-GIILAHSN-ESEWNS-----F------------KSNKNN 295 (358)
T ss_pred CCEEEHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCEECC-EEEECCCC-HHHHHH-----H------------HCCCCC
T ss_conf 7554098761829999998522124622477875603314-26876898-499998-----7------------448643
Q ss_pred HHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHH
Q ss_conf 7881776828962889999999999999999999998669889998899999997
Q gi|254780163|r 657 PEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVS 711 (798)
Q Consensus 657 peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~ 711 (798)
..|+.|+..|=+=.-|.-.+=.+|.++.+.+-. + ....+.|.+++..+.
T Consensus 296 eA~~dR~~~v~vPY~lr~~eE~kIY~k~l~~s~--~----~~~h~APhtl~~aa~ 344 (358)
T pfam08298 296 EAFLDRIVVIKVPYCLRVSEEIKIYEKLLKESE--L----ADAHCAPHTLEVAAM 344 (358)
T ss_pred HHHHCCEEEEECCCCCCHHHHHHHHHHHHHHCC--C----CCCCCCCCHHHHHHH
T ss_conf 466563799967632671789999999863044--6----677829648999999
No 242
>KOG0734 consensus
Probab=98.35 E-value=9.8e-07 Score=67.56 Aligned_cols=95 Identities=29% Similarity=0.467 Sum_probs=65.8
Q ss_pred HHHHCHHHHHHHHHHHHH-------HHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCC
Q ss_conf 665345899999999987-------7520445657874068861432003889999987304773377206886124653
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIK-------IARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAV 549 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~-------~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~v 549 (798)
+-|-|-|+|-..+-+.+- -.+.|=+ =|-|+ |++||+|+|||.||++.|-.-+.+|..---|||-|-
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGK---LPKGV-LLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm--- 376 (752)
T KOG0734 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGK---LPKGV-LLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM--- 376 (752)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCC---CCCCE-EEECCCCCCHHHHHHHHHCCCCCCEEECCCCCHHHH---
T ss_conf 02147278999999999986090876431475---88853-876899975569999860556897474166204454---
Q ss_pred CHHCCCCCHHCCCCCC--CCCCHHHHHCCCEEEEECCHHH
Q ss_conf 0110478000256444--3100355515851777404455
Q gi|254780163|r 550 SRLIGAPPGYVGFGQG--GILADSVDQNPYSVVLLDEIEK 587 (798)
Q Consensus 550 s~LiGappGYvG~~eg--g~Lte~vr~~P~sVvl~DEiEK 587 (798)
|||-+.- --|..+-+.+--|||+.|||+-
T Consensus 377 ---------~VGvGArRVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734 377 ---------FVGVGARRVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred ---------HHCCCHHHHHHHHHHHHHCCCEEEEEECHHH
T ss_conf ---------2201489999999998734985999720022
No 243
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.7e-05 Score=58.65 Aligned_cols=167 Identities=26% Similarity=0.406 Sum_probs=100.9
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCH-HHHHHHHHHHHH----CCCCCE
Q ss_conf 778748966764116689999999985489883452014455404675306343123-789999999872----038983
Q gi|254780163|r 224 SKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGD-FEERIKKIVKEI----ESYANA 298 (798)
Q Consensus 224 ~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~-fe~r~~~~~~~~----~~~~~~ 298 (798)
.|+|.+|||+.|.|||-+++-||+.+ +||-...+..- +.-+.|.|| -|.-+..++..+ .++..=
T Consensus 96 ~KSNILLiGPTGsGKTlLAqTLAk~L---nVPFaiADATt--------LTEAGYVGEDVENillkLlqaadydV~rAerG 164 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQTLAKIL---NVPFAIADATT--------LTEAGYVGEDVENILLKLLQAADYDVERAERG 164 (408)
T ss_pred EECCEEEECCCCCCHHHHHHHHHHHH---CCCEEECCCCC--------HHHCCCCCHHHHHHHHHHHHHCCCCHHHHHCC
T ss_conf 20317998889975779999999984---89847514441--------21066355008999999998764588888288
Q ss_pred EEEECCHHHHHCCCCCCCCC----------------------------------------CCHHHHH-----------HH
Q ss_conf 99973616630155444344----------------------------------------7778888-----------76
Q gi|254780163|r 299 ILYIDEIHTLVGAGSASGIS----------------------------------------VDASNLL-----------KP 327 (798)
Q Consensus 299 ilfideih~ligag~~~g~~----------------------------------------~d~an~l-----------kP 327 (798)
|.|||||.-|- -.+++.| +|-+|+| |=
T Consensus 165 IIyIDEIDKIa--rkSen~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~Gleki 242 (408)
T COG1219 165 IIYIDEIDKIA--RKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKI 242 (408)
T ss_pred EEEEECHHHHH--CCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHH
T ss_conf 59985102542--0578987234367358999999997075102399988879842048873763467824401039999
Q ss_pred HHCCCCEEEEEEC----------CHHHHHHHHHCCH--------HHHHHCEE-EEECCCCHHHHHHHHH----HHHHHHH
Q ss_conf 6302660388730----------4899999852011--------14320014-4306878689999998----6127665
Q gi|254780163|r 328 ALSSGAVRCIGST----------TYSEYRQFFEKDK--------ALVRRFQK-IDVSEPSIEDAIEIVK----GIKPYFE 384 (798)
Q Consensus 328 ~L~rg~~~~Igat----------T~~ey~~~~e~d~--------al~rrF~~-i~v~ep~~~~~~~iL~----~~~~~ye 384 (798)
.-.|..-+.||-. +..++-+.+|.|- -|--|+-. ..+++.+.++-++||. .+-..|+
T Consensus 243 I~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq 322 (408)
T COG1219 243 IKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQ 322 (408)
T ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCHHHHCCCCEEEEHHHCCHHHHHHHHHCCCHHHHHHHH
T ss_conf 99862687424566445344441288998754868788708838872666326461015999999997265178999999
Q ss_pred HHC-----CCEECCHHHHHHHHHH
Q ss_conf 410-----3512111789999986
Q gi|254780163|r 385 EHH-----QLRYSKEAIRAAVQLS 403 (798)
Q Consensus 385 ~~h-----~v~~~~~al~~av~ls 403 (798)
.-. ...|+++||.+.++.+
T Consensus 323 ~Lf~~d~V~L~F~~~AL~~IA~~A 346 (408)
T COG1219 323 KLFEMDGVELEFTEEALKAIAKKA 346 (408)
T ss_pred HHHCCCCCEEEECHHHHHHHHHHH
T ss_conf 996446916997489999999999
No 244
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=98.32 E-value=3.3e-06 Score=63.77 Aligned_cols=101 Identities=23% Similarity=0.351 Sum_probs=55.3
Q ss_pred EEEEECCCCHHHHHHHHHHHH---HCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHH-HCCCEEEEECC
Q ss_conf 688614320038899999873---04773377206886124653011047800025644431003555-15851777404
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLAF---ALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVD-QNPYSVVLLDE 584 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la~---~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr-~~P~sVvl~DE 584 (798)
+++|.||+|+|||.||.+++. ..+.+..-+.++++.+.-..++- ++ .+.+.++ -.-.-|+++||
T Consensus 49 Nlll~G~~GtGKThLA~Ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~-----------~~-~~~~~l~~~~~~dlLIiDD 116 (178)
T pfam01695 49 NLLLLGPPGVGKTHLACALGHQACRAGYSVLFTRTPDLVEQLKRARG-----------DG-RLARTLQRLAKADLLILDD 116 (178)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHH-----------CC-CHHHHHHHHHCCCEEEEEH
T ss_conf 68998999987899999999999986985999961679999998752-----------67-4999999962589788720
Q ss_pred HH--HCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHH
Q ss_conf 45--5028999999998777502177997761254299994242145533
Q gi|254780163|r 585 IE--KSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMS 632 (798)
Q Consensus 585 iE--KAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~ 632 (798)
+= +..+.-.++|++++++-. +++ . +|.|||....+..
T Consensus 117 lG~~~~s~~~~~~lf~li~~Ry-----e~~-----s-tIiTSN~~~~~W~ 155 (178)
T pfam01695 117 IGYLPLSQEAAHLLFELISDRY-----ERR-----S-TILTSNLPFGEWH 155 (178)
T ss_pred HCCCCCCHHHHHHHHHHHHHHH-----CCC-----C-EEEECCCCHHHHH
T ss_conf 0165689899999999999997-----568-----8-6877689978998
No 245
>KOG0744 consensus
Probab=98.32 E-value=1.2e-05 Score=59.68 Aligned_cols=139 Identities=29% Similarity=0.463 Sum_probs=86.4
Q ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC---------CCCEEEEEH-HHHHCCCCCCHHCCCCCHHCCCCCCCCCC
Q ss_conf 45657874068861432003889999987304---------773377206-88612465301104780002564443100
Q gi|254780163|r 500 LSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL---------GVQLLRFDM-SEYMERHAVSRLIGAPPGYVGFGQGGILA 569 (798)
Q Consensus 500 l~~~~rP~g~flf~GptGvGKTelak~la~~~---------~~~lir~dm-sey~e~~~vs~LiGappGYvG~~egg~Lt 569 (798)
|-.-|| ..|+-||+|+|||-|+|+||.-+ ..-||-++. |=| ||- |.|.|.|.
T Consensus 173 lIt~NR---liLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLF------SKW---------FsESgKlV 234 (423)
T KOG0744 173 LITWNR---LILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLF------SKW---------FSESGKLV 234 (423)
T ss_pred EEEEEE---EEEEECCCCCCHHHHHHHHHHHHEEEECCCCCCCEEEEEEHHHHH------HHH---------HHHHHHHH
T ss_conf 466414---899857999882279999987514652376444069997046788------988---------71211389
Q ss_pred HHH--------HH-CCCEEEEECCHHHC---C--------H----HHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECC
Q ss_conf 355--------51-58517774044550---2--------8----99999999877750217799776125429999424
Q gi|254780163|r 570 DSV--------DQ-NPYSVVLLDEIEKS---H--------P----DVLNILLQIMDYGILTDQSGKKISFRNVILIMTTN 625 (798)
Q Consensus 570 e~v--------r~-~P~sVvl~DEiEKA---h--------~----~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN 625 (798)
.++ .- .-.--||.||+|-- . | .|.|.+|.-+| + --...|.+|+.|||
T Consensus 235 ~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlD--r-------lK~~~NvliL~TSN 305 (423)
T KOG0744 235 AKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLD--R-------LKRYPNVLILATSN 305 (423)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH--H-------HCCCCCEEEEECCC
T ss_conf 99999999997178968999807878889998754137998218999999999899--8-------60479779996262
Q ss_pred CCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 21455330368988211148899999872887881776828962889999999999999999999
Q gi|254780163|r 626 AGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLEL 690 (798)
Q Consensus 626 ~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~ 690 (798)
+-.. +. -.|+.|-|-+..-.|-+...+..|..-.+.++..
T Consensus 306 l~~s---------------------iD----~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~ 345 (423)
T KOG0744 306 LTDS---------------------ID----VAFVDRADIVFYVGPPTAEAIYEILKSCIEELIS 345 (423)
T ss_pred HHHH---------------------HH----HHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 6777---------------------78----8861175421103896399999999999999986
No 246
>KOG2004 consensus
Probab=98.32 E-value=2.3e-05 Score=57.67 Aligned_cols=180 Identities=26% Similarity=0.462 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHHH-CCCCCC-----EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHH--C---C
Q ss_conf 2217899999999862-267787-----489667641166899999999854898834520144554046753--0---6
Q gi|254780163|r 206 LVGRHEEINRTIQILC-RRSKNN-----PLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLI--A---G 274 (798)
Q Consensus 206 VIGRd~EI~riiqIL~-RR~KNn-----~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~--a---g 274 (798)
=.|-++-=+|+++-++ ++-||+ .|++|+||||||+|....|.-+ |...+.+++|.|- | |
T Consensus 413 HYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL----------nRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004 413 HYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL----------NRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHH----------CCCEEEEECCCCCCHHHHCC
T ss_conf 30168899999999998751466788379986899877321899999984----------87469985366342776425
Q ss_pred --CCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCC------CC---HHHHHHHHHC----CCCEEEEEE
Q ss_conf --34312378999999987203898399973616630155444344------77---7888876630----266038873
Q gi|254780163|r 275 --TRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGIS------VD---ASNLLKPALS----SGAVRCIGS 339 (798)
Q Consensus 275 --~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~------~d---~an~lkP~L~----rg~~~~Iga 339 (798)
-.|-|-.-.|+-..++.+... |.+..||||.-| |.|-.+.-+ +| -+|+|--||- -..+-+|+
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~-NPliLiDEvDKl-G~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFic- 559 (906)
T KOG2004 483 HRRTYVGAMPGKIIQCLKKVKTE-NPLILIDEVDKL-GSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFIC- 559 (906)
T ss_pred CCEEEECCCCHHHHHHHHHHCCC-CCEEEEEHHHHH-CCCCCCCHHHHHHHHCCHHHCCCHHHHCCCCCCCHHHEEEEE-
T ss_conf 42110014884899999861778-865885322341-788779868999874396535534542026642111068898-
Q ss_pred CCHHHHHHHHHC-CHHHHHHCEEEEECCCCHHHHHHHHHH-HHHHHHHHC-----CCEECCHHHHHHHHHH
Q ss_conf 048999998520-111432001443068786899999986-127665410-----3512111789999986
Q gi|254780163|r 340 TTYSEYRQFFEK-DKALVRRFQKIDVSEPSIEDAIEIVKG-IKPYFEEHH-----QLRYSKEAIRAAVQLS 403 (798)
Q Consensus 340 tT~~ey~~~~e~-d~al~rrF~~i~v~ep~~~~~~~iL~~-~~~~ye~~h-----~v~~~~~al~~av~ls 403 (798)
|-.. |+. -++|-.|.+.|.+.--..++-+.|-+. +.++--.-| .|.++++|+...++.-
T Consensus 560 -TAN~----idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~Y 625 (906)
T KOG2004 560 -TANV----IDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERY 625 (906)
T ss_pred -ECCC----CCCCCHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHH
T ss_conf -5364----45698566412232203672279899999984125789874998786586299999999999
No 247
>PRK06893 DNA replication initiation factor; Validated
Probab=98.31 E-value=7.6e-05 Score=53.98 Aligned_cols=39 Identities=13% Similarity=0.142 Sum_probs=15.8
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHH
Q ss_conf 4430687868999999861276654103512111789999986
Q gi|254780163|r 361 KIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLS 403 (798)
Q Consensus 361 ~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls 403 (798)
.+.+.+|+.++-..||+.. -.-.|+.++++++.+.++-.
T Consensus 155 ~~~i~~~dd~~~~~iL~~~----a~~rgl~l~~~v~~yl~~r~ 193 (229)
T PRK06893 155 IYQLNDLTDEQKIEVLQRN----AYQRGIELSDETANFLLKRL 193 (229)
T ss_pred EEEECCCCHHHHHHHHHHH----HHHCCCCCCHHHHHHHHHHH
T ss_conf 6996677757999999999----99649999989999999983
No 248
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.31 E-value=7.3e-05 Score=54.12 Aligned_cols=223 Identities=17% Similarity=0.172 Sum_probs=120.9
Q ss_pred HHHHCCHHHHHHHCHHHHHHHHHHHHHH-HHCCCCCCCCCCC--EEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHH
Q ss_conf 4210000246653458999999999877-5204456578740--688614320038899999873047733772068861
Q gi|254780163|r 468 LSNLEKNLGTVVYGQEEAIKKLSSSIKI-ARAGLSDPNKPIG--CYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYM 544 (798)
Q Consensus 468 l~~l~~~l~~~v~GQ~~ai~~v~~~i~~-~~~gl~~~~rP~g--~flf~GptGvGKTelak~la~~~~~~lir~dmsey~ 544 (798)
+..|-+.+--.++|.+..-.++.-.+.- ..-.+.+..+-.| ..|++|-+|+||+.|-|..+.....+...--+
T Consensus 194 ~~~L~~SiaP~I~G~~~vK~allL~L~GG~~~~~~~g~~~Rg~ihiLLvGDPGtgKSqlLk~~~~iaprsvytsG~---- 269 (509)
T smart00350 194 YERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGK---- 269 (509)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECC----
T ss_conf 9999985497323878899999999708876648988504154149984699823629999999858860687344----
Q ss_pred CCCCCCHHCCCCC-HHC-C--CCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCC-EECC-CCE
Q ss_conf 2465301104780-002-5--64443100355515851777404455028999999998777502177997-7612-542
Q gi|254780163|r 545 ERHAVSRLIGAPP-GYV-G--FGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGK-KISF-RNV 618 (798)
Q Consensus 545 e~~~vs~LiGapp-GYv-G--~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr-~vdf-~n~ 618 (798)
..|...|..+-- ... | .=|+|-|.- ..-.|+..||++|...+-...|+..|+.++++=+++- ...+ ..|
T Consensus 270 -gsS~aGLTaav~rd~~~ge~~leaGALVl----AD~GiccIDEfdKm~~~dr~alhEaMEQQtisiaKaGi~~tL~aR~ 344 (509)
T smart00350 270 -GSSAVGLTAAVTRDPETREFTLEGGALVL----ADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARC 344 (509)
T ss_pred -CCCCCCCEEEEEECCCCCCEEECCCCEEC----CCCCEEEEEEHHHCCHHHHHHHHHHHHHCEEEEECCCEEEEEECCC
T ss_conf -45557706899981788837872564120----5675478521320787789999999974877874375179985573
Q ss_pred EEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEEC-CCCCHHHHHHHHHHHHHH----------
Q ss_conf 999942421455330368988211148899999872887881776828962-889999999999999999----------
Q gi|254780163|r 619 ILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPF-FPLSSDIIRQVVHKFIMK---------- 687 (798)
Q Consensus 619 iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F-~~l~~~~~~~i~~~~l~~---------- 687 (798)
-|+.++|- . ++.-.......+ .-.|+|.+|.|+|-|++. ...+++.=..|++..+..
T Consensus 345 sVlAAaNP--------~--~g~yd~~~s~~e--ni~l~~~LLSRFDLIf~l~D~~~~~~D~~ia~hil~~h~~~~~~~~~ 412 (509)
T smart00350 345 SVLAAANP--------I--GGRYDPKLTPEE--NIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDE 412 (509)
T ss_pred EEEEEECC--------C--CCCCCCCCCHHH--HCCCCHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 59986556--------5--563788899999--46898035410238999615898788999999999987415887545
Q ss_pred ----------HHHH--HHHCCCEEEECHHHHHHHHH
Q ss_conf ----------9999--98669889998899999997
Q gi|254780163|r 688 ----------LELQ--LQEKGISFHFSEEVINWLVS 711 (798)
Q Consensus 688 ----------l~~~--l~~~~i~l~~~~~~~~~l~~ 711 (798)
+.+= +++.++.=.+++++.+.|.+
T Consensus 413 ~~~~~~~~~~lrkYI~yar~~~~P~ls~eA~~~i~~ 448 (509)
T smart00350 413 ADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVK 448 (509)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 568868999999999999862899789999999999
No 249
>KOG0989 consensus
Probab=98.30 E-value=2.9e-05 Score=56.94 Aligned_cols=172 Identities=22% Similarity=0.326 Sum_probs=102.2
Q ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC------CCCEEEEEHHHHHCCC---
Q ss_conf 6653458999999999877520445657874068861432003889999987304------7733772068861246---
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL------GVQLLRFDMSEYMERH--- 547 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~------~~~lir~dmsey~e~~--- 547 (798)
..+.||++.|..+.+++.+ + +-| .+||-||.|+|||-+|+++|..+ ....+-.+-|...-..
T Consensus 36 de~~gQe~vV~~L~~a~~~-~------~lp--~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr 106 (346)
T KOG0989 36 DELAGQEHVVQVLKNALLR-R------ILP--HYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVR 106 (346)
T ss_pred HHHCCHHHHHHHHHHHHHH-C------CCC--EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCHH
T ss_conf 7650159999999999860-6------886--078668999867689999999855742355542431366001431006
Q ss_pred ----CCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEE
Q ss_conf ----5301104780002564443100355515851777404455028999999998777502177997761254299994
Q gi|254780163|r 548 ----AVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMT 623 (798)
Q Consensus 548 ----~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~T 623 (798)
..++|.+.-++-.|| --.||-|+.|||-+--..+-|+.|..++|+- -++|.+|+-
T Consensus 107 ~Kik~fakl~~~~~~~~~~----------~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~-----------s~~trFiLI 165 (346)
T KOG0989 107 EKIKNFAKLTVLLKRSDGY----------PCPPFKIIILDECDSMTSDAQAALRRTMEDF-----------SRTTRFILI 165 (346)
T ss_pred HHHCCHHHHHHCCCCCCCC----------CCCCCEEEEEECHHHHHHHHHHHHHHHHHCC-----------CCCEEEEEE
T ss_conf 6523799875025565678----------8986328997416453099999999998625-----------466599997
Q ss_pred CCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECH
Q ss_conf 24214553303689882111488999998728878817768289628899999999999999999999986698899988
Q gi|254780163|r 624 TNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSE 703 (798)
Q Consensus 624 sN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~ 703 (798)
+|-=+..+ +-...|. .-+-|.+|..+++.+.+ ..+. ...| +.+++
T Consensus 166 cnylsrii-------------------------~pi~SRC-~KfrFk~L~d~~iv~rL----~~Ia---~~E~--v~~d~ 210 (346)
T KOG0989 166 CNYLSRII-------------------------RPLVSRC-QKFRFKKLKDEDIVDRL----EKIA---SKEG--VDIDD 210 (346)
T ss_pred CCCHHHCC-------------------------HHHHHHH-HHHCCCCCCHHHHHHHH----HHHH---HHHC--CCCCH
T ss_conf 38856477-------------------------2877467-77128876447899999----9998---8858--99787
Q ss_pred HHHHHHHHCC
Q ss_conf 9999999718
Q gi|254780163|r 704 EVINWLVSHG 713 (798)
Q Consensus 704 ~~~~~l~~~~ 713 (798)
++++++++.+
T Consensus 211 ~al~~I~~~S 220 (346)
T KOG0989 211 DALKLIAKIS 220 (346)
T ss_pred HHHHHHHHHC
T ss_conf 8999999973
No 250
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=98.30 E-value=7.8e-05 Score=53.88 Aligned_cols=247 Identities=18% Similarity=0.292 Sum_probs=172.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHCC---HHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCC
Q ss_conf 789998663102453101110011233421000---02466534589999999998775204456578740688614320
Q gi|254780163|r 441 EKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEK---NLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTG 517 (798)
Q Consensus 441 ~~~i~~~~~~~~~gip~~~~~~~~~~~l~~l~~---~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptG 517 (798)
..||..++.++. ..+..+..+++. |..... .=-+-+|||++-+.+|+..|.+- .+.+ + +.|++|=||
T Consensus 106 d~d~L~liv~RA--f~L~~Le~ENRr-L~~~~~~Gst~~~Gli~~~~~m~kic~tIekv----A~sd--~-TvllLGESG 175 (451)
T TIGR02915 106 DPDVLKLIVDRA--FRLYTLETENRR-LQSALGGGSTALEGLITSSPGMQKICRTIEKV----APSD--I-TVLLLGESG 175 (451)
T ss_pred CHHHHHHHHHHH--HHHHHHHHHHHH-HHHCCCCCCCCCCCEEECCCCHHHHHHHHHHH----CCCC--C-EEEEECCCC
T ss_conf 578999999998--888888887699-87406887410365220685067898886521----2000--0-130104667
Q ss_pred HHHHHHHHHHHHHC---CCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCC-------EEEEECCHHH
Q ss_conf 03889999987304---7733772068861246530110478000256444310035551585-------1777404455
Q gi|254780163|r 518 VGKTEISKQLAFAL---GVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPY-------SVVLLDEIEK 587 (798)
Q Consensus 518 vGKTelak~la~~~---~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~-------sVvl~DEiEK 587 (798)
+||==+||+|-.-+ +++||-|||.-==|-===|-|. |||+ |-.|-|+++.+= .=++||||=-
T Consensus 176 TGKEV~ArA~H~~S~R~~~~FVAINCAAIPEnLLEsELF-------GyEK-GAFTGA~k~T~GKIE~A~~GTLFLDEIGD 247 (451)
T TIGR02915 176 TGKEVLARALHELSDRKDKRFVAINCAAIPENLLESELF-------GYEK-GAFTGAVKQTLGKIEYAHGGTLFLDEIGD 247 (451)
T ss_pred CHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHH-------CCCC-HHHHHHHCCCCCCEEEECCCCCCCCCHHC
T ss_conf 117899989842057897773444167457524667760-------3410-12422003477616750688301111220
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCE---ECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHH-HHHHCCHHHHCCC
Q ss_conf 0289999999987775021779977---61254299994242145533036898821114889999-9872887881776
Q gi|254780163|r 588 SHPDVLNILLQIMDYGILTDQSGKK---ISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEA-LRNFLSPEFLNRL 663 (798)
Q Consensus 588 Ah~~v~~~llqild~G~ltd~~Gr~---vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~-l~~~f~peflnRi 663 (798)
---..+-=||--|.|=.+.==-||. || +=|||-||. +.+.. -...||-.+.=||
T Consensus 248 LP~~LQAKLLRFLQErVIER~GGR~eIPVD---VRvvCATnq-------------------dL~~~i~eg~FREDLfYRl 305 (451)
T TIGR02915 248 LPLNLQAKLLRFLQERVIERLGGREEIPVD---VRVVCATNQ-------------------DLKKMIAEGTFREDLFYRL 305 (451)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCC---EEEEECCCH-------------------HHHHHHHCCCCCCCCEEEE
T ss_conf 676689999987546663105887245614---267503224-------------------6899985489720001346
Q ss_pred CEEE-ECCCC--CHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 8289-62889--99999999999999999999866988999889999999718981015326799999862
Q gi|254780163|r 664 DSII-PFFPL--SSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHV 731 (798)
Q Consensus 664 d~ii-~F~~l--~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i 731 (798)
-+|. ..=|| -.+|..-+++.++.+...... .-...||++++++|-.+.+=-. -|.|...|++-|
T Consensus 306 ~Eisi~iPPLR~R~gDa~lLA~~Fl~rf~~~~k--~~~~~F~~DA~~ale~h~WPGN--vRELEN~vKRAV 372 (451)
T TIGR02915 306 AEISITIPPLRDRDGDAVLLANAFLERFARELK--RKAKGFTDDALRALEAHKWPGN--VRELENKVKRAV 372 (451)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHCCCCCCC--HHHHHCHHHEEE
T ss_conf 667862588998601899999999998878733--0216606999999760699884--154403002134
No 251
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.30 E-value=4.7e-05 Score=55.50 Aligned_cols=207 Identities=16% Similarity=0.294 Sum_probs=119.5
Q ss_pred CHHHHHHHCHHHHHH-HHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH-----HCCCCEEEEEHHHHHCC
Q ss_conf 002466534589999-999998775204456578740688614320038899999873-----04773377206886124
Q gi|254780163|r 473 KNLGTVVYGQEEAIK-KLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAF-----ALGVQLLRFDMSEYMER 546 (798)
Q Consensus 473 ~~l~~~v~GQ~~ai~-~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~-----~~~~~lir~dmsey~e~ 546 (798)
-.+..-|+|...... +.+.++- .+|+.+---+++.|++|+|||.|..+++- .-+...+-+...+|+..
T Consensus 116 yTFdnFVvG~sN~lA~aAA~~Va------~~pg~~yNPLfIyG~~GlGKTHLl~AIgn~~~~~~p~~~v~Y~tae~F~~~ 189 (447)
T PRK00149 116 YTFDNFVVGKSNRLAHAAALAVA------ENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVSSEKFTND 189 (447)
T ss_pred CCCCCCEECCCCHHHHHHHHHHH------HCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHH
T ss_conf 60326222698599999999998------376767785589779988788999999999998589972899549999999
Q ss_pred CCCCHHCCCCCHHCCCCCCCCCCHHHH--HCCCEEEEECCHHH--CCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEE
Q ss_conf 653011047800025644431003555--15851777404455--02899999999877750217799776125429999
Q gi|254780163|r 547 HAVSRLIGAPPGYVGFGQGGILADSVD--QNPYSVVLLDEIEK--SHPDVLNILLQIMDYGILTDQSGKKISFRNVILIM 622 (798)
Q Consensus 547 ~~vs~LiGappGYvG~~egg~Lte~vr--~~P~sVvl~DEiEK--Ah~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~ 622 (798)
..-+ |- .+. ++..| -+..-|+|+|.|.- .....+.-|+++|+ .|.++. + -||+
T Consensus 190 ~v~a-l~-----------~~~-~~~Fr~~yr~~DvLliDDiqfl~gk~~tqeeff~~fn--~l~~~~-k-------qiv~ 246 (447)
T PRK00149 190 FVKA-LR-----------NNA-MEEFKEKYRSVDVLLIDDIQFLAGKEKTQEEFFHTFN--ALHENN-K-------QIVI 246 (447)
T ss_pred HHHH-HH-----------CCC-HHHHHHHHHCCCEEEECHHHHHHCCHHHHHHHHHHHH--HHHHCC-C-------EEEE
T ss_conf 9999-85-----------186-9999999972885432148886055779999999999--999849-9-------6899
Q ss_pred ECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCC--EEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 424214553303689882111488999998728878817768--289628899999999999999999999986698899
Q gi|254780163|r 623 TTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLD--SIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFH 700 (798)
Q Consensus 623 TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid--~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~ 700 (798)
||.---.++ ..|.+.+..|+- -++...|.+.+....|+..... ..+ +.
T Consensus 247 tsd~~P~~l---------------------~~l~~rL~SRf~~Gl~~~i~~Pd~e~r~~Il~~k~~-------~~~--~~ 296 (447)
T PRK00149 247 TSDRPPKEL---------------------EGLEDRLRSRFEWGLTVDIEPPDLETRVAILQKKAE-------EEG--IN 296 (447)
T ss_pred ECCCCHHHC---------------------CCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHH-------HCC--CC
T ss_conf 578896765---------------------651177886763762651059999999999999999-------728--99
Q ss_pred ECHHHHHHHHHCCCCCCCCCHHHHHHHHHH----------HHHHHHHHHHC
Q ss_conf 988999999971898101532679999986----------23599999962
Q gi|254780163|r 701 FSEEVINWLVSHGYDVKMGARPLERIIKEH----------VKVPLADEILF 741 (798)
Q Consensus 701 ~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~----------i~~~la~~il~ 741 (798)
+++++++||+++-.+ -.|.|..++.+. +...++..+|.
T Consensus 297 l~~~v~~~iA~~~~~---nvR~LeGal~~l~a~~~~~~~~i~~~~~~~~l~ 344 (447)
T PRK00149 297 LPNEVLEFIAKRIRS---NIRELEGALNRLVAYASLTGRPITLELAKEALK 344 (447)
T ss_pred CCHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 998999999971268---899999999999999998689999999999999
No 252
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.29 E-value=0.00014 Score=52.18 Aligned_cols=184 Identities=17% Similarity=0.275 Sum_probs=106.1
Q ss_pred CHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH---HCCCCEEEEEHHHHHCCCCC
Q ss_conf 002466534589999999998775204456578740688614320038899999873---04773377206886124653
Q gi|254780163|r 473 KNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAF---ALGVQLLRFDMSEYMERHAV 549 (798)
Q Consensus 473 ~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~---~~~~~lir~dmsey~e~~~v 549 (798)
..+..-|+|....+ +.+++..-. ..+++ .+.+.||+|+|||.|..+.+. ..+.....+.+.++.+.
T Consensus 19 ~tfdnFi~g~n~~~---~~al~~~~~--~~~~~---~l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~~~~~~~--- 87 (235)
T PRK08084 19 ETFASFYPGDNDSL---LAALQNVLR--QEHSG---YIYLWGREGAGRSHLLHAACAELSQRGDAVGYVPLDKRAWF--- 87 (235)
T ss_pred CCHHCCCCCCCHHH---HHHHHHHHH--CCCCC---EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHH---
T ss_conf 66302344886999---999999985--78987---69998999988899999999999707985799877986651---
Q ss_pred CHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHC--CH----HHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEE
Q ss_conf 011047800025644431003555158517774044550--28----999999998777502177997761254299994
Q gi|254780163|r 550 SRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKS--HP----DVLNILLQIMDYGILTDQSGKKISFRNVILIMT 623 (798)
Q Consensus 550 s~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKA--h~----~v~~~llqild~G~ltd~~Gr~vdf~n~iii~T 623 (798)
.|. ..+.+ ..+.+|++|.|+.- .+ .+|++|=.+.+.| +|-|+||
T Consensus 88 ------~~~---------~l~~l--~~~dll~iDDi~~i~g~~~~ee~lF~l~N~~~~~g-------------~~~ll~t 137 (235)
T PRK08084 88 ------VPE---------VLEGM--EQLSLVCIDNIECIAGDELWEMAIFDLYNRILESG-------------KTRLLIT 137 (235)
T ss_pred ------HHH---------HHHHH--HHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHC-------------CCEEEEE
T ss_conf ------799---------99876--41898998274554699789999999999999848-------------9669996
Q ss_pred CCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCC--CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 2421455330368988211148899999872887881776--82896288999999999999999999999866988999
Q gi|254780163|r 624 TNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRL--DSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHF 701 (798)
Q Consensus 624 sN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRi--d~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~ 701 (798)
|+.-...+ ..+-|.+..|+ ..++--.|++.++...|+... ...+|+. +
T Consensus 138 s~~~P~~l---------------------~~~l~DL~SRl~~g~~~~i~~~dde~~~~iL~~~-------a~~rgl~--l 187 (235)
T PRK08084 138 GDRPPRQL---------------------NLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLR-------ARLRGFE--L 187 (235)
T ss_pred CCCCHHHC---------------------CCCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHH-------HHHCCCC--C
T ss_conf 79882430---------------------2312889999956972785599989999999999-------9973999--9
Q ss_pred CHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 88999999971898101532679999986
Q gi|254780163|r 702 SEEVINWLVSHGYDVKMGARPLERIIKEH 730 (798)
Q Consensus 702 ~~~~~~~l~~~~~~~~~GAR~l~r~i~~~ 730 (798)
++++.+||+++... .+ |.|..++.+.
T Consensus 188 ~~~V~~yl~~~~~R-~~--~~L~~~l~~L 213 (235)
T PRK08084 188 PEDVGRFLLKRLDR-EM--RTLFMTLDQL 213 (235)
T ss_pred CHHHHHHHHHHCCC-CH--HHHHHHHHHH
T ss_conf 98999999986158-89--9999999999
No 253
>PRK08903 hypothetical protein; Validated
Probab=98.28 E-value=4.3e-05 Score=55.78 Aligned_cols=161 Identities=19% Similarity=0.292 Sum_probs=96.3
Q ss_pred EEEECCCCHHHHHHHHHHHH---HCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHH
Q ss_conf 88614320038899999873---047733772068861246530110478000256444310035551585177740445
Q gi|254780163|r 510 YVFSGPTGVGKTEISKQLAF---ALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIE 586 (798)
Q Consensus 510 flf~GptGvGKTelak~la~---~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiE 586 (798)
+.+.||+|+|||.|..+.+. ..+...+.+++.++.+. +. + . .-..++++|.|+
T Consensus 45 l~i~G~~G~GKTHLl~a~~~~~~~~~~~~~yl~~~~~~~~-----~~-------~----------~--~~~d~l~iDDi~ 100 (227)
T PRK08903 45 FYLWGEAGSGRSHLLQALVAAASEGGKNARYLDPASPLLA-----FD-------F----------D--PRAELYAVDDVE 100 (227)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHH-----HH-------H----------H--HCCCEEEEECCC
T ss_conf 9998999998889999999999806997499651104577-----74-------2----------0--018989996411
Q ss_pred HCCHH----HHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCC
Q ss_conf 50289----99999998777502177997761254299994242145533036898821114889999987288788177
Q gi|254780163|r 587 KSHPD----VLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNR 662 (798)
Q Consensus 587 KAh~~----v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnR 662 (798)
.-..+ +|+++=.+.+.| ++++++||+..... + .+.|.+.+|
T Consensus 101 ~i~~~~q~~lF~l~N~~~~~~-------------~~~ll~s~~~~p~~--------------------l--~~~~DL~SR 145 (227)
T PRK08903 101 RLDDAQQIALFNLFNRVRAHG-------------KTALLVAGPAAPLA--------------------L--DVREDLRTR 145 (227)
T ss_pred CCCCHHHHHHHHHHHHHHHCC-------------CCEEEECCCCCHHH--------------------C--CCCHHHHHH
T ss_conf 489569999999999999729-------------94899718997120--------------------1--200899999
Q ss_pred CC--EEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHH----------
Q ss_conf 68--289628899999999999999999999986698899988999999971898101532679999986----------
Q gi|254780163|r 663 LD--SIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEH---------- 730 (798)
Q Consensus 663 id--~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~---------- 730 (798)
+- -++...|++.+....|+.+. ..++|+ .+++++.+||+.+.... .|.|..++.+.
T Consensus 146 l~~gl~~~i~~pdde~~~~iL~~~-------a~~rgl--~l~~~v~~yl~~r~~R~---~~~L~~~l~~Ld~~sl~~kr~ 213 (227)
T PRK08903 146 LGWGLVYEVKPLSDEDKIAALKAA-------AAERGL--QLADEVPDYLLTHFRRD---MPSLMALLDALDRYSLEQKRA 213 (227)
T ss_pred HHCCCEEEEECCCHHHHHHHHHHH-------HHHCCC--CCCHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHCCCC
T ss_conf 938973899797999999999999-------996299--99889999999983478---999999999999999982999
Q ss_pred HHHHHHHHHHC
Q ss_conf 23599999962
Q gi|254780163|r 731 VKVPLADEILF 741 (798)
Q Consensus 731 i~~~la~~il~ 741 (798)
|.-|+++++|.
T Consensus 214 iTi~lvkevLa 224 (227)
T PRK08903 214 VTLPLLREMLA 224 (227)
T ss_pred CCHHHHHHHHC
T ss_conf 99999999855
No 254
>PRK06893 DNA replication initiation factor; Validated
Probab=98.28 E-value=1.1e-05 Score=60.02 Aligned_cols=159 Identities=16% Similarity=0.296 Sum_probs=95.1
Q ss_pred EEEEECCCCHHHHHHHHHHH---HHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCH
Q ss_conf 68861432003889999987---304773377206886124653011047800025644431003555158517774044
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLA---FALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEI 585 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la---~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEi 585 (798)
.|.+.||+|+|||.|..+.+ ...+...+.++|++..+- +|- ..+.++ .+.+|++|.|
T Consensus 41 ~l~i~G~~gsGKTHLLqa~~~~~~~~~~~~~yi~~~~~~~~---------~~~---------~l~~l~--~~d~l~iDDi 100 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYF---------SPA---------VLENLE--QQDLVCLDDL 100 (229)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHC---------CHH---------HHHHHH--HCCEEEEECH
T ss_conf 79998999998899999999999971898599973775640---------699---------998765--4797999672
Q ss_pred HHC--CHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCC
Q ss_conf 550--289999999987775021779977612542999942421455330368988211148899999872887881776
Q gi|254780163|r 586 EKS--HPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRL 663 (798)
Q Consensus 586 EKA--h~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRi 663 (798)
+.- .++....|..++. ++.++ .++++++||+.-...+ .+.-|.+..|+
T Consensus 101 ~~i~g~~~~e~~lF~l~N--~l~~~-------~~~~ll~ss~~~p~~l---------------------~~~l~DL~SRl 150 (229)
T PRK06893 101 QAVIGNEEWELAIFDLFN--RIKES-------GKTLLLISANQSPHAL---------------------QIKLPDLASRL 150 (229)
T ss_pred HHHCCCHHHHHHHHHHHH--HHHHC-------CCCEEEEECCCCHHHH---------------------CCHHHHHHHHH
T ss_conf 342488389999999999--99975-------9917998579883322---------------------10026799999
Q ss_pred C--EEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 8--28962889999999999999999999998669889998899999997189810153267999998
Q gi|254780163|r 664 D--SIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKE 729 (798)
Q Consensus 664 d--~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~ 729 (798)
- .++-..|++.+....|+.+. ...+|+ .+++++.+||+++.. +.+ |.|..++++
T Consensus 151 ~~~~~~~i~~~dd~~~~~iL~~~-------a~~rgl--~l~~~v~~yl~~r~~-R~~--~~l~~~l~~ 206 (229)
T PRK06893 151 TWGEIYQLNDLTDEQKIEVLQRN-------AYQRGI--ELSDETANFLLKRLD-RDM--HTLFDALDL 206 (229)
T ss_pred HCCEEEEECCCCHHHHHHHHHHH-------HHHCCC--CCCHHHHHHHHHHHC-CCH--HHHHHHHHH
T ss_conf 68836996677757999999999-------996499--999899999999834-789--999999999
No 255
>pfam02861 Clp_N Clp amino terminal domain. This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site.
Probab=98.28 E-value=1.6e-06 Score=65.97 Aligned_cols=50 Identities=38% Similarity=0.551 Sum_probs=44.8
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHCH--HHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99999982899511999999982074--689999985999899999999996
Q gi|254780163|r 15 ALVLANERNHEYATLEHLLLALIDDS--DAAIVMLSCNVDLKVLKNNLLNYI 64 (798)
Q Consensus 15 A~~lAk~~~H~~Vt~EHLLLaLL~d~--~~~~iL~~~giD~~~Lk~~Le~~L 64 (798)
|+++|++++|+||++||||++|++++ .+..+|..+|+|.+.+++.++..+
T Consensus 1 A~~~A~~~~~~~i~~EHlLlall~~~~~~~~~il~~~g~~~~~l~~~i~~~~ 52 (53)
T pfam02861 1 AQELAKELGHQYIGTEHLLLALLEEDDGIAARLLKKAGVDLDALREAIEKLL 52 (53)
T ss_pred CHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 9888978699853499999999865885899999995989999999999870
No 256
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.27 E-value=3.8e-06 Score=63.33 Aligned_cols=151 Identities=24% Similarity=0.392 Sum_probs=87.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHC--CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHH--------
Q ss_conf 611222178999999998622--6778748966764116689999999985489883452014455404675--------
Q gi|254780163|r 202 KVDILVGRHEEINRTIQILCR--RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNL-------- 271 (798)
Q Consensus 202 KLDPVIGRd~EI~riiqIL~R--R~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l-------- 271 (798)
...++||....++++.+.+.| ++..++++.||+|+||..++..+-..=- -++..++.+|.+++
T Consensus 136 ~~~~liG~S~~m~~v~~~i~~~a~~~~pVLI~GE~GTGK~~~Ar~IH~~S~-------r~~~pfi~vnC~~~~~~~~e~e 208 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSP-------RAKAPFIALNMAAIPKDLIESE 208 (469)
T ss_pred CCCCCEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCC-------CCCCCCEEEECCCCCHHHHHHH
T ss_conf 755654689999999999999858899789989898269999999997488-------7799957876788997789999
Q ss_pred HCCCCCCCHHHHH---HHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCC-------------CEE
Q ss_conf 3063431237899---999998720389839997361663015544434477788887663026-------------603
Q gi|254780163|r 272 IAGTRYRGDFEER---IKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSG-------------AVR 335 (798)
Q Consensus 272 ~ag~~~rg~fe~r---~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg-------------~~~ 335 (798)
+-|. .+|.|..- ..+.+++ ..+=-||+|||+.| +.+.-.-|--+|..| ++|
T Consensus 209 LFG~-~~gaf~ga~~~~~g~~e~---a~~GTLfLdeI~~L---------~~~~Q~kLl~~L~~~~~~~~g~~~~~~~d~R 275 (469)
T PRK10923 209 LFGH-EKGAFTGANTIRQGRFEQ---ADGGTLFLDEIGDM---------PLDVQTRLLRVLADGQFYRVGGYAPVKVDVR 275 (469)
T ss_pred HHCC-CCCCCCCCCCCCCCCHHH---CCCCCEEHHHHHHC---------CHHHHHHHHHHHHCCCEEECCCCCEEEECCE
T ss_conf 7087-667878864245873664---38992656636648---------9999999999985593785799851221437
Q ss_pred EEEECCHHHHHHHHHCCH---HHHHHCEEEEECCCCHHHHH
Q ss_conf 887304899999852011---14320014430687868999
Q gi|254780163|r 336 CIGSTTYSEYRQFFEKDK---ALVRRFQKIDVSEPSIEDAI 373 (798)
Q Consensus 336 ~IgatT~~ey~~~~e~d~---al~rrF~~i~v~ep~~~~~~ 373 (798)
+|.+|+.+ ....++... -|--|+..+.|.=|+-.+-.
T Consensus 276 iIaat~~~-L~~~v~~g~Fr~dLyyrL~~~~I~lPpLReR~ 315 (469)
T PRK10923 276 IIAATHQN-LEQRVQEGKFREDLFHRLNVIRVHLPPLRERR 315 (469)
T ss_pred EEEECCCC-HHHHHHHCCHHHHHHHHHHHHCCCCCCHHHCH
T ss_conf 99707879-99986608177999986442401584654465
No 257
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=98.25 E-value=0.00017 Score=51.52 Aligned_cols=138 Identities=13% Similarity=0.145 Sum_probs=65.8
Q ss_pred CCHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHH--HHCCCCCCEEEECCCCCHHHHHHHHHHHHH----HCCCCCHH
Q ss_conf 3035654-4258877548611222178999999998--622677874896676411668999999998----54898834
Q gi|254780163|r 185 PALSAYC-VDLTEKVKKGKVDILVGRHEEINRTIQI--LCRRSKNNPLYVGDPGVGKTAIAEGFAKQI----VDGMVPDI 257 (798)
Q Consensus 185 ~~LdkFg-~DLTe~AreGKLDPVIGRd~EI~riiqI--L~RR~KNn~~lvG~~gvGktaive~la~~i----~~~~vp~~ 257 (798)
|.-++|. .++.++|-..| .=+||++=++- ..|++|.=-+|.|+||+|||+.|+-||..+ .+..-|..
T Consensus 8 pW~ekyaP~~l~ELAVHKK------KV~eV~~WL~~~~~~~~~~~iLlLtGPaG~GKTTTI~lLAkeLG~ei~EW~NP~~ 81 (490)
T pfam03215 8 LWTEKYKPRRRDELAIHKK------KIAEVDHWLKAVFLESNKQLILLLTGPSGCGKSTTVKVLSKELGIEIIEWSNPEY 81 (490)
T ss_pred CCHHHCCCCCHHHHHHHHH------HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCC
T ss_conf 6414308887899855354------3999999999985477773189987989988999999999975968998148654
Q ss_pred HHEEEE-EEEEH---HHHHCCCCCCCHHHHHHHHHHHH--H--CCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 520144-55404---67530634312378999999987--2--0389839997361663015544434477788887663
Q gi|254780163|r 258 LLGARI-FSLDM---GNLIAGTRYRGDFEERIKKIVKE--I--ESYANAILYIDEIHTLVGAGSASGISVDASNLLKPAL 329 (798)
Q Consensus 258 l~~~~i-~~ld~---~~l~ag~~~rg~fe~r~~~~~~~--~--~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L 329 (798)
..+... +..+- ..-.-+.+---+|++-+..--.. + .....-|++|+|+-+..-. .....-+.|.-+|
T Consensus 82 ~~~~~~~~q~~d~~g~~~~~~~S~~~~F~eFLlr~~ky~sL~~~~~~kriILIEE~Pn~~~~-----d~~~fr~~L~~~L 156 (490)
T pfam03215 82 LHNPDNECQKPDFRGDCIVNSLSQMEQFREFLLRGARYGSLQGGGLKKKLILVEELPNQFYS-----DAEKFREVIREVL 156 (490)
T ss_pred CCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCC-----CHHHHHHHHHHHH
T ss_conf 56775022101212345766663777767887622335654457887359999658874423-----6699999999999
Q ss_pred CCCC
Q ss_conf 0266
Q gi|254780163|r 330 SSGA 333 (798)
Q Consensus 330 ~rg~ 333 (798)
..+.
T Consensus 157 ~s~~ 160 (490)
T pfam03215 157 QSIW 160 (490)
T ss_pred HHCC
T ss_conf 7089
No 258
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=0.00011 Score=52.91 Aligned_cols=197 Identities=18% Similarity=0.221 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCE-EEECCCCCHHHHHHHHHHHHHHCCC----CCHHHHEEEEEEEEHHHHHCCCC--
Q ss_conf 1222178999999998622677874-8966764116689999999985489----88345201445540467530634--
Q gi|254780163|r 204 DILVGRHEEINRTIQILCRRSKNNP-LYVGDPGVGKTAIAEGFAKQIVDGM----VPDILLGARIFSLDMGNLIAGTR-- 276 (798)
Q Consensus 204 DPVIGRd~EI~riiqIL~RR~KNn~-~lvG~~gvGktaive~la~~i~~~~----vp~~l~~~~i~~ld~~~l~ag~~-- 276 (798)
+-+||-+.-++.+.+.+...+=.+. ++.|++|||||+++..+|+.+.... .|..+.+.-.-+.....+.+|+.
T Consensus 23 ~~liGq~~~~~~L~~a~~~gRl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~~~r~i~~g~hpd 102 (352)
T PRK09112 23 NRLFGHEEARAFLAQAYREGRLHHALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASPLWRQIAQGAHPN 102 (352)
T ss_pred HHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC
T ss_conf 46278699999999999849965246535899808999999999998669986668655678887877899997489999
Q ss_pred --------------CCCHH-HHHHHHHHHHHCC----CCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCC--CCEE
Q ss_conf --------------31237-8999999987203----8983999736166301554443447778888766302--6603
Q gi|254780163|r 277 --------------YRGDF-EERIKKIVKEIES----YANAILYIDEIHTLVGAGSASGISVDASNLLKPALSS--GAVR 335 (798)
Q Consensus 277 --------------~rg~f-e~r~~~~~~~~~~----~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~r--g~~~ 335 (798)
.+... =+-++.+.+.+.. .+.-|..||+.|+| +.+++|-|.-.|.. ....
T Consensus 103 l~~i~r~~d~k~~~~~~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m---------~~~aaNALLK~LEEPp~~~~ 173 (352)
T PRK09112 103 LLHLTRPFDEKTGKFKTAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDM---------NRNAANAILKTLEEPPARAL 173 (352)
T ss_pred EEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHH---------HHHHHHHHHHHHHCCCCCEE
T ss_conf 565534322021454335777999999998454886688069998187874---------69999999998534898748
Q ss_pred EEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 88730489999985201114320014430687868999999861276654103512111789999986542015556467
Q gi|254780163|r 336 CIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDK 415 (798)
Q Consensus 336 ~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdk 415 (798)
+|-.||..+ +.. +.+-.|-|++.....+.++....|+.+... .++ ..++++...+.+|.= -|..
T Consensus 174 fiLit~~~~--~ll---~TI~SRCq~~~f~pL~~~di~~~L~~i~~~----~~~-~~~~~~~~l~~~a~G------S~~~ 237 (352)
T PRK09112 174 FILISHSSG--RLL---PTIRSRCQPISLKPLDDDELKKALSHLGSK----QGI-SAGEETEALLQRSEG------SVRK 237 (352)
T ss_pred EEEEECCHH--HCH---HHHHHHCCCCCCCCCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHCC------CHHH
T ss_conf 998869977--776---899974332148893989999999987512----689-987999999987089------9889
Q ss_pred HHHHHHHHHH
Q ss_conf 9889986533
Q gi|254780163|r 416 AIDVIDEAGA 425 (798)
Q Consensus 416 AidllDea~a 425 (798)
|+.|++.-|.
T Consensus 238 Al~L~~~~gl 247 (352)
T PRK09112 238 ALLLLNYGGL 247 (352)
T ss_pred HHHHHCCCHH
T ss_conf 9987448779
No 259
>KOG0726 consensus
Probab=98.24 E-value=3.4e-06 Score=63.65 Aligned_cols=132 Identities=33% Similarity=0.476 Sum_probs=56.7
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHH
Q ss_conf 74896676411668999999998548988345201445540467530634312378999999987203898399973616
Q gi|254780163|r 227 NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIH 306 (798)
Q Consensus 227 n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih 306 (798)
.+||-|+||.|||-++..+|.. .-..+|+ ++ .+-|| .||-|+=-.-++.++.-+..+.+.|.|||||.
T Consensus 221 GVIlyG~PGTGKTLLAKAVANq----TSATFlR---vv---GseLi--QkylGdGpklvRqlF~vA~e~apSIvFiDEId 288 (440)
T KOG0726 221 GVILYGEPGTGKTLLAKAVANQ----TSATFLR---VV---GSELI--QKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 288 (440)
T ss_pred EEEEECCCCCCHHHHHHHHHCC----CCHHHHH---HH---HHHHH--HHHHCCCHHHHHHHHHHHHHCCCCEEEEEHHH
T ss_conf 0588679997536888877245----5212455---65---08999--98736551999999988875298269864001
Q ss_pred HHHCCC---CCCCCC-------CCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHH--HC-EEEEECCCCHHHHH
Q ss_conf 630155---444344-------777888876630266038873048999998520111432--00-14430687868999
Q gi|254780163|r 307 TLVGAG---SASGIS-------VDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVR--RF-QKIDVSEPSIEDAI 373 (798)
Q Consensus 307 ~ligag---~~~g~~-------~d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~r--rF-~~i~v~ep~~~~~~ 373 (798)
.+ |.- +++|+. +..-|-|--.=+||++++|.||.--| .-||||-| |. .+|..+-|+..+-.
T Consensus 289 Ai-GtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie-----~LDPaLiRPGrIDrKIef~~pDe~Tkk 362 (440)
T KOG0726 289 AI-GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE-----TLDPALIRPGRIDRKIEFPLPDEKTKK 362 (440)
T ss_pred HH-CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCC-----CCCHHHCCCCCCCCCCCCCCCCHHHHC
T ss_conf 10-452134788507899999999987426866567758997416534-----467755278754311125797556323
Q ss_pred HHH
Q ss_conf 999
Q gi|254780163|r 374 EIV 376 (798)
Q Consensus 374 ~iL 376 (798)
+|.
T Consensus 363 kIf 365 (440)
T KOG0726 363 KIF 365 (440)
T ss_pred EEE
T ss_conf 156
No 260
>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=98.23 E-value=0.0001 Score=52.97 Aligned_cols=215 Identities=17% Similarity=0.309 Sum_probs=146.8
Q ss_pred CHHHHHHHCHHHHHHHHHHH-------HHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH-------HCCCCEEEE
Q ss_conf 00246653458999999999-------8775204456578740688614320038899999873-------047733772
Q gi|254780163|r 473 KNLGTVVYGQEEAIKKLSSS-------IKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAF-------ALGVQLLRF 538 (798)
Q Consensus 473 ~~l~~~v~GQ~~ai~~v~~~-------i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~-------~~~~~lir~ 538 (798)
+.|.+.+||-...-..|-+. -.|...||.. ..|.--+-|+|.+|+|||..|..+|. --...+|.+
T Consensus 18 ~~l~~~l~Gl~Pvk~r~~~~a~lllv~~~r~~~~l~~-~~P~lhm~ftG~PGtGkttva~~m~~~l~~lGy~r~G~~~~~ 96 (284)
T TIGR02880 18 DQLDRELIGLKPVKTRIREIAALLLVERLRQKLGLAS-AAPSLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSV 96 (284)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 9876762164158899999999999999998742210-488326775168987248999999999987154003626785
Q ss_pred EHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCC---------HHHHHHHHHHHHHHHCCCCC
Q ss_conf 068861246530110478000256444310035551585177740445502---------89999999987775021779
Q gi|254780163|r 539 DMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSH---------PDVLNILLQIMDYGILTDQS 609 (798)
Q Consensus 539 dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh---------~~v~~~llqild~G~ltd~~ 609 (798)
- -.-|+|. ||||... .--|-+++.--+|++.||--.-+ .+-..+|||++++-
T Consensus 97 t---------rddlvGq---y~GhtaP-ktke~lk~a~GGvlfideayyly~P~nerdyG~eaieillq~men~------ 157 (284)
T TIGR02880 97 T---------RDDLVGQ---YIGHTAP-KTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQ------ 157 (284)
T ss_pred E---------HHHHHHH---HHCCCCC-HHHHHHHHHCCCEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHCC------
T ss_conf 3---------0013112---2125772-2689998742873664220332177641022379999999987236------
Q ss_pred CCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHC--CHHHHCCCCEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 9776125429999424214553303689882111488999998728--87881776828962889999999999999999
Q gi|254780163|r 610 GKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFL--SPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMK 687 (798)
Q Consensus 610 Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f--~peflnRid~ii~F~~l~~~~~~~i~~~~l~~ 687 (798)
.- +.+||+. |+ .+.+..+| .|-|-.|+-.-|-|-..+.+++..|...+|.+
T Consensus 158 --r~---~lvvi~a-------------Gy---------~~rm~~f~~snPG~~sr~a~h~~fPdy~~~~l~~ia~~~l~~ 210 (284)
T TIGR02880 158 --RD---DLVVILA-------------GY---------KDRMDSFFESNPGLSSRVAHHVDFPDYSEEELLAIAELMLEE 210 (284)
T ss_pred --CC---CEEEEEE-------------CC---------HHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf --55---3788871-------------70---------788888751178624677643158887767899999998865
Q ss_pred HHHHHHHCCCEEEECHHHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999986698899988999999971898101-532679999986235999999
Q gi|254780163|r 688 LELQLQEKGISFHFSEEVINWLVSHGYDVKM-GARPLERIIKEHVKVPLADEI 739 (798)
Q Consensus 688 l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~-GAR~l~r~i~~~i~~~la~~i 739 (798)
-.-++. -+......+|+..+-..|.| .||+++..|++.=...-...+
T Consensus 211 ~~y~~~-----~~~~~~~~~y~~~r~~~P~f~nars~rna~dr~rlr~a~rl~ 258 (284)
T TIGR02880 211 QQYRLS-----AEAEEALADYIALRRKQPFFANARSIRNALDRARLRQANRLL 258 (284)
T ss_pred HHCCHH-----HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 412111-----889999999999863178314678899999889888899999
No 261
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.23 E-value=7.7e-05 Score=53.92 Aligned_cols=44 Identities=41% Similarity=0.671 Sum_probs=35.7
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCH-HHHEEEEEEEEHHHH
Q ss_conf 748966764116689999999985489883-452014455404675
Q gi|254780163|r 227 NPLYVGDPGVGKTAIAEGFAKQIVDGMVPD-ILLGARIFSLDMGNL 271 (798)
Q Consensus 227 n~~lvG~~gvGktaive~la~~i~~~~vp~-~l~~~~i~~ld~~~l 271 (798)
-++++|+||.|||||+-|+|+-.-. +||- .+.+-.||++++...
T Consensus 67 giLi~GppgTGKTAlA~gIa~eLG~-dvPF~~isgsEiYS~E~kKT 111 (450)
T COG1224 67 GILIVGPPGTGKTALAMGIARELGE-DVPFVAISGSEIYSLEVKKT 111 (450)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC-CCCCEEECCCEEEEECCCHH
T ss_conf 7999789997688999999998589-99821501332233100088
No 262
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.21 E-value=2.2e-05 Score=57.84 Aligned_cols=145 Identities=21% Similarity=0.295 Sum_probs=87.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHC--CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHC-----
Q ss_conf 8611222178999999998622--677874896676411668999999998548988345201445540467530-----
Q gi|254780163|r 201 GKVDILVGRHEEINRTIQILCR--RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIA----- 273 (798)
Q Consensus 201 GKLDPVIGRd~EI~riiqIL~R--R~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a----- 273 (798)
|-.|-+||...-++++.+.+.| ++..++++.||+|+||+.++..+-..=-. .+..++.+|.+.+-.
T Consensus 3 ~~~~~liG~S~~m~~v~~~~~~~A~~~~pVLI~GE~GtGK~~~Ar~IH~~S~r-------~~~pfi~v~C~~l~~~~~e~ 75 (325)
T PRK11608 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSR-------WQGPFISLNCAALNENLLDS 75 (325)
T ss_pred CCCCCCEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCC-------CCCCCEEEECCCCCHHHHHH
T ss_conf 77899858999999999999999688999898898983799999999965886-------79997788779899778899
Q ss_pred ---C--------C--CCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCC--------
Q ss_conf ---6--------3--431237899999998720389839997361663015544434477788887663026--------
Q gi|254780163|r 274 ---G--------T--RYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSG-------- 332 (798)
Q Consensus 274 ---g--------~--~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg-------- 332 (798)
| + ...|-|| ...+--||+|||+.+ +.++-.-|--+|..|
T Consensus 76 ~LFG~~~g~~~~~~~~~~g~le-----------~a~gGTL~L~eI~~l---------~~~~Q~~Ll~~l~~~~~~r~g~~ 135 (325)
T PRK11608 76 ELFGHEAGAFTGAQKRHPGRFE-----------RADGGTLFLDELATA---------PMLVQEKLLRVIEYGELERVGGS 135 (325)
T ss_pred HHCCCCCCCCCCCCCCCCCHHH-----------CCCCCEEEEECHHHC---------CHHHHHHHHHHHHCCCEEECCCC
T ss_conf 8727755676775324687343-----------568986997374547---------99999999999864908857998
Q ss_pred -----CEEEEEECCHHHHHHHHHCCH---HHHHHCEEEEECCCCHHHHH
Q ss_conf -----603887304899999852011---14320014430687868999
Q gi|254780163|r 333 -----AVRCIGSTTYSEYRQFFEKDK---ALVRRFQKIDVSEPSIEDAI 373 (798)
Q Consensus 333 -----~~~~IgatT~~ey~~~~e~d~---al~rrF~~i~v~ep~~~~~~ 373 (798)
++|+|++|+-+ ..+.++... -|-.||..+.|.=|+-.+-.
T Consensus 136 ~~~~~~~RiIa~t~~~-l~~lv~~g~fr~dLy~rL~~~~I~lPpLReR~ 183 (325)
T PRK11608 136 QPLQVNVRLVCATNAD-LPAMVNEGTFRADLLDRLAFDVVQLPPLRERQ 183 (325)
T ss_pred CCCCCCEEEEECCCHH-HHHHHHHCCCHHHHHHHHHHHHCCCCCHHHCC
T ss_conf 7665646887133220-89999839567999856530111586845471
No 263
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.21 E-value=2.6e-05 Score=57.38 Aligned_cols=129 Identities=20% Similarity=0.223 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC---CCCEEEEEHHHHHCCCCCCHHCCCCC
Q ss_conf 458999999999877520445657874068861432003889999987304---77337720688612465301104780
Q gi|254780163|r 481 GQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL---GVQLLRFDMSEYMERHAVSRLIGAPP 557 (798)
Q Consensus 481 GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~---~~~lir~dmsey~e~~~vs~LiGapp 557 (798)
.--+.+..+....+..-..... +-.++||.||||||||.||-++|..+ +...+-+...++.+.-.-.+.-
T Consensus 160 sprenm~~i~~~~~~fi~~F~~---~~~nLlf~G~~G~GKTfLa~~IA~ell~~g~sViy~ta~~L~~~l~~~~~~---- 232 (330)
T PRK06835 160 SPRENMENILEKCLNFIKNFDK---NNENLLFYGNTGTGKTFLSNCIAKELLDRGKTVIYRTSDELIENLREIRFN---- 232 (330)
T ss_pred CHHHHHHHHHHHHHHHHHHCCC---CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHCC----
T ss_conf 9899999999999999872478---888669889999988999999999999879949996299999999997545----
Q ss_pred HHCCCCCC--CCCCHHHHHCCCEEEEECCH--HHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHH
Q ss_conf 00256444--31003555158517774044--550289999999987775021779977612542999942421455330
Q gi|254780163|r 558 GYVGFGQG--GILADSVDQNPYSVVLLDEI--EKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSK 633 (798)
Q Consensus 558 GYvG~~eg--g~Lte~vr~~P~sVvl~DEi--EKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~ 633 (798)
.++ -.+.+.+.. .-++++|++ |...+-+...|.+++++ |+..+ .-.|.|||+.-.++.+
T Consensus 233 -----~~~~~~~~~~~l~~--~DLLIIDDLG~E~~t~~~~~~Lf~iIN~-R~~~~---------k~tIITTNl~~~eL~~ 295 (330)
T PRK06835 233 -----NDNDAPELEDLLIN--CDLLIIDDLGTESITEFSKTELFNLINK-RLLMN---------KKMIISTNLSLEELLK 295 (330)
T ss_pred -----CCCCHHHHHHHHHH--CCEEEEECCCCCCCCHHHHHHHHHHHHH-HHHCC---------CCEEEECCCCHHHHHH
T ss_conf -----76448999999961--8989972103455886899999999999-98679---------9979988999899999
No 264
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=0.00018 Score=51.27 Aligned_cols=193 Identities=20% Similarity=0.214 Sum_probs=114.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCE-EEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEE--------EEEHHHHH
Q ss_conf 611222178999999998622677874-896676411668999999998548988345201445--------54046753
Q gi|254780163|r 202 KVDILVGRHEEINRTIQILCRRSKNNP-LYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIF--------SLDMGNLI 272 (798)
Q Consensus 202 KLDPVIGRd~EI~riiqIL~RR~KNn~-~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~--------~ld~~~l~ 272 (798)
.++.|||-+.-++.+...+...+=.+. +++|+.|+||++.+..+|+.+...+-+..-..+++. -+......
T Consensus 2 ~F~~iiGq~~~~~~L~~ai~~~rl~hAyLF~Gp~G~GK~~~A~~fa~~Ll~~~~~~~~~~~ri~~~nHPDl~~i~P~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIEQNRIAPAYLFAGPEGVGRKLAALRFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCEEEEECCCCC
T ss_conf 83312594999999999998599674487789998329999999999985789999766558751899977886056200
Q ss_pred CCCCCCC-HHH--------------HHHHHHHHHHCC----CCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHC-CC
Q ss_conf 0634312-378--------------999999987203----898399973616630155444344777888876630-26
Q gi|254780163|r 273 AGTRYRG-DFE--------------ERIKKIVKEIES----YANAILYIDEIHTLVGAGSASGISVDASNLLKPALS-SG 332 (798)
Q Consensus 273 ag~~~rg-~fe--------------~r~~~~~~~~~~----~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~-rg 332 (798)
.|..+-. +++ +.++.+...+.. .+.-|..||+.|++ +..|+|-|-=.|. -+
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~idqIR~l~~~l~~~p~~~~~kVvII~~ae~m---------~~~AaNaLLKtLEEP~ 152 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKSPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM---------NEAAANALLKTLEEPG 152 (314)
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHC---------CHHHHHHHHHHHCCCC
T ss_conf 3454557789876530268777879999999999731885688479998897871---------9999999998614787
Q ss_pred CEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCC
Q ss_conf 60388730489999985201114320014430687868999999861276654103512111789999986542015556
Q gi|254780163|r 333 AVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKL 412 (798)
Q Consensus 333 ~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~l 412 (798)
.-.+|=.|+..+ +. =+-+..|-|.|.....+.++-..+|...... . .-.+.. .+.+.+|. --
T Consensus 153 ~~~fILit~~~~--~l---LpTI~SRCQ~i~F~~l~~~~i~~~L~~~~~~--~--~~~~~~---~~l~~~A~------Gs 214 (314)
T PRK07399 153 NGTLILIAPSPE--SL---LPTIVSRCQIIPFYRLSDEQLEQVLKRLGDN--I--NEILDH---PELLALAQ------GS 214 (314)
T ss_pred CCEEEEEECCHH--HC---CHHHHCCCEEEECCCCCHHHHHHHHHHCCCC--C--CCCCCH---HHHHHHHC------CC
T ss_conf 856999979936--49---1466418756338998999999999971664--3--310278---99998817------99
Q ss_pred HHHHHHHHH
Q ss_conf 467988998
Q gi|254780163|r 413 PDKAIDVID 421 (798)
Q Consensus 413 PdkAidllD 421 (798)
|++|++.++
T Consensus 215 pG~a~~~~~ 223 (314)
T PRK07399 215 PGAAIANIE 223 (314)
T ss_pred HHHHHHHHH
T ss_conf 799999999
No 265
>pfam01078 Mg_chelatase Magnesium chelatase, subunit ChlI. Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Probab=98.19 E-value=1.2e-05 Score=59.86 Aligned_cols=144 Identities=24% Similarity=0.377 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHH-HCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEE-------------------
Q ss_conf 221789999999986-226778748966764116689999999985489883452014455-------------------
Q gi|254780163|r 206 LVGRHEEINRTIQIL-CRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFS------------------- 265 (798)
Q Consensus 206 VIGRd~EI~riiqIL-~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~------------------- 265 (798)
|+|.+. .+|.++|= +.. .|.+|+|+||+|||.+++.++.-.-.-..-+.+.-..|++
T Consensus 5 i~GQ~~-akrAl~iAaaG~--H~lLl~GpPG~GKTmlA~rl~~iLP~l~~~e~le~~~i~S~~g~~~~~~l~~~rPfr~P 81 (207)
T pfam01078 5 VKGQEQ-AKRALEIAAAGG--HNLLMIGPPGSGKTMLAKRLPGILPPLTEQEALEVTAIHSVAGLGGDGGLIRRRPFRAP 81 (207)
T ss_pred HCCCHH-HHHHHHHHHCCC--CCEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 638599-999999985478--75897889980299999763014899878998877764230368777774457986578
Q ss_pred ---EEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEE------
Q ss_conf ---40467530634312378999999987203898399973616630155444344777888876630266038------
Q gi|254780163|r 266 ---LDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRC------ 336 (798)
Q Consensus 266 ---ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~------ 336 (798)
....+|+-|-. . ----|+..+-+=|||+||+.-. +-++-+.|...|+.|++.+
T Consensus 82 Hhs~s~~aliGGg~-~--------~~PGeIslAH~GVLFLDE~~Ef---------~~~vle~LrqpLE~~~v~IsRa~~~ 143 (207)
T pfam01078 82 HHSASAAALVGGGS-I--------PRPGEISLAHNGVLFLDELPEF---------SRRVLESLRQPLEDGEITISRARAK 143 (207)
T ss_pred CCCCCHHHCCCCCC-C--------CCCCCEEECCCCEEEECCHHHC---------CHHHHHHHHHHHCCCCEEEEECCCE
T ss_conf 87643633226888-8--------9997066636878884764653---------9889999987660494899956758
Q ss_pred ---------EEEC-----------------CHHHHHHHHHC-CHHHHHHCEE-EEECCCCHH
Q ss_conf ---------8730-----------------48999998520-1114320014-430687868
Q gi|254780163|r 337 ---------IGST-----------------TYSEYRQFFEK-DKALVRRFQK-IDVSEPSIE 370 (798)
Q Consensus 337 ---------Igat-----------------T~~ey~~~~e~-d~al~rrF~~-i~v~ep~~~ 370 (798)
|+|+ |+.+-++|..| ...|-.||.. |.|..++.+
T Consensus 144 ~~~PA~f~LvaA~NPCpCG~~~~~~~~C~C~~~~~~~Y~~rlSgPllDRiDl~v~~~~~~~~ 205 (207)
T pfam01078 144 VTFPARFQLVAAMNPCPCGYLGDPDKRCRCTPRQIRRYLSRLSGPLLDRIDLQVEVPRLSAE 205 (207)
T ss_pred EEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHCCEEEEEECCCCCHH
T ss_conf 98604348888505777787889999757889999999876452202068789977899957
No 266
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.18 E-value=1.4e-05 Score=59.25 Aligned_cols=147 Identities=24% Similarity=0.288 Sum_probs=90.7
Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEE-EEEHHHHHCCCCC-CCHHH---HHHHH
Q ss_conf 9999998622677874896676411668999999998548988345201445-5404675306343-12378---99999
Q gi|254780163|r 213 INRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIF-SLDMGNLIAGTRY-RGDFE---ERIKK 287 (798)
Q Consensus 213 I~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~-~ld~~~l~ag~~~-rg~fe---~r~~~ 287 (798)
|+.. +++-++|-|+||-|.||+|||-++..||.-+..++.|....-..+. +.+-...+-|-+- -+.|+ ..+..
T Consensus 184 i~~~--~~sLktKknvIL~G~pGtGKT~lAk~lA~~l~g~~~~~rv~~VqfhpsysYEDfi~Gyrp~~~gf~~~~G~f~~ 261 (459)
T PRK11331 184 IETI--LKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYN 261 (459)
T ss_pred HHHH--HHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCCCEECCCHHHH
T ss_conf 9999--99854588279658999887899999999970788778468998358866178764605688861326836999
Q ss_pred HHHHHCCCC--CEEEEECCHH------------HHHCCCCCCCCCCCHHHHHHHHHC--------CCCEEEEEECCHHHH
Q ss_conf 998720389--8399973616------------630155444344777888876630--------266038873048999
Q gi|254780163|r 288 IVKEIESYA--NAILYIDEIH------------TLVGAGSASGISVDASNLLKPALS--------SGAVRCIGSTTYSEY 345 (798)
Q Consensus 288 ~~~~~~~~~--~~ilfideih------------~ligag~~~g~~~d~an~lkP~L~--------rg~~~~IgatT~~ey 345 (798)
+.+.+++++ +-++.||||. +++-+-+... .+ .+-.|+.. -..+-+||......
T Consensus 262 ~~~~A~~~p~~~y~~iideinr~~~~~~fgel~~liE~dkR~~-~~---~~~l~ys~~~~~~f~vP~Nl~iigtmNtad- 336 (459)
T PRK11331 262 FCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGE-NW---SVPLTYSENDEERFYVPENVYIIGLMNTAD- 336 (459)
T ss_pred HHHHHHHCCCCCEEEEEEHHHCCCHHHHHHHHHHHHHHCCCCC-CC---EEEEECCCCCCCEECCCCCEEEEEECCCCC-
T ss_conf 9999984989876999843203388999999999964125676-52---256300368885334688659998503341-
Q ss_pred HHHHHCCHHHHHHCEEEEECC
Q ss_conf 998520111432001443068
Q gi|254780163|r 346 RQFFEKDKALVRRFQKIDVSE 366 (798)
Q Consensus 346 ~~~~e~d~al~rrF~~i~v~e 366 (798)
|.+---|.||.|||.-+.+.+
T Consensus 337 rs~~~~d~alrRrf~f~~~~p 357 (459)
T PRK11331 337 RSLAVVDYALRRRFSFIDIEP 357 (459)
T ss_pred HHHHHHHHHHHHHHCCEECCC
T ss_conf 068878999986502121589
No 267
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=0.00039 Score=48.89 Aligned_cols=120 Identities=19% Similarity=0.281 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEEHHHHHCCCCCCHHC--CCCCH
Q ss_conf 58999999999877520445657874068861432003889999987304-7733772068861246530110--47800
Q gi|254780163|r 482 QEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL-GVQLLRFDMSEYMERHAVSRLI--GAPPG 558 (798)
Q Consensus 482 Q~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~-~~~lir~dmsey~e~~~vs~Li--GappG 558 (798)
|..+.+.+..++...|. | -.+||.||.|+||+.+|+.+|..+ .... |. .......+++ |+-|-
T Consensus 9 q~~~~~~L~~~i~~~rl-------~-HA~Lf~Gp~G~GK~~~A~~~A~~llc~~~---~~---~~~~~~~~~i~~g~HPD 74 (319)
T PRK08769 9 QQRAFDQTVAALDAGRL-------G-HGLLICGPEGLGKRAVALALAEHVLASGP---DP---ALAQRTRQLIAAGTHPD 74 (319)
T ss_pred CHHHHHHHHHHHHCCCC-------C-CEEEEECCCCCCHHHHHHHHHHHHHCCCC---CC---CCCCHHHHHHHCCCCCC
T ss_conf 68999999999976994-------2-06875899987899999999999837997---97---65433889996689989
Q ss_pred HCCC----CCC-------------CCCCHHHHHCC----CEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCC
Q ss_conf 0256----444-------------31003555158----51777404455028999999998777502177997761254
Q gi|254780163|r 559 YVGF----GQG-------------GILADSVDQNP----YSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRN 617 (798)
Q Consensus 559 YvG~----~eg-------------g~Lte~vr~~P----~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n 617 (798)
|.-- ++. -.|.+.+...| |-|+++|+.|+..++-.|.||..|+|=- .+
T Consensus 75 ~~~i~~~~~~~~~k~k~~I~IdqiR~l~~~~~~~p~~g~~KV~IId~Ad~mn~~AaNalLK~LEEPp-----------~~ 143 (319)
T PRK08769 75 LQLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRSACNALLKTLEEPS-----------PG 143 (319)
T ss_pred EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCCC-----------CC
T ss_conf 6877534444543112348699999999996137202795699980667528999999999822799-----------88
Q ss_pred EEEEEECCC
Q ss_conf 299994242
Q gi|254780163|r 618 VILIMTTNA 626 (798)
Q Consensus 618 ~iii~TsN~ 626 (798)
++||++|+-
T Consensus 144 ~~~iL~~~~ 152 (319)
T PRK08769 144 RYLWLISAQ 152 (319)
T ss_pred EEEEEEECC
T ss_conf 489998699
No 268
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=0.00051 Score=48.03 Aligned_cols=191 Identities=16% Similarity=0.182 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCE-EEECCCCCHHHHHHHHHHHHHHCCCCCHHHHE-E--EEEEEE----HHHHH-CC-
Q ss_conf 222178999999998622677874-89667641166899999999854898834520-1--445540----46753-06-
Q gi|254780163|r 205 ILVGRHEEINRTIQILCRRSKNNP-LYVGDPGVGKTAIAEGFAKQIVDGMVPDILLG-A--RIFSLD----MGNLI-AG- 274 (798)
Q Consensus 205 PVIGRd~EI~riiqIL~RR~KNn~-~lvG~~gvGktaive~la~~i~~~~vp~~l~~-~--~i~~ld----~~~l~-ag- 274 (798)
-|||-+.-++.+.+-+...+=.+. ++.|++||||++++..+|+.+.....+..... . .-+.++ ....+ +|
T Consensus 18 ~liGqe~~~~~L~~a~~~grl~HA~Lf~Gp~GiGK~tlA~~~A~~ll~~~~~~~~~~~~~~~~l~~~~~~p~~r~i~~~~ 97 (363)
T PRK07471 18 ALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDAVFPPPASLAVDPDHPVARRIAAGA 97 (363)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCC
T ss_conf 31681999999999998599764587679998188999999999985799977777678705312587772899995269
Q ss_pred ---------------CCCCCHH-HHHHHHHHHHHC----CCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCC--C
Q ss_conf ---------------3431237-899999998720----38983999736166301554443447778888766302--6
Q gi|254780163|r 275 ---------------TRYRGDF-EERIKKIVKEIE----SYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSS--G 332 (798)
Q Consensus 275 ---------------~~~rg~f-e~r~~~~~~~~~----~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~r--g 332 (798)
.+.+++. =+-++.+...+. ..+.-|.-||+.|.+ +..++|-|.-.|.- .
T Consensus 98 hpdl~~i~r~~d~k~~~~~~~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~m---------n~~aaNALLK~LEEPP~ 168 (363)
T PRK07471 98 HGGLLTLERSWNEKGKRLRTVITVDEVRETIGFFGLTAAEGGWRVVIVDTADEM---------NANAANALLKVLEEPPA 168 (363)
T ss_pred CCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHH---------CHHHHHHHHHHHCCCCC
T ss_conf 998466762001133321244539999999999724852489669998687873---------88999999997215898
Q ss_pred CEEEEEECC-HHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCC
Q ss_conf 603887304-8999998520111432001443068786899999986127665410351211178999998654201555
Q gi|254780163|r 333 AVRCIGSTT-YSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRK 411 (798)
Q Consensus 333 ~~~~IgatT-~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~ 411 (798)
..-+|=.|+ ++.. =+.+-.|-|.+.....+.++-...|. ..++..++++.+..++.+|.=
T Consensus 169 ~t~fiLit~~~~~l------lpTI~SRCq~~~~~~l~~~~~~~~L~-------~~~~~~~~~~~~~~la~~a~G------ 229 (363)
T PRK07471 169 RSLLLLVSHAPARL------LPTIRSRCRKLRLRPLAPEDVIAALA-------EAGGPALDDAELAALAALAEG------ 229 (363)
T ss_pred CEEEEEEECCHHHC------HHHHHHHCCCCCCCCCCHHHHHHHHH-------HHCCCCCCHHHHHHHHHHCCC------
T ss_conf 83899863997777------79999735242589959999999999-------843899998999999997589------
Q ss_pred CHHHHHHHHHHH
Q ss_conf 646798899865
Q gi|254780163|r 412 LPDKAIDVIDEA 423 (798)
Q Consensus 412 lPdkAidllDea 423 (798)
-|.+|+.|++.-
T Consensus 230 s~~~Al~l~~~~ 241 (363)
T PRK07471 230 SVGRALRLAGGD 241 (363)
T ss_pred CHHHHHHHHCCC
T ss_conf 999999874798
No 269
>KOG0732 consensus
Probab=98.17 E-value=7.5e-06 Score=61.21 Aligned_cols=82 Identities=32% Similarity=0.577 Sum_probs=35.5
Q ss_pred EEECCCCHHHHHHHHHHHHHC--CCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCC--CCCCHHHHHCCCEEEEECCHH
Q ss_conf 861432003889999987304--7733772068861246530110478000256444--310035551585177740445
Q gi|254780163|r 511 VFSGPTGVGKTEISKQLAFAL--GVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQG--GILADSVDQNPYSVVLLDEIE 586 (798)
Q Consensus 511 lf~GptGvGKTelak~la~~~--~~~lir~dmsey~e~~~vs~LiGappGYvG~~eg--g~Lte~vr~~P~sVvl~DEiE 586 (798)
||.||+|+|||-+|++||... +..-+.|.|..=.+ -.| -|||..|- -+|.|--+++-+||+.||||+
T Consensus 303 L~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD--~ls-------kwvgEaERqlrllFeeA~k~qPSIIffdeId 373 (1080)
T KOG0732 303 LFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD--CLS-------KWVGEAERQLRLLFEEAQKTQPSIIFFDEID 373 (1080)
T ss_pred EECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCH--HHC-------CCCCCHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 3028998725688886665405411020244314844--332-------5447577889988988744485177305556
Q ss_pred -----------HCCHHHHHHHHHHHH
Q ss_conf -----------502899999999877
Q gi|254780163|r 587 -----------KSHPDVLNILLQIMD 601 (798)
Q Consensus 587 -----------KAh~~v~~~llqild 601 (798)
+-|..|...||-+||
T Consensus 374 GlapvrSskqEqih~SIvSTLLaLmd 399 (1080)
T KOG0732 374 GLAPVRSSKQEQIHASIVSTLLALMD 399 (1080)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 64656536677744567777887604
No 270
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=98.17 E-value=2.2e-05 Score=57.85 Aligned_cols=113 Identities=30% Similarity=0.421 Sum_probs=85.3
Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCC----HHHHHHH--
Q ss_conf 9999998622677874896676411668999999998548988345201445540467530634312----3789999--
Q gi|254780163|r 213 INRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRG----DFEERIK-- 286 (798)
Q Consensus 213 I~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg----~fe~r~~-- 286 (798)
++-+++.|--..+.|.+++|+||||||++...+|+.+..|-- ....+++.-+|-.+=+|| -.+| ++-.|+.
T Consensus 125 ~~~li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~--~~l~kkv~IiDersEIag-~~~gvpq~~~g~R~dVl 201 (308)
T COG3854 125 ANPLIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGIN--QFLPKKVGIIDERSEIAG-CLNGVPQHGRGRRMDVL 201 (308)
T ss_pred CHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCC--CCCCCEEEEEECCCHHHC-CCCCCCHHHHHHHHHHC
T ss_conf 218899998437224699659988707799999998631511--267732899715004303-43588603232210104
Q ss_pred -------HHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEC
Q ss_conf -------999872038983999736166301554443447778888766302660388730
Q gi|254780163|r 287 -------KIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGST 340 (798)
Q Consensus 287 -------~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~Igat 340 (798)
.+|..+++..+-++.+|||-| -.|+- -+.-++.+| +++|+..
T Consensus 202 d~cpk~~gmmmaIrsm~PEViIvDEIGt----------~~d~~-A~~ta~~~G-Vkli~Ta 250 (308)
T COG3854 202 DPCPKAEGMMMAIRSMSPEVIIVDEIGT----------EEDAL-AILTALHAG-VKLITTA 250 (308)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCC----------HHHHH-HHHHHHHCC-CEEEEEE
T ss_conf 6561788899999954995799834364----------77799-999998548-5899950
No 271
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.16 E-value=0.00021 Score=50.78 Aligned_cols=205 Identities=14% Similarity=0.233 Sum_probs=112.3
Q ss_pred CCHHHHHHHCHHHHHHH-HHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC---CCCEEEEEHHHHHCCC
Q ss_conf 00024665345899999-9999877520445657874068861432003889999987304---7733772068861246
Q gi|254780163|r 472 EKNLGTVVYGQEEAIKK-LSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL---GVQLLRFDMSEYMERH 547 (798)
Q Consensus 472 ~~~l~~~v~GQ~~ai~~-v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~---~~~lir~dmsey~e~~ 547 (798)
+-.+..-|+|-...... .+.++.. +--..++.|---++..|++|.|||.|..+++-.. ....+-+...+|+...
T Consensus 107 ~ytFd~FVvG~~N~lA~~aa~~va~--~~~~~~g~~yNPLfIyG~~GlGKTHLL~AIgn~i~~~~~kV~Yvtae~F~~~~ 184 (455)
T PRK12422 107 EMTFANFLVTPENDLPFRILQEFAK--VSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVSALRESGGKILYVSSELFTEHL 184 (455)
T ss_pred CCCCCCEEECCCCHHHHHHHHHHHH--CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHH
T ss_conf 7835583315860999999999983--75535887678758878999978999999999853799869997499999999
Q ss_pred CCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHH--CCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECC
Q ss_conf 5301104780002564443100355515851777404455--02899999999877750217799776125429999424
Q gi|254780163|r 548 AVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEK--SHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTN 625 (798)
Q Consensus 548 ~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEK--Ah~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN 625 (798)
.-+ | ..+.-...-+.. +-.-|+|+|.|.- .-+..+.-|..+|+ .|.++. --||+||.
T Consensus 185 v~a-i--------~~~~~~~Fr~~y--r~~DvLLIDDIQfl~gK~~tqeEff~tfN--~L~~~~--------KQIVitsD 243 (455)
T PRK12422 185 VSA-I--------RSGEMQRFRSFY--RNVDALFIEDIEVFSGKGATQEEFFHTFN--SLHTEG--------KLIVISSS 243 (455)
T ss_pred HHH-H--------HCCCHHHHHHHH--HCCCEEEEEHHHHHHCCHHHHHHHHHHHH--HHHHCC--------CEEEEECC
T ss_conf 999-9--------758899999999--63887763147887284889999999999--999859--------96999689
Q ss_pred CCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHH
Q ss_conf 21455330368988211148899999872887881776828962889999999999999999999998669889998899
Q gi|254780163|r 626 AGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEV 705 (798)
Q Consensus 626 ~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~ 705 (798)
---.++ ....+.|+..|.- --++.-.|-+.+....|+.... ...+ +.+++++
T Consensus 244 r~P~el-------------~~l~~RL~SRf~~------GL~v~I~~Pd~etr~~Il~~k~-------~~~~--~~l~~ev 295 (455)
T PRK12422 244 YAPGDL-------------KAMEERLISRFEW------GIAIPIHPLTREGLRSFLMRQA-------EQLS--IRIEETA 295 (455)
T ss_pred CCHHHH-------------HHHHHHHHHHHHC------CEEECCCCCCHHHHHHHHHHHH-------HHCC--CCCCHHH
T ss_conf 895765-------------1268999988637------6132168999899999999999-------8718--8884468
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 9999971898101532679999986
Q gi|254780163|r 706 INWLVSHGYDVKMGARPLERIIKEH 730 (798)
Q Consensus 706 ~~~l~~~~~~~~~GAR~l~r~i~~~ 730 (798)
++||+++-.+ ..|.|...+.+.
T Consensus 296 ~~~iA~~i~~---niReLeGal~~l 317 (455)
T PRK12422 296 LDFLIQALSS---NVKTLLHALTLL 317 (455)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHH
T ss_conf 9999999755---179999999999
No 272
>PRK09087 hypothetical protein; Validated
Probab=98.16 E-value=0.00012 Score=52.50 Aligned_cols=171 Identities=19% Similarity=0.291 Sum_probs=79.8
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEE
Q ss_conf 57874068861432003889999987304773377206886124653011047800025644431003555158517774
Q gi|254780163|r 503 PNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLL 582 (798)
Q Consensus 503 ~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl~ 582 (798)
|+-|...+.+.||.|+|||.|+...+...+. +.++...... +.........+++
T Consensus 40 ~~w~~~~~~L~Gp~gsGKTHL~~~~~~~~~a--~~~~~~~~~~------------------------~~~~~~~~~~~~i 93 (226)
T PRK09087 40 PNWPSPVVVLAGPVGSGKTHLASIWREKADA--LLVHPNEIGS------------------------DAANAAAERPVLI 93 (226)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCC--EEECHHHCCH------------------------HHHHHHCCCCEEE
T ss_conf 2677775899899999886999999998099--6836687474------------------------6676532798899
Q ss_pred CCHHHCC-HH--HHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHH
Q ss_conf 0445502-89--99999998777502177997761254299994242145533036898821114889999987288788
Q gi|254780163|r 583 DEIEKSH-PD--VLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEF 659 (798)
Q Consensus 583 DEiEKAh-~~--v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~pef 659 (798)
|.+++.. .+ +|+++=++.+ .++-++|||+.....+ .+. .+.|+..|+-
T Consensus 94 dd~d~~~~dEe~LFhl~N~~~~--------------~~~~LLlts~~~p~~l-----~~~--------L~DL~SRL~~-- 144 (226)
T PRK09087 94 EDIDAGGFDETGLFHLINSVRQ--------------AGTSLLMTSRLWPSAW-----NVK--------LPDLKSRLKA-- 144 (226)
T ss_pred ECCCCCCCCHHHHHHHHHHHHH--------------CCCEEEEECCCCHHHC-----CCC--------CHHHHHHHHC--
T ss_conf 7487777478999999999985--------------3987999889895666-----762--------4689999857--
Q ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHH-------HHHH
Q ss_conf 177682896288999999999999999999999866988999889999999718981015326799999-------8623
Q gi|254780163|r 660 LNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIK-------EHVK 732 (798)
Q Consensus 660 lnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~-------~~i~ 732 (798)
--++-..+.+.+.+..++.+.. ++|| +.+++++++||+.+.--.-..+..+-..|. +.|.
T Consensus 145 ----~~~~~I~~pdD~ll~~~L~k~~-------~~r~--l~l~~~v~~yll~r~~Rs~~~l~~~l~~LD~~SL~~kr~IT 211 (226)
T PRK09087 145 ----ATVVEIGEPDDALLSGVIFKLF-------ADRQ--LYVEPHVVYYLVSRMERSLFAAQTIVERLDRLALERKSRIT 211 (226)
T ss_pred ----CEEEEECCCCHHHHHHHHHHHH-------HHCC--CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf ----8579835999899999999998-------7576--57888899999984588999999999999999998189998
Q ss_pred HHHHHHHHC
Q ss_conf 599999962
Q gi|254780163|r 733 VPLADEILF 741 (798)
Q Consensus 733 ~~la~~il~ 741 (798)
-|++.++|.
T Consensus 212 iplikevL~ 220 (226)
T PRK09087 212 RALAAEVLN 220 (226)
T ss_pred HHHHHHHHH
T ss_conf 999999998
No 273
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.15 E-value=8e-05 Score=53.80 Aligned_cols=118 Identities=30% Similarity=0.368 Sum_probs=75.3
Q ss_pred HHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCC------------------------C
Q ss_conf 6534589999999998775204456578740688614320038899999873047------------------------7
Q gi|254780163|r 478 VVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALG------------------------V 533 (798)
Q Consensus 478 ~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~------------------------~ 533 (798)
.++|+++++..+...+.... +-|- .+||.||+|+|||.+|.+||..+. .
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~------~~~h-alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG------RLPH-ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHP 74 (325)
T ss_pred CCCCCHHHHHHHHHHHHHCC------CCCC-CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCC
T ss_conf 64332358999999998658------8876-1003799999789999999999658664334552002244432025688
Q ss_pred CEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHH----HCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 3377206886124653011047800025644431003555----158517774044550289999999987775021779
Q gi|254780163|r 534 QLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVD----QNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQS 609 (798)
Q Consensus 534 ~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr----~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~ 609 (798)
.++.++-|.-.... ++-++=..+.+..- ..++-||++||+|+-+++..|.|+-.+++-
T Consensus 75 d~lel~~s~~~~~~------------i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep------ 136 (325)
T COG0470 75 DFLELNPSDLRKID------------IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEP------ 136 (325)
T ss_pred CEEEECCCCCCCCC------------CHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCC------
T ss_conf 65997732133330------------069999999986044656677269997320326988887675433248------
Q ss_pred CCEECCCCEEEEEECC
Q ss_conf 9776125429999424
Q gi|254780163|r 610 GKKISFRNVILIMTTN 625 (798)
Q Consensus 610 Gr~vdf~n~iii~TsN 625 (798)
=.||.|||++|
T Consensus 137 -----~~~~~~il~~n 147 (325)
T COG0470 137 -----PKNTRFILITN 147 (325)
T ss_pred -----CCCEEEEEEEC
T ss_conf -----88716999749
No 274
>pfam00493 MCM MCM2/3/5 family.
Probab=98.15 E-value=0.00026 Score=50.12 Aligned_cols=175 Identities=21% Similarity=0.298 Sum_probs=89.1
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHH----HHCCC---CCCCHHHHHHHHHHHHHCCC
Q ss_conf 677874896676411668999999998548988345201445540467----53063---43123789999999872038
Q gi|254780163|r 223 RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGN----LIAGT---RYRGDFEERIKKIVKEIESY 295 (798)
Q Consensus 223 R~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~----l~ag~---~~rg~fe~r~~~~~~~~~~~ 295 (798)
|..-|.+|||+||+|||.+....+. +... -+|.-..++ |.|.. ++-|+|-=+--.+ +-.+
T Consensus 55 Rg~ihiLLvGdPG~gKSqlLk~~~~-~~pr---------~~~tsg~~ss~~GLTa~~~~d~~~~~~~leaGal---vlAd 121 (327)
T pfam00493 55 RGDINVLLVGDPGTAKSQLLKYVAK-LAPR---------AVYTSGKGSSAAGLTAAVVRDPDTGEWTLEAGAL---VLAD 121 (327)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH-HCCC---------CEEECCCCCCCCCCEEEEEEECCCCCEEEECCCE---EECC
T ss_conf 3651189846998156099999998-6887---------0883177665677615899806888369836847---7558
Q ss_pred CCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEE---------------EEEECCHHH--HH------HHHHCC
Q ss_conf 9839997361663015544434477788887663026603---------------887304899--99------985201
Q gi|254780163|r 296 ANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVR---------------CIGSTTYSE--YR------QFFEKD 352 (798)
Q Consensus 296 ~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~---------------~IgatT~~e--y~------~~~e~d 352 (798)
+=|+.|||+.-+ ..-|-+-|+ -+|+.+.+. +|+|+.|.+ |. .-|.-.
T Consensus 122 -~Gv~cIDEfdk~--------~~~d~saL~-EAMEqqtVsIaKaGi~~tL~ar~sVlAaaNP~~g~yd~~~~~~~ni~Lp 191 (327)
T pfam00493 122 -GGVCCIDEFDKM--------NEEDRVAIH-EAMEQQTISIAKAGIVATLNARCSVLAAANPIFGRYDPKKSVAENINLP 191 (327)
T ss_pred -CCEEEEECCCCC--------CHHHHHHHH-HHHHHCEEEEECCCEEEEECCCCEEEEEECCCCCCCCCCCCHHHHCCCC
T ss_conf -982785005558--------876799999-9998681776338538972587179985277677378888988855897
Q ss_pred HHHHHHCEEE--EECCCCHHHHHHHHHHHHHHHHHHC------CCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 1143200144--3068786899999986127665410------3512111789999986542015556467988998
Q gi|254780163|r 353 KALVRRFQKI--DVSEPSIEDAIEIVKGIKPYFEEHH------QLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVID 421 (798)
Q Consensus 353 ~al~rrF~~i--~v~ep~~~~~~~iL~~~~~~ye~~h------~v~~~~~al~~av~ls~ryi~~r~lPdkAidllD 421 (798)
.+|-.||.-| ..+.|+.+.-..|.+.+...+.... ...++.+-+..-+.++.+++.- .+++.|.+.|-
T Consensus 192 ~~lLsRFDLif~l~D~~~~~~D~~ia~~i~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P-~ls~ea~~~i~ 267 (327)
T pfam00493 192 PPLLSRFDLIFVLLDKPDEEKDEELAKHIVDLHRHGEEEEIETEDYVDPELLRKYIAYARENIFP-KLSDEAREKLV 267 (327)
T ss_pred HHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCCHHHHHHHH
T ss_conf 67745010798840689868899999999998744688655568879999999999999852788-77989999999
No 275
>KOG1969 consensus
Probab=98.14 E-value=6.3e-05 Score=54.58 Aligned_cols=170 Identities=22% Similarity=0.310 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHCCCCCCE-EEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHH
Q ss_conf 178999999998622677874-8966764116689999999985489883452014455404675306343123789999
Q gi|254780163|r 208 GRHEEINRTIQILCRRSKNNP-LYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIK 286 (798)
Q Consensus 208 GRd~EI~riiqIL~RR~KNn~-~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~ 286 (798)
+++.|+-.+.-=.++|-+.-. +|-|+||.|||++++-.|.. .|+++++++..-==++ -.+++|+-
T Consensus 308 ~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViAkq----------aGYsVvEINASDeRt~----~~v~~kI~ 373 (877)
T KOG1969 308 PTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIAKQ----------AGYSVVEINASDERTA----PMVKEKIE 373 (877)
T ss_pred CCHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHH----------CCCEEEEECCCCCCCH----HHHHHHHH
T ss_conf 643455632468667984006875368878724799999986----------2854887325554347----88999999
Q ss_pred HHHHHHC----CCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC-----------
Q ss_conf 9998720----3898399973616630155444344777888876630266038873048999998520-----------
Q gi|254780163|r 287 KIVKEIE----SYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEK----------- 351 (798)
Q Consensus 287 ~~~~~~~----~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~----------- 351 (798)
+.+.--. ...++-|.||||. |+-- -|-++|.-.+-+-..+..|---...-+|-=.+
T Consensus 374 ~avq~~s~l~adsrP~CLViDEID-----Ga~~----~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICI 444 (877)
T KOG1969 374 NAVQNHSVLDADSRPVCLVIDEID-----GAPR----AAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICI 444 (877)
T ss_pred HHHHHCCCCCCCCCCCEEEEECCC-----CCCH----HHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHCCCCCCCCEEEE
T ss_conf 988641122568886359984246-----8728----9999999999741614216866320345553046545877898
Q ss_pred -----CHHHH--HHC-EEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHH
Q ss_conf -----11143--200-144306878689999998612766541035121117899999865
Q gi|254780163|r 352 -----DKALV--RRF-QKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSV 404 (798)
Q Consensus 352 -----d~al~--rrF-~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ 404 (798)
-|||. |-| +.|.+..|+...-++-|+-+-. .-+.+...-+|.+..++..
T Consensus 445 CNdLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~----rE~mr~d~~aL~~L~el~~ 501 (877)
T KOG1969 445 CNDLYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICH----RENMRADSKALNALCELTQ 501 (877)
T ss_pred ECCCCCHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHH----HHCCCCCHHHHHHHHHHHC
T ss_conf 64755533331021048999569976689999999976----4157788789999999861
No 276
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.12 E-value=2.4e-05 Score=57.51 Aligned_cols=145 Identities=20% Similarity=0.263 Sum_probs=84.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHC--CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHC------
Q ss_conf 611222178999999998622--677874896676411668999999998548988345201445540467530------
Q gi|254780163|r 202 KVDILVGRHEEINRTIQILCR--RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIA------ 273 (798)
Q Consensus 202 KLDPVIGRd~EI~riiqIL~R--R~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a------ 273 (798)
..+.+||+..-++++.+.+.| .+..++++.||+|+||..++..+-..= .-++..++.+|.+++-.
T Consensus 141 ~~~~lig~S~~m~~v~~~i~~~A~s~~~VLI~GEsGTGKe~~Ar~IH~~S-------~r~~~pFv~vnc~ai~~~l~ese 213 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNS-------RRAKGPFIKVNCAALPESLLESE 213 (457)
T ss_pred CCCCCEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHC-------CCCCCCEEEEECCCCCHHHHHHH
T ss_conf 56774546999999999999984889958998899857899999999837-------98899838764787985778999
Q ss_pred --C----------CCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCC---------
Q ss_conf --6----------3431237899999998720389839997361663015544434477788887663026---------
Q gi|254780163|r 274 --G----------TRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSG--------- 332 (798)
Q Consensus 274 --g----------~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg--------- 332 (798)
| ....|-||+ +.+=-||+|||+.+ +++.-.-|--+|..+
T Consensus 214 LFG~~kgaftga~~~~~G~~e~-----------A~gGTLfLdeI~~l---------~~~~Q~kLLr~L~~~~~~~~g~~~ 273 (457)
T PRK11361 214 LFGHEKGAFTGAQTLRQGLFER-----------ANEGTLLLDEIGEM---------PLVLQAKLLRILQEREFERIGGHQ 273 (457)
T ss_pred HHCCCCCCCCCCCCCCCCCHHH-----------CCCCCEECCCHHHH---------HHHHHHHHHHHHHCCCEEECCCCC
T ss_conf 7187667878853146986133-----------59982631466452---------399999999998649278569971
Q ss_pred ----CEEEEEECCHHHHHHHHHCC---HHHHHHCEEEEECCCCHHHHHH
Q ss_conf ----60388730489999985201---1143200144306878689999
Q gi|254780163|r 333 ----AVRCIGSTTYSEYRQFFEKD---KALVRRFQKIDVSEPSIEDAIE 374 (798)
Q Consensus 333 ----~~~~IgatT~~ey~~~~e~d---~al~rrF~~i~v~ep~~~~~~~ 374 (798)
++|+|+||+.+ ..+.++.- ..|--|+..+.|.=|.-.+-..
T Consensus 274 ~~~~dvRiIaaT~~~-L~~~v~~g~Fr~DLyyrL~~~~i~lPpLReR~e 321 (457)
T PRK11361 274 TIKVDIRIIAATNRD-LQAMVKEGTFREDLFYRLNVIHLILPPLRDRRE 321 (457)
T ss_pred EEEECCEEEECCCCC-HHHHHHCCCCHHHHHHHHCEEEEECCCHHHCHH
T ss_conf 366534899657878-599987583238899530221251738545875
No 277
>KOG0740 consensus
Probab=98.11 E-value=0.00011 Score=52.69 Aligned_cols=128 Identities=27% Similarity=0.357 Sum_probs=72.7
Q ss_pred HHCHHHHHHHHHHHHHHHHC---CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCC
Q ss_conf 53458999999999877520---445657874068861432003889999987304773377206886124653011047
Q gi|254780163|r 479 VYGQEEAIKKLSSSIKIARA---GLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGA 555 (798)
Q Consensus 479 v~GQ~~ai~~v~~~i~~~~~---gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGa 555 (798)
+-|.+.|-..+-.++..--. ....-+.|+.+.|+.||.|+|||-|++++|-.+...+.-+--| .|.+-
T Consensus 155 i~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSas---------sLtsK 225 (428)
T KOG0740 155 IAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISAS---------SLTSK 225 (428)
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHEECCCCCCHHHHHHHHHHHHCCEEEECCHH---------HHHHH
T ss_conf 740566899865423220455376523544531112005898844799999986206657630688---------86532
Q ss_pred CCHHCCCCC-CCCCCHHH-HHCCCEEEEECCHHH--------CCHH----HHHHHHHHHHHHHCCCCCCCEECCCCEEEE
Q ss_conf 800025644-43100355-515851777404455--------0289----999999987775021779977612542999
Q gi|254780163|r 556 PPGYVGFGQ-GGILADSV-DQNPYSVVLLDEIEK--------SHPD----VLNILLQIMDYGILTDQSGKKISFRNVILI 621 (798)
Q Consensus 556 ppGYvG~~e-gg~Lte~v-r~~P~sVvl~DEiEK--------Ah~~----v~~~llqild~G~ltd~~Gr~vdf~n~iii 621 (798)
|||-.| ......+| |..-+||++.|||++ +|+. -...|+|.. |..+-... +.++|
T Consensus 226 ---~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~--~~~s~~~d------rvlvi 294 (428)
T KOG0740 226 ---YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFD--GKNSAPDD------RVLVI 294 (428)
T ss_pred ---CCCHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCHHHHHHHHHHHC--CCCCCCCC------EEEEE
T ss_conf ---46707789999999987139708984025678863687545445556557776540--44578887------07998
Q ss_pred EECCC
Q ss_conf 94242
Q gi|254780163|r 622 MTTNA 626 (798)
Q Consensus 622 ~TsN~ 626 (798)
-|||.
T Consensus 295 gaTN~ 299 (428)
T KOG0740 295 GATNR 299 (428)
T ss_pred ECCCC
T ss_conf 15888
No 278
>KOG0726 consensus
Probab=98.10 E-value=1.2e-05 Score=59.71 Aligned_cols=158 Identities=27% Similarity=0.451 Sum_probs=101.2
Q ss_pred CHHHHHHHHHHHHHH--------HHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHH
Q ss_conf 458999999999877--------520445657874068861432003889999987304773377206886124653011
Q gi|254780163|r 481 GQEEAIKKLSSSIKI--------ARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRL 552 (798)
Q Consensus 481 GQ~~ai~~v~~~i~~--------~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~L 552 (798)
|-+.-|..+-+++-. -.-|++.| -|+.| .|++|+|||.|||++|-...--|+|+--||...+
T Consensus 189 Gle~QiQEiKEsvELPLthPE~YeemGikpP---KGVIl-yG~PGTGKTLLAKAVANqTSATFlRvvGseLiQk------ 258 (440)
T KOG0726 189 GLESQIQEIKESVELPLTHPEYYEEMGIKPP---KGVIL-YGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK------ 258 (440)
T ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHCCCCCC---CEEEE-ECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH------
T ss_conf 5789999999863388898789997288999---70588-6799975368888772455212455650899998------
Q ss_pred CCCCCHHCCCCCCCCCCHHHH----HCCCEEEEECCHHH-----------CCHHHHHHHHHHHHHHHCCCCCCCEECCCC
Q ss_conf 047800025644431003555----15851777404455-----------028999999998777502177997761254
Q gi|254780163|r 553 IGAPPGYVGFGQGGILADSVD----QNPYSVVLLDEIEK-----------SHPDVLNILLQIMDYGILTDQSGKKISFRN 617 (798)
Q Consensus 553 iGappGYvG~~egg~Lte~vr----~~P~sVvl~DEiEK-----------Ah~~v~~~llqild~G~ltd~~Gr~vdf~n 617 (798)
|.| +|-.|...+- -+.-|+|+.|||+- +.++|+..+|.+|..=-=.|+.| +
T Consensus 259 ------ylG--dGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrg------D 324 (440)
T KOG0726 259 ------YLG--DGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRG------D 324 (440)
T ss_pred ------HHC--CCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC------C
T ss_conf ------736--55199999998887529826986400110452134788507899999999987426866567------7
Q ss_pred EEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf 29999424214553303689882111488999998728878817768289628899999999999999
Q gi|254780163|r 618 VILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFI 685 (798)
Q Consensus 618 ~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l 685 (798)
.-+||.+|- | +...++| .|| +|||.-|-|.--+...-++|..+.-
T Consensus 325 vKvimATnr----i-------------e~LDPaL---iRP---GrIDrKIef~~pDe~TkkkIf~IHT 369 (440)
T KOG0726 325 VKVIMATNR----I-------------ETLDPAL---IRP---GRIDRKIEFPLPDEKTKKKIFQIHT 369 (440)
T ss_pred EEEEEECCC----C-------------CCCCHHH---CCC---CCCCCCCCCCCCCHHHHCEEEEEEE
T ss_conf 589974165----3-------------4467755---278---7543111257975563231568750
No 279
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.09 E-value=0.00049 Score=48.18 Aligned_cols=207 Identities=19% Similarity=0.287 Sum_probs=116.9
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCC-CCEEEE-------EHHHHHCCCCCCHH
Q ss_conf 4589999999998775204456578740688614320038899999873047-733772-------06886124653011
Q gi|254780163|r 481 GQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALG-VQLLRF-------DMSEYMERHAVSRL 552 (798)
Q Consensus 481 GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~-~~lir~-------dmsey~e~~~vs~L 552 (798)
.+.+|...+..++ .. ++ |.-+++|+.|+|||.+.+.|...+. ...+.+ ..+|+.. .+..-
T Consensus 27 ~h~~al~~L~~~l-------~~-~~--g~~lltGe~GtGKTtllr~l~~~l~~~~~~~~~i~~~~l~~~~ll~--~i~~~ 94 (269)
T TIGR03015 27 GHKRAMAYLEYGL-------SQ-RE--GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLR--MVAAD 94 (269)
T ss_pred HHHHHHHHHHHHH-------HC-CC--CEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHH--HHHHH
T ss_conf 6999999999999-------64-89--6599972998988999999998459345489997699999999999--99998
Q ss_pred CCCCCHHCCCCCCC---CCC----HHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECC
Q ss_conf 04780002564443---100----35551585177740445502899999999877750217799776125429999424
Q gi|254780163|r 553 IGAPPGYVGFGQGG---ILA----DSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTN 625 (798)
Q Consensus 553 iGappGYvG~~egg---~Lt----e~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN 625 (798)
.|.||... +... +|. +...+.-..|+++||-.+-.+++++-|-.++. .-+|+.. =.-+|+.
T Consensus 95 lg~~~~~~--~~~~~~~~l~~~L~~~~~~g~~~vliIDEAq~L~~~~Le~Lr~L~n--~e~~~~~------ll~iiL~-- 162 (269)
T TIGR03015 95 FGLETEGR--DKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSN--FQTDNAK------LLQIFLV-- 162 (269)
T ss_pred CCCCCCCC--CHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHC--CCCCCCC------CEEEEEE--
T ss_conf 59898898--9999999999999999966994699972422199999999999970--1358887------0489995--
Q ss_pred CCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHH
Q ss_conf 21455330368988211148899999872887881776828962889999999999999999999998669889998899
Q gi|254780163|r 626 AGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEV 705 (798)
Q Consensus 626 ~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~ 705 (798)
|.-++ .+.++..--+.|-.||..-+...||+.++...-++-.|+.. ..+-..-+++++
T Consensus 163 -GqpeL----------------~~~L~~~~~~~l~qRI~~~~~L~pl~~eet~~YI~~RL~~A-----G~~~~~~Ft~~A 220 (269)
T TIGR03015 163 -GQPEF----------------RETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERA-----GNRDAPVFSEGA 220 (269)
T ss_pred -CCHHH----------------HHHHCCCCHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHC-----CCCCCCCCCHHH
T ss_conf -78679----------------99872740254555076799847999899999999999866-----999999859999
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999718981015326799999862359999996
Q gi|254780163|r 706 INWLVSHGYDVKMGARPLERIIKEHVKVPLADEIL 740 (798)
Q Consensus 706 ~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il 740 (798)
++.|.+.. +.+-|.|.+.-...|-....
T Consensus 221 ~~~I~~~S-------~G~PR~IN~Lc~~aLl~a~~ 248 (269)
T TIGR03015 221 FDAIHRFS-------RGIPRLINILCDRLLLSAFL 248 (269)
T ss_pred HHHHHHHC-------CCCHHHHHHHHHHHHHHHHH
T ss_conf 99999986-------99008999999999999999
No 280
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.09 E-value=7.5e-05 Score=54.01 Aligned_cols=176 Identities=20% Similarity=0.304 Sum_probs=90.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHC--CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHH--------
Q ss_conf 611222178999999998622--6778748966764116689999999985489883452014455404675--------
Q gi|254780163|r 202 KVDILVGRHEEINRTIQILCR--RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNL-------- 271 (798)
Q Consensus 202 KLDPVIGRd~EI~riiqIL~R--R~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l-------- 271 (798)
-++.++|.+.-++++++--.| +..-+++|.||+|+||+.++..+- +.. .-++..++.+|-+++
T Consensus 323 ~f~~l~g~s~~~~~~~~~a~~~a~~~~pVLI~GE~GtGKe~lAraIH----~~S---~r~~~pfv~vnC~ai~~~~~e~e 395 (639)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKSSFPILLCGEEGVGKALLAQAIH----NES---ERAAGPYIAVNCQLLPDEALAEE 395 (639)
T ss_pred CHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHH----HCC---CCCCCCEEEEECCCCCHHHHHHH
T ss_conf 85544679999999999999996889968988989810999999999----557---77899818987898984678998
Q ss_pred HCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCC-------------CEEEEE
Q ss_conf 3063431237899999998720389839997361663015544434477788887663026-------------603887
Q gi|254780163|r 272 IAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSG-------------AVRCIG 338 (798)
Q Consensus 272 ~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg-------------~~~~Ig 338 (798)
+-|.. .|.......+.+ .....=.||+|||+.| +++.-.-|--+|..| ++|+|+
T Consensus 396 lfG~~-~~~~~~g~~g~~---e~A~gGTL~LdeI~~l---------p~~~Q~~LlrvL~~~~~~r~g~~~~~~vdvRiia 462 (639)
T PRK11388 396 FLGSD-RTDSENGRLSKF---ELAHGGTLFLEKVEYL---------SVELQSALLQVLKTGVITRLDSRRLIPVDVRVIA 462 (639)
T ss_pred HCCCC-CCCCCCCCCCHH---HCCCCCEEEECCHHHC---------CHHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEE
T ss_conf 73877-676434668624---4036982884672649---------9999999999986593785699946664279997
Q ss_pred ECCHHHHHHHHHCCH---HHHHHCEEEEECCCCHHHHH---H-HHHHHHHHHHHHC--CCEECCHHHHH
Q ss_conf 304899999852011---14320014430687868999---9-9986127665410--35121117899
Q gi|254780163|r 339 STTYSEYRQFFEKDK---ALVRRFQKIDVSEPSIEDAI---E-IVKGIKPYFEEHH--QLRYSKEAIRA 398 (798)
Q Consensus 339 atT~~ey~~~~e~d~---al~rrF~~i~v~ep~~~~~~---~-iL~~~~~~ye~~h--~v~~~~~al~~ 398 (798)
+|+.+- ...++... .|--|+....|.=|.-.+-. . +.+.+-..+...+ .+.++++|+..
T Consensus 463 at~~~l-~~~v~~g~fr~dLyyrl~~~~i~lPpLReR~~Di~~L~~~~l~~~~~~~~~~~~ls~~a~~~ 530 (639)
T PRK11388 463 TTTADL-AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALAR 530 (639)
T ss_pred ECCHHH-HHHHHCCCCHHHHHHHHHHHHCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 364508-99987498549999876744105733232534399999999999999719999989999999
No 281
>KOG0729 consensus
Probab=98.09 E-value=6.1e-06 Score=61.86 Aligned_cols=123 Identities=28% Similarity=0.485 Sum_probs=85.2
Q ss_pred HCHHHHHHHHHHHH--------HHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCH
Q ss_conf 34589999999998--------7752044565787406886143200388999998730477337720688612465301
Q gi|254780163|r 480 YGQEEAIKKLSSSI--------KIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSR 551 (798)
Q Consensus 480 ~GQ~~ai~~v~~~i--------~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~ 551 (798)
=|-.+-|+.+-+.+ +-...|+.+| -|++|+ ||+|+|||.+|+++|--..-.|||+=-||.-.+
T Consensus 180 GGCKeqIEklREVVE~PlL~PErfv~LGIdPP---KGvlly-GPPGtGKTL~ARAVANRTdAcFIRViGSELVQK----- 250 (435)
T KOG0729 180 GGCKEQIEKLREVVELPLLHPERFVNLGIDPP---KGVLLY-GPPGTGKTLCARAVANRTDACFIRVIGSELVQK----- 250 (435)
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCC---CCEEEE-CCCCCCHHHHHHHHHCCCCCEEEEEHHHHHHHH-----
T ss_conf 36699999999988432558888875278998---733786-899986108999874566745876311899999-----
Q ss_pred HCCCCCHHCCCCCCC----CCCHHHHHCCCEEEEECCHHH-----------CCHHHHHHHHHHHHHHHCCCCCCCEECCC
Q ss_conf 104780002564443----100355515851777404455-----------02899999999877750217799776125
Q gi|254780163|r 552 LIGAPPGYVGFGQGG----ILADSVDQNPYSVVLLDEIEK-----------SHPDVLNILLQIMDYGILTDQSGKKISFR 616 (798)
Q Consensus 552 LiGappGYvG~~egg----~Lte~vr~~P~sVvl~DEiEK-----------Ah~~v~~~llqild~G~ltd~~Gr~vdf~ 616 (798)
||| ||- .|.+.-|.+--|+|+||||+- ...+|+...|.++-.=-=.|..|
T Consensus 251 -------YvG--EGARMVRElFeMAr~KKACiiFFDEiDAiGGaRFDDg~ggDNEVQRTMLEli~QLDGFDpRG------ 315 (435)
T KOG0729 251 -------YVG--EGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG------ 315 (435)
T ss_pred -------HHH--HHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC------
T ss_conf -------862--46899999999852365279984101022672035788872799999999998603778888------
Q ss_pred CEEEEEECCC
Q ss_conf 4299994242
Q gi|254780163|r 617 NVILIMTTNA 626 (798)
Q Consensus 617 n~iii~TsN~ 626 (798)
|.-++|.+|-
T Consensus 316 NIKVlmATNR 325 (435)
T KOG0729 316 NIKVLMATNR 325 (435)
T ss_pred CEEEEEECCC
T ss_conf 7589863489
No 282
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=98.08 E-value=9.1e-06 Score=60.58 Aligned_cols=94 Identities=26% Similarity=0.415 Sum_probs=65.0
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHH--------CC--CCCCCHHHHHHHHHHHHHC
Q ss_conf 7787489667641166899999999854898834520144554046753--------06--3431237899999998720
Q gi|254780163|r 224 SKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLI--------AG--TRYRGDFEERIKKIVKEIE 293 (798)
Q Consensus 224 ~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~--------ag--~~~rg~fe~r~~~~~~~~~ 293 (798)
-..|-+++|++|||||.++..||..+-.++. .+..+|++.+. -| ..|.|-=|.. .+.+.++
T Consensus 2 p~~~~l~~GPsGvGKT~lAk~la~~l~~~~~-------~~i~~dm~e~~~~~~v~~l~g~~~gyvg~~~~G--~l~~~v~ 72 (168)
T pfam07724 2 PIGSFLFLGPTGVGKTELAKALAELLFGDER-------ALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGG--QLTEAVR 72 (168)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCCC-------CEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCC--CHHHHHH
T ss_conf 8379998898998999999999999679853-------448855756542569998705899872624265--0789998
Q ss_pred CCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEE
Q ss_conf 389839997361663015544434477788887663026603
Q gi|254780163|r 294 SYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVR 335 (798)
Q Consensus 294 ~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~ 335 (798)
++++-|+|||||+-. .-++-|.|.+.|..|.++
T Consensus 73 ~~p~~VillDEIeKa---------~~~V~~~LL~ild~g~~~ 105 (168)
T pfam07724 73 RKPYSIVLIDEIEKA---------HPGVQNDLLQILEGGTLT 105 (168)
T ss_pred HCCCCEEEEHHHHHH---------CHHHHHHHHHHCCCCCEE
T ss_conf 389848986577665---------899999999870587063
No 283
>PRK09183 transposase/IS protein; Provisional
Probab=98.08 E-value=2.9e-05 Score=57.03 Aligned_cols=112 Identities=23% Similarity=0.348 Sum_probs=66.5
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHC---CCCCCCHHHHHHHHHHHHHCCCCCEE
Q ss_conf 677874896676411668999999998548988345201445540467530---63431237899999998720389839
Q gi|254780163|r 223 RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIA---GTRYRGDFEERIKKIVKEIESYANAI 299 (798)
Q Consensus 223 R~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a---g~~~rg~fe~r~~~~~~~~~~~~~~i 299 (798)
.++-|+||+|+||||||-++-+|+...+. +|++++-..+..|+. -+...|.+...++..+. . .-+
T Consensus 99 ~~~~Nvil~G~~GtGKThLA~Alg~~A~~-------~G~~v~f~~~~~L~~~L~~a~~~~~~~~~l~r~l~----~-~dL 166 (258)
T PRK09183 99 ERNENIVLLGPSGVGKTHLAIALGYEAVR-------AGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVM----A-PRL 166 (258)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHHHHHH-------CCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHC----C-CCE
T ss_conf 55886799899998689999999999998-------79939997899999999999876859999998743----4-651
Q ss_pred EEECCHHHHHCCCCCCCCCCCHHHHHHHHHC-CCCE-EEEEEC--CHHHHHHHHHCCH
Q ss_conf 9973616630155444344777888876630-2660-388730--4899999852011
Q gi|254780163|r 300 LYIDEIHTLVGAGSASGISVDASNLLKPALS-SGAV-RCIGST--TYSEYRQFFEKDK 353 (798)
Q Consensus 300 lfideih~ligag~~~g~~~d~an~lkP~L~-rg~~-~~Igat--T~~ey~~~~e~d~ 353 (798)
|.|||+-.. .- +-..+++|--.++ |=+- .+|-+| .+++|...|-.|+
T Consensus 167 LIiDdlG~~------~~-~~~~~~~lfeli~~Rye~~S~IiTSn~~~~~W~~~f~~D~ 217 (258)
T PRK09183 167 LIIDEIGYL------PF-SQEEANLFFQVIAKRYEKGAMILTSNLPFGQWDQTFAGDA 217 (258)
T ss_pred EEEHHHHCC------CC-CHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCCH
T ss_conf 443133154------68-8889999999999985767789988999789856516869
No 284
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.07 E-value=6.2e-05 Score=54.62 Aligned_cols=126 Identities=22% Similarity=0.274 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC---CCCEEEEEHHHHHCCCCCCHHCCCCCHH
Q ss_conf 8999999999877520445657874068861432003889999987304---7733772068861246530110478000
Q gi|254780163|r 483 EEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL---GVQLLRFDMSEYMERHAVSRLIGAPPGY 559 (798)
Q Consensus 483 ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~---~~~lir~dmsey~e~~~vs~LiGappGY 559 (798)
-.|+.++.+-+.... ++...--+++.||.|||||.|+.++|-.+ +.+.+-+.|++|...-.- -++.
T Consensus 138 ~~a~~~a~~F~~~y~-----~~~~~kGlyl~G~~G~GKTyL~~aian~La~~g~~v~~v~~p~~~~~lK~--s~~d---- 206 (306)
T PRK08939 138 LDALMAALDFLEAYK-----PGEKVKGLYLYGDFGVGKTYLLAAIANELAKKGVSSTLVHFPEFIRELKN--AISD---- 206 (306)
T ss_pred HHHHHHHHHHHHHHC-----CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHH--HHCC----
T ss_conf 999999999999737-----69888778898999998999999999999986992999875999999999--8648----
Q ss_pred CCCCCCCCCCHHHHHCCCEEEEECCH--HHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHH
Q ss_conf 25644431003555158517774044--550289999999987775021779977612542999942421455330
Q gi|254780163|r 560 VGFGQGGILADSVDQNPYSVVLLDEI--EKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSK 633 (798)
Q Consensus 560 vG~~egg~Lte~vr~~P~sVvl~DEi--EKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~ 633 (798)
+.-..+.+++++-| |++||+| |...+=+-+=+|++.=+.|+.... -.|+|||..-+++..
T Consensus 207 ---~s~~~~i~~~k~~~--vLiLDDiGaE~~t~W~rd~vl~~IL~~Rm~~~l---------PTffTSN~~~~eLe~ 268 (306)
T PRK08939 207 ---GSVKEKIDAVKEAP--VLMLDDIGAEQMSSWVRDEVLGVILQYRMQEEL---------PTFFTSNFDFDELEH 268 (306)
T ss_pred ---CCHHHHHHHHHCCC--EEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCC---------CEEEECCCCHHHHHH
T ss_conf ---98899999984499--899844465426777899899999999997499---------979977999999999
No 285
>KOG0743 consensus
Probab=98.07 E-value=7.3e-05 Score=54.12 Aligned_cols=219 Identities=19% Similarity=0.246 Sum_probs=120.0
Q ss_pred CCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCHHHHHHHHHHH-HHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH
Q ss_conf 024531011100112334210000246653458999999999-8775204456578740688614320038899999873
Q gi|254780163|r 451 MNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSS-IKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAF 529 (798)
Q Consensus 451 ~~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~v~~~-i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~ 529 (798)
.|.-+|...-..-+. +.|+..++++|+.-=+ ..++. -.-.+.|-. =| --+||-||+|+|||-+--|+|-
T Consensus 188 ~W~~v~f~HpstF~T---laMd~~~K~~I~~Dl~---~F~k~k~~YkrvGka--wK--RGYLLYGPPGTGKSS~IaAmAn 257 (457)
T KOG0743 188 EWRSVGFPHPSTFET---LAMDPDLKERIIDDLD---DFIKGKDFYKRVGKA--WK--RGYLLYGPPGTGKSSFIAAMAN 257 (457)
T ss_pred CCEECCCCCCCCCCC---CCCCHHHHHHHHHHHH---HHHHCCHHHHHCCCC--CC--CCCEEECCCCCCHHHHHHHHHH
T ss_conf 612568999987442---0148667899999999---997223578864845--00--0412047999988899999972
Q ss_pred HCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCC----------HHH-------
Q ss_conf 047733772068861246530110478000256444310035551585177740445502----------899-------
Q gi|254780163|r 530 ALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSH----------PDV------- 592 (798)
Q Consensus 530 ~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh----------~~v------- 592 (798)
.++-...-++.++-..-...-+|+= ...+-||||+..|+-+- ++-
T Consensus 258 ~L~ydIydLeLt~v~~n~dLr~LL~------------------~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~V 319 (457)
T KOG0743 258 YLNYDIYDLELTEVKLDSDLRHLLL------------------ATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRV 319 (457)
T ss_pred HCCCCEEEEEECCCCCCHHHHHHHH------------------HCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 0587367744002368389999997------------------2899718999612432304434555664546776606
Q ss_pred -HHHHHHHHHHHHCCCCCCCEECC-CCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHH--CCCCEEEE
Q ss_conf -99999987775021779977612-542999942421455330368988211148899999872887881--77682896
Q gi|254780163|r 593 -LNILLQIMDYGILTDQSGKKISF-RNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFL--NRLDSIIP 668 (798)
Q Consensus 593 -~~~llqild~G~ltd~~Gr~vdf-~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~pefl--nRid~ii~ 668 (798)
+.=||.-+| |---+| ..-|||||+|- . ..+-|.++ +|+|.-|.
T Consensus 320 TlSGLLNfiD--------GlwSscg~ERIivFTTNh-------------~------------EkLDPALlRpGRmDmhI~ 366 (457)
T KOG0743 320 TLSGLLNFLD--------GLWSSCGDERIIVFTTNH-------------K------------EKLDPALLRPGRMDMHIY 366 (457)
T ss_pred EHHHHHHHHC--------CCCCCCCCCEEEEEECCC-------------H------------HHCCHHHCCCCCCEEEEE
T ss_conf 6477566413--------430048873499994687-------------1------------006886628875225667
Q ss_pred CCCCCHHHHHHHHHHHHHH-----HHHHHHHCCCEEEECHH-HHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 2889999999999999999-----99999866988999889-99999971898101532679999986
Q gi|254780163|r 669 FFPLSSDIIRQVVHKFIMK-----LELQLQEKGISFHFSEE-VINWLVSHGYDVKMGARPLERIIKEH 730 (798)
Q Consensus 669 F~~l~~~~~~~i~~~~l~~-----l~~~l~~~~i~l~~~~~-~~~~l~~~~~~~~~GAR~l~r~i~~~ 730 (798)
+.--+.+.+..++.++|.- |...+.+.--..+++|+ +-+.|...--|+.--.+.|.+.+++.
T Consensus 367 mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~~ 434 (457)
T KOG0743 367 MGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGLVEALESK 434 (457)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 26698799999999833898873067999987633746899999998635653889999999998763
No 286
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.06 E-value=0.001 Score=45.84 Aligned_cols=159 Identities=24% Similarity=0.344 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 78999999998622677874896676411668999999998548988345201445540467530634312378999999
Q gi|254780163|r 209 RHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKI 288 (798)
Q Consensus 209 Rd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~ 288 (798)
|+.=++.+-+-+.-.--||++|.|--|.||+++|-.+-...... +.|+++++-.-|.+ |-.+
T Consensus 69 k~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~-------glrLVEV~k~dl~~-----------Lp~l 130 (287)
T COG2607 69 KEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE-------GLRLVEVDKEDLAT-----------LPDL 130 (287)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHC-------CCEEEEECHHHHHH-----------HHHH
T ss_conf 99999989999728865236776377777479999999998741-------77079976888865-----------7999
Q ss_pred HHHHCCCC-CEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCC-----EEEEEECCH-----HHHHH----------
Q ss_conf 98720389-8399973616630155444344777888876630266-----038873048-----99999----------
Q gi|254780163|r 289 VKEIESYA-NAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGA-----VRCIGSTTY-----SEYRQ---------- 347 (798)
Q Consensus 289 ~~~~~~~~-~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~-----~~~IgatT~-----~ey~~---------- 347 (798)
++.++..+ ..|||+|++ +=+. .-++--.||++|.-|- =-++-||.. .||..
T Consensus 131 ~~~Lr~~~~kFIlFcDDL-------SFe~-gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih 202 (287)
T COG2607 131 VELLRARPEKFILFCDDL-------SFEE-GDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIH 202 (287)
T ss_pred HHHHHCCCCEEEEEECCC-------CCCC-CCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHHHHCCCCCCCCC
T ss_conf 999961886089995677-------7777-81389999998538855688707999715875336276642778402358
Q ss_pred ---HHHCCHHHHHHCEE-EEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHH
Q ss_conf ---85201114320014-430687868999999861276654103512111789
Q gi|254780163|r 348 ---FFEKDKALVRRFQK-IDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIR 397 (798)
Q Consensus 348 ---~~e~d~al~rrF~~-i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~ 397 (798)
.+|---.|..||-- +.-..++.++-+.|.++ |-+|+++.++++.+.
T Consensus 203 ~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~----~a~~~~l~~~~e~l~ 252 (287)
T COG2607 203 PSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDH----YAKHFGLDISDEELH 252 (287)
T ss_pred HHHHHHHHHCHHHHCCEEECCCCCCHHHHHHHHHH----HHHHCCCCCCHHHHH
T ss_conf 06778776254642340450368788999999999----999859998878999
No 287
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=98.05 E-value=0.00035 Score=49.19 Aligned_cols=207 Identities=20% Similarity=0.339 Sum_probs=119.5
Q ss_pred HHCHHHHHHHHHHH-------HHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH-HC------CCCEE---EEEHH
Q ss_conf 53458999999999-------8775204456578740688614320038899999873-04------77337---72068
Q gi|254780163|r 479 VYGQEEAIKKLSSS-------IKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAF-AL------GVQLL---RFDMS 541 (798)
Q Consensus 479 v~GQ~~ai~~v~~~-------i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~-~~------~~~li---r~dms 541 (798)
.||=++.-..|-+- -+|...||+....-+ -++|-|.+|+|||-.|+.||. .- ..++| |-|
T Consensus 8 ~vGL~~vK~~i~EiYA~i~i~~kR~~~GLk~~~~~L-HMiFKGNPGTGKTTVAR~~gklf~emnvL~KGH~iE~ERAD-- 84 (261)
T TIGR02881 8 LVGLDEVKELIKEIYAWIQINEKRKEEGLKTSKQVL-HMIFKGNPGTGKTTVARLLGKLFKEMNVLSKGHLIEVERAD-- 84 (261)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE-EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECC--
T ss_conf 048889999999999999998888751011488447-87742786684389999999998533756788678876222--
Q ss_pred HHHCCCCCCHHCCCCCHHCCCCCCCCCC-HHHHHCCCEEEEECCH-------HHC-CHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 8612465301104780002564443100-3555158517774044-------550-289999999987775021779977
Q gi|254780163|r 542 EYMERHAVSRLIGAPPGYVGFGQGGILA-DSVDQNPYSVVLLDEI-------EKS-HPDVLNILLQIMDYGILTDQSGKK 612 (798)
Q Consensus 542 ey~e~~~vs~LiGappGYvG~~egg~Lt-e~vr~~P~sVvl~DEi-------EKA-h~~v~~~llqild~G~ltd~~Gr~ 612 (798)
|+|= |+||-. +=| |.|+|.-=.|++.||- ||= -.+=.|.|-.-++|- +
T Consensus 85 ----------LVGE---YIGHTA--qkTRe~~kkA~GGvLFiDEAYSLaRGGEKDFGKEAIDtLVK~mEd~-----~--- 141 (261)
T TIGR02881 85 ----------LVGE---YIGHTA--QKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKAMEDQ-----R--- 141 (261)
T ss_pred ----------CCCC---CCCCHH--HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC-----C---
T ss_conf ----------1223---203004--8999999986388005577777614888876620888999987615-----6---
Q ss_pred ECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 61254299994242145533036898821114889999987288788177682896288999999999999999999999
Q gi|254780163|r 613 ISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQL 692 (798)
Q Consensus 613 vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l 692 (798)
.+-|+|+- |+. ..|+-. =.+-|-+-+|+.=.+-|-..+.+++..|+..++++-.-+|
T Consensus 142 ---~~lvlILA-------------GY~------~EM~yF-L~~NPGL~SRFPi~i~FPdY~~eeL~~Ia~~m~~~ReY~L 198 (261)
T TIGR02881 142 ---NELVLILA-------------GYS------DEMDYF-LSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKL 198 (261)
T ss_pred ---CCEEEEEE-------------CCH------HHHHHH-HHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf ---98689970-------------876------899998-6207797776650541889988899999999986464225
Q ss_pred HHCCCEEEECHHHHHHHHHCCC--C-CCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8669889998899999997189--8-101532679999986235999999
Q gi|254780163|r 693 QEKGISFHFSEEVINWLVSHGY--D-VKMGARPLERIIKEHVKVPLADEI 739 (798)
Q Consensus 693 ~~~~i~l~~~~~~~~~l~~~~~--~-~~~GAR~l~r~i~~~i~~~la~~i 739 (798)
+=+....++++|.+... . .-.-||-+|.+|++-|-..=-+.+
T Consensus 199 -----t~~A~~~lr~~l~~~~~~~~~~~sNaR~vRN~iE~AIR~QAvRlL 243 (261)
T TIGR02881 199 -----TEEAKWKLREHLAKVDQLSSREFSNARYVRNIIEKAIRRQAVRLL 243 (261)
T ss_pred -----CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf -----788999999997412444210057620124288999999998764
No 288
>KOG0652 consensus
Probab=98.01 E-value=8.8e-05 Score=53.51 Aligned_cols=156 Identities=26% Similarity=0.351 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHH--HH-----------CCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHH
Q ss_conf 22178999999998--62-----------267787489667641166899999999854898834520144554046753
Q gi|254780163|r 206 LVGRHEEINRTIQI--LC-----------RRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLI 272 (798)
Q Consensus 206 VIGRd~EI~riiqI--L~-----------RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ 272 (798)
+=|-|+.|+.+++- |. =|--..+++-|+||.|||-++...|-.-... --.|.+-.++.
T Consensus 173 iGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aT--FLKLAgPQLVQ------- 243 (424)
T KOG0652 173 IGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNAT--FLKLAGPQLVQ------- 243 (424)
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCH--HHHHCCHHHHH-------
T ss_conf 325789999999886145656878874688899722765799975779999998740106--88732647776-------
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCC-CCCC---------CCHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 063431237899999998720389839997361663015544-4344---------777888876630266038873048
Q gi|254780163|r 273 AGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSA-SGIS---------VDASNLLKPALSSGAVRCIGSTTY 342 (798)
Q Consensus 273 ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~-~g~~---------~d~an~lkP~L~rg~~~~IgatT~ 342 (798)
.|-|+--.-++.-+.-++...+.|+||||+..| |+-.. +.-+ +..-|-|-..-+..++++|+||.-
T Consensus 244 ---MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAI-GtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNR 319 (424)
T KOG0652 244 ---MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAI-GTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNR 319 (424)
T ss_pred ---HHHCCHHHHHHHHHHHHHCCCCEEEEEECHHHH-CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC
T ss_conf ---653341889999998753349838997300232-3343653123438999999999986048997562678852164
Q ss_pred HHHHHHHHCCHHHHH--HC-EEEEECCCCHHHHHHHHHHH
Q ss_conf 999998520111432--00-14430687868999999861
Q gi|254780163|r 343 SEYRQFFEKDKALVR--RF-QKIDVSEPSIEDAIEIVKGI 379 (798)
Q Consensus 343 ~ey~~~~e~d~al~r--rF-~~i~v~ep~~~~~~~iL~~~ 379 (798)
-. --||||-| |. .+|..+-|+.+.-.+||+--
T Consensus 320 vD-----iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIH 354 (424)
T KOG0652 320 VD-----ILDPALLRSGRLDRKIEFPHPNEEARARILQIH 354 (424)
T ss_pred CC-----CCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 34-----348888644664444348899778988999886
No 289
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.01 E-value=0.00014 Score=51.97 Aligned_cols=107 Identities=15% Similarity=0.166 Sum_probs=65.9
Q ss_pred EEEEECCHHHCCHHHHHHHHHHHHHHHCC-CCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHH-HHC
Q ss_conf 17774044550289999999987775021-7799776125429999424214553303689882111488999998-728
Q gi|254780163|r 578 SVVLLDEIEKSHPDVLNILLQIMDYGILT-DQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALR-NFL 655 (798)
Q Consensus 578 sVvl~DEiEKAh~~v~~~llqild~G~lt-d~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~-~~f 655 (798)
.++=|-|+=|++.+.+.-||.+-++|... |...-.++|. .+||-+||-- ...+.+ ...
T Consensus 238 Gi~ef~E~~K~~~~~L~~LL~~tqE~~vk~~~~~~~~~~d-~viia~sNe~-------------------E~~~f~~~~~ 297 (361)
T smart00763 238 GILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPID-GLIIAHSNES-------------------EWQRFKSNKK 297 (361)
T ss_pred CCEEHHHHHHCCHHHHHHHHCCCCCCEECCCCCCCCCCCC-EEEEECCCHH-------------------HHHHHHCCCC
T ss_conf 6000487751759999998420103604178865653245-1588249859-------------------9987644841
Q ss_pred CHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHH
Q ss_conf 8788177682896288999999999999999999999866988999889999999
Q gi|254780163|r 656 SPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLV 710 (798)
Q Consensus 656 ~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~ 710 (798)
-+.|+.|+..|=+=.-|.-.+=.+|.++.+..- .-....+.|.+++..+
T Consensus 298 ~ea~~dR~~~i~vPY~l~~~~E~kIY~k~l~~~------~~~~~h~aPhtl~~aa 346 (361)
T smart00763 298 NEALLDRIIKVKVPYCLRVSEEAQIYEKLLRNS------DLTEAHIAPHTLEMAA 346 (361)
T ss_pred CHHHHCCEEEEECCCCCCHHHHHHHHHHHHCCC------CCCCCCCCCCHHHHHH
T ss_conf 055550279986874167388999999995656------5668772986899999
No 290
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.00 E-value=3.7e-05 Score=56.19 Aligned_cols=124 Identities=12% Similarity=0.260 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC-CC--CEEEEEHHHHHCCCCCCHHCCCCCH
Q ss_conf 58999999999877520445657874068861432003889999987304-77--3377206886124653011047800
Q gi|254780163|r 482 QEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL-GV--QLLRFDMSEYMERHAVSRLIGAPPG 558 (798)
Q Consensus 482 Q~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~-~~--~lir~dmsey~e~~~vs~LiGappG 558 (798)
|.+|-+.+.++++..| ---.+||.||.|+||+.+|..+|..+ .. +--...++.-..+ .+..+ .|-|
T Consensus 2 ~~~~We~L~~~i~~~R--------l~HAyLf~Gp~G~GK~~~A~~~A~~LLc~~~p~~~~~i~~~~HP-D~~~i--~pe~ 70 (290)
T PRK05917 2 ENAAWEALLQRVRDQK--------VPSAILLHGQDLSNLSQYAYELASLILLESSPEAQYKISQKIHP-DIHEF--FPEG 70 (290)
T ss_pred CCHHHHHHHHHHHCCC--------CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCC-CEEEE--CCCC
T ss_conf 8549999999998399--------66068768999865999999999998578996168898746899-85996--1577
Q ss_pred --HC-CCCCCCCCCHHHHHCC----CEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCC
Q ss_conf --02-5644431003555158----517774044550289999999987775021779977612542999942421
Q gi|254780163|r 559 --YV-GFGQGGILADSVDQNP----YSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAG 627 (798)
Q Consensus 559 --Yv-G~~egg~Lte~vr~~P----~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G 627 (798)
.. +-++--.|.+.+...| |-|+++|+.|+...+-.|.||..|+|-- .+|++||+|+--
T Consensus 71 k~~~~~Id~iR~l~~~i~~~p~~g~~KV~IId~Ad~Mn~~AaNALLKtLEEPP-----------~~tvfILit~~~ 135 (290)
T PRK05917 71 KGRLHSIETPRAIKKQIWIHPYEANYKIYIIHEADRMTLDAISAFLKVLEDPP-----------KHSVIILTSAKP 135 (290)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCC-----------CCEEEEEEECCH
T ss_conf 78878678999999996418646882699975677638999999999734798-----------785999986992
No 291
>PHA02244 ATPase-like protein
Probab=98.00 E-value=2.7e-05 Score=57.15 Aligned_cols=189 Identities=24% Similarity=0.391 Sum_probs=107.6
Q ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEE--EHHHHHCCCCCCHHCCCCCHHCCCCCCCCC--CHHHHH-
Q ss_conf 456578740688614320038899999873047733772--068861246530110478000256444310--035551-
Q gi|254780163|r 500 LSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRF--DMSEYMERHAVSRLIGAPPGYVGFGQGGIL--ADSVDQ- 574 (798)
Q Consensus 500 l~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~--dmsey~e~~~vs~LiGappGYvG~~egg~L--te~vr~- 574 (798)
+-+.+-|+ || .||.|+|||..|+.+|..+.-.+--. =|+||. |. ||+ +..|.. |...|-
T Consensus 115 ~v~~nipV--~L-~G~AGsGKt~~A~qIA~aLdl~FYf~gAI~~ef~-------L~----Gf~--DAnG~yh~T~f~kaF 178 (383)
T PHA02244 115 IVNANIPV--FL-KGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFE-------LK----GFI--DANGKFHETPFYEAF 178 (383)
T ss_pred HHHCCCCE--EE-ECCCCCCHHHHHHHHHHHHCCCCEECHHHHHHHH-------CC----CEE--CCCCCEECCHHHHHH
T ss_conf 87359856--99-7588886348999999985888244132301343-------01----256--489967263899998
Q ss_pred CCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 58517774044550289999999987775021779977612542999942421455330368988211148899999872
Q gi|254780163|r 575 NPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNF 654 (798)
Q Consensus 575 ~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~ 654 (798)
+--.|+|||||+.++|.++-.|=+.|-+|.+.=.-|+..--.++.+|-+-|. .|-+....- .-|+.
T Consensus 179 k~GGLfLlDEiDASnP~aL~~lNaALAN~fm~FPdG~V~~HedFr~IAagNT---------~G~Gad~~Y-----VGRnq 244 (383)
T PHA02244 179 KKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNT---------LGKGADHIY-----VARNK 244 (383)
T ss_pred HCCCEEEEEHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCEEEEEECCC---------CCCCCCCCC-----CCCCC
T ss_conf 6188799732004487999999899864763476421100576389972465---------677887221-----14454
Q ss_pred CCHHHHCCCCEEEECCCCCHHHHHHHH-------HHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 887881776828962889999999999-------999999999998669889998899999997189810153267
Q gi|254780163|r 655 LSPEFLNRLDSIIPFFPLSSDIIRQVV-------HKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPL 723 (798)
Q Consensus 655 f~peflnRid~ii~F~~l~~~~~~~i~-------~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l 723 (798)
.-+.-++|+ .-++|. .+ +.+...+ -.++..+..-.+++|+.-.++-.++-+ -+.++.-|||--+
T Consensus 245 LD~ATLDRF-v~ie~~-YD-EkiE~~~s~g~~dlv~fv~~~r~~~~~~~l~~v~s~rai~~--~~k~d~v~~~~f~ 315 (383)
T PHA02244 245 IDGATLDRF-APIEFD-YD-EKIEHLISNGDEDLVNFVALLRHEMAEKGLDHVFSMRAIIH--GKKFDGVFEADFL 315 (383)
T ss_pred CCHHHHHHE-EECCCC-CC-HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEHHHHHC--CCCCCCCCCHHHH
T ss_conf 564646203-644568-31-67888850685899999999999877408870454154533--4312442421377
No 292
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.00 E-value=0.00011 Score=52.95 Aligned_cols=171 Identities=18% Similarity=0.227 Sum_probs=97.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCC--CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHC----
Q ss_conf 486112221789999999986226--77874896676411668999999998548988345201445540467530----
Q gi|254780163|r 200 KGKVDILVGRHEEINRTIQILCRR--SKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIA---- 273 (798)
Q Consensus 200 eGKLDPVIGRd~EI~riiqIL~RR--~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a---- 273 (798)
...+|.+||+...++++++..-|= ...++++.||+|+||.-++..+-+.=. -++..++.+|-+++-.
T Consensus 200 ~~~F~~iig~S~~m~~v~~~a~r~A~~d~pVLI~GEsGTGKellAraIH~~S~-------R~~~pFv~vnC~alp~~l~e 272 (513)
T PRK10820 200 VSAFSQIVAVSPKMKHVVEQARKLAMLSAPLLITGDTGTGKDLFAYACHLASP-------RAKKPYLALNCASIPEDAVE 272 (513)
T ss_pred CCCHHHHEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCC-------CCCCCCEEEECCCCCHHHHH
T ss_conf 16877751089999999999999859899889989898249999999996688-------78998268889989967899
Q ss_pred ----CC---CCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCC-------------C
Q ss_conf ----63---431237899999998720389839997361663015544434477788887663026-------------6
Q gi|254780163|r 274 ----GT---RYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSG-------------A 333 (798)
Q Consensus 274 ----g~---~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg-------------~ 333 (798)
|. .-.|-|| .+.+=-||+|||+.+ +.+.-.-|--+|..| +
T Consensus 273 seLFG~a~~~~~G~fe-----------~A~gGTLfLdEI~~l---------~~~~Q~kLLr~Lq~~~~~rvG~~~~~~~d 332 (513)
T PRK10820 273 SELFGHAPEGKKGFFE-----------QANGGSVLLDEIGEM---------SPRMQAKLLRFLNDGTFRRVGEDHEVHVD 332 (513)
T ss_pred HHHCCCCCCCCCCCEE-----------ECCCCEEEEECHHHC---------CHHHHHHHHHHHHCCEEEECCCCCEEEEE
T ss_conf 9863876668897557-----------858988999783659---------99999999999868979965998535677
Q ss_pred EEEEEECCHHHHHHHHHCCH---HHHHHCEEEEECCCCHHHHH----HHHHHHHHHHHHHCC---CEECCHHHHH
Q ss_conf 03887304899999852011---14320014430687868999----999861276654103---5121117899
Q gi|254780163|r 334 VRCIGSTTYSEYRQFFEKDK---ALVRRFQKIDVSEPSIEDAI----EIVKGIKPYFEEHHQ---LRYSKEAIRA 398 (798)
Q Consensus 334 ~~~IgatT~~ey~~~~e~d~---al~rrF~~i~v~ep~~~~~~----~iL~~~~~~ye~~h~---v~~~~~al~~ 398 (798)
+|+|+||+.+= .+.++... .|--|+..+.+.=|.-.+-. .+.+....+|-..++ ..++++|+..
T Consensus 333 vRiIaaT~~dL-~~lv~~g~FReDLyyRL~v~~I~lPpLReR~eDI~~L~~~fl~~~~~~~g~~~~~ls~~a~~~ 406 (513)
T PRK10820 333 VRVICATQKNL-VELVQKGLFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLSADLSTV 406 (513)
T ss_pred EEEEECCCHHH-HHHHHCCCCCHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 89996265309-999872985088999861672558883446556999999999999997599989847999999
No 293
>pfam05673 DUF815 Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.
Probab=97.99 E-value=0.0011 Score=45.73 Aligned_cols=190 Identities=23% Similarity=0.411 Sum_probs=121.1
Q ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH--HH-CCCCEEEEEHHHHHCCCCCCHHC
Q ss_conf 6653458999999999877520445657874068861432003889999987--30-47733772068861246530110
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLA--FA-LGVQLLRFDMSEYMERHAVSRLI 553 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la--~~-~~~~lir~dmsey~e~~~vs~Li 553 (798)
.-.+|-|.-.+.+.+.....-.|+ |--..|+-|.-|+||+-|.|++- |. .+-+||-++-..-.+ |
T Consensus 28 ~~L~Gie~Qk~~l~~NT~~F~~G~-----pAnnvLLwG~RGtGKSSlVKall~~~~~~gLrlIEv~k~~L~~------L- 95 (248)
T pfam05673 28 DDLVGIDRQKEALLRNTEQFLAGL-----PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVDKDDLGD------L- 95 (248)
T ss_pred HHHCCHHHHHHHHHHHHHHHHCCC-----CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHCC------H-
T ss_conf 893493999999999999998089-----8613676768989888999999998631495699987888721------9-
Q ss_pred CCCCHHCCCCCCCCCCHHHHHCCCEEEEE-CCH--HHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHH
Q ss_conf 47800025644431003555158517774-044--550289999999987775021779977612542999942421455
Q gi|254780163|r 554 GAPPGYVGFGQGGILADSVDQNPYSVVLL-DEI--EKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALE 630 (798)
Q Consensus 554 GappGYvG~~egg~Lte~vr~~P~sVvl~-DEi--EKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~ 630 (798)
..|.+.++..|+-.|+| |.+ |.-. +=+..|--+|| |-+ ..-=.|++|..|||-=.
T Consensus 96 ------------p~i~~~l~~~~~kFIiF~DDLSFe~~d-~~yk~LKs~Le-G~l------~~~p~NvliYaTSNRRH-- 153 (248)
T pfam05673 96 ------------PDIVDLLRGRPYRFILFCDDLSFEEGE-SSYKALKSVLE-GGL------EARPDNVLIYATSNRRH-- 153 (248)
T ss_pred ------------HHHHHHHHCCCCCEEEEECCCCCCCCC-HHHHHHHHHHC-CCC------CCCCCEEEEEEECCCHH--
T ss_conf ------------999999964997579996355767897-36999999965-764------46887389998427000--
Q ss_pred HHHCCCCCCC----CCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE---CH
Q ss_conf 3303689882----1114889999987288788177682896288999999999999999999999866988999---88
Q gi|254780163|r 631 MSKARIGFGS----SRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHF---SE 703 (798)
Q Consensus 631 ~~~~~~g~~~----~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~---~~ 703 (798)
+....+.... -...+.+.+.+. +-.|+--.+.|.|.+.++...||...++. .|+.+.- ..
T Consensus 154 Li~e~~~d~~~~~ei~~~d~~eEklS------LsDRFGL~l~F~~~~q~~YL~IV~~~~~~-------~~~~~~~e~l~~ 220 (248)
T pfam05673 154 LIPEYMSDNEGDGEIHPGDAVEEKLS------LSDRFGLWLGFHPFDQDEYLAIVRGYAAR-------LGLPLDEEELRR 220 (248)
T ss_pred CCCHHHCCCCCCCCCCCCHHHHHHHH------HHHHCCEEEEECCCCHHHHHHHHHHHHHH-------CCCCCCHHHHHH
T ss_conf 36333234777443672557774534------89867717850799999999999999998-------299999899999
Q ss_pred HHHHHHHHCC
Q ss_conf 9999999718
Q gi|254780163|r 704 EVINWLVSHG 713 (798)
Q Consensus 704 ~~~~~l~~~~ 713 (798)
.|+.|-..+|
T Consensus 221 ~Al~wa~~rg 230 (248)
T pfam05673 221 EALQWALTRG 230 (248)
T ss_pred HHHHHHHHCC
T ss_conf 9999999838
No 294
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=97.99 E-value=0.00029 Score=49.84 Aligned_cols=171 Identities=26% Similarity=0.397 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHCCCCCC---------EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHH
Q ss_conf 99999999862267787---------489667641166899999999854898834520144554046753063431237
Q gi|254780163|r 211 EEINRTIQILCRRSKNN---------PLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDF 281 (798)
Q Consensus 211 ~EI~riiqIL~RR~KNn---------~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~f 281 (798)
.||--.|+|=.||.+.. =|.-|-||.|||+++--+|...-+=+| |.-=.+++..=+-||- =|=|.=
T Consensus 19 ~EiYA~i~i~~kR~~~GLk~~~~~LHMiFKGNPGTGKTTVAR~~gklf~emnv---L~KGH~iE~ERADLVG--EYIGHT 93 (261)
T TIGR02881 19 KEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARLLGKLFKEMNV---LSKGHLIEVERADLVG--EYIGHT 93 (261)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCC---CCCCCEEEEEECCCCC--CCCCCH
T ss_conf 99999999988887510114884478774278668438999999999853375---6788678876222122--320300
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCC----H-HHHHHHHH-CCCCEEEEEECCHHHHHHHHHCCHHH
Q ss_conf 899999998720389839997361663015544434477----7-88887663-02660388730489999985201114
Q gi|254780163|r 282 EERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVD----A-SNLLKPAL-SSGAVRCIGSTTYSEYRQFFEKDKAL 355 (798)
Q Consensus 282 e~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d----~-an~lkP~L-~rg~~~~IgatT~~ey~~~~e~d~al 355 (798)
-+|.+.+++.+ .|. ||||||...|- -||.=| | -.+-|-+= .+.++=+|=|==++|-.-+.+-+|.|
T Consensus 94 AqkTRe~~kkA--~GG-vLFiDEAYSLa-----RGGEKDFGKEAIDtLVK~mEd~~~~lvlILAGY~~EM~yFL~~NPGL 165 (261)
T TIGR02881 94 AQKTREVIKKA--LGG-VLFIDEAYSLA-----RGGEKDFGKEAIDTLVKAMEDQRNELVLILAGYSDEMDYFLSLNPGL 165 (261)
T ss_pred HHHHHHHHHHH--CCC-CHHHHHHHHHH-----CCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCC
T ss_conf 48999999986--388-00557777761-----48888766208889999876156986899708768999986207797
Q ss_pred HHHCEE-EEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHH
Q ss_conf 320014-4306878689999998612766541035121117899
Q gi|254780163|r 356 VRRFQK-IDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRA 398 (798)
Q Consensus 356 ~rrF~~-i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~ 398 (798)
..||-. |+=+.=+.++=+.|.....+..| -.+|.+|-..
T Consensus 166 ~SRFPi~i~FPdY~~eeL~~Ia~~m~~~Re----Y~Lt~~A~~~ 205 (261)
T TIGR02881 166 RSRFPISIDFPDYTVEELMEIAERMVKERE----YKLTEEAKWK 205 (261)
T ss_pred CCCCCCEEECCCCCHHHHHHHHHHHHHHHH----HCCCHHHHHH
T ss_conf 776650541889988899999999986464----2257889999
No 295
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.96 E-value=0.00014 Score=52.07 Aligned_cols=113 Identities=20% Similarity=0.367 Sum_probs=67.4
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHC---CCCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 77874896676411668999999998548988345201445540467530---634312378999999987203898399
Q gi|254780163|r 224 SKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIA---GTRYRGDFEERIKKIVKEIESYANAIL 300 (798)
Q Consensus 224 ~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a---g~~~rg~fe~r~~~~~~~~~~~~~~il 300 (798)
+.+|.+|.|+||||||-++-+++..++.. +.+++-+.+..|+. .+-..|..|+++...+..+ -+|
T Consensus 104 ~~~nl~l~G~~G~GKthLa~Ai~~~l~~~-------g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~-----dlL 171 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKA-------GISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKV-----DLL 171 (254)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHC-------CCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHC-----CEE
T ss_conf 58828998999987999999999999983-------984999885999999999874552689999887528-----989
Q ss_pred EECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 973616630155444344777888876630266038873048999998520
Q gi|254780163|r 301 YIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEK 351 (798)
Q Consensus 301 fideih~ligag~~~g~~~d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~ 351 (798)
+||||-... .+.-..-+.-+++--...+..+-+.--..++++..++--
T Consensus 172 IiDDlG~~~---~~~~~~~~~~q~I~~r~~~~~~~~tsN~~~~~~~~~~~~ 219 (254)
T COG1484 172 IIDDIGYEP---FSQEEADLLFQLISRRYESRSLIITSNLSFGEWDELFGD 219 (254)
T ss_pred EEECCCCCC---CCCHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHCCC
T ss_conf 982367766---881558799999999997305420205882788866067
No 296
>PRK12377 putative replication protein; Provisional
Probab=97.96 E-value=7.9e-05 Score=53.84 Aligned_cols=114 Identities=18% Similarity=0.384 Sum_probs=69.7
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHC---CCCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 77874896676411668999999998548988345201445540467530---634312378999999987203898399
Q gi|254780163|r 224 SKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIA---GTRYRGDFEERIKKIVKEIESYANAIL 300 (798)
Q Consensus 224 ~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a---g~~~rg~fe~r~~~~~~~~~~~~~~il 300 (798)
...|.|++|+||||||-++-+++...+. +++.++-..+..|+. .+.-.|..|++ +++.+.+. -+|
T Consensus 100 ~~~NlIf~G~pGtGKTHLA~AIg~~a~~-------~G~sVlF~t~~dLv~~L~~a~~~g~~~~k---~l~~l~~~--dLL 167 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLA-------KGRSVIVVTVPDVMSRLHESYDNGQSGEK---FLQELCKV--DLL 167 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH-------CCCEEEEEEHHHHHHHHHHHHHCCCCHHH---HHHHHHCC--CEE
T ss_conf 8860899899998788999999999998-------79969998899999999999984850999---99997338--989
Q ss_pred EECCHHHHHCCCCCCCCCCCHHHHHHHHHC-C-CCEEEEEECC---HHHHHHHHHCCHHHHH
Q ss_conf 973616630155444344777888876630-2-6603887304---8999998520111432
Q gi|254780163|r 301 YIDEIHTLVGAGSASGISVDASNLLKPALS-S-GAVRCIGSTT---YSEYRQFFEKDKALVR 357 (798)
Q Consensus 301 fideih~ligag~~~g~~~d~an~lkP~L~-r-g~~~~IgatT---~~ey~~~~e~d~al~r 357 (798)
.|||+- -... +-..+++|--.+. | .+.+-+..|| ++|+.+.| .|+.+.|
T Consensus 168 IIDElG------~~~~-s~~~~~llfqlI~~Ry~~~ks~IiTTNL~f~ew~~il-gdailDR 221 (248)
T PRK12377 168 VLDEIG------IQRE-TKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLL-GERVMDR 221 (248)
T ss_pred EEHHCC------CCCC-CHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHH-HHHHHHH
T ss_conf 860005------7889-8679999999999998557986897589977998887-5999999
No 297
>PRK06526 transposase; Provisional
Probab=97.94 E-value=6.4e-05 Score=54.49 Aligned_cols=101 Identities=24% Similarity=0.377 Sum_probs=69.8
Q ss_pred EEEEECCCCHHHHHHHHHHHH---HCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHH-CCCEEEEECC
Q ss_conf 688614320038899999873---047733772068861246530110478000256444310035551-5851777404
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLAF---ALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQ-NPYSVVLLDE 584 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la~---~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~-~P~sVvl~DE 584 (798)
..+|+||||||||.||.+|+. -.+.+..-+.|++..+.-..++-- |.+...+++ ..+.++++||
T Consensus 100 Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~L~~a~~~------------g~~~~~~~~l~~~dLLIiDe 167 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHA------------GRLQDELVKLGRIPLLIVDE 167 (254)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHC------------CCHHHHHHHHHCCCEEEEEC
T ss_conf 789989999868999999999999869967998779999999998855------------80999999851368776502
Q ss_pred HHH--CCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHH
Q ss_conf 455--028999999998777502177997761254299994242145533
Q gi|254780163|r 585 IEK--SHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMS 632 (798)
Q Consensus 585 iEK--Ah~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~ 632 (798)
+=- -.+.--++|+|++++=. ++. =+|+|||.+...-.
T Consensus 168 ~g~~~~~~~~a~~lf~li~~Ry-----e~~------S~IiTSn~~~~~W~ 206 (254)
T PRK06526 168 VGYIPFEAEAANLFFQLVSSRY-----ERA------SLIVTSNKPFGRWG 206 (254)
T ss_pred CCCCCCCHHHHHHHHHHHHHHH-----CCC------CEEEECCCCHHHHH
T ss_conf 1364478899999999999997-----458------86766589866888
No 298
>KOG0478 consensus
Probab=97.94 E-value=0.0011 Score=45.76 Aligned_cols=264 Identities=17% Similarity=0.178 Sum_probs=147.3
Q ss_pred CHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHH-CCCCCCCCC--CCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 11233421000024665345899999999987752-044565787--406886143200388999998730477337720
Q gi|254780163|r 463 DDDSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIAR-AGLSDPNKP--IGCYVFSGPTGVGKTEISKQLAFALGVQLLRFD 539 (798)
Q Consensus 463 ~~~~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~-~gl~~~~rP--~g~flf~GptGvGKTelak~la~~~~~~lir~d 539 (798)
...+...-|.+.+.-.|+|.|.....+.-.+.=.. ..+...+|- -=..|++|-+|+||+.+-+-.+...+....+--
T Consensus 415 krpdiy~lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSG 494 (804)
T KOG0478 415 KRPDIYELLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSG 494 (804)
T ss_pred CCCCHHHHHHHHHCHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECC
T ss_conf 28509999988506565344226666778875687632233444245522899469986789999999974775404058
Q ss_pred HHHHHCCCCCCHHCCCCCHHCCCC-CCCCCC---HHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECC
Q ss_conf 688612465301104780002564-443100---3555158517774044550289999999987775021779977612
Q gi|254780163|r 540 MSEYMERHAVSRLIGAPPGYVGFG-QGGILA---DSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISF 615 (798)
Q Consensus 540 msey~e~~~vs~LiGappGYvG~~-egg~Lt---e~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf 615 (798)
-..|...|. -||-.+ ++++|. -|+--.-..|-.+|||+|-.-.-.++|+++|+.- +++.
T Consensus 495 -----kGsSavGLT----ayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQ--------TvSI 557 (804)
T KOG0478 495 -----KGSSAVGLT----AYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQ--------TLSI 557 (804)
T ss_pred -----CCCCHHCCE----EEEEECCCCCEEEEECCCEEECCCCEEECHHHHHHHHHHHHHHHHHHHHH--------HHHH
T ss_conf -----763022003----56776576554665048489728965771123333277889999999876--------3117
Q ss_pred CCEEEEEECCCCHHHHHHCC-CCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEE-ECCCCCHHHHH----HHHHHH-----
Q ss_conf 54299994242145533036-89882111488999998728878817768289-62889999999----999999-----
Q gi|254780163|r 616 RNVILIMTTNAGALEMSKAR-IGFGSSRNDDADKEALRNFLSPEFLNRLDSII-PFFPLSSDIIR----QVVHKF----- 684 (798)
Q Consensus 616 ~n~iii~TsN~G~~~~~~~~-~g~~~~~~~~~~~~~l~~~f~peflnRid~ii-~F~~l~~~~~~----~i~~~~----- 684 (798)
-.+=||.|=|+-...++... .+-.. .....+.+- =..+|-+|.|+|-|+ +|.+-++..=+ .|+.+.
T Consensus 558 AKAGII~sLNAR~SVLAaANP~~sky-np~k~i~eN--I~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~ 634 (804)
T KOG0478 558 AKAGIIASLNARCSVLAAANPIRSKY-NPNKSIIEN--INLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGE 634 (804)
T ss_pred HHCCEEEECCCCCEEEEEECCCCCCC-CCCCCHHHC--CCCCHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 43022342166530344535432457-999762321--678805643233789984275326778999999984145552
Q ss_pred ----------HHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCC-C--CH---HHHHHHHHH--HHHHHHHHHHCCCCCC
Q ss_conf ----------9999999986698899988999999971898101-5--32---679999986--2359999996296768
Q gi|254780163|r 685 ----------IMKLELQLQEKGISFHFSEEVINWLVSHGYDVKM-G--AR---PLERIIKEH--VKVPLADEILFGKLKK 746 (798)
Q Consensus 685 ----------l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~-G--AR---~l~r~i~~~--i~~~la~~il~~~~~~ 746 (798)
+-+...+.+.+.+.-.+++++...+...+++..- | +. ...|.++.. +....+++.+...+..
T Consensus 635 ~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~itat~rQlesLiRlsEahak~r~s~~ve~ 714 (804)
T KOG0478 635 KQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAYVDMRKIGEGAGQITATPRQLESLIRLSEAHAKMRLSNRVEE 714 (804)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 10257786899999999974257865568999999998665665313456530148889999999998887640255544
No 299
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.94 E-value=0.00019 Score=51.10 Aligned_cols=140 Identities=17% Similarity=0.178 Sum_probs=76.0
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHCCC-CCHH-----------H-H--EEEEEEEEHHHHHCCCCCCCHH--------
Q ss_conf 78748966764116689999999985489-8834-----------5-2--0144554046753063431237--------
Q gi|254780163|r 225 KNNPLYVGDPGVGKTAIAEGFAKQIVDGM-VPDI-----------L-L--GARIFSLDMGNLIAGTRYRGDF-------- 281 (798)
Q Consensus 225 KNn~~lvG~~gvGktaive~la~~i~~~~-vp~~-----------l-~--~~~i~~ld~~~l~ag~~~rg~f-------- 281 (798)
=+--++.|+.|+||.+++..+|+.+.-.+ .++. + . .--++.+..-.+-++....++.
T Consensus 21 ~HA~Lf~Gp~G~Gk~~lA~~~A~~llC~~~~~~~~~Cg~C~sC~~~~~~~HPD~~~i~Pe~~~~~~~~~~~~~~~~~~~~ 100 (342)
T PRK06964 21 PHALLLHGQAGIGKLAFAQHLAQGLLCETPQPNGEPCGTCAACTWFAQGNHPDYRIVRPEALAAEAPGAADDAKAADADE 100 (342)
T ss_pred HEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCHHCCCCCCCCCHHHHHHHHH
T ss_conf 30576579998679999999999983899998889786777788886279997455340021022333210010111222
Q ss_pred -------------HHHHHHHHHHHCC----CCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCC--CCEEEEEECCH
Q ss_conf -------------8999999987203----8983999736166301554443447778888766302--66038873048
Q gi|254780163|r 282 -------------EERIKKIVKEIES----YANAILYIDEIHTLVGAGSASGISVDASNLLKPALSS--GAVRCIGSTTY 342 (798)
Q Consensus 282 -------------e~r~~~~~~~~~~----~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~r--g~~~~IgatT~ 342 (798)
=+.++.+.+.+.. .+.-|..||+.|.+ +..+||-|--.|.- +..-+|=.|+.
T Consensus 101 ~~~~~~~~~~~I~idqiR~l~~~l~~~~~~g~~kVviI~~Ae~m---------n~~aaNalLK~LEEPp~~~~~iL~~~~ 171 (342)
T PRK06964 101 GGKKTRAPSKEIKIEQVRALLDFCGVGSHRGGARVVVLYPAEAL---------NVAAANALLKTLEEPPPGVVFLLVSAR 171 (342)
T ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHH---------CHHHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf 10123565564549999999999700754588449998277873---------899999999972379878489998699
Q ss_pred HHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHH
Q ss_conf 999998520111432001443068786899999986
Q gi|254780163|r 343 SEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKG 378 (798)
Q Consensus 343 ~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~ 378 (798)
. .+. =+.+-.|-|.|.+..|+.+++...|..
T Consensus 172 ~--~~l---lpTI~SRcq~~~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 172 I--DRL---LPTILSRCRQWPMTVPAPEAAAAWLAA 202 (342)
T ss_pred H--HHC---CHHHHHCCEEECCCCCCHHHHHHHHHH
T ss_conf 2--548---368876764302899599999999987
No 300
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=97.94 E-value=0.00014 Score=52.15 Aligned_cols=44 Identities=34% Similarity=0.564 Sum_probs=30.0
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCH-HHHEEEEEEEEHHHH
Q ss_conf 748966764116689999999985489883-452014455404675
Q gi|254780163|r 227 NPLYVGDPGVGKTAIAEGFAKQIVDGMVPD-ILLGARIFSLDMGNL 271 (798)
Q Consensus 227 n~~lvG~~gvGktaive~la~~i~~~~vp~-~l~~~~i~~ld~~~l 271 (798)
-.+|.|+||.|||||+-|+|+-+-. +||- .+.+..|||+.+..-
T Consensus 52 aiLlaGppGTGKTAlA~aiakeLG~-~vPF~~i~gSEvyS~E~kKT 96 (395)
T pfam06068 52 AVLIAGPPGTGKTALAIAISKELGE-DTPFCPISGSEVYSLEMKKT 96 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC-CCCEEEEEHHEEECCCCCHH
T ss_conf 8998779998889999999997487-99734500111212565488
No 301
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=97.93 E-value=1.4e-05 Score=59.32 Aligned_cols=127 Identities=20% Similarity=0.364 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHC--CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHH--------HCCC
Q ss_conf 22178999999998622--6778748966764116689999999985489883452014455404675--------3063
Q gi|254780163|r 206 LVGRHEEINRTIQILCR--RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNL--------IAGT 275 (798)
Q Consensus 206 VIGRd~EI~riiqIL~R--R~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l--------~ag~ 275 (798)
+||....++++.+-+.| +...++++.||+|+||+.+++.+-..=.. ++..++.+|.+.+ +=|.
T Consensus 1 lIG~S~~m~~l~~~i~~~a~~~~pVLI~GE~GtGK~~lAr~IH~~S~r-------~~~pfi~vnc~~~~~~~le~~LFG~ 73 (168)
T pfam00158 1 LIGESPAMQEVLELAKRVAPTDATVLITGESGTGKELFARAIHQLSPR-------ADGPFVAVNCAAIPEELLESELFGH 73 (168)
T ss_pred CEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCC-------CCCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf 973899999999999999588998899899988889999999985243-------5688312567899877999987587
Q ss_pred CCCCHHH---HHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCC-------------CEEEEEE
Q ss_conf 4312378---99999998720389839997361663015544434477788887663026-------------6038873
Q gi|254780163|r 276 RYRGDFE---ERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSG-------------AVRCIGS 339 (798)
Q Consensus 276 ~~rg~fe---~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg-------------~~~~Iga 339 (798)
.+|.|. ..-..+ +..+.+=.||+|||+.+ +.++-.-|--+|..| ++|+|.+
T Consensus 74 -~~g~f~ga~~~~~G~---le~A~gGTL~LdeI~~L---------~~~~Q~~Ll~~L~~~~~~~~g~~~~~~~~vRiIas 140 (168)
T pfam00158 74 -EKGAFTGAVSDRKGL---FELADGGTLFLDEIGEL---------PLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAA 140 (168)
T ss_pred -CCCCCCCCCCCCCCC---EEECCCCEEECCCHHHC---------CHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEEE
T ss_conf -667668987578996---42269987880244139---------99999999999857969977998458885499996
Q ss_pred CCHHHHHHHHHCCH
Q ss_conf 04899999852011
Q gi|254780163|r 340 TTYSEYRQFFEKDK 353 (798)
Q Consensus 340 tT~~ey~~~~e~d~ 353 (798)
|+.+= .+.+++..
T Consensus 141 t~~~L-~~~v~~G~ 153 (168)
T pfam00158 141 TNRDL-EEAVAEGR 153 (168)
T ss_pred CCCCH-HHHHHCCC
T ss_conf 59889-99988399
No 302
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.92 E-value=0.00029 Score=49.77 Aligned_cols=176 Identities=20% Similarity=0.256 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHHHHHHHCC--CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCC---C-
Q ss_conf 112221789999999986226--7787489667641166899999999854898834520144554046753063---4-
Q gi|254780163|r 203 VDILVGRHEEINRTIQILCRR--SKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGT---R- 276 (798)
Q Consensus 203 LDPVIGRd~EI~riiqIL~RR--~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~---~- 276 (798)
.+-+||-+...+++.+-+.+= .--++++.||+|+||+-++.-+. .+.... .+.-+++++-+.+-..- .
T Consensus 77 ~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH-~~s~r~-----~~~PFI~~NCa~~~en~~~~eL 150 (403)
T COG1221 77 LDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIH-ALSARR-----AEAPFIAFNCAAYSENLQEAEL 150 (403)
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH-HHHHCC-----CCCCEEEEEHHHHCCCHHHHHH
T ss_conf 6666356888999999998618999847986688753889999999-861213-----5898799777773767777777
Q ss_pred ---CCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCC-------------EEEEEEC
Q ss_conf ---312378999999987203898399973616630155444344777888876630266-------------0388730
Q gi|254780163|r 277 ---YRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGA-------------VRCIGST 340 (798)
Q Consensus 277 ---~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~-------------~~~Igat 340 (798)
-+|-|-.+..+--.-.+....=+||.||||++-- ++ --.|--+|..|+ +|+|+||
T Consensus 151 FG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~----~~-----Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT 221 (403)
T COG1221 151 FGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPP----EG-----QEKLLRVLEEGEYRRVGGSQPRPVDVRLICAT 221 (403)
T ss_pred HCCCCCEEECCCCCCCCHHEECCCCEEEHHHHHHCCH----HH-----HHHHHHHHHCCCEEECCCCCCCCCCCEEEECC
T ss_conf 3200000025667867642052797776563653798----58-----99999998718657668888867774045135
Q ss_pred CHHHHHHHHHCCHHHHHHCEEEEECCCCHHHH----HHHHHHHHHHHHHHCCCEECCH
Q ss_conf 48999998520111432001443068786899----9999861276654103512111
Q gi|254780163|r 341 TYSEYRQFFEKDKALVRRFQKIDVSEPSIEDA----IEIVKGIKPYFEEHHQLRYSKE 394 (798)
Q Consensus 341 T~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~----~~iL~~~~~~ye~~h~v~~~~~ 394 (798)
|-+==++.+.. +-|.||--++.|.=|+..+- ..++...-..|-.-++..+...
T Consensus 222 ~~~l~~~~~~g-~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~ 278 (403)
T COG1221 222 TEDLEEAVLAG-ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVD 278 (403)
T ss_pred CCCHHHHHHHH-CCHHHHHCCCEECCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 66879998740-5255641675431897243555599999999999999739998888
No 303
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114 This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception.
Probab=97.92 E-value=0.00066 Score=47.21 Aligned_cols=233 Identities=20% Similarity=0.301 Sum_probs=159.2
Q ss_pred CHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC---CCCEEEEEHH----HHHC
Q ss_conf 00246653458999999999877520445657874068861432003889999987304---7733772068----8612
Q gi|254780163|r 473 KNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL---GVQLLRFDMS----EYME 545 (798)
Q Consensus 473 ~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~---~~~lir~dms----ey~e 545 (798)
..=...+||...|...|-++|-|. . ..++ +.|..|-||+||=-.|++|-..+ ..+||-+||. |..|
T Consensus 131 ~~~~~~liG~aPAMQevfR~igRL----~--~~~l-~VlI~GESGTGKELVA~ALH~~s~R~~~PFiAlNmAAIP~~L~E 203 (471)
T TIGR01818 131 AEDSAELIGEAPAMQEVFRAIGRL----S--RSDL-SVLINGESGTGKELVARALHRHSPRARGPFIALNMAAIPKDLIE 203 (471)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHH----C--CCCC-EEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECHHHCCHHHHH
T ss_conf 125621236885168999999975----1--6960-58885575775899999840137555777327302322246655
Q ss_pred CCCCCHHCCCCCHHCCCCCCCCCCHHHHHCC-------CEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCE
Q ss_conf 4653011047800025644431003555158-------517774044550289999999987775021779977612542
Q gi|254780163|r 546 RHAVSRLIGAPPGYVGFGQGGILADSVDQNP-------YSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNV 618 (798)
Q Consensus 546 ~~~vs~LiGappGYvG~~egg~Lte~vr~~P-------~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~ 618 (798)
|-|.| ||. |-.|-|..++- =.-++||||=-.--+++.=||-||.+|..+-=-|++.==.++
T Consensus 204 ----SELFG-------HEk-GAFTGA~~~~~GRFEQA~GGTLFLDEIGDMPl~~QTRLLRVL~~G~f~rVGG~~p~k~DV 271 (471)
T TIGR01818 204 ----SELFG-------HEK-GAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDLQTRLLRVLADGEFYRVGGRTPIKVDV 271 (471)
T ss_pred ----HHHCC-------CCC-CCCCCCCCCCCCCEEECCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEECCCEEEEEEE
T ss_conf ----43214-------565-300010255677725348882101021678776877798864078657726820245504
Q ss_pred EEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHH-HHCCHHHHCCCCEEE-ECCCC--CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999424214553303689882111488999998-728878817768289-62889--9999999999999999999986
Q gi|254780163|r 619 ILIMTTNAGALEMSKARIGFGSSRNDDADKEALR-NFLSPEFLNRLDSII-PFFPL--SSDIIRQVVHKFIMKLELQLQE 694 (798)
Q Consensus 619 iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~-~~f~peflnRid~ii-~F~~l--~~~~~~~i~~~~l~~l~~~l~~ 694 (798)
=||--|| ......++ -.||-.++-|++.|= -.=|| -.+++.++++.+|..-.+.+.
T Consensus 272 Ri~AATh-------------------q~Le~lv~~G~FReDLfhRL~Vi~i~lPpLrER~eDi~~L~rhFL~~a~~~l~- 331 (471)
T TIGR01818 272 RIVAATH-------------------QDLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAAKELD- 331 (471)
T ss_pred EEEECCC-------------------HHHHHHHHCCCCHHHHHHHHCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCC-
T ss_conf 6673366-------------------56899965588135555512334621687212266899999999999887428-
Q ss_pred CCCE-EEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCC
Q ss_conf 6988-99988999999971898101532679999986235999999629676888489999607866
Q gi|254780163|r 695 KGIS-FHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKVPLADEILFGKLKKGGGVVKVSLNPDKS 760 (798)
Q Consensus 695 ~~i~-l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~g~~~~~v~~~~~~~ 760 (798)
+. =.+++.++++|-+..+=- --|.|..+++..- -+.++.. |.++.-+.+.
T Consensus 332 --~~~k~L~~~~~~~L~~~~WPG--NVR~LEN~cR~l~-----------~la~~~~-v~~~d~~~eL 382 (471)
T TIGR01818 332 --VEPKLLSPEALEALKRYDWPG--NVRELENVCRRLT-----------VLASGDE-VLVSDLPAEL 382 (471)
T ss_pred --CCCCCCCHHHHHHHHHCCCCC--CHHHHHHHHHHHH-----------HHCCCCE-EEEEECCHHH
T ss_conf --651134889999997258898--5245778999998-----------7346764-6777757655
No 304
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.91 E-value=0.00075 Score=46.81 Aligned_cols=158 Identities=18% Similarity=0.292 Sum_probs=75.0
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCC--CHHHHEEEEEEEEHHHHHCCCCCCCH--HHHHHHHHHHHHCCCCCE
Q ss_conf 67787489667641166899999999854898--83452014455404675306343123--789999999872038983
Q gi|254780163|r 223 RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMV--PDILLGARIFSLDMGNLIAGTRYRGD--FEERIKKIVKEIESYANA 298 (798)
Q Consensus 223 R~KNn~~lvG~~gvGktaive~la~~i~~~~v--p~~l~~~~i~~ld~~~l~ag~~~rg~--fe~r~~~~~~~~~~~~~~ 298 (798)
.++.|.+|||-||+|||+|...||+++-..=+ -..+. ..+..++..+.+- .|| |-+.=..++.++....+.
T Consensus 2 ~~~~nI~liG~~GsGKTtvgk~LA~~L~~~fiD~D~~Ie--~~~g~si~~if~~---~Ge~~FR~~E~~~l~~l~~~~~~ 76 (175)
T PRK00131 2 LKGPNIVLIGMMGAGKSTIGRLLAKRLGYEFIDTDHLIE--ARAGKSIPEIFEE---EGEAGFRELEEEVLAELLQRHNL 76 (175)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHH--HHHCCCHHHHHHH---HCHHHHHHHHHHHHHHHCCCCCE
T ss_conf 999808988899999899999999995969023988999--7616999999998---58899999999999965147985
Q ss_pred EEEECCHHHHHCCCCCCCCCC-CHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHH-HH
Q ss_conf 999736166301554443447-7788887663-02660388730489999985201114320014430687868999-99
Q gi|254780163|r 299 ILYIDEIHTLVGAGSASGISV-DASNLLKPAL-SSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAI-EI 375 (798)
Q Consensus 299 ilfideih~ligag~~~g~~~-d~an~lkP~L-~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~-~i 375 (798)
|+ +++||.. +..|+ .+| ..|-+ +-=-+.+++--+-+.++. .| ++.- ..+..+.+ .+
T Consensus 77 VI------------stGGG~v~~~~~~--~~L~~~g~v-V~L~~~~e~l~~Rl~~~~--~R---Pll~-~~~~~~~l~~l 135 (175)
T PRK00131 77 VI------------STGGGAVLREENR--ALLRERGTV-VYLDASFEELLRRLARDR--NR---PLLQ-TEDPKEKLRAL 135 (175)
T ss_pred EE------------ECCCCCCCCHHHH--HHHHCCCCE-EEEECCHHHHHHHHCCCC--CC---CCCC-CCCHHHHHHHH
T ss_conf 99------------7489822688999--999816937-998579999999864899--99---8788-99869999999
Q ss_pred HHHHHHHHHHHCCCEE--CC----HHHHHHHHHHHHH
Q ss_conf 9861276654103512--11----1789999986542
Q gi|254780163|r 376 VKGIKPYFEEHHQLRY--SK----EAIRAAVQLSVRH 406 (798)
Q Consensus 376 L~~~~~~ye~~h~v~~--~~----~al~~av~ls~ry 406 (798)
+..-.+.|++...+.+ ++ +++...+++-+.|
T Consensus 136 ~~~R~~~Y~~~Ad~~Idt~~~s~~ei~~~Ii~~L~~~ 172 (175)
T PRK00131 136 YEERDPLYEEVADLTIETDRRSPEEVVNEILELLELL 172 (175)
T ss_pred HHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 9999998975389999899999999999999999998
No 305
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=3.8e-05 Score=56.14 Aligned_cols=159 Identities=17% Similarity=0.242 Sum_probs=90.0
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCHHH-----------------HEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 4896676411668999999998548988345-----------------20144554046753063431237899999998
Q gi|254780163|r 228 PLYVGDPGVGKTAIAEGFAKQIVDGMVPDIL-----------------LGARIFSLDMGNLIAGTRYRGDFEERIKKIVK 290 (798)
Q Consensus 228 ~~lvG~~gvGktaive~la~~i~~~~vp~~l-----------------~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~ 290 (798)
-++.|++|+||++++..+|+.+.-.+ |... -|..+++-+-+ |...+ =+.++.+++
T Consensus 25 ~Lf~G~~G~GK~~lA~~~A~~LlC~~-~~~~~~Cg~C~sC~~~~~~~HPD~~~i~pe~~----~~~I~---IdqIR~l~~ 96 (328)
T PRK05707 25 YLLHGPAGIGKRALAERLAAFLLCEA-PQGGGACGSCKGCQLLAAGSHPDNFVLEPEEA----DKPIK---VDQVRELVS 96 (328)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHCCCCCCEEEEECCCC----CCCCC---HHHHHHHHH
T ss_conf 64479998679999999999984899-99989998888999987589998799842666----77697---999999999
Q ss_pred HHCC----CCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEE
Q ss_conf 7203----8983999736166301554443447778888766302--660388730489999985201114320014430
Q gi|254780163|r 291 EIES----YANAILYIDEIHTLVGAGSASGISVDASNLLKPALSS--GAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDV 364 (798)
Q Consensus 291 ~~~~----~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~r--g~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v 364 (798)
++.. .+.-|..||+.|.+ +..|+|-|-=.|.- +..-+|=.|+.. .+. =+.+-.|-|.+..
T Consensus 97 ~~~~~~~~g~~KV~iI~~Ae~m---------~~~AaNALLKtLEEPp~~t~fiL~t~~~--~~l---LpTI~SRCq~~~~ 162 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAM---------NRNAANALLKSLEEPSGQTVLLLISHQP--SRL---LPTIKSRCQQLAC 162 (328)
T ss_pred HHHHCCCCCCCEEEEEEHHHHH---------CHHHHHHHHHHHHCCCCCEEEEEEECCH--HHC---HHHHHHCCEEEEC
T ss_conf 9831766789579995028773---------8999999999850789875999860993--448---2588741413348
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 6878689999998612766541035121117899999865420155564679889986
Q gi|254780163|r 365 SEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDE 422 (798)
Q Consensus 365 ~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDe 422 (798)
..|+.++....|..-.+ ....+....++.++. --|.+|..+.++
T Consensus 163 ~~p~~e~~~~~L~~~~~--------~~~~~~a~~ll~la~------G~p~~A~~l~~~ 206 (328)
T PRK05707 163 PLPSNEPSLQWLQQALP--------ESDAEERIELLTLAA------GSPLRALQLHAQ 206 (328)
T ss_pred CCCCHHHHHHHHHHHCC--------CCCHHHHHHHHHHCC------CCHHHHHHHHCC
T ss_conf 99899999999997556--------557899999999749------999999987486
No 306
>KOG0745 consensus
Probab=97.90 E-value=2.8e-05 Score=57.09 Aligned_cols=76 Identities=29% Similarity=0.519 Sum_probs=58.5
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCH-HHHHHHHHHHHH----CCCCC
Q ss_conf 6778748966764116689999999985489883452014455404675306343123-789999999872----03898
Q gi|254780163|r 223 RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGD-FEERIKKIVKEI----ESYAN 297 (798)
Q Consensus 223 R~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~-fe~r~~~~~~~~----~~~~~ 297 (798)
-.|+|++|+|+.|+|||-++.-||+-. +||-.+.++.- +.-+.|.|| .|--+..++-++ ++...
T Consensus 224 LeKSNvLllGPtGsGKTllaqTLAr~l---dVPfaIcDcTt--------LTQAGYVGeDVEsvi~KLl~~A~~nVekAQq 292 (564)
T KOG0745 224 LEKSNVLLLGPTGSGKTLLAQTLARVL---DVPFAICDCTT--------LTQAGYVGEDVESVIQKLLQEAEYNVEKAQQ 292 (564)
T ss_pred EECCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEECCCC--------HHHCCCCCCCHHHHHHHHHHHCCCCHHHHHC
T ss_conf 403547997788876438999999970---88768732552--------2005534542999999999972578998826
Q ss_pred EEEEECCHHHHH
Q ss_conf 399973616630
Q gi|254780163|r 298 AILYIDEIHTLV 309 (798)
Q Consensus 298 ~ilfideih~li 309 (798)
=|.|+||+.-|-
T Consensus 293 GIVflDEvDKi~ 304 (564)
T KOG0745 293 GIVFLDEVDKIT 304 (564)
T ss_pred CEEEEEHHHHHC
T ss_conf 738876012441
No 307
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.89 E-value=0.00025 Score=50.32 Aligned_cols=145 Identities=22% Similarity=0.391 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEE-------------------
Q ss_conf 1122217899999999862267787489667641166899999999854898834520144-------------------
Q gi|254780163|r 203 VDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARI------------------- 263 (798)
Q Consensus 203 LDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i------------------- 263 (798)
+.-|.|.+. .+|.++|=.= ..-|.+|+|+||+|||-+++.|.--+-.=.-.+.|.-..|
T Consensus 190 ~~dv~Gq~~-akraleIAAA-GgHnlLl~GpPG~GKTMlA~rlp~ILPpLt~~e~lEv~~I~Svag~~~~~~~~~~rPfR 267 (506)
T PRK09862 190 LSDVVGQEQ-GKRGLEITAA-GGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFR 267 (506)
T ss_pred HHHHCCCHH-HHHHHHHHHC-CCCCEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
T ss_conf 565369799-9999999744-68865987699945989997751238998989999999999871898777754668503
Q ss_pred ---EEEEHHHHHCCCC-CCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEE---
Q ss_conf ---5540467530634-312378999999987203898399973616630155444344777888876630266038---
Q gi|254780163|r 264 ---FSLDMGNLIAGTR-YRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRC--- 336 (798)
Q Consensus 264 ---~~ld~~~l~ag~~-~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~--- 336 (798)
.+....+|+-|-. .| -.|+.-+-+=|||.||+.-. +-++-+.|+..|..|++++
T Consensus 268 ~PHHs~S~~aliGGG~~~~----------PGEISLAH~GVLFLDElpEF---------~r~vLe~LRqPLE~g~I~IsRa 328 (506)
T PRK09862 268 SPHHSASLTAMVGGGAIPG----------PGEISLAHNGVLFLDELPEF---------ERRTLDALREPIESGQIHLSRT 328 (506)
T ss_pred CCCCCCCHHHHHCCCCCCC----------CCCEEECCCCEEEECCHHCC---------CHHHHHHHHHHHCCCEEEEEEC
T ss_conf 7887654766637999999----------97222135757884550006---------8889998776224775999966
Q ss_pred ------------EE---------------ECCHHHHHHHHHC-CHHHHHHCEE-EEECCCC
Q ss_conf ------------87---------------3048999998520-1114320014-4306878
Q gi|254780163|r 337 ------------IG---------------STTYSEYRQFFEK-DKALVRRFQK-IDVSEPS 368 (798)
Q Consensus 337 ------------Ig---------------atT~~ey~~~~e~-d~al~rrF~~-i~v~ep~ 368 (798)
|+ .+|+.+-++|..| ...|-.||.. |.|..++
T Consensus 329 ~~~~~~PA~F~LVaAmNPCPCG~~~~~~~~Ct~~~~~rY~~rlSGPllDRiDl~v~v~~~~ 389 (506)
T PRK09862 329 RAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPP 389 (506)
T ss_pred CCEEEECCHHHHEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHCEEEEEECCCCC
T ss_conf 8679861533111103788888899997778989999998656622130364799816899
No 308
>PRK08181 transposase; Validated
Probab=97.89 E-value=0.00011 Score=52.86 Aligned_cols=100 Identities=16% Similarity=0.343 Sum_probs=70.3
Q ss_pred EEEEECCCCHHHHHHHHHHHH---HCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHH-CCCEEEEECC
Q ss_conf 688614320038899999873---047733772068861246530110478000256444310035551-5851777404
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLAF---ALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQ-NPYSVVLLDE 584 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la~---~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~-~P~sVvl~DE 584 (798)
+.+|+||||||||.||.+|+. -.+....-+.|++..+.-..++. .|.+...+++ ..+.++++||
T Consensus 108 Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~~~~L~~~L~~a~~------------~~~~~~~~~~l~~~dLLIiDe 175 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARR------------ELQLESAIAKLDKFDLLILDD 175 (269)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHH------------CCCHHHHHHHHHCCCEEEEHH
T ss_conf 08998999987889999999999987993999789999999999775------------583999999974446012201
Q ss_pred HH--HCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHH
Q ss_conf 45--502899999999877750217799776125429999424214553
Q gi|254780163|r 585 IE--KSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEM 631 (798)
Q Consensus 585 iE--KAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~ 631 (798)
+= .-.+.--++|+|++++=. ++ .=+|+|||+...+-
T Consensus 176 ~G~~~~~~~~~~~lf~lI~~Ry-----e~------~S~IITSn~~~~~W 213 (269)
T PRK08181 176 LAYVTKDQAETSVLFELISARY-----ER------RSILITANQPFGEW 213 (269)
T ss_pred CCCCCCCHHHHHHHHHHHHHHH-----CC------CCEEEECCCCHHHH
T ss_conf 0566799899999999999985-----78------88899889997788
No 309
>KOG0739 consensus
Probab=97.89 E-value=0.00012 Score=52.50 Aligned_cols=184 Identities=23% Similarity=0.380 Sum_probs=107.1
Q ss_pred HHHCHHHHHHHHHHHHHHH-H-CC-CCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCC
Q ss_conf 6534589999999998775-2-04-4565787406886143200388999998730477337720688612465301104
Q gi|254780163|r 478 VVYGQEEAIKKLSSSIKIA-R-AG-LSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIG 554 (798)
Q Consensus 478 ~v~GQ~~ai~~v~~~i~~~-~-~g-l~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiG 554 (798)
-|-|-+.|-+++-+++..- + -- ....++|.--+|+.||+|+||+.|||++|-.-..-|..+--|+. ||+-+|
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDL-----vSKWmG 208 (439)
T KOG0739 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL-----VSKWMG 208 (439)
T ss_pred HHCCCHHHHHHHHHHEEECCCCHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHH-----HHHHHC
T ss_conf 301405689998754350002535415887754257886799975779999987414770687301788-----998732
Q ss_pred CCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHH-----------CCHHHHHHH-HHHHHHHHCCCCCCCEECCCCEEEEE
Q ss_conf 780002564443100355515851777404455-----------028999999-99877750217799776125429999
Q gi|254780163|r 555 APPGYVGFGQGGILADSVDQNPYSVVLLDEIEK-----------SHPDVLNIL-LQIMDYGILTDQSGKKISFRNVILIM 622 (798)
Q Consensus 555 appGYvG~~egg~Lte~vr~~P~sVvl~DEiEK-----------Ah~~v~~~l-lqild~G~ltd~~Gr~vdf~n~iii~ 622 (798)
-.--.| -+|.|.-|.+--|+|+.|||+- |.+.+-.-| .|+- |.=.|+.| ++++-
T Consensus 209 ESEkLV-----knLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMq--GVG~d~~g-------vLVLg 274 (439)
T KOG0739 209 ESEKLV-----KNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQ--GVGNDNDG-------VLVLG 274 (439)
T ss_pred CHHHHH-----HHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHH--CCCCCCCC-------EEEEE
T ss_conf 179999-----99999987349947986344443268877711777777778887640--66658886-------48972
Q ss_pred ECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHH-HHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 424214553303689882111488999998728878817768289628899999999-9999999999999866988999
Q gi|254780163|r 623 TTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQ-VVHKFIMKLELQLQEKGISFHF 701 (798)
Q Consensus 623 TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~-i~~~~l~~l~~~l~~~~i~l~~ 701 (798)
.+|+- =....++++.|- -|| |-||.....+. ...+.| -...-.+
T Consensus 275 ATNiP-----------------w~LDsAIRRRFe----kRI-----YIPLPe~~AR~~MF~lhl---------G~tp~~L 319 (439)
T KOG0739 275 ATNIP-----------------WVLDSAIRRRFE----KRI-----YIPLPEAHARARMFKLHL---------GDTPHVL 319 (439)
T ss_pred CCCCC-----------------HHHHHHHHHHHH----CCE-----ECCCCCHHHHHHHHEECC---------CCCCCCC
T ss_conf 37884-----------------367799998765----023-----010873787655503204---------7886413
Q ss_pred CHHHHHHHHHC--CCC
Q ss_conf 88999999971--898
Q gi|254780163|r 702 SEEVINWLVSH--GYD 715 (798)
Q Consensus 702 ~~~~~~~l~~~--~~~ 715 (798)
++.-...|+.+ ||+
T Consensus 320 T~~d~~eL~~kTeGyS 335 (439)
T KOG0739 320 TEQDFKELARKTEGYS 335 (439)
T ss_pred CHHHHHHHHHHCCCCC
T ss_conf 3566999976437877
No 310
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=97.88 E-value=0.00049 Score=48.13 Aligned_cols=217 Identities=18% Similarity=0.238 Sum_probs=121.8
Q ss_pred CHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEH------------
Q ss_conf 00246653458999999999877520445657874068861432003889999987304773377206------------
Q gi|254780163|r 473 KNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDM------------ 540 (798)
Q Consensus 473 ~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dm------------ 540 (798)
..+-.-++|||.--.++... .-+--+|..|..|+-|+|||-++++||.-+...-+..++
T Consensus 13 ~~pf~aivGqd~lk~aL~l~---------av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~ 83 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLN---------AVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEM 83 (423)
T ss_pred CCCHHHHCCCHHHHHHHHHH---------HCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCHHHH
T ss_conf 16656543753777887653---------026310426876688752779999999867963321688788998870555
Q ss_pred HHHHCCC-----------------------CCCHHCCCC-CHHC-CCC----CCCCCCHHHHHCCCEEEEECCHHHCCHH
Q ss_conf 8861246-----------------------530110478-0002-564----4431003555158517774044550289
Q gi|254780163|r 541 SEYMERH-----------------------AVSRLIGAP-PGYV-GFG----QGGILADSVDQNPYSVVLLDEIEKSHPD 591 (798)
Q Consensus 541 sey~e~~-----------------------~vs~LiGap-pGYv-G~~----egg~Lte~vr~~P~sVvl~DEiEKAh~~ 591 (798)
.+.+..+ +-.||+|+= |-.+ .++ +-|+|-.|=| .|+.+||+---+..
T Consensus 84 c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnR----GIlYvDEvnlL~d~ 159 (423)
T COG1239 84 CDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANR----GILYVDEVNLLDDH 159 (423)
T ss_pred HHHHHHHCCCCCCCCCCCEECCEECCCCCCCHHHHCCCCCHHHHHHCCCCCCCCCCHHHCCC----CEEEEECCCCCCHH
T ss_conf 19998620232445422100312238876304330045679999726830027751100358----87987233435189
Q ss_pred HHHHHHHHHHHHHCC-CCCCCEECC-CCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEE-EE
Q ss_conf 999999987775021-779977612-542999942421455330368988211148899999872887881776828-96
Q gi|254780163|r 592 VLNILLQIMDYGILT-DQSGKKISF-RNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSI-IP 668 (798)
Q Consensus 592 v~~~llqild~G~lt-d~~Gr~vdf-~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~i-i~ 668 (798)
+.|+||+++.+|+-+ --.|-.+.. .+.++|-|-|-.- .-.+|-++.|+... =+
T Consensus 160 lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEe------------------------GeLrpqLlDRfg~~v~~ 215 (423)
T COG1239 160 LVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEE------------------------GELRPQLLDRFGLEVDT 215 (423)
T ss_pred HHHHHHHHHHHCCCEEEECCEEECCCCCEEEEEECCCCC------------------------CCCCHHHHHHHCCEEEC
T ss_conf 999999999717740335750313676179996448544------------------------66324667541115623
Q ss_pred CCCCCHHHHHHHH-----------------HHHHHHHHHHH-H-HC-CCEEEECHHHHHHHHHCCCCC-CCCCHHHHHH
Q ss_conf 2889999999999-----------------99999999999-8-66-988999889999999718981-0153267999
Q gi|254780163|r 669 FFPLSSDIIRQVV-----------------HKFIMKLELQL-Q-EK-GISFHFSEEVINWLVSHGYDV-KMGARPLERI 726 (798)
Q Consensus 669 F~~l~~~~~~~i~-----------------~~~l~~l~~~l-~-~~-~i~l~~~~~~~~~l~~~~~~~-~~GAR~l~r~ 726 (798)
--|.+.++-..|+ ......+..+. . .. =..+++++.+..+++..|..- -.|-|+.-++
T Consensus 216 ~~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~radi~~ 294 (423)
T COG1239 216 HYPLDLEERVEIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRADIVV 294 (423)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 4788788889999998875008299999999999999999999984466646767799999999998565787425678
No 311
>smart00350 MCM minichromosome maintenance proteins.
Probab=97.86 E-value=0.0013 Score=45.10 Aligned_cols=180 Identities=18% Similarity=0.232 Sum_probs=88.0
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCC---CCCCHHHHHHHHHHHHHCCCCCEE
Q ss_conf 67787489667641166899999999854898834520144554046753063---431237899999998720389839
Q gi|254780163|r 223 RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGT---RYRGDFEERIKKIVKEIESYANAI 299 (798)
Q Consensus 223 R~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~---~~rg~fe~r~~~~~~~~~~~~~~i 299 (798)
|.--|.+|||+||+||+.+....++ |+...|-..=++ -..+.|-|.. ..-|||-=.--+ -+-+++ =|
T Consensus 234 Rg~ihiLLvGDPGtgKSqlLk~~~~-iaprsvytsG~g-----sS~aGLTaav~rd~~~ge~~leaGA---LVlAD~-Gi 303 (509)
T smart00350 234 RGDINILLLGDPGTAKSQLLKYVEK-TAPRAVYTTGKG-----SSAVGLTAAVTRDPETREFTLEGGA---LVLADN-GV 303 (509)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-HCCCEEEEECCC-----CCCCCCEEEEEECCCCCCEEECCCC---EECCCC-CE
T ss_conf 1541499846998236299999998-588606873444-----5557706899981788837872564---120567-54
Q ss_pred EEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCC---------------EEEEEECCHHHHHHH---------HHCCHHH
Q ss_conf 9973616630155444344777888876630266---------------038873048999998---------5201114
Q gi|254780163|r 300 LYIDEIHTLVGAGSASGISVDASNLLKPALSSGA---------------VRCIGSTTYSEYRQF---------FEKDKAL 355 (798)
Q Consensus 300 lfideih~ligag~~~g~~~d~an~lkP~L~rg~---------------~~~IgatT~~ey~~~---------~e~d~al 355 (798)
..|||+.-+= .-|-+ -|--+|..+. -.+++|+.|. |-+| +.-.++|
T Consensus 304 ccIDEfdKm~--------~~dr~-alhEaMEQQtisiaKaGi~~tL~aR~sVlAAaNP~-~g~yd~~~s~~eni~l~~~L 373 (509)
T smart00350 304 CCIDEFDKMD--------DSDRT-AIHEAMEQQTISIAKAGITTTLNARCSVLAAANPI-GGRYDPKLTPEENIDLPAPI 373 (509)
T ss_pred EEEEEHHHCC--------HHHHH-HHHHHHHHCEEEEECCCEEEEEECCCEEEEEECCC-CCCCCCCCCHHHHCCCCHHH
T ss_conf 7852132078--------77899-99999974877874375179985573599865565-56378889999946898035
Q ss_pred HHHCEEEE--ECCCCHHHHHHHHHHHHHHHH-------HHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 32001443--068786899999986127665-------410351211178999998654201555646798899865
Q gi|254780163|r 356 VRRFQKID--VSEPSIEDAIEIVKGIKPYFE-------EHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEA 423 (798)
Q Consensus 356 ~rrF~~i~--v~ep~~~~~~~iL~~~~~~ye-------~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea 423 (798)
-.||.-|. .++|+.+.-..|-+.+...+- ......++.+-+..-+.++..++.- .|++.|.++|-+.
T Consensus 374 LSRFDLIf~l~D~~~~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~lrkYI~yar~~~~P-~ls~eA~~~i~~~ 449 (509)
T smart00350 374 LSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKP-KLSEEAAEKLVKA 449 (509)
T ss_pred HHHCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHH
T ss_conf 410238999615898788999999999987415887545568868999999999999862899-7899999999999
No 312
>KOG0742 consensus
Probab=97.86 E-value=0.00022 Score=50.69 Aligned_cols=157 Identities=24% Similarity=0.349 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH--HCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCC
Q ss_conf 9999999998775204456578740688614320038899999873--04773377206886124653011047800025
Q gi|254780163|r 484 EAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAF--ALGVQLLRFDMSEYMERHAVSRLIGAPPGYVG 561 (798)
Q Consensus 484 ~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~--~~~~~lir~dmsey~e~~~vs~LiGappGYvG 561 (798)
.+.+.-++.|-++-+.-+..+-|.-..||-||+|+|||..||.||. |+.-++ |.-..|+ |-|--|
T Consensus 361 psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~--------mTGGDVA-----PlG~qa 427 (630)
T KOG0742 361 PSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAI--------MTGGDVA-----PLGAQA 427 (630)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHEEEECCCCCCHHHHHHHHHHHCCCCEEH--------HCCCCCC-----CCHHHH
T ss_conf 779999999988740430024304400324799986049999998852874100--------1378755-----521788
Q ss_pred CCCCCCCCHHHHHCCCEEEEE-CCHHH------------CCHHHHHHHHHHHHHHHCCCCCCCEECCC-CEEEEEECCCC
Q ss_conf 644431003555158517774-04455------------02899999999877750217799776125-42999942421
Q gi|254780163|r 562 FGQGGILADSVDQNPYSVVLL-DEIEK------------SHPDVLNILLQIMDYGILTDQSGKKISFR-NVILIMTTNAG 627 (798)
Q Consensus 562 ~~egg~Lte~vr~~P~sVvl~-DEiEK------------Ah~~v~~~llqild~G~ltd~~Gr~vdf~-n~iii~TsN~G 627 (798)
-..=.+|...-.+.--..+|| ||-+- |...-+|.|| |. +-|-+ ..++++.||-
T Consensus 428 VTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlL--fR----------TGdqSrdivLvlAtNr- 494 (630)
T KOG0742 428 VTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALL--FR----------TGDQSRDIVLVLATNR- 494 (630)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHH--HH----------CCCCCCCEEEEEECCC-
T ss_conf 9999998788751566449986116789987520102588999998898--76----------2565542689960588-
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 455330368988211148899999872887881776828962889999999999999999999
Q gi|254780163|r 628 ALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLEL 690 (798)
Q Consensus 628 ~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~ 690 (798)
.- +...++. .|||++|-|---..++-.+++.++|++...
T Consensus 495 -------pg---------dlDsAV~--------DRide~veFpLPGeEERfkll~lYlnkyi~ 533 (630)
T KOG0742 495 -------PG---------DLDSAVN--------DRIDEVVEFPLPGEEERFKLLNLYLNKYIL 533 (630)
T ss_pred -------CC---------CHHHHHH--------HHHHHHEECCCCCHHHHHHHHHHHHHHHHC
T ss_conf -------32---------1016787--------655541306899778999999999999814
No 313
>KOG0991 consensus
Probab=97.86 E-value=0.00048 Score=48.19 Aligned_cols=180 Identities=21% Similarity=0.343 Sum_probs=106.4
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHC
Q ss_conf 58877548611222178999999998622677874896676411668999999998548988345201445540467530
Q gi|254780163|r 194 LTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIA 273 (798)
Q Consensus 194 LTe~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a 273 (798)
..++-|--+++-++|-|+-++|+-.+---++-.|.++-|+||+|||.-+.-||+...-...-+ -+++|+.+
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke-----~vLELNAS---- 87 (333)
T KOG0991 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKE-----AVLELNAS---- 87 (333)
T ss_pred HHHHHCCHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHCHHHHH-----HHHHCCCC----
T ss_conf 788608529988217798999999999728998667527999861648999999983806665-----76320576----
Q ss_pred CCCCCCH--HHHHHHHHHHH-HCC-CC-CEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHH--CCCCEEEEEECCHHHHH
Q ss_conf 6343123--78999999987-203-89-839997361663015544434477788887663--02660388730489999
Q gi|254780163|r 274 GTRYRGD--FEERIKKIVKE-IES-YA-NAILYIDEIHTLVGAGSASGISVDASNLLKPAL--SSGAVRCIGSTTYSEYR 346 (798)
Q Consensus 274 g~~~rg~--fe~r~~~~~~~-~~~-~~-~~ilfideih~ligag~~~g~~~d~an~lkP~L--~rg~~~~IgatT~~ey~ 346 (798)
--||= --.++|..-.. +.- .| .-|...||...+- +| |-.-|.-.+ -+.+-|++-|+..++
T Consensus 88 --deRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT-~g--------AQQAlRRtMEiyS~ttRFalaCN~s~-- 154 (333)
T KOG0991 88 --DERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT-AG--------AQQALRRTMEIYSNTTRFALACNQSE-- 154 (333)
T ss_pred --CCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHH-HH--------HHHHHHHHHHHHCCCCHHHHHHCCHH--
T ss_conf --554608999999999872034899852489961522020-68--------99999999999706320000015421--
Q ss_pred HHHHCCH---HHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHH
Q ss_conf 9852011---1432001443068786899999986127665410351211178999998654
Q gi|254780163|r 347 QFFEKDK---ALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVR 405 (798)
Q Consensus 347 ~~~e~d~---al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~r 405 (798)
|.||+=. |+- ||.+ .|..+- |..+..- -+--+|.||+++|++.+..++-
T Consensus 155 KIiEPIQSRCAiL-Rysk-----lsd~qi---L~Rl~~v-~k~Ekv~yt~dgLeaiifta~G 206 (333)
T KOG0991 155 KIIEPIQSRCAIL-RYSK-----LSDQQI---LKRLLEV-AKAEKVNYTDDGLEAIIFTAQG 206 (333)
T ss_pred HHHHHHHHHHHHH-HHCC-----CCHHHH---HHHHHHH-HHHHCCCCCCCHHHHHHHHCCC
T ss_conf 3222677345765-3222-----678999---9999999-9870788771147785544166
No 314
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.85 E-value=0.0005 Score=48.10 Aligned_cols=22 Identities=50% Similarity=0.706 Sum_probs=11.5
Q ss_pred EEECCCCCHHHHHHHHHHHHHH
Q ss_conf 8966764116689999999985
Q gi|254780163|r 229 LYVGDPGVGKTAIAEGFAKQIV 250 (798)
Q Consensus 229 ~lvG~~gvGktaive~la~~i~ 250 (798)
++.|+.|+||++++..+|+.+.
T Consensus 25 L~~Gp~G~Gk~~~A~~~A~~ll 46 (325)
T PRK08699 25 LFVGKKGTGKTAFARFAAKALL 46 (325)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
T ss_conf 7579999789999999999982
No 315
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=97.84 E-value=0.00014 Score=52.10 Aligned_cols=108 Identities=23% Similarity=0.397 Sum_probs=63.4
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHC---CCCCCCHHHHHHHHHHHHHCCCCCEE
Q ss_conf 677874896676411668999999998548988345201445540467530---63431237899999998720389839
Q gi|254780163|r 223 RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIA---GTRYRGDFEERIKKIVKEIESYANAI 299 (798)
Q Consensus 223 R~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a---g~~~rg~fe~r~~~~~~~~~~~~~~i 299 (798)
+++.|.++.|+||+|||-++-+++...++. +++++-..+..|+. .++-.|.+++.+ +.+.+ --+
T Consensus 45 ~~~~Nlll~G~~GtGKThLA~Ai~~~~~~~-------g~~v~f~~~~~L~~~l~~~~~~~~~~~~l----~~~~~--~dl 111 (178)
T pfam01695 45 EQAENLLLLGPPGVGKTHLACALGHQACRA-------GYSVLFTRTPDLVEQLKRARGDGRLARTL----QRLAK--ADL 111 (178)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHHHHHHC-------CCEEEEEECHHHHHHHHHHHHCCCHHHHH----HHHHC--CCE
T ss_conf 158768998999987899999999999986-------98599996167999999875267499999----99625--897
Q ss_pred EEECCHHHHHCCCCCCCCCCCHHHHHHHHH-CCCC-EEEEEEC--CHHHHHHHHH
Q ss_conf 997361663015544434477788887663-0266-0388730--4899999852
Q gi|254780163|r 300 LYIDEIHTLVGAGSASGISVDASNLLKPAL-SSGA-VRCIGST--TYSEYRQFFE 350 (798)
Q Consensus 300 lfideih~ligag~~~g~~~d~an~lkP~L-~rg~-~~~Igat--T~~ey~~~~e 350 (798)
|.|||+ |....+. ..+++|--.+ .|=+ -.+|-+| .++|+..+|.
T Consensus 112 LIiDDl------G~~~~s~-~~~~~lf~li~~Rye~~stIiTSN~~~~~W~~~~~ 159 (178)
T pfam01695 112 LILDDI------GYLPLSQ-EAAHLLFELISDRYERRSTILTSNLPFGEWHEVFG 159 (178)
T ss_pred EEEEHH------CCCCCCH-HHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHCC
T ss_conf 887200------1656898-99999999999997568868776899789987648
No 316
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.84 E-value=9.3e-05 Score=53.35 Aligned_cols=87 Identities=23% Similarity=0.309 Sum_probs=51.9
Q ss_pred CCCEEEEECCCCHHHHHHHHHHH------HHCCCCEEEEEH---HHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCC
Q ss_conf 74068861432003889999987------304773377206---886124653011047800025644431003555158
Q gi|254780163|r 506 PIGCYVFSGPTGVGKTEISKQLA------FALGVQLLRFDM---SEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNP 576 (798)
Q Consensus 506 P~g~flf~GptGvGKTelak~la------~~~~~~lir~dm---sey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P 576 (798)
+-+++.|+||||||||-+--.|| .+-..+||+.|- +-.-.=-+.++++|-|= ||-++- -.|-+++.++-
T Consensus 222 ~~kvi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQLktYa~Il~iPv-~vv~~~-~el~~al~~~~ 299 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPF-YPVKDI-KKFKETLARDG 299 (432)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCE-EEEECH-HHHHHHHHHCC
T ss_conf 7629999899998889999999999999749927999526653779999999999859945-995189-99999998569
Q ss_pred CEEEEECCHHHCCHHHHH
Q ss_conf 517774044550289999
Q gi|254780163|r 577 YSVVLLDEIEKSHPDVLN 594 (798)
Q Consensus 577 ~sVvl~DEiEKAh~~v~~ 594 (798)
+-|||.|-.=.-|.|...
T Consensus 300 ~DlILIDTAGrS~rd~~~ 317 (432)
T PRK12724 300 SELILIDTAGYSHRNLEQ 317 (432)
T ss_pred CCEEEEECCCCCCCCHHH
T ss_conf 999999299989789999
No 317
>KOG0652 consensus
Probab=97.82 E-value=0.00036 Score=49.11 Aligned_cols=156 Identities=26% Similarity=0.508 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHH--------HHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHH
Q ss_conf 4589999999998--------77520445657874068861432003889999987304773377206886124653011
Q gi|254780163|r 481 GQEEAIKKLSSSI--------KIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRL 552 (798)
Q Consensus 481 GQ~~ai~~v~~~i--------~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~L 552 (798)
|-+.-|..+.++| +--..|+++| -|+++ .||+|+|||.+|++-|-....-|+.+- -+.-|...
T Consensus 175 GldkQIqELvEAiVLpmth~ekF~~lgi~pP---KGvLm-YGPPGTGKTlmARAcAaqT~aTFLKLA-----gPQLVQMf 245 (424)
T KOG0652 175 GLDKQIQELVEAIVLPMTHKEKFENLGIRPP---KGVLM-YGPPGTGKTLMARACAAQTNATFLKLA-----GPQLVQMF 245 (424)
T ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHCCCCCC---CCEEE-ECCCCCCHHHHHHHHHHHCCCHHHHHC-----CHHHHHHH
T ss_conf 5789999999886145656878874688899---72276-579997577999999874010688732-----64777665
Q ss_pred CCCCCHHCCCCCCCCCC-----HHHHHCCCEEEEECCHHH-----------CCHHHHHHHHHHHH--HHHCCCCCCCEEC
Q ss_conf 04780002564443100-----355515851777404455-----------02899999999877--7502177997761
Q gi|254780163|r 553 IGAPPGYVGFGQGGILA-----DSVDQNPYSVVLLDEIEK-----------SHPDVLNILLQIMD--YGILTDQSGKKIS 614 (798)
Q Consensus 553 iGappGYvG~~egg~Lt-----e~vr~~P~sVvl~DEiEK-----------Ah~~v~~~llqild--~G~ltd~~Gr~vd 614 (798)
|| +|..|. -+-.+.| ++|+.||++- ..++|+...|.+|. +|.-.|..
T Consensus 246 IG---------dGAkLVRDAFaLAKEkaP-~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~----- 310 (424)
T KOG0652 246 IG---------DGAKLVRDAFALAKEKAP-TIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDR----- 310 (424)
T ss_pred HC---------CHHHHHHHHHHHHHCCCC-EEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC-----
T ss_conf 33---------418899999987533498-389973002323343653123438999999999986048997562-----
Q ss_pred CCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHH--CCCCEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 2542999942421455330368988211148899999872887881--7768289628899999999999999999
Q gi|254780163|r 615 FRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFL--NRLDSIIPFFPLSSDIIRQVVHKFIMKL 688 (798)
Q Consensus 615 f~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~pefl--nRid~ii~F~~l~~~~~~~i~~~~l~~l 688 (798)
.-+|..+|- . ..+-|.++ +|+|.-|-|-.-+.+.-.+|..+.-++.
T Consensus 311 ---vKviAATNR---------v----------------DiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKM 358 (424)
T KOG0652 311 ---VKVIAATNR---------V----------------DILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKM 358 (424)
T ss_pred ---EEEEEECCC---------C----------------CCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf ---678852164---------3----------------43488886446644443488997789889998864005
No 318
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.80 E-value=0.00074 Score=46.87 Aligned_cols=152 Identities=20% Similarity=0.343 Sum_probs=77.2
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHCCC--CCHHHHEEEEEEEEHHHHHCCCCCCCH--HHHHHHHHHHHHCCCCCE
Q ss_conf 6778748966764116689999999985489--883452014455404675306343123--789999999872038983
Q gi|254780163|r 223 RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGM--VPDILLGARIFSLDMGNLIAGTRYRGD--FEERIKKIVKEIESYANA 298 (798)
Q Consensus 223 R~KNn~~lvG~~gvGktaive~la~~i~~~~--vp~~l~~~~i~~ld~~~l~ag~~~rg~--fe~r~~~~~~~~~~~~~~ 298 (798)
..|+|.+|||-||+|||+|-.-||+++-..= .-..+. +-+..++..+.+ ..|| |-+.=..++.++....++
T Consensus 2 ~~kknI~LiG~mGsGKstvgk~LA~~l~~~fiD~D~~Ie--~~~g~si~~If~---~~Ge~~FR~~E~~~l~~l~~~~~~ 76 (172)
T PRK05057 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIE--KRTGADIGWVFD---VEGEEGFRDREEKVINELTEKQGI 76 (172)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHH--HHHCCCHHHHHH---HHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 988828988999998899999999996999687809999--997989999999---974999999999999988547997
Q ss_pred EEEECCHHHHHCCCCCCCCC-CCHHHHHHHHH-CCCCEEEEEECCHHH-HHHHHHCCHHHHHHCEEEEECCCCHHHHHH-
Q ss_conf 99973616630155444344-77788887663-026603887304899-999852011143200144306878689999-
Q gi|254780163|r 299 ILYIDEIHTLVGAGSASGIS-VDASNLLKPAL-SSGAVRCIGSTTYSE-YRQFFEKDKALVRRFQKIDVSEPSIEDAIE- 374 (798)
Q Consensus 299 ilfideih~ligag~~~g~~-~d~an~lkP~L-~rg~~~~IgatT~~e-y~~~~e~d~al~rrF~~i~v~ep~~~~~~~- 374 (798)
|+ +++||. ++..|+ -.| ..|.+-.+-+ +++. +++ +..+. .| | .+...+..+++.
T Consensus 77 VI------------stGGG~v~~~~~~--~~L~~~g~vv~L~~-~~~~~~~R-~~~~~--~R---P-ll~~~~~~~~~~~ 134 (172)
T PRK05057 77 VL------------ATGGGSVKSRETR--NRLSARGVVVYLET-TIEKQLAR-TQRDK--KR---P-LLQVDDPREVLEA 134 (172)
T ss_pred EE------------ECCCCCCCCHHHH--HHHHHCCEEEEEEC-CHHHHHHH-HCCCC--CC---C-CCCCCCHHHHHHH
T ss_conf 99------------7898535889999--99996695899959-98999998-05899--99---9-7989987999999
Q ss_pred HHHHHHHHHHHHCCCEE--CCHHHHHHHH
Q ss_conf 99861276654103512--1117899999
Q gi|254780163|r 375 IVKGIKPYFEEHHQLRY--SKEAIRAAVQ 401 (798)
Q Consensus 375 iL~~~~~~ye~~h~v~~--~~~al~~av~ 401 (798)
++..-.+.|+++..+.+ .+...+.+++
T Consensus 135 l~~~R~~~Y~~~Ad~~I~td~~~~~~i~~ 163 (172)
T PRK05057 135 LANERNPLYEEIADVTVRTDDQSAKVVAN 163 (172)
T ss_pred HHHHHHHHHHHHCCEEEECCCCCHHHHHH
T ss_conf 99999999998699999899999999999
No 319
>KOG0727 consensus
Probab=97.78 E-value=0.00037 Score=49.00 Aligned_cols=190 Identities=23% Similarity=0.356 Sum_probs=114.1
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHH
Q ss_conf 74896676411668999999998548988345201445540467530634312378999999987203898399973616
Q gi|254780163|r 227 NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIH 306 (798)
Q Consensus 227 n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih 306 (798)
.++|-|+||.|||-++...|.--.. .++.+..+.++ .||.||--.-++.++.-++.+.+.|+|||||.
T Consensus 191 gvllygppg~gktml~kava~~t~a----------~firvvgsefv--qkylgegprmvrdvfrlakenapsiifideid 258 (408)
T KOG0727 191 GVLLYGPPGTGKTMLAKAVANHTTA----------AFIRVVGSEFV--QKYLGEGPRMVRDVFRLAKENAPSIIFIDEID 258 (408)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCH----------HEEEECCHHHH--HHHHCCCCHHHHHHHHHHHCCCCCEEEEEHHH
T ss_conf 2277579997578999998612611----------14463018999--99855483899999998761698379862245
Q ss_pred HHHC----CCCCCCCCCCHHHHHHHHH-------CCCCEEEEEECCHHHHHHHHHCCHHHHH--HC-EEEEECCCCHHHH
Q ss_conf 6301----5544434477788887663-------0266038873048999998520111432--00-1443068786899
Q gi|254780163|r 307 TLVG----AGSASGISVDASNLLKPAL-------SSGAVRCIGSTTYSEYRQFFEKDKALVR--RF-QKIDVSEPSIEDA 372 (798)
Q Consensus 307 ~lig----ag~~~g~~~d~an~lkP~L-------~rg~~~~IgatT~~ey~~~~e~d~al~r--rF-~~i~v~ep~~~~~ 372 (798)
.|-- |..+.. -.+-.+|--.| ..-.+++|.||.-.. .-||||-| |. .+|..+=|+..+.
T Consensus 259 aiatkrfdaqtgad--revqril~ellnqmdgfdq~~nvkvimatnrad-----tldpallrpgrldrkiefplpdrrqk 331 (408)
T KOG0727 259 AIATKRFDAQTGAD--REVQRILIELLNQMDGFDQTTNVKVIMATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQK 331 (408)
T ss_pred HHHHHHCCCCCCCC--HHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCC-----CCCHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf 67664124444631--899999999997514767666558998327555-----66876628764344435779854665
Q ss_pred HHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 9999861276654103512111789999986542015556467988-99865333321144322113657899986631
Q gi|254780163|r 373 IEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAID-VIDEAGASQILQPLSKRRKFITEKDIKKTIAS 450 (798)
Q Consensus 373 ~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAid-llDea~a~~~~~~~~~~~~~~~~~~i~~~~~~ 450 (798)
.-+...+.++. ..++++ +|-. |+ .-|||--- -+...|--..+.+..+.|-.|..+|..+....
T Consensus 332 rlvf~titskm------~ls~~v-----dle~-~v---~rpdkis~adi~aicqeagm~avr~nryvvl~kd~e~ay~~ 395 (408)
T KOG0727 332 RLVFSTITSKM------NLSDEV-----DLED-LV---ARPDKISGADINAICQEAGMLAVRENRYVVLQKDFEKAYKT 395 (408)
T ss_pred HHHHHHHHHCC------CCCCCC-----CHHH-HH---CCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHH
T ss_conf 22277543102------678544-----8898-74---18543434669999999768998762546527779999986
No 320
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.76 E-value=0.00096 Score=46.05 Aligned_cols=211 Identities=17% Similarity=0.314 Sum_probs=113.6
Q ss_pred HHHHHHHCHH-HHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH---HCCCC--EEEEEHHHHHCCC
Q ss_conf 0246653458-9999999998775204456578740688614320038899999873---04773--3772068861246
Q gi|254780163|r 474 NLGTVVYGQE-EAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAF---ALGVQ--LLRFDMSEYMERH 547 (798)
Q Consensus 474 ~l~~~v~GQ~-~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~---~~~~~--lir~dmsey~e~~ 547 (798)
.+..-|+|-. ....+++.++.- .|.++-.-+++.||+|.|||.|..+.+- ....+ .+-+.-+.|+.+.
T Consensus 85 tFdnFv~g~~N~~A~aa~~~va~------~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~ 158 (408)
T COG0593 85 TFDNFVVGPSNRLAYAAAKAVAE------NPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDF 158 (408)
T ss_pred CHHHEEECCCHHHHHHHHHHHHH------CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHH
T ss_conf 55422047744999999999875------668868957998799997899999999999862998648850489989999
Q ss_pred CCCHHCCCCCHHCCCCCCCCCCHHHHHC-CCEEEEECCHHHC------CHHHHHHHHHHHHHHHCCCCCCCEECCCCEEE
Q ss_conf 5301104780002564443100355515-8517774044550------28999999998777502177997761254299
Q gi|254780163|r 548 AVSRLIGAPPGYVGFGQGGILADSVDQN-PYSVVLLDEIEKS------HPDVLNILLQIMDYGILTDQSGKKISFRNVIL 620 (798)
Q Consensus 548 ~vs~LiGappGYvG~~egg~Lte~vr~~-P~sVvl~DEiEKA------h~~v~~~llqild~G~ltd~~Gr~vdf~n~ii 620 (798)
--+ +- + +. ++.-|+. -.-++|+|.|+-= ....|++|=-+.+.|. -|
T Consensus 159 v~a-~~----------~-~~-~~~Fk~~y~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~k--------------qI 211 (408)
T COG0593 159 VKA-LR----------D-NE-MEKFKEKYSLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGK--------------QI 211 (408)
T ss_pred HHH-HH----------H-HH-HHHHHHHHCCCEEEECHHHHHCCCHHHHHHHHHHHHHHHHCCC--------------EE
T ss_conf 999-88----------5-04-8888876426735551386756771579999999998885088--------------79
Q ss_pred EEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 99424214553303689882111488999998728878817768289628899999999999999999999986698899
Q gi|254780163|r 621 IMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFH 700 (798)
Q Consensus 621 i~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~ 700 (798)
++||.---.+ -....+.|+..|.- --++.-.|++.+....|+.+ +...++ +.
T Consensus 212 vltsdr~P~~-------------l~~~~~rL~SR~~~------Gl~~~I~~Pd~e~r~aiL~k-------ka~~~~--~~ 263 (408)
T COG0593 212 VLTSDRPPKE-------------LNGLEDRLRSRLEW------GLVVEIEPPDDETRLAILRK-------KAEDRG--IE 263 (408)
T ss_pred EEECCCCCHH-------------HCCCCHHHHHHHHC------EEEEEECCCCHHHHHHHHHH-------HHHHCC--CC
T ss_conf 9970788322-------------11035889989863------05775279888999999999-------998658--88
Q ss_pred ECHHHHHHHHHCCCCCCCCCHHHHHHHHH----------HHHHHHHHHHHCCCCCCCC
Q ss_conf 98899999997189810153267999998----------6235999999629676888
Q gi|254780163|r 701 FSEEVINWLVSHGYDVKMGARPLERIIKE----------HVKVPLADEILFGKLKKGG 748 (798)
Q Consensus 701 ~~~~~~~~l~~~~~~~~~GAR~l~r~i~~----------~i~~~la~~il~~~~~~g~ 748 (798)
+++++.+||+.+..+. -|.|..++.+ .|.-+++.++|..-+..+.
T Consensus 264 i~~ev~~~la~~~~~n---vReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 264 IPDEVLEFLAKRLDRN---VRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRAGE 318 (408)
T ss_pred CCHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 8879999999970030---999999999999999853875769999999998640145
No 321
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=97.74 E-value=0.00013 Score=52.22 Aligned_cols=175 Identities=23% Similarity=0.387 Sum_probs=110.8
Q ss_pred HHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH----HH-C------CCCEEEEEHHHHHCCC
Q ss_conf 53458999999999877520445657874068861432003889999987----30-4------7733772068861246
Q gi|254780163|r 479 VYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLA----FA-L------GVQLLRFDMSEYMERH 547 (798)
Q Consensus 479 v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la----~~-~------~~~lir~dmsey~e~~ 547 (798)
+||=++-++...+-+.| ++.|-| ||+|-+|||||=.|-=|| .+ - ....-.+||+.-
T Consensus 210 LIGRE~EleRtiQvLCR-----R~KNNP----l~VGEPGVGKTAI~EGLA~~I~~~~kvPe~Lkn~~IY~LDmG~L---- 276 (774)
T TIGR02639 210 LIGREDELERTIQVLCR-----RKKNNP----LLVGEPGVGKTAIVEGLAQRIAEGQKVPEVLKNAKIYSLDMGTL---- 276 (774)
T ss_pred CCCCHHHHHHHHHHHCC-----CCCCCC----CEECCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECHHHH----
T ss_conf 34566887423332034-----567887----20448886448999999998641564670024783454043456----
Q ss_pred CCCHHCCCCCHHCC-CCCC-CCCCHHHHHCCCE-EEEECCHHH---------CCHHHHHHHHHHHHHHHCCCCCCCEECC
Q ss_conf 53011047800025-6444-3100355515851-777404455---------0289999999987775021779977612
Q gi|254780163|r 548 AVSRLIGAPPGYVG-FGQG-GILADSVDQNPYS-VVLLDEIEK---------SHPDVLNILLQIMDYGILTDQSGKKISF 615 (798)
Q Consensus 548 ~vs~LiGappGYvG-~~eg-g~Lte~vr~~P~s-Vvl~DEiEK---------Ah~~v~~~llqild~G~ltd~~Gr~vdf 615 (798)
|=|+ =|=| |++= =...+-+.+.|.. ||+.|||+= .|=|-=|||=-+|.+|.|.
T Consensus 277 ----LAGT--KYRGDFE~RLK~V~~Ei~~~~~anILFIDEIHTIVGAGATSGGsmDASNLLKPaL~~G~iR--------- 341 (774)
T TIGR02639 277 ----LAGT--KYRGDFEERLKAVVSEIEKEPNANILFIDEIHTIVGAGATSGGSMDASNLLKPALASGKIR--------- 341 (774)
T ss_pred ----HHHC--CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHCCCEE---------
T ss_conf ----4102--4542478999999999852899954664110103317878751552443211253078778---------
Q ss_pred CCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCC--HHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 54299994242145533036898821114889999987288--7881776828962889999999999999999999998
Q gi|254780163|r 616 RNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLS--PEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQ 693 (798)
Q Consensus 616 ~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~--peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~ 693 (798)
| +||.-. ++-|+||- -.+--|+..|= -..-+.++-.+| |+.|..++.
T Consensus 342 --C-------IGsTTy-----------------~EY~~~FeKDrALsRRFQKID-v~EPs~eet~~I----LkGLk~~YE 390 (774)
T TIGR02639 342 --C-------IGSTTY-----------------EEYKNHFEKDRALSRRFQKID-VGEPSIEETVKI----LKGLKEQYE 390 (774)
T ss_pred --E-------ECCCCH-----------------HHHHCHHHCCCCCCCCCCEEC-CCCCCHHHHHHH----HHHHHHHHH
T ss_conf --6-------226524-----------------864111010202165423311-795788899999----986554201
Q ss_pred HCCCEEEECHHHHHHHHHCC
Q ss_conf 66988999889999999718
Q gi|254780163|r 694 EKGISFHFSEEVINWLVSHG 713 (798)
Q Consensus 694 ~~~i~l~~~~~~~~~l~~~~ 713 (798)
+.+ .+.|++++++.-|+.+
T Consensus 391 ~fH-~V~Y~~eal~~Av~LS 409 (774)
T TIGR02639 391 EFH-HVKYSDEALEAAVELS 409 (774)
T ss_pred CCC-CEECCHHHHHHHHHHH
T ss_conf 325-0113869999999998
No 322
>KOG1808 consensus
Probab=97.74 E-value=3.2e-05 Score=56.69 Aligned_cols=88 Identities=23% Similarity=0.258 Sum_probs=40.8
Q ss_pred EECCCCHHHHHHHHHHHHHCCCCEEEEE--HHHHHC------CCCCCHHCC-CCCHHCCCC--CCCCCCHHHHHCCCEEE
Q ss_conf 6143200388999998730477337720--688612------465301104-780002564--44310035551585177
Q gi|254780163|r 512 FSGPTGVGKTEISKQLAFALGVQLLRFD--MSEYME------RHAVSRLIG-APPGYVGFG--QGGILADSVDQNPYSVV 580 (798)
Q Consensus 512 f~GptGvGKTelak~la~~~~~~lir~d--msey~e------~~~vs~LiG-appGYvG~~--egg~Lte~vr~~P~sVv 580 (798)
.+|+||.|||+..-.+|..+...++..+ +.+.+. .+..+-.+| .-+-+-+.- .+|.|+.+-+.- .-.
T Consensus 720 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~ew~dglLi~a~~~G--~~~ 797 (1856)
T KOG1808 720 LVGLTGCGDTTVCQILAEKSGVALRILNAHEHTEAQRPNVLFRENLQHDEIREDKMLKDLFEWSDGLLIGAQGVG--KQF 797 (1856)
T ss_pred HCCCCCCCCHHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHCC--CHH
T ss_conf 015556663245544321045503420122001330565200133025676654664043101376501344336--313
Q ss_pred EECCHHHCCHHHHHHHHHHHH
Q ss_conf 740445502899999999877
Q gi|254780163|r 581 LLDEIEKSHPDVLNILLQIMD 601 (798)
Q Consensus 581 l~DEiEKAh~~v~~~llqild 601 (798)
|.|||.-|.-+|+--+.-+|.
T Consensus 798 l~Dei~la~dsvleRln~~Le 818 (1856)
T KOG1808 798 LVDEISLAEDSVLERLNEVLE 818 (1856)
T ss_pred HHHCCCCCHHHHHHHHHHHHC
T ss_conf 330034512457888777737
No 323
>KOG0651 consensus
Probab=97.71 E-value=0.00048 Score=48.22 Aligned_cols=124 Identities=28% Similarity=0.466 Sum_probs=85.8
Q ss_pred HHCHHHHHHHHHHHH--------HHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCC
Q ss_conf 534589999999998--------775204456578740688614320038899999873047733772068861246530
Q gi|254780163|r 479 VYGQEEAIKKLSSSI--------KIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVS 550 (798)
Q Consensus 479 v~GQ~~ai~~v~~~i--------~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs 550 (798)
|-|--.-+..+-+.| ...+.|++. |.|+. +-||.|.|||-+|+++|-.++.+++..-+|+.-++
T Consensus 134 ~ggl~~qirelre~ielpl~np~lf~rvgIk~---Pkg~l-l~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k---- 205 (388)
T KOG0651 134 VGGLFYQIRELREVIELPLTNPELFLRVGIKP---PKGLL-LYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK---- 205 (388)
T ss_pred HCCHHHHHHHHHHHEEEECCCCHHCCCCCCCC---CCEEE-EECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHH----
T ss_conf 17838888998865574024810023457778---82568-76799986459999999865985477447666330----
Q ss_pred HHCCCCCHHCCCCCCCCCC-----HHHHHCCCEEEEECCHHH-----------CCHHHHHHHHHHHHHHHCCCCCCCEEC
Q ss_conf 1104780002564443100-----355515851777404455-----------028999999998777502177997761
Q gi|254780163|r 551 RLIGAPPGYVGFGQGGILA-----DSVDQNPYSVVLLDEIEK-----------SHPDVLNILLQIMDYGILTDQSGKKIS 614 (798)
Q Consensus 551 ~LiGappGYvG~~egg~Lt-----e~vr~~P~sVvl~DEiEK-----------Ah~~v~~~llqild~G~ltd~~Gr~vd 614 (798)
|+| |.+.|. .|-...| |+++.|||+- |...|+..|..+++.=.=.|..||
T Consensus 206 --------yiG--EsaRlIRemf~yA~~~~p-ciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~r--- 271 (388)
T KOG0651 206 --------YIG--ESARLIRDMFRYAREVIP-CIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHR--- 271 (388)
T ss_pred --------HCC--CHHHHHHHHHHHHHHHCC-EEEEEHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHCCCHHCCC---
T ss_conf --------026--578899999977865275-577510123114577335552059999999999874214012066---
Q ss_pred CCCEEEEEECCCC
Q ss_conf 2542999942421
Q gi|254780163|r 615 FRNVILIMTTNAG 627 (798)
Q Consensus 615 f~n~iii~TsN~G 627 (798)
+-+|||+|=-
T Consensus 272 ---Vk~ImatNrp 281 (388)
T KOG0651 272 ---VKTIMATNRP 281 (388)
T ss_pred ---CCEEEECCCC
T ss_conf ---3179853886
No 324
>PRK06620 hypothetical protein; Validated
Probab=97.70 E-value=0.0026 Score=42.97 Aligned_cols=132 Identities=17% Similarity=0.381 Sum_probs=71.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHC
Q ss_conf 68861432003889999987304773377206886124653011047800025644431003555158517774044550
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKS 588 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKA 588 (798)
+++..||+|.|||.|++..+...+..++ + ..+ +.+... ..+.++++|.||+.
T Consensus 46 ~l~I~Gp~gSGKTHL~~i~~~~~~a~~~--~-~~~------------------------~~~~~~-~~~~~~iiddid~~ 97 (214)
T PRK06620 46 TLLIKGPSSSGKTYLTKIWQNLSNAYII--K-DIF------------------------FNEEIL-EKYNAFIIEDIENW 97 (214)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCEEE--C-HHH------------------------CCHHHH-HHCCCEEEECCCCC
T ss_conf 5999879999889999999998285881--5-121------------------------458788-43793798467757
Q ss_pred CHH-HHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCC--E
Q ss_conf 289-9999999877750217799776125429999424214553303689882111488999998728878817768--2
Q gi|254780163|r 589 HPD-VLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLD--S 665 (798)
Q Consensus 589 h~~-v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid--~ 665 (798)
... .|.+ +..+.+ .++-++|||+.-. ..+. - |.+..|+- .
T Consensus 98 ~e~~lfhl-fN~~~~-------------~~~~llits~~~p-------~~~~----L------------~DL~SRl~~~~ 140 (214)
T PRK06620 98 QEPALLHI-FNIINE-------------KQKYLLLTSSDKS-------RNFT----L------------PDLSSRIKSVL 140 (214)
T ss_pred CHHHHHHH-HHHHHH-------------CCCEEEEEECCCC-------CCCC----C------------CCHHHHHHCCC
T ss_conf 46799999-999971-------------5987999827985-------2245----3------------57899985464
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCC
Q ss_conf 8962889999999999999999999998669889998899999997189
Q gi|254780163|r 666 IIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGY 714 (798)
Q Consensus 666 ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~ 714 (798)
++-..+.+.+.+..++.+.+ ..+++. +++++++||+.+.-
T Consensus 141 ~~~i~~PdD~l~~~ll~k~~-------~~r~i~--i~~~vi~yl~~ri~ 180 (214)
T PRK06620 141 SILLNSPDDELIKILIFKHF-------SISSVT--ISRQIIDFLLVNLP 180 (214)
T ss_pred EEECCCCCHHHHHHHHHHHH-------HHCCCC--CCHHHHHHHHHHHC
T ss_conf 43326989899999999999-------986998--87559999999851
No 325
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.00039 Score=48.90 Aligned_cols=118 Identities=19% Similarity=0.256 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC--C--CCE-EEEEHHHHHCCCCCCHHC--
Q ss_conf 458999999999877520445657874068861432003889999987304--7--733-772068861246530110--
Q gi|254780163|r 481 GQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL--G--VQL-LRFDMSEYMERHAVSRLI-- 553 (798)
Q Consensus 481 GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~--~--~~l-ir~dmsey~e~~~vs~Li-- 553 (798)
-|+..++.+.+++... |---.|||.| |+||+.+|+.+|..+ + ... -.-.|... ++|
T Consensus 6 ~Qp~i~~~l~~~i~~~--------rl~HAyLf~G--~~Gk~~~A~~~A~~l~C~~~~~~~pCg~C~~C-------~~i~~ 68 (290)
T PRK07276 6 KQPKLFQRFQTILEQD--------RLNHAYLFSG--DFASFEMALFLAQSLFCEQKEDVLPCGHCRSC-------RLIEQ 68 (290)
T ss_pred HHHHHHHHHHHHHHCC--------CCCEEEECCC--CCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHH-------HHHHC
T ss_conf 7899999999999849--------9650542169--86879999999999818999998989889999-------99876
Q ss_pred CCCCHHC---------CCCCCCCCCHHHHHCC----CEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEE
Q ss_conf 4780002---------5644431003555158----51777404455028999999998777502177997761254299
Q gi|254780163|r 554 GAPPGYV---------GFGQGGILADSVDQNP----YSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVIL 620 (798)
Q Consensus 554 GappGYv---------G~~egg~Lte~vr~~P----~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~ii 620 (798)
|..|-+. +-|+=-.|.+.....| |-|+++|+.|+.++.-.|.||..|+|-- .||++
T Consensus 69 ~~hpDv~~i~~~~~~I~vd~IR~l~~~~~~~~~~g~~KV~II~~Ad~mt~~AaNaLLK~LEEPp-----------~~t~~ 137 (290)
T PRK07276 69 GDFSDVTVIEPQGQVIKTDTIRELTANFSQSGYEGKRQVFIIKDADKMHVNAANSLLKVIEEPQ-----------SEIYI 137 (290)
T ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHCCHHHHHHHHHHHCCCC-----------CCCEE
T ss_conf 9998713771677757688999999998445613782799977656529999999999703898-----------88379
Q ss_pred EEECCC
Q ss_conf 994242
Q gi|254780163|r 621 IMTTNA 626 (798)
Q Consensus 621 i~TsN~ 626 (798)
|++|+-
T Consensus 138 iLlt~~ 143 (290)
T PRK07276 138 FLLTND 143 (290)
T ss_pred EEEECC
T ss_conf 988799
No 326
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.00033 Score=49.37 Aligned_cols=160 Identities=18% Similarity=0.259 Sum_probs=95.1
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHH-------------HEE--EEEEEEHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 74896676411668999999998548988345-------------201--445540467530634312378999999987
Q gi|254780163|r 227 NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDIL-------------LGA--RIFSLDMGNLIAGTRYRGDFEERIKKIVKE 291 (798)
Q Consensus 227 n~~lvG~~gvGktaive~la~~i~~~~vp~~l-------------~~~--~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~ 291 (798)
--++.|++|+||++++..+|+.+.-.+ |..- .|. -++.++.. -|... | - +-++.+++.
T Consensus 25 A~L~~G~~G~Gk~~la~~~a~~llC~~-~~~~~~Cg~C~sC~l~~~g~HPD~~~i~~~---~~k~I-~-v-d~IR~l~~~ 97 (324)
T PRK06871 25 ALLFKADSGLGTEQLIRALAQWLMCQA-PGDEQPCGQCHSCHLFQAGNHPDFHILEPI---DGKDI-G-V-DQVREINEK 97 (324)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHCCCCCCEEEEECC---CCCCC-C-H-HHHHHHHHH
T ss_conf 787689999789999999999982899-999998888989999973899987998467---88878-8-9-999999999
Q ss_pred HCC----CCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEEC
Q ss_conf 203----8983999736166301554443447778888766302--6603887304899999852011143200144306
Q gi|254780163|r 292 IES----YANAILYIDEIHTLVGAGSASGISVDASNLLKPALSS--GAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVS 365 (798)
Q Consensus 292 ~~~----~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~r--g~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ 365 (798)
+.. .+.-|.+||+.|.+ +..|+|-|--.|.- +..-+|=.|+.. .+ --+.+-.|-|.+.+.
T Consensus 98 ~~~~~~~g~~KV~iI~~ae~m---------~~~AaNALLKtLEEPp~~~~fiL~t~~~--~~---ll~TI~SRCq~~~~~ 163 (324)
T PRK06871 98 VSQFAQQGGNKVVYIQGAERL---------TEAAANALLKTLEEPRPNTYFLLQADLS--AS---LLATIYSRCQTWLIH 163 (324)
T ss_pred HHHCCCCCCCEEEEECCHHHH---------HHHHHHHHHHHHCCCCCCEEEEEEECCC--CC---CCCHHHHCCCCEECC
T ss_conf 864622059669997588885---------7999999999833898783899987870--10---324086266120089
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 878689999998612766541035121117899999865420155564679889986
Q gi|254780163|r 366 EPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDE 422 (798)
Q Consensus 366 ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDe 422 (798)
.|+.+++..-|..-. ...++.+..+..++ .--|.+|..++.+
T Consensus 164 ~p~~~~~~~wL~~~~---------~~~~~~~~~al~~~------~g~pl~A~~~~~~ 205 (324)
T PRK06871 164 VPEEQIALDWLQAQS---------SGEIQEIQTALRIN------YGRPLLALTFLEQ 205 (324)
T ss_pred CCCHHHHHHHHHHHC---------CCCHHHHHHHHHHC------CCCHHHHHHHHCC
T ss_conf 949999999999746---------88729999999976------9987999998687
No 327
>KOG3595 consensus
Probab=97.69 E-value=0.0025 Score=43.01 Aligned_cols=165 Identities=19% Similarity=0.279 Sum_probs=95.3
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE------HHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCC
Q ss_conf 787406886143200388999998730477337720------68861246530110478000256444310035551585
Q gi|254780163|r 504 NKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFD------MSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPY 577 (798)
Q Consensus 504 ~rP~g~flf~GptGvGKTelak~la~~~~~~lir~d------msey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~ 577 (798)
..|-|..|..|-.|.||+-+.+..+|..+..+..+. ..+|.+.-. -.+..+.-++.+
T Consensus 462 ~~~~g~~llvgv~g~gkqsl~r~~~~~~~~~~fq~~~~~~y~~~~~~~dl~-----------------~~~r~~g~~~~~ 524 (1395)
T KOG3595 462 RQPRGHALLVGVGGSGKQSLTRLAAFINGLSVFQIEITRSYNIEDFREDLK-----------------AILRKAGLKNKE 524 (1395)
T ss_pred HCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHH-----------------HHHHHHCCCCCC
T ss_conf 189885688740676753299998611576605742001141766999999-----------------999996436787
Q ss_pred EEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCE-EC----------CCCEEEEEECCCCHHHHH------HCCCCCCC
Q ss_conf 17774044550289999999987775021779977-61----------254299994242145533------03689882
Q gi|254780163|r 578 SVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKK-IS----------FRNVILIMTTNAGALEMS------KARIGFGS 640 (798)
Q Consensus 578 sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~-vd----------f~n~iii~TsN~G~~~~~------~~~~g~~~ 640 (798)
.+++|++.+.....++..+=-+|..|-..+--++. .+ =.++..+++|........ ....++..
T Consensus 525 ~~f~~~~~~i~~e~fle~ln~ll~~gevp~lf~~de~~~~~~~~~~~~~~~~~~~~~s~e~~~~~f~~~~~~~l~~vl~~ 604 (1395)
T KOG3595 525 TVFILTDSQIKDESFLEDLNNLLASGEVPNLFTGDELDEIKMELAGEMGEEAKLILDSRENLYLFFIFRVRRNLHVVLSV 604 (1395)
T ss_pred CEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 16985207888989999989998578875543567774378876434554303356508999999999999846421211
Q ss_pred CCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 111488999998728878817768289628899999999999999999
Q gi|254780163|r 641 SRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKL 688 (798)
Q Consensus 641 ~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l 688 (798)
....+.. .++..-.|-.+||. .|..|..-..+.+..+...++...
T Consensus 605 ~~~g~~~--~~r~~~~pal~~~~-~i~w~~~w~~~al~~v~~~~l~~~ 649 (1395)
T KOG3595 605 SPVGDAF--RLRARKFPALVNRC-TIDWFDSWPTEALLSVAEEFLASQ 649 (1395)
T ss_pred CCHHHHH--HHHHHCCHHHHCCC-EEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 8543689--98875071332373-540420089999999999887754
No 328
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.69 E-value=6.1e-05 Score=54.66 Aligned_cols=48 Identities=31% Similarity=0.495 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCC---EEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 22217899999999862267787---4896676411668999999998548
Q gi|254780163|r 205 ILVGRHEEINRTIQILCRRSKNN---PLYVGDPGVGKTAIAEGFAKQIVDG 252 (798)
Q Consensus 205 PVIGRd~EI~riiqIL~RR~KNn---~~lvG~~gvGktaive~la~~i~~~ 252 (798)
|++||+.|+.++.+.+.|..+.. .+++|++|.|||+||..+..+|...
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~ 51 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ 51 (849)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 978707689999999999837771699987558774899999999987424
No 329
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.67 E-value=0.0017 Score=44.31 Aligned_cols=186 Identities=14% Similarity=0.156 Sum_probs=110.1
Q ss_pred HHHHHHCCHHHHHHHCHHHHHHHHHHHHHH--HHCCCCCCCCCC-----------CEEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 334210000246653458999999999877--520445657874-----------0688614320038899999873047
Q gi|254780163|r 466 SVLSNLEKNLGTVVYGQEEAIKKLSSSIKI--ARAGLSDPNKPI-----------GCYVFSGPTGVGKTEISKQLAFALG 532 (798)
Q Consensus 466 ~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~--~~~gl~~~~rP~-----------g~flf~GptGvGKTelak~la~~~~ 532 (798)
.....|...+.-.|+|.+..-..+.-.+.- .+. ......|- =..|++|-+|++|+.|-+-......
T Consensus 440 diY~~L~~SiAPSI~~~~dvKkgillqLFGg~~k~-~~~~~~~~~~~~~~~~RgdIniLl~GDPgtaKSQlL~yv~~iaP 518 (916)
T PTZ00111 440 MIYRILLDSFAPSIKARNNVKIGLLCQLFSCNANS-SDNNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSP 518 (916)
T ss_pred CHHHHHHHHHCCHHCCCHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 69999987308621152269999999984887545-67787765444444434540599957996018999999997287
Q ss_pred CCEEEEEHHHHHCCCCCCHHCCCCCHHCC--CCCCCCCC-H--HHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCC
Q ss_conf 73377206886124653011047800025--64443100-3--5551585177740445502899999999877750217
Q gi|254780163|r 533 VQLLRFDMSEYMERHAVSRLIGAPPGYVG--FGQGGILA-D--SVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTD 607 (798)
Q Consensus 533 ~~lir~dmsey~e~~~vs~LiGappGYvG--~~egg~Lt-e--~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd 607 (798)
...-.-- -..|...|.. ||- --+.|+++ | |+--.-..|...||++|...+-...|..+|+..
T Consensus 519 RgvytsG-----kgsSavGLTA----~v~~~d~~tg~~~LEaGALVLaD~GvccIDEFDKM~~~~rs~lhEaMEQQ---- 585 (916)
T PTZ00111 519 RSIYTSG-----KSSSSVGLTA----SIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQ---- 585 (916)
T ss_pred CEEEECC-----CCCCCCCCEE----EEEECCCCCCCEEEECCCEEECCCCEEEEEHHHCCCHHHHHHHHHHHHHH----
T ss_conf 4267459-----8654226468----99832688786898548089727987996222036856788999988663----
Q ss_pred CCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCC
Q ss_conf 7997761254299994242145533036898821114889999987288788177682896288
Q gi|254780163|r 608 QSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFP 671 (798)
Q Consensus 608 ~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~ 671 (798)
+|+...+=|+.|=|+-...++.+..-++.......+.+-+ .++|-++.|+|-|.....
T Consensus 586 ----tvSIAKAGI~~tLnARtSvLAaANP~~gry~~~~~v~enI--~lpp~LLSRFDLIfl~lD 643 (916)
T PTZ00111 586 ----TVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENI--NISPSLFTRFDLIYLVLD 643 (916)
T ss_pred ----HHHHHHCCEEEEECHHHHHHHHCCCCCCCCCCCCCHHHHC--CCCCHHHHHHHEEEEEEC
T ss_conf ----1235323504541203456553286556578786767645--799403312204677505
No 330
>PRK13946 shikimate kinase; Provisional
Probab=97.66 E-value=0.0069 Score=39.88 Aligned_cols=139 Identities=13% Similarity=0.261 Sum_probs=70.6
Q ss_pred HHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHH-HHHCCCCC------CCH--HHHHHHHH
Q ss_conf 9862267787489667641166899999999854898834520144554046-75306343------123--78999999
Q gi|254780163|r 218 QILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMG-NLIAGTRY------RGD--FEERIKKI 288 (798)
Q Consensus 218 qIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~-~l~ag~~~------rg~--fe~r~~~~ 288 (798)
+|-.+-.|+|.+|||-+|+|||+|-.-||+++-- .++.+|-- --.+|++. .|| |-+.=..+
T Consensus 13 ~~~~~l~kknIvLIG~mGsGKStvGk~LA~~L~~----------~fiD~D~~IE~~~g~sI~eIF~~~GE~~FR~~E~~~ 82 (195)
T PRK13946 13 QIRAALGKRTVVLVGLMGAGKSTVGRRLATMLGL----------PFLDADTEIERAARMTIPEIFATYGEPEFRDLERRV 82 (195)
T ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCC----------CEEECHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHH
T ss_conf 9999858995899899999889999999999797----------989885999998099899999986979999989999
Q ss_pred HHHHCCCCCEEEEECCHHHHHCCCCCCCCC-CCHHHHHHHHH-CCCCEEEEEECCHHH-HHHHHHCCHHHHHHCEEEEEC
Q ss_conf 987203898399973616630155444344-77788887663-026603887304899-999852011143200144306
Q gi|254780163|r 289 VKEIESYANAILYIDEIHTLVGAGSASGIS-VDASNLLKPAL-SSGAVRCIGSTTYSE-YRQFFEKDKALVRRFQKIDVS 365 (798)
Q Consensus 289 ~~~~~~~~~~ilfideih~ligag~~~g~~-~d~an~lkP~L-~rg~~~~IgatT~~e-y~~~~e~d~al~rrF~~i~v~ 365 (798)
+.++...++.| | +++||. +.-.|+ + .| .+|-+=.+ -+.++. |++ +..+. .| |+ +.
T Consensus 83 l~~l~~~~~~V---------I---stGGG~v~~~~n~-~-~L~~~g~vI~L-~~~~e~l~~R-l~~~~--~R---PL-l~ 140 (195)
T PRK13946 83 IARLLKGGPLV---------L---ATGGGAFMNEETR-A-AIREKGISVWL-KADLDVLWER-VSRRD--TR---PL-LR 140 (195)
T ss_pred HHHHHCCCCEE---------E---ECCCCCCCCHHHH-H-HHHHCCEEEEE-ECCHHHHHHH-HCCCC--CC---CC-CC
T ss_conf 99986489879---------9---7587423689999-9-99957968998-4999999999-72899--99---98-99
Q ss_pred CCCHHHHHH-HHHHHHHHHHHHCC
Q ss_conf 878689999-99861276654103
Q gi|254780163|r 366 EPSIEDAIE-IVKGIKPYFEEHHQ 388 (798)
Q Consensus 366 ep~~~~~~~-iL~~~~~~ye~~h~ 388 (798)
..+..+.+. ++..-.+.|+..|-
T Consensus 141 ~~~~~~~l~~l~~~R~~lY~~Ad~ 164 (195)
T PRK13946 141 TADPKETLARLMEERYPVYAQADL 164 (195)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCE
T ss_conf 988799999999999999997898
No 331
>KOG0742 consensus
Probab=97.65 E-value=0.0013 Score=45.23 Aligned_cols=161 Identities=23% Similarity=0.339 Sum_probs=93.2
Q ss_pred HHCCC--CHHHHHH---HHHHHHHHHHHHCCCCC------CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEE-EE
Q ss_conf 75486--1122217---89999999986226778------7489667641166899999999854898834520144-55
Q gi|254780163|r 198 VKKGK--VDILVGR---HEEINRTIQILCRRSKN------NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARI-FS 265 (798)
Q Consensus 198 AreGK--LDPVIGR---d~EI~riiqIL~RR~KN------n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i-~~ 265 (798)
.++|| |+-||=+ +.-|+++- +-.+-+|. |.++-|+||.|||-.+..||++- | | ++.+ -.
T Consensus 347 s~~gk~pl~~ViL~psLe~Rie~lA-~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S--G-----l-DYA~mTG 417 (630)
T KOG0742 347 SSRGKDPLEGVILHPSLEKRIEDLA-IATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS--G-----L-DYAIMTG 417 (630)
T ss_pred HHCCCCCCCCEECCHHHHHHHHHHH-HHHCCCCCCCCHHHHEEEECCCCCCHHHHHHHHHHHC--C-----C-CEEHHCC
T ss_conf 6357777678412777999999998-8740430024304400324799986049999998852--8-----7-4100137
Q ss_pred EEHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-CEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHC-----CCCEEEEEE
Q ss_conf 4046753063431237899999998720389-8399973616630155444344777888876630-----266038873
Q gi|254780163|r 266 LDMGNLIAGTRYRGDFEERIKKIVKEIESYA-NAILYIDEIHTLVGAGSASGISVDASNLLKPALS-----SGAVRCIGS 339 (798)
Q Consensus 266 ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~-~~ilfideih~ligag~~~g~~~d~an~lkP~L~-----rg~~~~Iga 339 (798)
=|++-| |+ |---.+..|++..+++. ..+|||||....+---+...-|-|--.-|--.|- +.+|-.+-|
T Consensus 418 GDVAPl--G~----qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlA 491 (630)
T KOG0742 418 GDVAPL--GA----QAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLA 491 (630)
T ss_pred CCCCCC--HH----HHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 875552--17----889999998788751566449986116789987520102588999998898762565542689960
Q ss_pred CCHHHHHHHHHCCHHHHHHC-EEEEECCCCHHHHHHHHHH
Q ss_conf 04899999852011143200-1443068786899999986
Q gi|254780163|r 340 TTYSEYRQFFEKDKALVRRF-QKIDVSEPSIEDAIEIVKG 378 (798)
Q Consensus 340 tT~~ey~~~~e~d~al~rrF-~~i~v~ep~~~~~~~iL~~ 378 (798)
|..-+ .-|.|.+.|| +.|..+=|-.|+-.++|+-
T Consensus 492 tNrpg-----dlDsAV~DRide~veFpLPGeEERfkll~l 526 (630)
T KOG0742 492 TNRPG-----DLDSAVNDRIDEVVEFPLPGEEERFKLLNL 526 (630)
T ss_pred CCCCC-----CHHHHHHHHHHHHEECCCCCHHHHHHHHHH
T ss_conf 58832-----101678765554130689977899999999
No 332
>PRK06921 hypothetical protein; Provisional
Probab=97.65 E-value=0.00026 Score=50.15 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=12.0
Q ss_pred CEEEEECCCCHHHHHHHHHHH
Q ss_conf 068861432003889999987
Q gi|254780163|r 508 GCYVFSGPTGVGKTEISKQLA 528 (798)
Q Consensus 508 g~flf~GptGvGKTelak~la 528 (798)
.+++|.|++|+|||.||-++|
T Consensus 117 ~~l~f~G~~G~GKThLa~aIa 137 (265)
T PRK06921 117 NSIALLGQPGSGKTHLLTAAA 137 (265)
T ss_pred CCEEEECCCCCCHHHHHHHHH
T ss_conf 627997289898899999999
No 333
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.64 E-value=0.00048 Score=48.20 Aligned_cols=148 Identities=22% Similarity=0.377 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHHHHHHHC--CCCCCEEEECCCCCHHHHHHHHHHHHHH----------CCCCCHHHHEEEEEEEEHHH
Q ss_conf 11222178999999998622--6778748966764116689999999985----------48988345201445540467
Q gi|254780163|r 203 VDILVGRHEEINRTIQILCR--RSKNNPLYVGDPGVGKTAIAEGFAKQIV----------DGMVPDILLGARIFSLDMGN 270 (798)
Q Consensus 203 LDPVIGRd~EI~riiqIL~R--R~KNn~~lvG~~gvGktaive~la~~i~----------~~~vp~~l~~~~i~~ld~~~ 270 (798)
-.++||+..-++++.+.+.| .+..++++.||.|+||--++..+-+.=. .+.+|+.|-...+|.-.-|+
T Consensus 140 ~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGA 219 (464)
T COG2204 140 GGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGA 219 (464)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCC
T ss_conf 67752069999999999999847799789977898758999999986074458992563346489888777761456567
Q ss_pred HHC-CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCC-------------EEE
Q ss_conf 530-634312378999999987203898399973616630155444344777888876630266-------------038
Q gi|254780163|r 271 LIA-GTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGA-------------VRC 336 (798)
Q Consensus 271 l~a-g~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~-------------~~~ 336 (798)
+-- .++-.|-||+ +..=.||+|||..+ ++++-.=|-=+|.-|+ +|+
T Consensus 220 FTGA~~~r~G~fE~-----------A~GGTLfLDEI~~m---------pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRi 279 (464)
T COG2204 220 FTGAITRRIGRFEQ-----------ANGGTLFLDEIGEM---------PLELQVKLLRVLQEREFERVGGNKPIKVDVRI 279 (464)
T ss_pred CCCCCCCCCCCEEE-----------CCCCEEEEECCCCC---------CHHHHHHHHHHHHCCEEEECCCCCEECEEEEE
T ss_conf 67764345761577-----------37965873231109---------99999999999870706735888600001699
Q ss_pred EEECCHHHHHHHHHCCH---HHHHHCEEEEECCCCHHH
Q ss_conf 87304899999852011---143200144306878689
Q gi|254780163|r 337 IGSTTYSEYRQFFEKDK---ALVRRFQKIDVSEPSIED 371 (798)
Q Consensus 337 IgatT~~ey~~~~e~d~---al~rrF~~i~v~ep~~~~ 371 (798)
|+||..+ -...++.-. -|--|+.++.+.=|.--+
T Consensus 280 IaaT~~d-L~~~v~~G~FReDLyyRLnV~~i~iPpLRE 316 (464)
T COG2204 280 IAATNRD-LEEEVAAGRFREDLYYRLNVVPLRLPPLRE 316 (464)
T ss_pred EEECCCC-HHHHHHCCCCHHHHHHHHCCCEECCCCCCC
T ss_conf 9605778-999988197378888652331104876223
No 334
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=97.62 E-value=0.0079 Score=39.48 Aligned_cols=140 Identities=19% Similarity=0.226 Sum_probs=74.1
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHH-----------HHHHHHH-CCC
Q ss_conf 4896676411668999999998548988345201445540467530634312378999-----------9999872-038
Q gi|254780163|r 228 PLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERI-----------KKIVKEI-ESY 295 (798)
Q Consensus 228 ~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~-----------~~~~~~~-~~~ 295 (798)
+++.|+||+|||+++..+|..+++|+.+... ..++-+.+..+-- .+.. .+++-+ ..+...+ ...
T Consensus 3 i~i~G~aG~GKTtll~kl~~~wa~g~~~~~~--~~vf~~~~r~~~~-~~~~-sl~~ll~~~~~~~~~~~~~~~~~~~~~~ 78 (165)
T pfam05729 3 VILQGEAGSGKTTLLQKLALLWAQGKLPQDF--DFVFFLPCRELSR-SGEA-SLADLLFSQWPEPAAPVSEVWAVILELP 78 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCCCC--CEEEEEEHHHHCC-CCCC-CHHHHHHHHCCCCCCCHHHHHHHHHHCC
T ss_conf 9998279898999999999999869843697--2899999567077-7668-9999999876774576378999998397
Q ss_pred CCEEEEECCHHHHHCCCCCCCCCCC----HHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHH
Q ss_conf 9839997361663015544434477----788887663026603887304899999852011143200144306878689
Q gi|254780163|r 296 ANAILYIDEIHTLVGAGSASGISVD----ASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIED 371 (798)
Q Consensus 296 ~~~ilfideih~ligag~~~g~~~d----~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~ 371 (798)
+++.+.+|.+.-+-..-........ .+|+|+..+-.+ -+++-+|.|..|++ .+..-+.|+.+.|..-|.++
T Consensus 79 ~k~L~ilDGlDE~~~~~~~~~~~~~~~~~l~~ll~~~~lp~-~~vliTsRp~~~~~----l~~~~~~~~~~ei~GFs~~~ 153 (165)
T pfam05729 79 ERVLLILDGLDELASDLGQLDGPLPVLTLLSSLLRKKLLPG-ASLLLTSRPDALRD----LRRGLEEPRYLEVLGFSEED 153 (165)
T ss_pred CCEEEEECCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCC-CEEEEEECCCHHHH----HHHHCCCCCEEEECCCCHHH
T ss_conf 72899964845514443564445779999999984152788-64999968037988----57764887189988999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780163|r 372 AIEIV 376 (798)
Q Consensus 372 ~~~iL 376 (798)
.-..+
T Consensus 154 ~~~yi 158 (165)
T pfam05729 154 RKQYV 158 (165)
T ss_pred HHHHH
T ss_conf 99999
No 335
>pfam02861 Clp_N Clp amino terminal domain. This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site.
Probab=97.62 E-value=0.00016 Score=51.60 Aligned_cols=50 Identities=22% Similarity=0.261 Sum_probs=45.9
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999980998125999878787377429999999849998999999983
Q gi|254780163|r 93 AVLHVQSTGRGIVTGANILVALFSEPDSHATYFLQEQEMTLYDAVNFISH 142 (798)
Q Consensus 93 A~~~A~~~G~~~I~~eHLLLALL~e~ds~a~~iL~~~gis~~~v~~~i~~ 142 (798)
|...|+.+|+++|+++|||+|++.++++.+..+|...|++...+...+..
T Consensus 1 A~~~A~~~~~~~i~~EHlLlall~~~~~~~~~il~~~g~~~~~l~~~i~~ 50 (53)
T pfam02861 1 AQELAKELGHQYIGTEHLLLALLEEDDGIAARLLKKAGVDLDALREAIEK 50 (53)
T ss_pred CHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 98889786998534999999998658858999999959899999999998
No 336
>KOG1051 consensus
Probab=97.61 E-value=0.0011 Score=45.69 Aligned_cols=66 Identities=15% Similarity=0.154 Sum_probs=55.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH--HHCHHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 73438999999999999998289951199999998--2074689999985999899999999996413
Q gi|254780163|r 2 SFFSENLEKVLHQALVLANERNHEYATLEHLLLAL--IDDSDAAIVMLSCNVDLKVLKNNLLNYIDND 67 (798)
Q Consensus 2 ~mfS~~a~~vL~~A~~lAk~~~H~~Vt~EHLLLaL--L~d~~~~~iL~~~giD~~~Lk~~Le~~L~~~ 67 (798)
+.++...++++..++..+...++++|.+||+.+.+ ++++.+..++.++|.+...++..++....+.
T Consensus 88 n~l~aalkr~qa~qrr~~~~~~~~~vkvE~~qli~silDdp~vsrv~rEag~~s~~vK~~ve~~~g~~ 155 (898)
T KOG1051 88 NALMAALKRAQAHQRRGCEEQQQQAVKVELEQLILSILDDPSVSRVMREAGFSSSAVKSAVEQPVGQF 155 (898)
T ss_pred HHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHEECCCHHHHHHHHHHCCCHHHHHHHHHHCCCCC
T ss_conf 37699999889998734624234134476674631130570799999995589589999886302445
No 337
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.61 E-value=0.00021 Score=50.79 Aligned_cols=176 Identities=19% Similarity=0.256 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHC--CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHC--------C
Q ss_conf 222178999999998622--677874896676411668999999998548988345201445540467530--------6
Q gi|254780163|r 205 ILVGRHEEINRTIQILCR--RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIA--------G 274 (798)
Q Consensus 205 PVIGRd~EI~riiqIL~R--R~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a--------g 274 (798)
.+||+...++++.+.+.| ++..++++.||+|+||..++..+-..=. -++..++.+|.+++-. |
T Consensus 140 ~liG~S~am~~v~~~i~~~A~s~~pVLI~GE~GTGK~~~Ar~IH~~S~-------r~~~pfv~vnC~~l~~~l~eseLFG 212 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSA-------RSEKPLVTLNCAALNESLLESELFG 212 (441)
T ss_pred CCEECCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCC-------CCCCCCEEEECCCCCHHHHHHHHCC
T ss_conf 866689999999999999848899489989998109999999996578-------7789807987898984555898617
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCC-------------CEEEEEECC
Q ss_conf 3431237899999998720389839997361663015544434477788887663026-------------603887304
Q gi|254780163|r 275 TRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSG-------------AVRCIGSTT 341 (798)
Q Consensus 275 ~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg-------------~~~~IgatT 341 (798)
. -+|.|-.--..-...+..+.+=-||+|||+.+ +.+.-.-|--+|..+ ++|+|++|+
T Consensus 213 ~-~~gaftga~~~~~g~~~~A~gGTLfLdeI~~l---------~~~~Q~kLl~~l~~~~~~~~g~~~~~~~d~RiIaat~ 282 (441)
T PRK10365 213 H-EKGAFTGADKRREGRFVEADGGTLFLDEIGDI---------SPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATH 282 (441)
T ss_pred C-CCCCCCCCCCCCCCCEEECCCCEECCCCCCCC---------CHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEECCC
T ss_conf 7-55687896534689877889982550231529---------9999999998777521000588734413637998378
Q ss_pred HHHHHHHHHCC---HHHHHHCEEEEECCCCHHHHH----HHHHHHHHHHHHHCCC---EECCHHHHH
Q ss_conf 89999985201---114320014430687868999----9998612766541035---121117899
Q gi|254780163|r 342 YSEYRQFFEKD---KALVRRFQKIDVSEPSIEDAI----EIVKGIKPYFEEHHQL---RYSKEAIRA 398 (798)
Q Consensus 342 ~~ey~~~~e~d---~al~rrF~~i~v~ep~~~~~~----~iL~~~~~~ye~~h~v---~~~~~al~~ 398 (798)
.+= .+.++.. ..|--|+..+.|.=|.-.+-. .+.+..-.+|-..++. .++++|+..
T Consensus 283 ~~l-~~~v~~g~Fr~dLy~rL~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~ 348 (441)
T PRK10365 283 RDL-AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDL 348 (441)
T ss_pred CCH-HHHHHCCCCHHHHHHHHCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 899-999881982589998860111378260006200999999999999998499988889999999
No 338
>PRK08116 hypothetical protein; Validated
Probab=97.60 E-value=0.0023 Score=43.32 Aligned_cols=128 Identities=19% Similarity=0.345 Sum_probs=72.7
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCC--CCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 7489667641166899999999854898834520144554046753063--43123789999999872038983999736
Q gi|254780163|r 227 NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGT--RYRGDFEERIKKIVKEIESYANAILYIDE 304 (798)
Q Consensus 227 n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~--~~rg~fe~r~~~~~~~~~~~~~~ilfide 304 (798)
.-+|.|+||+|||-++-.+|..+.+. ++.++-.+...|+.-- .|.....+.-..+++.+.+. -+|.|||
T Consensus 110 GLll~G~~GtGKThLa~aIa~~l~~~-------g~~V~~~~~~~ll~~lk~~~~~~~~~~~~e~l~~l~~~--dLLIiDD 180 (262)
T PRK08116 110 GLLLWGSPGNGKTYLAAAIANELIEK-------GVPVVFVNVPELLNRIKSTYNSEGKEDENEIIRALDNA--DLLILDD 180 (262)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-------CCEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC--CEEEEEH
T ss_conf 18998989998999999999999987-------99399988999999999998635610199999986129--9899832
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHC---CCCEEEEEEC--CHHHHHHHHHCCHHHHHH---CEEEEECCCCHHH
Q ss_conf 16630155444344777888876630---2660388730--489999985201114320---0144306878689
Q gi|254780163|r 305 IHTLVGAGSASGISVDASNLLKPALS---SGAVRCIGST--TYSEYRQFFEKDKALVRR---FQKIDVSEPSIED 371 (798)
Q Consensus 305 ih~ligag~~~g~~~d~an~lkP~L~---rg~~~~Igat--T~~ey~~~~e~d~al~rr---F~~i~v~ep~~~~ 371 (798)
+ |+. .++.. ....|-..+. +....+|-+| +++|..+.+. ++.+.|- ..+|.+.-+|.-.
T Consensus 181 l----G~e--~~t~w-~~e~lf~IIn~Ry~~~kptIiTTNl~~~eL~~~~~-~Ri~sRl~e~~~~v~~~G~d~R~ 247 (262)
T PRK08116 181 L----GAE--KDTEW-VREKLYNIIDSRYRKGLPTIFTTNLSLEELKNQYG-KRTYSRILEMCTPVKNEGKSYRR 247 (262)
T ss_pred H----CCC--CCCHH-HHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH-HHHHHHHHHCCEEEEEECCCHHH
T ss_conf 2----145--69878-99999999999997699989987999999999863-79999998677899851778879
No 339
>TIGR00678 holB DNA polymerase III, delta' subunit; InterPro: IPR004622 DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multi-chain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerisation to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This domain is the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tightly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classified as delta'. The noise cut-off is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication.
Probab=97.60 E-value=0.00021 Score=50.85 Aligned_cols=143 Identities=25% Similarity=0.365 Sum_probs=88.2
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEEHHHHHC-CCCCCH-HCCCCCHHCCCC----CCC----------
Q ss_conf 7874068861432003889999987304-77337720688612-465301-104780002564----443----------
Q gi|254780163|r 504 NKPIGCYVFSGPTGVGKTEISKQLAFAL-GVQLLRFDMSEYME-RHAVSR-LIGAPPGYVGFG----QGG---------- 566 (798)
Q Consensus 504 ~rP~g~flf~GptGvGKTelak~la~~~-~~~lir~dmsey~e-~~~vs~-LiGappGYvG~~----egg---------- 566 (798)
+|---.|||.||.|+||..+|..+|..+ ... -.-.+... -++.-+ .-|+=|.|.=.+ .++
T Consensus 11 ~r~~HA~LF~G~~G~Gk~~~A~~~A~~l~C~~---~~~~~~Cg~C~~C~~~~~G~HPD~~~~~P~~~~~~~~~de~~~~~ 87 (216)
T TIGR00678 11 GRLAHAYLFTGPEGVGKELLALALAKALLCEP---RGGGEPCGECHSCRLIEAGNHPDLHRLEPEGQSKSLTADEAAEGE 87 (216)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHH
T ss_conf 67886125444888748999999999980778---577888885888999870799823787423477777764589762
Q ss_pred -----------CCCHHHHH-----------CCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEEC
Q ss_conf -----------10035551-----------58517774044550289999999987775021779977612542999942
Q gi|254780163|r 567 -----------ILADSVDQ-----------NPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTT 624 (798)
Q Consensus 567 -----------~Lte~vr~-----------~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~Ts 624 (798)
.-++.||. .+|-||++|..|+-++.==|.||..|+|=- .+|++||.|
T Consensus 88 ~g~a~~~~~~~Ik~dq~R~l~~~~~~~~~~~~~rVviI~~Ae~mn~~AANALLKtLEEPp-----------~~t~fiL~~ 156 (216)
T TIGR00678 88 EGSAKRRALPQIKVDQVRELVEFLSLTPQESGRRVVIIEDAERMNEAAANALLKTLEEPP-----------PNTLFILIT 156 (216)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHEECCC-----------CCEEEEEEC
T ss_conf 564211367878727899999998606421475179976732325898986510101279-----------870798850
Q ss_pred CCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 421455330368988211148899999872887881776828962889999999999999
Q gi|254780163|r 625 NAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKF 684 (798)
Q Consensus 625 N~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~ 684 (798)
+-- +-..+.+.|+ .|. .++.|.|++.+.+.+++..+
T Consensus 157 ~~~---------------DP~~lLpTI~--------SRC-q~~~f~~l~~~~~~~~L~~~ 192 (216)
T TIGR00678 157 HSP---------------DPERLLPTIR--------SRC-QVLPFPPLSEEALLQWLIEQ 192 (216)
T ss_pred CCC---------------CHHHHCCCCC--------CCE-EEEEECCCCHHHHHHHHHHC
T ss_conf 888---------------8433221110--------320-15862599889999999970
No 340
>KOG1970 consensus
Probab=97.59 E-value=0.0029 Score=42.63 Aligned_cols=122 Identities=18% Similarity=0.208 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHCC---CCCCEEEE-CCCCCHHHHHHHHHHHHHH----CC------CCCHHHHEEEEEEEEHHHHHCCCC
Q ss_conf 9999999986226---77874896-6764116689999999985----48------988345201445540467530634
Q gi|254780163|r 211 EEINRTIQILCRR---SKNNPLYV-GDPGVGKTAIAEGFAKQIV----DG------MVPDILLGARIFSLDMGNLIAGTR 276 (798)
Q Consensus 211 ~EI~riiqIL~RR---~KNn~~lv-G~~gvGktaive~la~~i~----~~------~vp~~l~~~~i~~ld~~~l~ag~~ 276 (798)
.||++-++.+.-. -+++.+|+ |++|+|||+.|+-|+.-.. +. ..|+.+.+...+.- -.
T Consensus 92 ~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~--------~~ 163 (634)
T KOG1970 92 SEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLM--------FP 163 (634)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCHHCC--------CC
T ss_conf 9999999999974536676079985798887131999999864802123047766566555455440013--------30
Q ss_pred CC---CHHHH---HH-H-HHHHHHC---CCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHH
Q ss_conf 31---23789---99-9-9998720---389839997361663015544434477788887663026603887304899
Q gi|254780163|r 277 YR---GDFEE---RI-K-KIVKEIE---SYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSE 344 (798)
Q Consensus 277 ~r---g~fe~---r~-~-~~~~~~~---~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~IgatT~~e 344 (798)
|- -+||. |. | +.+--.. ...+.+|+|||+-...+-- ..--.-|+|.-+.++|.+-+|-.-|..+
T Consensus 164 ~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d----~~~~f~evL~~y~s~g~~PlIf~iTd~~ 238 (634)
T KOG1970 164 YQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD----DSETFREVLRLYVSIGRCPLIFIITDSL 238 (634)
T ss_pred HHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCEEEEEECCCHHHHHH----HHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 36678999989999876231653133334675079850261444003----6999999999998457776799986353
No 341
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.59 E-value=0.00019 Score=51.19 Aligned_cols=74 Identities=31% Similarity=0.509 Sum_probs=43.3
Q ss_pred CEEEEECCCCHHHHHHHHHHH--HHC-----CCCEEEEEH---HHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHH-CC
Q ss_conf 068861432003889999987--304-----773377206---8861246530110478000256444310035551-58
Q gi|254780163|r 508 GCYVFSGPTGVGKTEISKQLA--FAL-----GVQLLRFDM---SEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQ-NP 576 (798)
Q Consensus 508 g~flf~GptGvGKTelak~la--~~~-----~~~lir~dm---sey~e~~~vs~LiGappGYvG~~egg~Lte~vr~-~P 576 (798)
+++.|+||||||||-++-.|| |-+ ...||.+|- +-...=.+.++++|-|= ||=++ ...|.+++.+ ..
T Consensus 195 ~vi~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyRigA~eQLk~ya~il~vp~-~vv~~-~~~l~~~l~~~~~ 272 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYRIGAVEQLKTYAKILGVPV-KVARD-PKELAKALERLRD 272 (282)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCEE-EEECC-HHHHHHHHHHCCC
T ss_conf 279997788875788999999999997389967999807776789999999999959748-99399-9999999986579
Q ss_pred CEEEEEC
Q ss_conf 5177740
Q gi|254780163|r 577 YSVVLLD 583 (798)
Q Consensus 577 ~sVvl~D 583 (798)
+-+||.|
T Consensus 273 ~d~IlID 279 (282)
T TIGR03499 273 KDLILID 279 (282)
T ss_pred CCEEEEE
T ss_conf 8999981
No 342
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.57 E-value=0.0092 Score=39.00 Aligned_cols=109 Identities=19% Similarity=0.264 Sum_probs=65.4
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEEHHHHHCCCCCCHH--CCCCCHHC----------CCCCCCCCCH
Q ss_conf 7874068861432003889999987304-773377206886124653011--04780002----------5644431003
Q gi|254780163|r 504 NKPIGCYVFSGPTGVGKTEISKQLAFAL-GVQLLRFDMSEYMERHAVSRL--IGAPPGYV----------GFGQGGILAD 570 (798)
Q Consensus 504 ~rP~g~flf~GptGvGKTelak~la~~~-~~~lir~dmsey~e~~~vs~L--iGappGYv----------G~~egg~Lte 570 (798)
+|---.+||.||.|+||+.+|+.+|..+ ...-- + .+-...-.--++ -|+-|-|. |-|+=-.|.+
T Consensus 20 ~r~~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~--~-~~~Cg~C~sC~l~~~g~HPD~~~i~~~~~k~I~vd~IR~l~~ 96 (324)
T PRK06871 20 GRGHHALLFKADSGLGTEQLIRALAQWLMCQAPG--D-EQPCGQCHSCHLFQAGNHPDFHILEPIDGKDIGVDQVREINE 96 (324)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCC--C-CCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 9954378768999978999999999998289999--9-998888989999973899987998467888788999999999
Q ss_pred HHHHCCC----EEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCC
Q ss_conf 5551585----1777404455028999999998777502177997761254299994242
Q gi|254780163|r 571 SVDQNPY----SVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNA 626 (798)
Q Consensus 571 ~vr~~P~----sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~ 626 (798)
.+...|+ -|++.|+.|+-...-.|.||..|+|-- .||++|+.|+-
T Consensus 97 ~~~~~~~~g~~KV~iI~~ae~m~~~AaNALLKtLEEPp-----------~~~~fiL~t~~ 145 (324)
T PRK06871 97 KVSQFAQQGGNKVVYIQGAERLTEAAANALLKTLEEPR-----------PNTYFLLQADL 145 (324)
T ss_pred HHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCC-----------CCEEEEEEECC
T ss_conf 98646220596699975888857999999999833898-----------78389998787
No 343
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.56 E-value=5.6e-05 Score=54.92 Aligned_cols=109 Identities=26% Similarity=0.358 Sum_probs=65.2
Q ss_pred CCCEEEEECCCCHHHHHHHHHHH------HHC-CCCEEEEEH---HHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHH-
Q ss_conf 74068861432003889999987------304-773377206---8861246530110478000256444310035551-
Q gi|254780163|r 506 PIGCYVFSGPTGVGKTEISKQLA------FAL-GVQLLRFDM---SEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQ- 574 (798)
Q Consensus 506 P~g~flf~GptGvGKTelak~la------~~~-~~~lir~dm---sey~e~~~vs~LiGappGYvG~~egg~Lte~vr~- 574 (798)
-=|+|-|+||||||||-+.-.|| +|. ...||+.|- +-+-.=.+..+++|-|- ||=++. ..|-..+.+
T Consensus 347 ~gGv~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRiga~eQL~~y~~ilgvpv-~~~~~~-~~l~~~l~~l 424 (557)
T PRK12727 347 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAV-HEADSA-ESLLDLLERL 424 (557)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEE-EEECCH-HHHHHHHHHH
T ss_conf 07647874377767311799999999997399818999726640879999999999839757-982899-9999999983
Q ss_pred CCCEEEEECCHHHCCHHHH-HHHHHHHHHHHCCCCCCCEECCCCEEEEEECCC
Q ss_conf 5851777404455028999-999998777502177997761254299994242
Q gi|254780163|r 575 NPYSVVLLDEIEKSHPDVL-NILLQIMDYGILTDQSGKKISFRNVILIMTTNA 626 (798)
Q Consensus 575 ~P~sVvl~DEiEKAh~~v~-~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~ 626 (798)
+-+.+||.|-.--.|.|.. .--|+.|+. ++.| +++++|.+|.
T Consensus 425 ~~~~lvliDTaG~~~rd~~~~~~~~~l~~-------~~~~---~~~Lvl~a~~ 467 (557)
T PRK12727 425 RDYKLVLIDTAGMGQRDRALAAQLNWLRA-------ARQV---TSLLVLPANA 467 (557)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHC-------CCCC---CEEEEEECCC
T ss_conf 69998999499988469999999998751-------4776---3599996889
No 344
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.55 E-value=0.00032 Score=49.47 Aligned_cols=151 Identities=22% Similarity=0.311 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHC--CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHH--------HCC
Q ss_conf 222178999999998622--6778748966764116689999999985489883452014455404675--------306
Q gi|254780163|r 205 ILVGRHEEINRTIQILCR--RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNL--------IAG 274 (798)
Q Consensus 205 PVIGRd~EI~riiqIL~R--R~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l--------~ag 274 (798)
-+||+..-++++.+.+.+ .+..|+++.||+||||.-++..+-+.= .-++..++.+|-++| +=|
T Consensus 187 elIG~S~~m~~l~~~i~~vA~sd~pVLI~GEtGTGKelvAr~IH~~S-------~R~~~Pfv~vNCaalpe~l~EseLFG 259 (510)
T PRK05022 187 EMIGQSPAMQQLKKEIEVVAASDLNVLITGETGVGKELVARAIHQAS-------PRAVKPLVYLNCAALPESLAESELFG 259 (510)
T ss_pred CEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCC-------CCCCCCCEEEECCCCCHHHHHHHHCC
T ss_conf 75208999999999999996899988988989813999999999668-------87899857888999985678998659
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCC-------------EEEEEECC
Q ss_conf 34312378999999987203898399973616630155444344777888876630266-------------03887304
Q gi|254780163|r 275 TRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGA-------------VRCIGSTT 341 (798)
Q Consensus 275 ~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~-------------~~~IgatT 341 (798)
..+|.|-.-...-....+.+.+=.||+|||..+ ++++-.-|--+|..|+ +|+|+||.
T Consensus 260 -h~kGaFtGA~~~r~G~fe~A~gGTLfLDEI~~L---------pl~~Q~KLLrvLq~g~iqrvG~~~~~~vdvRIIAATn 329 (510)
T PRK05022 260 -HVKGAFTGAISNRSGKFELADGGTLFLDEIGEL---------PLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATN 329 (510)
T ss_pred -CCCCCCCCCCCCCCCCEEECCCCEEEEECHHHC---------CHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEEECC
T ss_conf -777886886556788101778987987574549---------9999999999984795885589946666689996078
Q ss_pred HHHHHHHHHCCH---HHHHHCEEEEECCCCHHHHH
Q ss_conf 899999852011---14320014430687868999
Q gi|254780163|r 342 YSEYRQFFEKDK---ALVRRFQKIDVSEPSIEDAI 373 (798)
Q Consensus 342 ~~ey~~~~e~d~---al~rrF~~i~v~ep~~~~~~ 373 (798)
-+ ..+-++.-. -|--|...+.|.=|.-.+-.
T Consensus 330 rd-L~~~V~~G~FR~DLYyRLsv~~I~vPPLRER~ 363 (510)
T PRK05022 330 RD-LREEVLAGRFRADLYHRLSVFPLPVPPLRERG 363 (510)
T ss_pred CC-HHHHHHCCCHHHHHHHHHHCCCCCCCCHHHCH
T ss_conf 35-99998839638999987620403480865555
No 345
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.54 E-value=0.01 Score=38.67 Aligned_cols=42 Identities=50% Similarity=0.791 Sum_probs=21.4
Q ss_pred HHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 53458999999999877520445657874068861432003889999987
Q gi|254780163|r 479 VYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLA 528 (798)
Q Consensus 479 v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la 528 (798)
|+||++-+..+.+++...| =.-.|||+||-|||||-+||.+|
T Consensus 18 vvGQe~v~~~L~nal~~~r--------i~hAYlfsG~RGvGKTt~Ari~A 59 (515)
T COG2812 18 VVGQEHVVKTLSNALENGR--------IAHAYLFSGPRGVGKTTIARILA 59 (515)
T ss_pred HCCCHHHHHHHHHHHHHCC--------CHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 6364899999999998084--------23336513777767104999999
No 346
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=97.53 E-value=7e-05 Score=54.25 Aligned_cols=95 Identities=26% Similarity=0.342 Sum_probs=57.1
Q ss_pred EEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCC---CHHCCCCCCCCCCHHHHHCCCEEEEECCHHH
Q ss_conf 8614320038899999873047733772068861246530110478---0002564443100355515851777404455
Q gi|254780163|r 511 VFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAP---PGYVGFGQGGILADSVDQNPYSVVLLDEIEK 587 (798)
Q Consensus 511 lf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGap---pGYvG~~egg~Lte~vr~~P~sVvl~DEiEK 587 (798)
.|.||+|+|||.+|+.||..+.+.+- +-.+.++...-... .||.| | -|+++|++-.
T Consensus 2 ~l~G~~G~GKS~~a~~la~~~~~~~~------~~~~~~~Y~~~~~~~~wdgY~g--q-------------~vvi~DD~~~ 60 (105)
T pfam00910 2 WLYGPPGCGKSTLAKYLARALLDHLG------LPKKDSVYSRNPDDDFWDGYTG--Q-------------PVVIIDDFGQ 60 (105)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHC------CCCCCCEEECCCCCCCCCCCCC--C-------------EEEEEECCCC
T ss_conf 89799989889999999999999837------7878977967887765678899--8-------------5799965777
Q ss_pred CCHH--HHHHHHHHHHHHHCC----CCCCCEECCCCEEEEEECCC
Q ss_conf 0289--999999987775021----77997761254299994242
Q gi|254780163|r 588 SHPD--VLNILLQIMDYGILT----DQSGKKISFRNVILIMTTNA 626 (798)
Q Consensus 588 Ah~~--v~~~llqild~G~lt----d~~Gr~vdf~n~iii~TsN~ 626 (798)
-..+ .+..|.|+.+.-.+. +-.++..-|+--+||+|||.
T Consensus 61 ~~~~~~~~~~~~~lvs~~p~~~~ma~le~Kg~~f~s~~vi~tsN~ 105 (105)
T pfam00910 61 NPDGPSDEAELIRLVSSTPYPPPMAALEEKGTPFTSKFVIVTSNF 105 (105)
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEECCC
T ss_conf 888628899999875699838886676148884468889994799
No 347
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=97.53 E-value=0.00016 Score=51.70 Aligned_cols=91 Identities=24% Similarity=0.322 Sum_probs=54.6
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHC---CCCEEEE-EHHHHHCCCCC-CHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEE
Q ss_conf 068861432003889999987304---7733772-06886124653-011047800025644431003555158517774
Q gi|254780163|r 508 GCYVFSGPTGVGKTEISKQLAFAL---GVQLLRF-DMSEYMERHAV-SRLIGAPPGYVGFGQGGILADSVDQNPYSVVLL 582 (798)
Q Consensus 508 g~flf~GptGvGKTelak~la~~~---~~~lir~-dmsey~e~~~v-s~LiGappGYvG~~egg~Lte~vr~~P~sVvl~ 582 (798)
|.+|++||||.|||.+.++|.... +.+++.+ |--||.-+|-- ..+.-. .+-+.|+ ..+-.++|.+| .+|++
T Consensus 140 ~~ilIsG~TGSGKTT~l~all~~i~~~~~riitiED~~El~l~~~~~v~l~~~-~~~~t~~--~ll~~~LR~~P-D~Iiv 215 (283)
T pfam00437 140 GNILVSGGTGSGKTTLLYALLNEINTDDERIVTIEDPVEIQLEGPNQVQLNTR-LAGVTFA--DLLRAALRQRP-DRIMV 215 (283)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCEECCCCCCEEEEEEC-CCCCCHH--HHHHHHHCCCC-CEEEE
T ss_conf 75999889999889999999984087776278733785231798878999855-8876999--99999638899-98975
Q ss_pred CCHHHCCHHHHHHHHHHHHHHHC
Q ss_conf 04455028999999998777502
Q gi|254780163|r 583 DEIEKSHPDVLNILLQIMDYGIL 605 (798)
Q Consensus 583 DEiEKAh~~v~~~llqild~G~l 605 (798)
.||-- .+.+.+ +|.+-.|++
T Consensus 216 GEiR~--~Ea~~~-l~a~~TGH~ 235 (283)
T pfam00437 216 GEIRD--GETADI-LRAANTGHP 235 (283)
T ss_pred CCCCC--HHHHHH-HHHHHCCCC
T ss_conf 78699--899999-999975998
No 348
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.53 E-value=0.005 Score=40.90 Aligned_cols=180 Identities=17% Similarity=0.237 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHH-HHHCCCCCCE-EEECCCCCHHHHHHHHHHHHHHCCCCCHH--------------HHEEEEEEEE
Q ss_conf 122217899999999-8622677874-89667641166899999999854898834--------------5201445540
Q gi|254780163|r 204 DILVGRHEEINRTIQ-ILCRRSKNNP-LYVGDPGVGKTAIAEGFAKQIVDGMVPDI--------------LLGARIFSLD 267 (798)
Q Consensus 204 DPVIGRd~EI~riiq-IL~RR~KNn~-~lvG~~gvGktaive~la~~i~~~~vp~~--------------l~~~~i~~ld 267 (798)
|-++|-.+.|.++++ .+.+.+=.+. ++.|++|+||+.++..+|+.+.-.+.... ...--++.+.
T Consensus 5 ~~~~~~Q~~i~~~L~~~i~~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~LlC~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~ 84 (329)
T PRK08058 5 EQLTALQPIVVKMLQNSIAKNRLAHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIESGNHPDVHLVA 84 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEC
T ss_conf 88883189999999999985996615655789998899999999999739999999988788899998769999767745
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHCC----CCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCC--CCEEEEEECC
Q ss_conf 467530634312378999999987203----8983999736166301554443447778888766302--6603887304
Q gi|254780163|r 268 MGNLIAGTRYRGDFEERIKKIVKEIES----YANAILYIDEIHTLVGAGSASGISVDASNLLKPALSS--GAVRCIGSTT 341 (798)
Q Consensus 268 ~~~l~ag~~~rg~fe~r~~~~~~~~~~----~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~r--g~~~~IgatT 341 (798)
. .|...+ =+.++.+.+++.. .+.-|..||+.|++ +..|||-|-=.|.- ...-+|=.||
T Consensus 85 p----~~~~i~---idqiR~L~~~~~~~p~~g~~KV~II~~Ae~m---------~~~AaNALLKtLEEPp~~t~fIL~t~ 148 (329)
T PRK08058 85 P----DGQSIK---KDQIRYLKEEFSKSGVESNKKVYIIEHADKM---------TASAANSLLKFLEEPSGDTTAILLTE 148 (329)
T ss_pred C----CCCCCC---HHHHHHHHHHHCCCCCCCCCEEEEEECHHHH---------CHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 6----614077---9999999999643875788679997347762---------99999999998646897867998729
Q ss_pred HHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 89999985201114320014430687868999999861276654103512111789999986542015556467988998
Q gi|254780163|r 342 YSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVID 421 (798)
Q Consensus 342 ~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllD 421 (798)
.. .+.. +-.-.|-|.+.+.+|+.++....|.. +++ +++....+..++ + -|++|.++++
T Consensus 149 ~~--~~lL---pTI~SRCq~i~f~~~~~~~i~~~L~~--------~~i--~~~~a~l~a~~~-----g--s~~~A~~l~~ 206 (329)
T PRK08058 149 NK--HQIL---PTILSRCQVVEFRPLPPESLIQRLQE--------EGI--SESLATLLAQLT-----N--SVEEALALSE 206 (329)
T ss_pred CH--HHHH---HHHHHCCEEEECCCCCHHHHHHHHHH--------CCC--CHHHHHHHHHHC-----C--CHHHHHHHHC
T ss_conf 96--6643---68863142565889999999999998--------799--989999999878-----9--9999998842
No 349
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=97.52 E-value=0.0007 Score=47.07 Aligned_cols=133 Identities=26% Similarity=0.372 Sum_probs=67.5
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCC-------CHHH-HEEEEEEEEHHHHHCCC----------------CCC---C
Q ss_conf 7489667641166899999999854898-------8345-20144554046753063----------------431---2
Q gi|254780163|r 227 NPLYVGDPGVGKTAIAEGFAKQIVDGMV-------PDIL-LGARIFSLDMGNLIAGT----------------RYR---G 279 (798)
Q Consensus 227 n~~lvG~~gvGktaive~la~~i~~~~v-------p~~l-~~~~i~~ld~~~l~ag~----------------~~r---g 279 (798)
+.++.|+||||||+++..++..+.+..+ ++.. .+.|+ ..++-.+.+|. +|. .
T Consensus 1 ki~ITG~pGvGKTTli~kv~~~l~~~~~~v~GF~T~evre~g~R~-GF~iv~l~~g~~~~la~~~~~~~~~vGky~v~~~ 79 (168)
T pfam03266 1 RIFITGPPGVGKTTLVKKVIELLKSEGVKVGGFYTPEVREGGRRI-GFDIVDLASGERGPLARVGGVSGPRVGKYVVNLE 79 (168)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCEECCCCEE-EEEEEECCCCCEEEEEEECCCCCCCCCCCEECHH
T ss_conf 989978999889999999999998679707489930212589378-9999990478267744406887754577166689
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHH-
Q ss_conf 3789999999872038983999736166301554443447778888766302660388730489999985201114320-
Q gi|254780163|r 280 DFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRR- 358 (798)
Q Consensus 280 ~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rr- 358 (798)
.||.-...++.......+ +++|||| |.-+-.+-.....+.-+|.++ -.+||.-...-+.-+++ .+.+|
T Consensus 80 ~fe~~~~~~L~~a~~~~d-livIDEI------G~mEl~s~~F~~~v~~~l~~~-~~vl~ti~~~~~~~~v~---~i~~~~ 148 (168)
T pfam03266 80 EFEEIALPALRRALEEAD-LIIIDEI------GPMELKSPKFREAIEEVLSSN-KPVLAVVHRRSDSPLVE---RIRRRP 148 (168)
T ss_pred HHHHHHHHHHHHCCCCCC-EEEEECC------CHHHHHHHHHHHHHHHHHCCC-CCEEEEEEECCCCHHHH---HHHCCC
T ss_conf 999999999984066898-9999763------145331499999999996699-97999997258983899---974179
Q ss_pred -CEEEEECCCCHHH
Q ss_conf -0144306878689
Q gi|254780163|r 359 -FQKIDVSEPSIED 371 (798)
Q Consensus 359 -F~~i~v~ep~~~~ 371 (798)
+..+.|.+-+.+.
T Consensus 149 d~~i~~vt~~NRd~ 162 (168)
T pfam03266 149 DVKIFVVTEENRDA 162 (168)
T ss_pred CCEEEEECHHHHHH
T ss_conf 93899978688664
No 350
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.52 E-value=0.00023 Score=50.57 Aligned_cols=89 Identities=27% Similarity=0.411 Sum_probs=51.7
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHH--H----HC-CCCEEEEEHH---HHHCCCCCCHHCCCCCHHCCCCCCCCCCHHH
Q ss_conf 57874068861432003889999987--3----04-7733772068---8612465301104780002564443100355
Q gi|254780163|r 503 PNKPIGCYVFSGPTGVGKTEISKQLA--F----AL-GVQLLRFDMS---EYMERHAVSRLIGAPPGYVGFGQGGILADSV 572 (798)
Q Consensus 503 ~~rP~g~flf~GptGvGKTelak~la--~----~~-~~~lir~dms---ey~e~~~vs~LiGappGYvG~~egg~Lte~v 572 (798)
+.+.-+++.|+||||||||-+.-.|| | +- ...||.+|-= ---.=.+.++++|-| =+|=++ ...|.+++
T Consensus 206 ~~~~~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQLk~Ya~ilgvp-~~v~~~-~~~l~~al 283 (412)
T PRK05703 206 ILEQGGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQLKTYAKIMGIP-VKVAYD-PKELAKAL 283 (412)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCE-EEEECC-HHHHHHHH
T ss_conf 5456736999888887567699999999999729981799983767777999999999971973-798479-99999999
Q ss_pred HH-CCCEEEEECCHHHCCHHHH
Q ss_conf 51-5851777404455028999
Q gi|254780163|r 573 DQ-NPYSVVLLDEIEKSHPDVL 593 (798)
Q Consensus 573 r~-~P~sVvl~DEiEKAh~~v~ 593 (798)
++ ..+-+||.|--=-.|.|..
T Consensus 284 ~~~~~~dlILIDTaG~s~~d~~ 305 (412)
T PRK05703 284 EQLANCDLILIDTAGRSQRDPR 305 (412)
T ss_pred HHHCCCCEEEEECCCCCCCCHH
T ss_conf 8715899799968988978999
No 351
>pfam01637 Arch_ATPase Archaeal ATPase. This family contain a conserved P-loop motif that is involved in binding ATP. This family is almost exclusively found in archaebacteria and particularly in Methanococcus jannaschii that encodes sixteen members of this family.
Probab=97.52 E-value=0.0085 Score=39.26 Aligned_cols=170 Identities=14% Similarity=0.181 Sum_probs=88.3
Q ss_pred HCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCC---CCEEEEEHHHHHCCCCC-------
Q ss_conf 34589999999998775204456578740688614320038899999873047---73377206886124653-------
Q gi|254780163|r 480 YGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALG---VQLLRFDMSEYMERHAV------- 549 (798)
Q Consensus 480 ~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~---~~lir~dmsey~e~~~v------- 549 (798)
+|-++-++.+.+.+.. .++.| .+..||-++|||.|.+..+.... ...+-+|..+-...+.+
T Consensus 2 ~~Re~EL~~L~~~~~~------~~~~~---ivi~G~RR~GKTsLi~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 72 (223)
T pfam01637 2 FDREKELKELEEWAER------GTYPI---IVVYGPRRCGKTALLREFLEELRELGYRVIYYDPLRREFEEKLDRFEEAK 72 (223)
T ss_pred CCHHHHHHHHHHHHHC------CCCCE---EEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHH
T ss_conf 8979999999999966------99718---99986887879999999998633468528999514443799999888889
Q ss_pred ------CHHCCCCCHHCCCCCCCC---CCHHHH-HCCCEEEEECCHHH-----CCHHHHHHHHHHHHHHHCCCCCCCEEC
Q ss_conf ------011047800025644431---003555-15851777404455-----028999999998777502177997761
Q gi|254780163|r 550 ------SRLIGAPPGYVGFGQGGI---LADSVD-QNPYSVVLLDEIEK-----SHPDVLNILLQIMDYGILTDQSGKKIS 614 (798)
Q Consensus 550 ------s~LiGappGYvG~~egg~---Lte~vr-~~P~sVvl~DEiEK-----Ah~~v~~~llqild~G~ltd~~Gr~vd 614 (798)
...++...+......... +-+.+. +....||.|||+-. ..|++...|..++| ++...
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDEfq~l~~~~~~~~~~~~l~~~~d--~~~~~------ 144 (223)
T pfam01637 73 RLAEALGDALPKIGIAKSKLAFLSLTLLFELLKRKGKKIAIIIDEVQYAIGLNGAESYVKLLLNLID--YPPKE------ 144 (223)
T ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHCCCCHHHHHHHHHHHH--HHHCC------
T ss_conf 9999987651233222112078899999999985599659997016776402443059999999999--75245------
Q ss_pred CCCE-EEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 2542-9999424214553303689882111488999998728878817768289628899999999999999999
Q gi|254780163|r 615 FRNV-ILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKL 688 (798)
Q Consensus 615 f~n~-iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l 688 (798)
+|+ +|++.|..|- ..+-+. . +..|.+|.+. +...|++..+....+...+.++
T Consensus 145 -~~~~~I~~GS~~~~------------------m~~~~~-~-~~plygR~~~-i~l~p~~~~~~~efl~~~f~e~ 197 (223)
T pfam01637 145 -YHLIVVLCGSSEGL------------------TIELLD-Y-KSPLYGRHRW-ALLKPFDFETAWNFLREGFEEL 197 (223)
T ss_pred -CCEEEEEECCHHHH------------------HHHHHC-C-CCCCCCCCCE-EEECCCCHHHHHHHHHHHHHHH
T ss_conf -77589997271999------------------999862-0-5653575022-7726899899999999999984
No 352
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.47 E-value=0.0015 Score=44.68 Aligned_cols=196 Identities=19% Similarity=0.188 Sum_probs=98.5
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHCC----CCCHHHHEEEE-EEEEHHHHHC-CCCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 74896676411668999999998548----98834520144-5540467530-634312378999999987203898399
Q gi|254780163|r 227 NPLYVGDPGVGKTAIAEGFAKQIVDG----MVPDILLGARI-FSLDMGNLIA-GTRYRGDFEERIKKIVKEIESYANAIL 300 (798)
Q Consensus 227 n~~lvG~~gvGktaive~la~~i~~~----~vp~~l~~~~i-~~ld~~~l~a-g~~~rg~fe~r~~~~~~~~~~~~~~il 300 (798)
.+++-|+.|.+|++++.+|+..+-.+ ++|...-.-++ =+||+..-+. |-. .|+. +++.+ ..+-||
T Consensus 27 Gvlirg~~Gtakst~~r~l~~llp~~~p~~~lPl~~tedrl~G~lDi~~tL~~G~~---v~~~---GLLa~---A~~gvL 97 (584)
T PRK13406 27 GVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRP---VAER---GLLAE---ADGGVL 97 (584)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHCCCCCHHHHHHCCCE---ECCC---CHHHC---CCCCEE
T ss_conf 18997799957999999999756899984656999974151471259999976898---5257---53330---369989
Q ss_pred EECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEE---------------EEECCHHHHHHHHHCCHHHHHHCEE-EEE
Q ss_conf 973616630155444344777888876630266038---------------8730489999985201114320014-430
Q gi|254780163|r 301 YIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRC---------------IGSTTYSEYRQFFEKDKALVRRFQK-IDV 364 (798)
Q Consensus 301 fideih~ligag~~~g~~~d~an~lkP~L~rg~~~~---------------IgatT~~ey~~~~e~d~al~rrF~~-i~v 364 (798)
||||+.-+ .-...++|--+++.|..++ ||.....|=- -...++|.+||-- +.+
T Consensus 98 yvdevnll---------~d~lv~~Ll~a~~~G~~~vEReGiS~~~parf~LIa~deg~e~d--e~~~~~l~dRla~~vd~ 166 (584)
T PRK13406 98 VLAMAERL---------EPGTAARLAAALDAGEVAIERDGLALRMPARFGLVALDEGAEED--ERAPAALADRLAFHLDL 166 (584)
T ss_pred EEECHHHC---------CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC--CCHHHHHHHHHCCCCCH
T ss_conf 98514737---------88899999999854874002587663566505899946788764--31107888765070681
Q ss_pred CCCCHHHHHH--HH-HHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 6878689999--99-86127665410351211178999998654201555646798899865333321144322113657
Q gi|254780163|r 365 SEPSIEDAIE--IV-KGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITE 441 (798)
Q Consensus 365 ~ep~~~~~~~--iL-~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea~a~~~~~~~~~~~~~~~~ 441 (798)
..-...++-. ++ ..+..--+....|.++++.+..++.++.++=-+-.= --|-++-.|+|...+ ..+..|+.
T Consensus 167 ~~~~~~~~~~~~~~~~~i~~Ar~~L~~V~i~d~~~~~l~~~a~~~gv~g~R--a~i~~~raArA~AAl----~Gr~~V~~ 240 (584)
T PRK13406 167 DGLALRDTREFPIDADDIAAARARLAAVRVPPEAIEALCAAAAALGIASLR--APLLALRAARAAAAL----AGRTAVEE 240 (584)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHH----CCCCCCCH
T ss_conf 676666401111236899999986786666999999999999983998620--999999999999997----49997889
Q ss_pred HHHHHHH
Q ss_conf 8999866
Q gi|254780163|r 442 KDIKKTI 448 (798)
Q Consensus 442 ~~i~~~~ 448 (798)
+||..++
T Consensus 241 ~Dl~~Aa 247 (584)
T PRK13406 241 ADIALAA 247 (584)
T ss_pred HHHHHHH
T ss_conf 9999999
No 353
>KOG0744 consensus
Probab=97.47 E-value=0.0023 Score=43.29 Aligned_cols=155 Identities=23% Similarity=0.306 Sum_probs=91.4
Q ss_pred HHCCCCCC--------EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCH---HHHHHHHH
Q ss_conf 62267787--------48966764116689999999985489883452014455404675306343123---78999999
Q gi|254780163|r 220 LCRRSKNN--------PLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGD---FEERIKKI 288 (798)
Q Consensus 220 L~RR~KNn--------~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~---fe~r~~~~ 288 (798)
+++++-|. .+|-|+||.|||++-.+|||+..=.. -..-.-..+++++-.+|-+ |+-+| .=..|-.=
T Consensus 164 fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~-~~~y~~~~liEinshsLFS--KWFsESgKlV~kmF~k 240 (423)
T KOG0744 164 FSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRT-NDRYYKGQLIEINSHSLFS--KWFSESGKLVAKMFQK 240 (423)
T ss_pred HHHCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHEEEE-CCCCCCCEEEEEEHHHHHH--HHHHHHHHHHHHHHHH
T ss_conf 876178874466414899857999882279999987514652-3764440699970467889--8871211389999999
Q ss_pred HHHHCC-CCC-EEEEECCHHHHHCCC---CCCCCCCC---HHHHHHHHHCC---CCEEEEEECCHHHHHHHHHCCHHHHH
Q ss_conf 987203-898-399973616630155---44434477---78888766302---66038873048999998520111432
Q gi|254780163|r 289 VKEIES-YAN-AILYIDEIHTLVGAG---SASGISVD---ASNLLKPALSS---GAVRCIGSTTYSEYRQFFEKDKALVR 357 (798)
Q Consensus 289 ~~~~~~-~~~-~ilfideih~ligag---~~~g~~~d---~an~lkP~L~r---g~~~~IgatT~~ey~~~~e~d~al~r 357 (798)
|.|+-+ .++ |-+.|||+-.|--|- .+...+-| +-|-|..-|-| -.=-+|-+|..=+ -.-|.||..
T Consensus 241 I~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~----~siD~AfVD 316 (423)
T KOG0744 241 IQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLT----DSIDVAFVD 316 (423)
T ss_pred HHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCHH----HHHHHHHHH
T ss_conf 9999717896899980787888999875413799821899999999989986047977999626267----777888611
Q ss_pred HCEE-EEECCCCHHHHHHHHHHHHH
Q ss_conf 0014-43068786899999986127
Q gi|254780163|r 358 RFQK-IDVSEPSIEDAIEIVKGIKP 381 (798)
Q Consensus 358 rF~~-i~v~ep~~~~~~~iL~~~~~ 381 (798)
|=.. -.|..|+.+.-+.||++-..
T Consensus 317 RADi~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744 317 RADIVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred HHHHEEECCCCCHHHHHHHHHHHHH
T ss_conf 7542110389639999999999999
No 354
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.47 E-value=0.0003 Score=49.70 Aligned_cols=83 Identities=28% Similarity=0.376 Sum_probs=51.8
Q ss_pred CEEEEECCCCHHHHHHHHHHH--H----HC-CCCEEEEEHH---HHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHH-CC
Q ss_conf 068861432003889999987--3----04-7733772068---861246530110478000256444310035551-58
Q gi|254780163|r 508 GCYVFSGPTGVGKTEISKQLA--F----AL-GVQLLRFDMS---EYMERHAVSRLIGAPPGYVGFGQGGILADSVDQ-NP 576 (798)
Q Consensus 508 g~flf~GptGvGKTelak~la--~----~~-~~~lir~dms---ey~e~~~vs~LiGappGYvG~~egg~Lte~vr~-~P 576 (798)
|+|.|+||||||||-+.-.|| | |- ...||+.|-- -.-.=.+.++++|-| =||=|+. ..|-.++.+ +-
T Consensus 177 gV~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~IlgvP-v~vv~~~-~eL~~aL~~l~~ 254 (404)
T PRK06995 177 GVFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP-VHAVKDA-ADLRLALAELRN 254 (404)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCE-EEEECCH-HHHHHHHHHHCC
T ss_conf 55898668887637589999999999838983799976875478999999999875955-9995999-999999997089
Q ss_pred CEEEEECCHHHCCHHH
Q ss_conf 5177740445502899
Q gi|254780163|r 577 YSVVLLDEIEKSHPDV 592 (798)
Q Consensus 577 ~sVvl~DEiEKAh~~v 592 (798)
+-+||.|-.=-.|.|-
T Consensus 255 ~dlILIDTaGrs~rD~ 270 (404)
T PRK06995 255 KHIVLIDTVGMSQRDR 270 (404)
T ss_pred CCEEEEECCCCCCCCH
T ss_conf 9999980999897688
No 355
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.46 E-value=0.00043 Score=48.56 Aligned_cols=181 Identities=16% Similarity=0.207 Sum_probs=103.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHH-----
Q ss_conf 530356544258877548611222178999999998622677874896676411668999999998548988345-----
Q gi|254780163|r 184 FPALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDIL----- 258 (798)
Q Consensus 184 ~~~LdkFg~DLTe~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l----- 258 (798)
||.|..+=..|......|++- .--++.|++|+||.+++..+|+.+.-.+ |...
T Consensus 4 YPWl~~~~~~l~~~~~~~rl~---------------------HA~L~~G~~G~Gk~~la~~~a~~llC~~-~~~~~~Cg~ 61 (334)
T PRK07993 4 YPWLRPDYEKLVGSYQAGRGH---------------------HALLIQALPGMGDDALIYALSRYLLCQQ-PQGHKSCGH 61 (334)
T ss_pred CCCCHHHHHHHHHHHHCCCCC---------------------EEEEEECCCCCCHHHHHHHHHHHHCCCC-CCCCCCCCC
T ss_conf 888789999999999859810---------------------4675479999889999999999981899-999999999
Q ss_pred -H-----------EEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHC----CCCCEEEEECCHHHHHCCCCCCCCCCCHH
Q ss_conf -2-----------0144554046753063431237899999998720----38983999736166301554443447778
Q gi|254780163|r 259 -L-----------GARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIE----SYANAILYIDEIHTLVGAGSASGISVDAS 322 (798)
Q Consensus 259 -~-----------~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~----~~~~~ilfideih~ligag~~~g~~~d~a 322 (798)
. |..++.-+- +|...+ =+-++.+.+.+. ..+.-|.+||+.+.+ +..||
T Consensus 62 C~~C~l~~~~~HPD~~~i~pe~----~~~~I~---IdqIR~l~~~~~~~~~~g~~kV~iI~~Ae~m---------n~~Aa 125 (334)
T PRK07993 62 CRGCQLMQAGTHPDYYTLTPEK----GKSSLG---VDAVREVTEKLYEHARLGGAKVVWLPDAALL---------TDAAA 125 (334)
T ss_pred CHHHHHHHCCCCCCEEEECCCC----CCCCCC---HHHHHHHHHHHHHCCCCCCCEEEEECCHHHH---------CHHHH
T ss_conf 9789998668999847753422----345599---9999999999843665699479997667775---------99999
Q ss_pred HHHHHHHCC--CCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHH
Q ss_conf 888766302--660388730489999985201114320014430687868999999861276654103512111789999
Q gi|254780163|r 323 NLLKPALSS--GAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAV 400 (798)
Q Consensus 323 n~lkP~L~r--g~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av 400 (798)
|-|--.|.- +..-+|=.|+ .+.+ =-+-+-.|-|.+.+..|+.+++...|..- +..+++....++
T Consensus 126 NaLLKtLEEPp~~t~~iL~t~--~~~~---lLpTI~SRCq~~~~~~~~~~~~~~wL~~~---------~~~~~~~~~~al 191 (334)
T PRK07993 126 NALLKTLEEPPEKTWFFLACR--EPAR---LLATLRSRCRLHYLAPPPEQYALTWLSRE---------VTMSQEALLAAL 191 (334)
T ss_pred HHHHHHHCCCCCCEEEEEECC--CHHH---CCCHHHHHCCCCCCCCCCHHHHHHHHHHH---------CCCCHHHHHHHH
T ss_conf 999986127998849998669--8565---72388752304158997999999999873---------689889999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 9865420155564679889986
Q gi|254780163|r 401 QLSVRHFTSRKLPDKAIDVIDE 422 (798)
Q Consensus 401 ~ls~ryi~~r~lPdkAidllDe 422 (798)
.+|.- -|.+|.++++.
T Consensus 192 ~la~G------spl~A~~l~~~ 207 (334)
T PRK07993 192 RLSAG------APGAALALLQP 207 (334)
T ss_pred HHCCC------CHHHHHHHHCC
T ss_conf 98499------89999998256
No 356
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.42 E-value=0.0005 Score=48.11 Aligned_cols=119 Identities=22% Similarity=0.412 Sum_probs=66.3
Q ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHH--HHC-------CCCEEEEEH---HHHHCCCCCCHHCCCCCHHCCCCCCCCCC
Q ss_conf 657874068861432003889999987--304-------773377206---88612465301104780002564443100
Q gi|254780163|r 502 DPNKPIGCYVFSGPTGVGKTEISKQLA--FAL-------GVQLLRFDM---SEYMERHAVSRLIGAPPGYVGFGQGGILA 569 (798)
Q Consensus 502 ~~~rP~g~flf~GptGvGKTelak~la--~~~-------~~~lir~dm---sey~e~~~vs~LiGappGYvG~~egg~Lt 569 (798)
+..+| .++.|+||||||||-+.-.|| |.+ ...||..|- .-.-.=-+.+.++|-|= +|-|.. -.|.
T Consensus 170 ~~~k~-~vi~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~il~vp~-~v~~~~-~dl~ 246 (388)
T PRK12723 170 DNLKK-RIFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV-KAIESF-KDLK 246 (388)
T ss_pred CCCCC-EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCE-EEECCH-HHHH
T ss_conf 35576-28999899887578799999999998626767737999807875889999999999978806-985788-9999
Q ss_pred HHHHH-CCCEEEEECCHHHCCHHHH--HHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHH
Q ss_conf 35551-5851777404455028999--999998777502177997761254299994242145533
Q gi|254780163|r 570 DSVDQ-NPYSVVLLDEIEKSHPDVL--NILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMS 632 (798)
Q Consensus 570 e~vr~-~P~sVvl~DEiEKAh~~v~--~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~ 632 (798)
+++.+ +-+-+||.|--=..|.|-. .=+-++++. .+..+ ++.+++.++.+...+.
T Consensus 247 ~~l~~~~~~D~IlIDTAGrs~~d~~~~~el~~~~~~------~~~~~---~~~Lvlsat~~~~d~~ 303 (388)
T PRK12723 247 EEITQSKDFDLVLIDTIGKSPKDFMKLAEMKELLNA------CGRDA---EFHLAVSSTTKTSDIK 303 (388)
T ss_pred HHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHH------CCCCC---EEEEEECCCCCHHHHH
T ss_conf 999972499999995899885689999999999974------18984---5999987989999999
No 357
>KOG1514 consensus
Probab=97.41 E-value=0.014 Score=37.59 Aligned_cols=189 Identities=19% Similarity=0.259 Sum_probs=95.0
Q ss_pred CCCC-EEEEECCCCHHHHHHHHHHHHHC----------CCCEEEEEHHHHHCCCCCCHHCC-CCCHH-CCCCCCCCCCHH
Q ss_conf 8740-68861432003889999987304----------77337720688612465301104-78000-256444310035
Q gi|254780163|r 505 KPIG-CYVFSGPTGVGKTEISKQLAFAL----------GVQLLRFDMSEYMERHAVSRLIG-APPGY-VGFGQGGILADS 571 (798)
Q Consensus 505 rP~g-~flf~GptGvGKTelak~la~~~----------~~~lir~dmsey~e~~~vs~LiG-appGY-vG~~egg~Lte~ 571 (798)
+-.| +|...|-+|+|||-+...+-..+ .-..+-+|--.+..++.+.--|= +=+|- ++...+-.+.++
T Consensus 419 ~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~ 498 (767)
T KOG1514 419 QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNF 498 (767)
T ss_pred CCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 77740799846999883212999999999877505789860798714461588999999999755574307788999986
Q ss_pred -----HHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHH
Q ss_conf -----551585177740445502899999999877750217799776125429999424214553303689882111488
Q gi|254780163|r 572 -----VDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDA 646 (798)
Q Consensus 572 -----vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~ 646 (798)
--+++-+|||.||.|---..=+++|+-+||=-.+..+. -+||.-+|. + +..+..
T Consensus 499 ~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sK--------Lvvi~IaNT---------m----dlPEr~ 557 (767)
T KOG1514 499 RFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSK--------LVVIAIANT---------M----DLPERL 557 (767)
T ss_pred HHCCCCCCCCCEEEEECCHHHHHCCCHHHHHHHHCCCCCCCCC--------EEEEEECCC---------C----CCHHHH
T ss_conf 5416787878779996357877352098897774077678986--------699995165---------6----477988
Q ss_pred HHHHHHHHCCHHHHCCCCE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 9999987288788177682-896288999999999999999999999866988999889999999718981015326799
Q gi|254780163|r 647 DKEALRNFLSPEFLNRLDS-IIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLER 725 (798)
Q Consensus 647 ~~~~l~~~f~peflnRid~-ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r 725 (798)
.+ +---.|++- -+.|.|.+..++.+|+...|..+ -.|+..++++.+++--.-.--||-...
T Consensus 558 l~--------nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~----------~~f~~~aielvarkVAavSGDaRrald 619 (767)
T KOG1514 558 LM--------NRVSSRLGLTRICFQPYTHEQLQEIISARLKGL----------DAFENKAIELVARKVAAVSGDARRALD 619 (767)
T ss_pred HC--------CCHHHHCCCEEEECCCCCHHHHHHHHHHHCCCH----------HHCCHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 54--------311233065055137788999999999860315----------431424899999887750422788889
Q ss_pred HHHHHHH
Q ss_conf 9998623
Q gi|254780163|r 726 IIKEHVK 732 (798)
Q Consensus 726 ~i~~~i~ 732 (798)
++++-.+
T Consensus 620 ic~RA~E 626 (767)
T KOG1514 620 ICRRAAE 626 (767)
T ss_pred HHHHHHH
T ss_conf 9899999
No 358
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit; InterPro: IPR012804 Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) , . The corresponding cobalt chelatases are not homologous. Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (IPR010388 from INTERPRO). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis, (IPR011953 from INTERPRO, IPR006537 from INTERPRO, IPR006538 from INTERPRO) . The two pathways differ in the point of cobalt insertion during corrin ring formation . There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction . Cobaltochelatase shows similarities with magnesium chelatase, which is also a complex ATP-dependent enzyme made up of two separable components. However, unlike the situation in cobaltochelatase, one of these two components is membrane bound in magnesium chelatase . .
Probab=97.39 E-value=0.015 Score=37.40 Aligned_cols=205 Identities=24% Similarity=0.375 Sum_probs=124.9
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHH-----HCC-------------------------CCCHHHHEEEEEEEEHHHH--
Q ss_conf 77874896676411668999999998-----548-------------------------9883452014455404675--
Q gi|254780163|r 224 SKNNPLYVGDPGVGKTAIAEGFAKQI-----VDG-------------------------MVPDILLGARIFSLDMGNL-- 271 (798)
Q Consensus 224 ~KNn~~lvG~~gvGktaive~la~~i-----~~~-------------------------~vp~~l~~~~i~~ld~~~l-- 271 (798)
+=+-+++-|+=|+||+..|-||+-.+ ++| ..|..=....++.|-+|+=
T Consensus 24 ~iGGVLirG~KGTAKSTaaR~L~~LLP~i~~v~gC~f~cdP~~P~~~C~~C~~~~~~~G~~~~~~~~~~~V~LPlgATED 103 (688)
T TIGR02442 24 RIGGVLIRGEKGTAKSTAARGLAALLPDIDVVAGCPFSCDPDDPEEWCEECRRKLEEQGTLPSEQRPVPFVNLPLGATED 103 (688)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHH
T ss_conf 63707887788862789888487616023664047888777887040067675552047753135873588658775233
Q ss_pred -HCCCCCCCHHHHHHHH--------HHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEE-------
Q ss_conf -3063431237899999--------998720389839997361663015544434477788887663026603-------
Q gi|254780163|r 272 -IAGTRYRGDFEERIKK--------IVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVR------- 335 (798)
Q Consensus 272 -~ag~~~rg~fe~r~~~--------~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~------- 335 (798)
|.|+= +||.=|+. ||.++ + +=|||||||--| .--..|+|-=+.|.|..+
T Consensus 104 RVvG~L---Di~~al~~G~~~FqPGLLA~A--h-rGiLYiDEVNLL---------dDhlVD~lLDaaA~G~n~VEREG~S 168 (688)
T TIGR02442 104 RVVGSL---DIERALKEGEKAFQPGLLAEA--H-RGILYIDEVNLL---------DDHLVDVLLDAAAMGVNRVEREGLS 168 (688)
T ss_pred HHCCHH---HHHHHHHHCHHHHCCCCHHHH--C-CCEEEEEEECCC---------CCHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 221305---489998718566078861754--6-871678520014---------4147789999876480067635743
Q ss_pred --------EEEECCHHHHHHHHHCCHHHHHHCEE-EEECCCC-HHHHHHHHHHHHHHHH----HHC-CCEECCHHHHHHH
Q ss_conf --------88730489999985201114320014-4306878-6899999986127665----410-3512111789999
Q gi|254780163|r 336 --------CIGSTTYSEYRQFFEKDKALVRRFQK-IDVSEPS-IEDAIEIVKGIKPYFE----EHH-QLRYSKEAIRAAV 400 (798)
Q Consensus 336 --------~IgatT~~ey~~~~e~d~al~rrF~~-i~v~ep~-~~~~~~iL~~~~~~ye----~~h-~v~~~~~al~~av 400 (798)
.||+.-|||= |=-|=|-.||-- |.|.-+. .++=++|++.. ..|+ .|+ .-.=..++|..-+
T Consensus 169 ~~Hparf~L~GTMNPEEG----~LRPQLLDRFGL~V~v~~~~d~~~R~Ev~~Rr-l~~d~dP~~F~~~~~~~~~~L~~~I 243 (688)
T TIGR02442 169 VSHPARFVLIGTMNPEEG----DLRPQLLDRFGLCVDVAASRDPEERVEVIRRR-LAFDADPEAFAARWAAEQEELRERI 243 (688)
T ss_pred HHCHHHHHHHCCCCCCHH----HHCHHHHHHHHCEEEECCCCCHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 001145532203785221----10223242440115502435866899999999-7540267788999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHH---------------HHHHHHCCCCHHHHHHHH
Q ss_conf 986542015556467988998653333211---------------443221136578999866
Q gi|254780163|r 401 QLSVRHFTSRKLPDKAIDVIDEAGASQILQ---------------PLSKRRKFITEKDIKKTI 448 (798)
Q Consensus 401 ~ls~ryi~~r~lPdkAidllDea~a~~~~~---------------~~~~~~~~~~~~~i~~~~ 448 (798)
..+...+++=.+||..+..|=+.|....+. +.-..|..|+.+||.++.
T Consensus 244 ~~AR~lLp~V~l~d~~~~~I~~lc~~~~V~GhRAdi~~~raArAlAAl~GR~~V~~eDv~~Aa 306 (688)
T TIGR02442 244 AAARSLLPSVRLSDSLLRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAA 306 (688)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEECHHHHHHHH
T ss_conf 999975477658889999999999972888525999999999999877288535377899999
No 359
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=97.37 E-value=0.0051 Score=40.87 Aligned_cols=200 Identities=25% Similarity=0.331 Sum_probs=112.2
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCC------------C------------------HHHHEEEEEEEEHHHHHCCCC
Q ss_conf 7489667641166899999999854898------------8------------------345201445540467530634
Q gi|254780163|r 227 NPLYVGDPGVGKTAIAEGFAKQIVDGMV------------P------------------DILLGARIFSLDMGNLIAGTR 276 (798)
Q Consensus 227 n~~lvG~~gvGktaive~la~~i~~~~v------------p------------------~~l~~~~i~~ld~~~l~ag~~ 276 (798)
++++-|+.|.|||.++.+||-..-...+ | -.-+-.+++.+-+++
T Consensus 40 gvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~a------ 113 (423)
T COG1239 40 GALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGA------ 113 (423)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEECCEECCCCCC------
T ss_conf 26876688752779999999867963321688788998870555199986202324454221003122388763------
Q ss_pred CCCHHHHHHHH---HHHHHC------------CCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCC---------
Q ss_conf 31237899999---998720------------389839997361663015544434477788887663026---------
Q gi|254780163|r 277 YRGDFEERIKK---IVKEIE------------SYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSG--------- 332 (798)
Q Consensus 277 ~rg~fe~r~~~---~~~~~~------------~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg--------- 332 (798)
-|.|+-+ +.+.++ +...=||||||+.-| .--..|.|.-+++.|
T Consensus 114 ----teDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL---------~d~lvd~LLd~aaeG~n~vereGi 180 (423)
T COG1239 114 ----TEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL---------DDHLVDALLDVAAEGVNDVEREGI 180 (423)
T ss_pred ----CHHHHCCCCCHHHHHHCCCCCCCCCCHHHCCCCEEEEECCCCC---------CHHHHHHHHHHHHHCCCEEEECCE
T ss_conf ----0433004567999972683002775110035887987233435---------189999999999717740335750
Q ss_pred ------CEEEEEECCHHHHHHHHHCCHHHHHHC-EEEEECCCC-HHHHHHHHHHHHHHHHH----HCCCEEC-CHHHHHH
Q ss_conf ------603887304899999852011143200-144306878-68999999861276654----1035121-1178999
Q gi|254780163|r 333 ------AVRCIGSTTYSEYRQFFEKDKALVRRF-QKIDVSEPS-IEDAIEIVKGIKPYFEE----HHQLRYS-KEAIRAA 399 (798)
Q Consensus 333 ------~~~~IgatT~~ey~~~~e~d~al~rrF-~~i~v~ep~-~~~~~~iL~~~~~~ye~----~h~v~~~-~~al~~a 399 (798)
.+-+||.+.|+|= +--+-|-.|| -.|.+..|+ .++-+.|.+.- ..|+. |+...-. ..++..-
T Consensus 181 si~hpa~fvligTmNPEeG----eLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~-~~f~~~Pe~f~~~~~~~~~~lR~~ 255 (423)
T COG1239 181 SIRHPARFLLIGTMNPEEG----ELRPQLLDRFGLEVDTHYPLDLEERVEIIRRR-LAFEAVPEAFLEKYADAQRALRAR 255 (423)
T ss_pred EECCCCCEEEEEECCCCCC----CCCHHHHHHHCCEEECCCCCCHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 3136761799964485446----63246675411156234788788889999998-875008299999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 9986542015556467988998653333211443221136578999866310245
Q gi|254780163|r 400 VQLSVRHFTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIASMNRS 454 (798)
Q Consensus 400 v~ls~ryi~~r~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~g 454 (798)
+-.+..-++.+.++|-+...+=++|++..+.. .+..+.-.++...++.|. |
T Consensus 256 ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g---~radi~~~r~a~a~aa~~-G 306 (423)
T COG1239 256 IIAARSLLSEVELDDDAETKIAELCARLAVDG---HRADIVVVRAAKALAALR-G 306 (423)
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHC-C
T ss_conf 99998446664676779999999999856578---742567899999998753-9
No 360
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=97.36 E-value=0.00024 Score=50.37 Aligned_cols=112 Identities=22% Similarity=0.323 Sum_probs=50.8
Q ss_pred EEEEECCCCHHHHHHHHHHH-----HHCCCCEEEEEH---HHHHCCCCCCHHCCCCCHHCCCCC---CCCCCHHH---HH
Q ss_conf 68861432003889999987-----304773377206---886124653011047800025644---43100355---51
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLA-----FALGVQLLRFDM---SEYMERHAVSRLIGAPPGYVGFGQ---GGILADSV---DQ 574 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la-----~~~~~~lir~dm---sey~e~~~vs~LiGappGYvG~~e---gg~Lte~v---r~ 574 (798)
+++|+||||||||-++-.|| .+....+|..|- .-.-.=-+.++++|.|- |..+.+ .-.+-+++ +.
T Consensus 3 vi~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~-~~~~~~~d~~~~~~~~l~~~~~ 81 (196)
T pfam00448 3 VILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERLGVPV-FGSGTGSDPAAVAFDAVEKAKA 81 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEE-EECCCCCCHHHHHHHHHHHHHH
T ss_conf 999989999988999999999999779928999758776889999999998639817-8148777878999999999884
Q ss_pred CCCEEEEECCHHHCCHH--HHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHH
Q ss_conf 58517774044550289--9999999877750217799776125429999424214553
Q gi|254780163|r 575 NPYSVVLLDEIEKSHPD--VLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEM 631 (798)
Q Consensus 575 ~P~sVvl~DEiEKAh~~--v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~ 631 (798)
+.|-+||.|--=.-|.+ -..-+-++++.. .=.+++++|.++.|.+.+
T Consensus 82 ~~~D~IlIDTaGr~~~d~~~~~el~~~~~~~----------~~~~~~LVl~a~~~~~~~ 130 (196)
T pfam00448 82 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVI----------APDEVLLVLDATTGQNAL 130 (196)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHC----------CCCCEEEEEECCCCCCHH
T ss_conf 6899999989998747677899999998522----------873028998567782137
No 361
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.35 E-value=0.0007 Score=47.03 Aligned_cols=93 Identities=24% Similarity=0.418 Sum_probs=59.3
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHC----CCCEEEE-EHHHHHCCCCCCHHCCCCCHH--CCCCCCCCCCHHHHHCCCEEE
Q ss_conf 068861432003889999987304----7733772-068861246530110478000--256444310035551585177
Q gi|254780163|r 508 GCYVFSGPTGVGKTEISKQLAFAL----GVQLLRF-DMSEYMERHAVSRLIGAPPGY--VGFGQGGILADSVDQNPYSVV 580 (798)
Q Consensus 508 g~flf~GptGvGKTelak~la~~~----~~~lir~-dmsey~e~~~vs~LiGappGY--vG~~egg~Lte~vr~~P~sVv 580 (798)
|-+|++||||.|||.+..++.... ..+.+.+ |=-||.-++..+-..-...|- ..|.+ .|-.++|+.| -||
T Consensus 2 GliLitG~TGSGKTTtl~all~~i~~~~~~~IiTiEDPiE~~~~~~~~~i~q~e~g~~~~sf~~--~lr~aLR~~P-DvI 78 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFEN--ALKAALRQDP-DVI 78 (198)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHCCCCCEEEEECCCCCCCCCHHH--HHHHHHHHCC-CEE
T ss_conf 3899989999979999999998536378836999647377523676448873330788637999--9999985488-857
Q ss_pred EECCHHHCCHHHHHHHHHHHHHHHC
Q ss_conf 7404455028999999998777502
Q gi|254780163|r 581 LLDEIEKSHPDVLNILLQIMDYGIL 605 (798)
Q Consensus 581 l~DEiEKAh~~v~~~llqild~G~l 605 (798)
++.|+- .++.....++.-..|++
T Consensus 79 ~vGEiR--d~et~~~al~aa~TGHl 101 (198)
T cd01131 79 LVGEMR--DLETIRLALTAAETGHL 101 (198)
T ss_pred ECCCCC--CHHHHHHHHHHHHCCCE
T ss_conf 527778--99999999999971993
No 362
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.31 E-value=0.0059 Score=40.37 Aligned_cols=146 Identities=15% Similarity=0.176 Sum_probs=71.5
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHCC--CCCHHHHEEEEEEEEHHHHHC--CCCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 7874896676411668999999998548--988345201445540467530--634312378999999987203898399
Q gi|254780163|r 225 KNNPLYVGDPGVGKTAIAEGFAKQIVDG--MVPDILLGARIFSLDMGNLIA--GTRYRGDFEERIKKIVKEIESYANAIL 300 (798)
Q Consensus 225 KNn~~lvG~~gvGktaive~la~~i~~~--~vp~~l~~~~i~~ld~~~l~a--g~~~rg~fe~r~~~~~~~~~~~~~~il 300 (798)
++|.+|||-||+|||+|-.-||+++-.. |....+.. -+..++..+.+ |-.|--+.|. .++.++.. ++.
T Consensus 2 ~~~I~LiG~mGsGKstiGk~LA~~L~~~fiD~D~~Ie~--~~g~sI~eif~~~Ge~~FR~~E~---~~l~~l~~-~~~-- 73 (172)
T PRK03731 2 TQPLFLVGPRGCGKTTVGMALAQALGYRFVDTDLWLQS--TLQMTVAEIVEREGWAGFRARES---AALEAVTA-PST-- 73 (172)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHH--HHCCCHHHHHHHHCHHHHHHHHH---HHHHHHCC-CCE--
T ss_conf 99889988999988999999999859997978699998--83989999999839899999999---99998427-882--
Q ss_pred EECCHHHHHCCCCCCCCC-CCHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHH
Q ss_conf 973616630155444344-77788887663-0266038873048999998520111432001443068786899999986
Q gi|254780163|r 301 YIDEIHTLVGAGSASGIS-VDASNLLKPAL-SSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKG 378 (798)
Q Consensus 301 fideih~ligag~~~g~~-~d~an~lkP~L-~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~ 378 (798)
+| +++||. ++..|+ -+| ..|-+=.+ -++++.--+.+..|+--. -.|..-..+..+.-..++..
T Consensus 74 -------VI---stGGG~v~~~~n~--~~L~~~g~vv~L-~~~~~~l~~Rl~~~~~~~--~RPll~~~~~~~~i~~l~~~ 138 (172)
T PRK03731 74 -------VV---ATGGGIILTEENR--AFMRNNGIVIYL-CAPVSVLANRLEADPEED--QRPTLTGKPLSEEVAEVLAE 138 (172)
T ss_pred -------EE---EECCCCCCCHHHH--HHHHHCCEEEEE-ECCHHHHHHHHHCCCCCC--CCCCCCCCCHHHHHHHHHHH
T ss_conf -------89---8078642689999--999968999999-799999999981387789--89878899879999999999
Q ss_pred HHHHHHHHCCCEECC
Q ss_conf 127665410351211
Q gi|254780163|r 379 IKPYFEEHHQLRYSK 393 (798)
Q Consensus 379 ~~~~ye~~h~v~~~~ 393 (798)
-.+.|++...+.++.
T Consensus 139 R~~~Y~~~a~~ii~~ 153 (172)
T PRK03731 139 RDALYREVAHHIIDA 153 (172)
T ss_pred HHHHHHHHCCEEECC
T ss_conf 999999848998879
No 363
>KOG0743 consensus
Probab=97.30 E-value=0.0068 Score=39.97 Aligned_cols=128 Identities=28% Similarity=0.364 Sum_probs=82.1
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 67787489667641166899999999854898834520144554046753063431237899999998720389839997
Q gi|254780163|r 223 RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYI 302 (798)
Q Consensus 223 R~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfi 302 (798)
-=|..=+|-|+||.|||+.|-.+|.- -+.-||-|++++. +...| |+.++.... ++.||.|
T Consensus 233 awKRGYLLYGPPGTGKSS~IaAmAn~----------L~ydIydLeLt~v------~~n~d--Lr~LL~~t~--~kSIivI 292 (457)
T KOG0743 233 AWKRGYLLYGPPGTGKSSFIAAMANY----------LNYDIYDLELTEV------KLDSD--LRHLLLATP--NKSILLI 292 (457)
T ss_pred CCCCCCEEECCCCCCHHHHHHHHHHH----------CCCCEEEEEECCC------CCCHH--HHHHHHHCC--CCCEEEE
T ss_conf 50004120479999888999999720----------5873677440023------68389--999997289--9718999
Q ss_pred CCHHHHHC---CCCC--C-----CCCCCHHHH---HHHHH-CCCCEEEEEECCHHHHHHHHHC-CHHHHH--HCEE-EEE
Q ss_conf 36166301---5544--4-----344777888---87663-0266038873048999998520-111432--0014-430
Q gi|254780163|r 303 DEIHTLVG---AGSA--S-----GISVDASNL---LKPAL-SSGAVRCIGSTTYSEYRQFFEK-DKALVR--RFQK-IDV 364 (798)
Q Consensus 303 deih~lig---ag~~--~-----g~~~d~an~---lkP~L-~rg~~~~IgatT~~ey~~~~e~-d~al~r--rF~~-i~v 364 (798)
.+|-+=+- .... . ++.+..|-+ +--.. +-|+=|+|--||. |.|| ||||-| |-.. |.+
T Consensus 293 EDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTN-----h~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743 293 EDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTN-----HKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCCEEEEEECC-----CHHHCCHHHCCCCCCEEEEEC
T ss_conf 612432304434555664546776606647756641343004887349999468-----710068866288752256672
Q ss_pred CCCCHHHHHHHH
Q ss_conf 687868999999
Q gi|254780163|r 365 SEPSIEDAIEIV 376 (798)
Q Consensus 365 ~ep~~~~~~~iL 376 (798)
.=-+.+ ++++|
T Consensus 368 gyCtf~-~fK~L 378 (457)
T KOG0743 368 GYCTFE-AFKTL 378 (457)
T ss_pred CCCCHH-HHHHH
T ss_conf 669879-99999
No 364
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.29 E-value=0.0016 Score=44.43 Aligned_cols=336 Identities=19% Similarity=0.193 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCC----CEEEE-CCCCCHHHHHHHHHHHHH----HCCCCCHHHHEEEEEEEEHHHHHC--
Q ss_conf 2221789999999986226778----74896-676411668999999998----548988345201445540467530--
Q gi|254780163|r 205 ILVGRHEEINRTIQILCRRSKN----NPLYV-GDPGVGKTAIAEGFAKQI----VDGMVPDILLGARIFSLDMGNLIA-- 273 (798)
Q Consensus 205 PVIGRd~EI~riiqIL~RR~KN----n~~lv-G~~gvGktaive~la~~i----~~~~vp~~l~~~~i~~ld~~~l~a-- 273 (798)
-+-|||+|.+.+-.-+--.-|+ +.+.| |-||.||||-|....+.+ .+|++|++ ..++++...|..
T Consensus 268 ~lpcRe~E~~~I~~Fie~~i~q~GtG~cLYISGVPGTGKTATV~eVIr~L~~~~~~~~lp~F----~fVEINGMkLt~P~ 343 (650)
T PTZ00112 268 YILGREKEAKEIRTFLETGIKQGGTGQILYISGVPGTGKTATVYMVIKELQNKKLKGQLPWF----NLFEINGVNLVHPN 343 (650)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCC----EEEEECCEECCCHH
T ss_conf 47770789999999998641168866569997899998003699999999999970899981----59997363779878
Q ss_pred -----------CCCCCCHHHHHHHHHHHHH-C-CCCCEEEEECCHHHHHCCCCCCCCCCCHHHHH-HHHHCCCCEEEEE-
Q ss_conf -----------6343123789999999872-0-38983999736166301554443447778888-7663026603887-
Q gi|254780163|r 274 -----------GTRYRGDFEERIKKIVKEI-E-SYANAILYIDEIHTLVGAGSASGISVDASNLL-KPALSSGAVRCIG- 338 (798)
Q Consensus 274 -----------g~~~rg~fe~r~~~~~~~~-~-~~~~~ilfideih~ligag~~~g~~~d~an~l-kP~L~rg~~~~Ig- 338 (798)
|-+-. .... --.+++.. . .....||.+||+..|+-. .. .. .=|++ -|-+....|-+||
T Consensus 344 qaY~~L~e~Ltg~k~~-~~~~-A~~lL~k~F~~~r~p~VlLvDELD~LvTk---kQ-~V-lYNLFdWPT~~~SkLIVIaI 416 (650)
T PTZ00112 344 AAYRVFYKKLFNKKPP-NALN-SYKELDKLFNNNRTPSILIVDEADYIVTK---TQ-KV-LFTLFDWPTKKNSKLILIII 416 (650)
T ss_pred HHHHHHHHHHHCCCCC-CHHH-HHHHHHHHHCCCCCCEEEEECHHHHHHHC---CC-CE-EEECCCCCCCCCCEEEEEEE
T ss_conf 8999999998489888-6789-99999998268997189997157777636---77-45-77736688988870799998
Q ss_pred ECCHHHHHHHHHCCHHHHHH--CEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 30489999985201114320--0144306878689999998612766541035121117899999865420155564679
Q gi|254780163|r 339 STTYSEYRQFFEKDKALVRR--FQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKA 416 (798)
Q Consensus 339 atT~~ey~~~~e~d~al~rr--F~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkA 416 (798)
|-|.+==.+.. +-...| ++++.-.+=+.++-.+|+.. |++.. -.+.++||..|.+--+-+=.| -.+|
T Consensus 417 ANTMDLPERL~---~RVsSRLGltRltF~PYt~~QL~eII~s---RL~~~--~~f~~dAIQl~ARKVAavSGD---ARRA 485 (650)
T PTZ00112 417 SNTMDLPYKMK---PSCRSRLAFGRLVFSPYKYQQIEKVIKE---RLENC--EIIDHTALQLCARRVTNYSGD---MRKA 485 (650)
T ss_pred EECCCCCHHHH---HHHHHHCCCCEECCCCCCHHHHHHHHHH---HHCCC--CCCCHHHHHHHHHHHHHHCCH---HHHH
T ss_conf 50678606566---6655522885004399899999999999---86267--778878999998888750314---8999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHCCHH--HHHHHHCCHHHHHHHCHHHHHH-HHHHHH
Q ss_conf 8899865333321144322113657899986631024531011100112--3342100002466534589999-999998
Q gi|254780163|r 417 IDVIDEAGASQILQPLSKRRKFITEKDIKKTIASMNRSIHTTSFSRDDD--SVLSNLEKNLGTVVYGQEEAIK-KLSSSI 493 (798)
Q Consensus 417 idllDea~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~gip~~~~~~~~~--~~l~~l~~~l~~~v~GQ~~ai~-~v~~~i 493 (798)
.|+-. + +++. .+...|+..|+..+.-. ...-|+......-+ -+++-.--.|.-+++|+.-|.. .|.+..
T Consensus 486 LdICR----R-AvE~--~~~~ki~~~~i~~a~n~-~~ns~~~~al~~~~~~~k~ll~~i~l~lk~~~~~ia~~~~v~~~~ 557 (650)
T PTZ00112 486 LQICK----L-AFEN--KNGGKITPRDMTRASNM-VLDSPLTNALNYLSWPFKCLLVCIILELKDVQLFIAPAKKVYNRF 557 (650)
T ss_pred HHHHH----H-HHHH--CCCCEEEHHHHHHHHHH-HHCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999----9-9973--56873424899999888-854088999985557899999999988645010016899999999
Q ss_pred HHHHCCCCCCCCC-CCEEEEECCCCHHHHHHHHHHHHHC--CCCEEEEEHHHHH---CCCCCCHHCCCCCHHCCCC---C
Q ss_conf 7752044565787-4068861432003889999987304--7733772068861---2465301104780002564---4
Q gi|254780163|r 494 KIARAGLSDPNKP-IGCYVFSGPTGVGKTEISKQLAFAL--GVQLLRFDMSEYM---ERHAVSRLIGAPPGYVGFG---Q 564 (798)
Q Consensus 494 ~~~~~gl~~~~rP-~g~flf~GptGvGKTelak~la~~~--~~~lir~dmsey~---e~~~vs~LiGappGYvG~~---e 564 (798)
| |+-.-..| +|... ..-.=|-.|-+.+.-|- =.+.| |+-+.-. -++.|+--|.---|=+|-+ +
T Consensus 558 ---r-~m~~~~~~~i~~~~---~~~~fk~~l~~~~~~gii~~~p~v-f~~~s~~~k~~~~~v~~~i~~e~gd~gi~~~v~ 629 (650)
T PTZ00112 558 ---R-GMMEVLGPYIGMCS---CKESFKILLDSLVKMGIISLEPTV-FNSSSLTDKKTRVQVSPDIDEELGDMGIELNVD 629 (650)
T ss_pred ---H-HHHHHHHHHHHHCC---CHHHHHHHHHHHHHCCEEEEECEE-ECCCCCCCCCEEEECCHHHHHHCCCCCEEEEEC
T ss_conf ---9-99986146553022---488999999998756748840346-413345687414532720211304563167403
Q ss_pred CCCCCHHHHHCCCE
Q ss_conf 43100355515851
Q gi|254780163|r 565 GGILADSVDQNPYS 578 (798)
Q Consensus 565 gg~Lte~vr~~P~s 578 (798)
-|++..|+-+.|||
T Consensus 630 ~~~iital~kdp~~ 643 (650)
T PTZ00112 630 TGLIITALMKDPYW 643 (650)
T ss_pred HHHHHHHHHHCHHH
T ss_conf 54789988508557
No 365
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.28 E-value=0.00054 Score=47.84 Aligned_cols=31 Identities=35% Similarity=0.431 Sum_probs=19.2
Q ss_pred EEEEECCCCHHHHHHHHHHH-----HHCCCCEEEEE
Q ss_conf 68861432003889999987-----30477337720
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLA-----FALGVQLLRFD 539 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la-----~~~~~~lir~d 539 (798)
+++|+||||||||-+.-.|| .+....+|..|
T Consensus 2 Vi~lvGptGvGKTTTiaKLA~~~~~~~~kV~lit~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 999989999988999999999999769928999748
No 366
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.27 E-value=0.0015 Score=44.63 Aligned_cols=106 Identities=19% Similarity=0.225 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH-----HCCCCEEEEEH---HHHHCCCCCCHHCC
Q ss_conf 89999999998775204456578740688614320038899999873-----04773377206---88612465301104
Q gi|254780163|r 483 EEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAF-----ALGVQLLRFDM---SEYMERHAVSRLIG 554 (798)
Q Consensus 483 ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~-----~~~~~lir~dm---sey~e~~~vs~LiG 554 (798)
++.++.+.+.+....-......++.-+++|+||+|+|||-++-.||. +....++..|- .-+-.=-..++.+|
T Consensus 51 ~~vi~~l~~~l~~~~~~~~~~~~~~~vI~lvG~~G~GKTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~eQLk~~a~~l~ 130 (270)
T PRK06731 51 EEVIEYILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIG 130 (270)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 99999999999875076654679981899988898988999999999998679908999838888889999999999819
Q ss_pred CCCHHCCCCCCCCCCHHHH----HCCCEEEEECCHHHCCH
Q ss_conf 7800025644431003555----15851777404455028
Q gi|254780163|r 555 APPGYVGFGQGGILADSVD----QNPYSVVLLDEIEKSHP 590 (798)
Q Consensus 555 appGYvG~~egg~Lte~vr----~~P~sVvl~DEiEKAh~ 590 (798)
-|- |+.+++ ..+..++. .+-+-|||.|--=.-|.
T Consensus 131 v~~-~~~~~~-~~~~~~~~~~~~~~~~DvilIDTAGR~~~ 168 (270)
T PRK06731 131 FEV-IAVRDE-AAMTRALTYFKEEARVDYILIDTAGKNYR 168 (270)
T ss_pred CCE-ECCCCH-HHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 953-545887-89999999999976999999979998714
No 367
>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=97.27 E-value=0.009 Score=39.06 Aligned_cols=178 Identities=22% Similarity=0.340 Sum_probs=122.4
Q ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC-----CCE----EEECCCCCHHHHHHHHHHHHHHCCCCCH
Q ss_conf 0356544258877548611222178999999998622677-----874----8966764116689999999985489883
Q gi|254780163|r 186 ALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSK-----NNP----LYVGDPGVGKTAIAEGFAKQIVDGMVPD 256 (798)
Q Consensus 186 ~LdkFg~DLTe~AreGKLDPVIGRd~EI~riiqIL~RR~K-----Nn~----~lvG~~gvGktaive~la~~i~~~~vp~ 256 (798)
.|++.-++|.- |.||--|=.||--++-|=--|.+ .+| ...|.||.|||+++-.+|+-+..- -
T Consensus 16 ~l~~l~~~l~G------l~Pvk~r~~~~a~lllv~~~r~~~~l~~~~P~lhm~ftG~PGtGkttva~~m~~~l~~l---G 86 (284)
T TIGR02880 16 VLDQLDRELIG------LKPVKTRIREIAALLLVERLRQKLGLASAAPSLHMSFTGNPGTGKTTVALRMAQILHRL---G 86 (284)
T ss_pred HHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC---C
T ss_conf 99987676216------41588999999999999999987422104883267751689872489999999999871---5
Q ss_pred HHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHC--CCCE
Q ss_conf 45201445540467530634312378999999987203898399973616630155444344777888876630--2660
Q gi|254780163|r 257 ILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALS--SGAV 334 (798)
Q Consensus 257 ~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~--rg~~ 334 (798)
.++.-.+++..-..|+. .|-|.---+-|.+++.+. | -+|||||..-+--.-....-+..|-.+|-..+. |.++
T Consensus 87 y~r~G~~~~~trddlvG--qy~GhtaPktke~lk~a~--G-Gvlfideayyly~P~nerdyG~eaieillq~men~r~~l 161 (284)
T TIGR02880 87 YVRKGHLVSVTRDDLVG--QYIGHTAPKTKEVLKRAM--G-GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDL 161 (284)
T ss_pred CCCCCCEEEEEHHHHHH--HHHCCCCCHHHHHHHHHC--C-CEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCE
T ss_conf 40036267853001311--221257722689998742--8-736642203321776410223799999999872365537
Q ss_pred EEEEECCHHHHHHHHHCCHHHHHHC-EEEEECCCCHHHHHHHHH
Q ss_conf 3887304899999852011143200-144306878689999998
Q gi|254780163|r 335 RCIGSTTYSEYRQFFEKDKALVRRF-QKIDVSEPSIEDAIEIVK 377 (798)
Q Consensus 335 ~~IgatT~~ey~~~~e~d~al~rrF-~~i~v~ep~~~~~~~iL~ 377 (798)
-+|-|--.+....+|+.+|.|..|. +.|..+.-+.++-..|-.
T Consensus 162 vvi~aGy~~rm~~f~~snPG~~sr~a~h~~fPdy~~~~l~~ia~ 205 (284)
T TIGR02880 162 VVILAGYKDRMDSFFESNPGLSSRVAHHVDFPDYSEEELLAIAE 205 (284)
T ss_pred EEEEECCHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 88871707888887511786246776431588877678999999
No 368
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=97.27 E-value=0.0013 Score=45.15 Aligned_cols=142 Identities=23% Similarity=0.432 Sum_probs=98.1
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCC--EEEECCCCCHHHHHHHHHHHH----------HHCCCCCHHHHEEEEEEEEHHH
Q ss_conf 1122217899999999862267787--489667641166899999999----------8548988345201445540467
Q gi|254780163|r 203 VDILVGRHEEINRTIQILCRRSKNN--PLYVGDPGVGKTAIAEGFAKQ----------IVDGMVPDILLGARIFSLDMGN 270 (798)
Q Consensus 203 LDPVIGRd~EI~riiqIL~RR~KNn--~~lvG~~gvGktaive~la~~----------i~~~~vp~~l~~~~i~~ld~~~ 270 (798)
+.=+||++.++.|+.+..-|=--+| ++|.||.|.||=-++.++-+. |.-+-+|+.|-...+|--.=
T Consensus 141 ~~Gli~~~~~m~kic~tIekvA~sd~TvllLGESGTGKEV~ArA~H~~S~R~~~~FVAINCAAIPEnLLEsELFGyEK-- 218 (451)
T TIGR02915 141 LEGLITSSPGMQKICRTIEKVAPSDITVLLLGESGTGKEVLARALHELSDRKDKRFVAINCAAIPENLLESELFGYEK-- 218 (451)
T ss_pred CCCEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHCCCC--
T ss_conf 365220685067898886521200001301046671178999898420578977734441674575246677603410--
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHH----------------H-CCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 53063431237899999998720389839997361663----------------0-155444344777888876630266
Q gi|254780163|r 271 LIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTL----------------V-GAGSASGISVDASNLLKPALSSGA 333 (798)
Q Consensus 271 l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~l----------------i-gag~~~g~~~d~an~lkP~L~rg~ 333 (798)
|-|-.=+|..+-.++-+..==||.|||=-| | =-|+-..-+.|
T Consensus 219 --------GAFTGA~k~T~GKIE~A~~GTLFLDEIGDLP~~LQAKLLRFLQErVIER~GGR~eIPVD------------- 277 (451)
T TIGR02915 219 --------GAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVD------------- 277 (451)
T ss_pred --------HHHHHHHCCCCCCEEEECCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC-------------
T ss_conf --------12422003477616750688301111220676689999987546663105887245614-------------
Q ss_pred EEEEEECCHHHHHHHHHCCHHHHHHCEE---EEECCCC
Q ss_conf 0388730489999985201114320014---4306878
Q gi|254780163|r 334 VRCIGSTTYSEYRQFFEKDKALVRRFQK---IDVSEPS 368 (798)
Q Consensus 334 ~~~IgatT~~ey~~~~e~d~al~rrF~~---i~v~ep~ 368 (798)
+|+|+||-.+ -.++|+...-=+.-|.+ |.|.=|.
T Consensus 278 VRvvCATnqd-L~~~i~eg~FREDLfYRl~Eisi~iPP 314 (451)
T TIGR02915 278 VRVVCATNQD-LKKMIAEGTFREDLFYRLAEISITIPP 314 (451)
T ss_pred EEEEECCCHH-HHHHHHCCCCCCCCEEEEEEEEEECCC
T ss_conf 2675032246-899985489720001346667862588
No 369
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=97.24 E-value=0.0013 Score=45.03 Aligned_cols=175 Identities=23% Similarity=0.394 Sum_probs=92.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHC--CCCCCEEEECCCCCHHHHHHHHHHHHHHCCC--------------CCHHHHEEEEEE
Q ss_conf 611222178999999998622--6778748966764116689999999985489--------------883452014455
Q gi|254780163|r 202 KVDILVGRHEEINRTIQILCR--RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGM--------------VPDILLGARIFS 265 (798)
Q Consensus 202 KLDPVIGRd~EI~riiqIL~R--R~KNn~~lvG~~gvGktaive~la~~i~~~~--------------vp~~l~~~~i~~ 265 (798)
.+|-+||...++.++++..-| ++-.++++.||.|+||-- +|+.|-+.. .|+.|-...+|.
T Consensus 243 ~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKEl----fA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFG 318 (560)
T COG3829 243 TFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKEL----FARAIHNLSPRANGPFIAINCAAIPETLLESELFG 318 (560)
T ss_pred CHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHH----HHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHC
T ss_conf 61002058999999999998633899828995378866899----99998744843479807876433888888888727
Q ss_pred EEHHHHHCCCCC---CCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCH---HHHHHHHHCCC-------
Q ss_conf 404675306343---12378999999987203898399973616630155444344777---88887663026-------
Q gi|254780163|r 266 LDMGNLIAGTRY---RGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDA---SNLLKPALSSG------- 332 (798)
Q Consensus 266 ld~~~l~ag~~~---rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~---an~lkP~L~rg------- 332 (798)
-.-|+. .||+- .|-||. +++. -||.|||--| .. +-+|. +|.-+
T Consensus 319 ye~GAF-TGA~~~GK~GlfE~----------A~gG-TLFLDEIgem-----------pl~LQaKLLR-VLQEkei~rvG~ 374 (560)
T COG3829 319 YEKGAF-TGASKGGKPGLFEL----------ANGG-TLFLDEIGEM-----------PLPLQAKLLR-VLQEKEIERVGG 374 (560)
T ss_pred CCCCCC-CCCCCCCCCCCEEE----------CCCC-EEEEHHHCCC-----------CHHHHHHHHH-HHHHCEEEECCC
T ss_conf 677642-46445799760544----------1698-3771232039-----------9899999999-875353785378
Q ss_pred ------CEEEEEECCHHHHHHHHHCCHHHHHHC---EEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHH
Q ss_conf ------603887304899999852011143200---14430687868999999861276654103512111789999986
Q gi|254780163|r 333 ------AVRCIGSTTYSEYRQFFEKDKALVRRF---QKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLS 403 (798)
Q Consensus 333 ------~~~~IgatT~~ey~~~~e~d~al~rrF---~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls 403 (798)
++|+|+||-. .-.+.+++-.--+.-| .++.|.=|..-+-..=+..+.. .-.-+++
T Consensus 375 t~~~~vDVRIIAATN~-nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~---------------~Fl~k~s 438 (560)
T COG3829 375 TKPIPVDVRIIAATNR-NLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAE---------------YFLDKFS 438 (560)
T ss_pred CCCEEEEEEEEECCCC-CHHHHHHCCCCHHHHEEEECEEEECCCCCCCCCCHHHHHHH---------------HHHHHHH
T ss_conf 8753567899942575-89999863961655300304011147772338201899999---------------9999999
Q ss_pred HHHCCCCC-CHHHHHHHH
Q ss_conf 54201555-646798899
Q gi|254780163|r 404 VRHFTSRK-LPDKAIDVI 420 (798)
Q Consensus 404 ~ryi~~r~-lPdkAidll 420 (798)
.+|=.+.. +.+.|+++|
T Consensus 439 ~~~~~~v~~ls~~a~~~L 456 (560)
T COG3829 439 RRYGRNVKGLSPDALALL 456 (560)
T ss_pred HHCCCCCCCCCHHHHHHH
T ss_conf 872887666899999999
No 370
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.22 E-value=0.0072 Score=39.75 Aligned_cols=212 Identities=17% Similarity=0.262 Sum_probs=113.2
Q ss_pred HHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH------HHCCCCEEEEEHHHHHCCC
Q ss_conf 0246653458999999999877520445657874068861432003889999987------3047733772068861246
Q gi|254780163|r 474 NLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLA------FALGVQLLRFDMSEYMERH 547 (798)
Q Consensus 474 ~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la------~~~~~~lir~dmsey~e~~ 547 (798)
.|+.-|--...+.....+.|.|.- .. ...| +|+.||||.||+-||+.+- ..+..+++-+||....-..
T Consensus 181 ~lksgiatrnp~fnrmieqierva--~r-sr~p---~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~ 254 (531)
T COG4650 181 FLKSGIATRNPHFNRMIEQIERVA--IR-SRAP---ILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDT 254 (531)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHH--HH-CCCC---EEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCH
T ss_conf 997333215857788999999998--61-4697---68646887436689999999998887537862788630004752
Q ss_pred CCCHHCCCCCH-HCCCCC--CCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCC-CCCCCEECCCCEEEEEE
Q ss_conf 53011047800-025644--431003555158517774044550289999999987775021-77997761254299994
Q gi|254780163|r 548 AVSRLIGAPPG-YVGFGQ--GGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILT-DQSGKKISFRNVILIMT 623 (798)
Q Consensus 548 ~vs~LiGappG-YvG~~e--gg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~lt-d~~Gr~vdf~n~iii~T 623 (798)
+.|-|.|--.| |.|-.+ .|+| |-.--..+++|||-.-..|-+..||...++-+.- =+..|.|+-.--+|-
T Consensus 255 amsalfghvkgaftga~~~r~gll----rsadggmlfldeigelgadeqamllkaieekrf~pfgsdr~v~sdfqlia-- 328 (531)
T COG4650 255 AMSALFGHVKGAFTGARESREGLL----RSADGGMLFLDEIGELGADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIA-- 328 (531)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHH----CCCCCCEEEHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH--
T ss_conf 889987640013146334554424----33778657567433247527889999988712677887400031067764--
Q ss_pred CCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCC----HHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 24214553303689882111488999998728878817768289628899----99999999999999999998669889
Q gi|254780163|r 624 TNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLS----SDIIRQVVHKFIMKLELQLQEKGISF 699 (798)
Q Consensus 624 sN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~----~~~~~~i~~~~l~~l~~~l~~~~i~l 699 (798)
| ...+.-.-.....|+..+..||+ .-.|.--. .+++.--++.+| .+..+..|-++
T Consensus 329 ---g--------------tvrdlrq~vaeg~fredl~arin-lwtf~lpgl~qr~ediepnldyel---erha~~~g~~v 387 (531)
T COG4650 329 ---G--------------TVRDLRQLVAEGKFREDLYARIN-LWTFTLPGLRQRQEDIEPNLDYEL---ERHASLTGDSV 387 (531)
T ss_pred ---H--------------HHHHHHHHHHCCCHHHHHHHHHH-EEEEECCCCCCCCCCCCCCCCHHH---HHHHHHHCCEE
T ss_conf ---1--------------18889999863613787887631-135406631157000698834789---99888618635
Q ss_pred EECHHHHHHHHHCCCCCCC
Q ss_conf 9988999999971898101
Q gi|254780163|r 700 HFSEEVINWLVSHGYDVKM 718 (798)
Q Consensus 700 ~~~~~~~~~l~~~~~~~~~ 718 (798)
.+.-++...-..-..+|+-
T Consensus 388 rfntearra~l~fa~spqa 406 (531)
T COG4650 388 RFNTEARRAWLAFATSPQA 406 (531)
T ss_pred EEEHHHHHHHHHHCCCCHH
T ss_conf 5207988889975058301
No 371
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0028 Score=42.72 Aligned_cols=134 Identities=25% Similarity=0.385 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH----------------HCCCCCH--HHHEEE----
Q ss_conf 222178999999998622677874896676411668999999998----------------5489883--452014----
Q gi|254780163|r 205 ILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQI----------------VDGMVPD--ILLGAR---- 262 (798)
Q Consensus 205 PVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i----------------~~~~vp~--~l~~~~---- 262 (798)
-|+|-+ +-+|.++|=+=-.+ |-+++|+||.|||-++..+.... +.++... .+.-.|
T Consensus 180 DV~GQ~-~AKrAleiAAAGgH-nLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~~~~~~~~~~~~~rPFr~ 257 (490)
T COG0606 180 DVKGQE-QAKRALEIAAAGGH-NLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRPFRA 257 (490)
T ss_pred HHCCCH-HHHHHHHHHHHCCC-CEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEECCCCC
T ss_conf 643849-99999999984388-6787569988656764231025999870888999888763543246786411078768
Q ss_pred -EEEEEHHHHHCCC-CCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEC
Q ss_conf -4554046753063-43123789999999872038983999736166301554443447778888766302660388730
Q gi|254780163|r 263 -IFSLDMGNLIAGT-RYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGST 340 (798)
Q Consensus 263 -i~~ld~~~l~ag~-~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~Igat 340 (798)
=.+.++.+|+-|- .|| -.|+..+-|=|||+||+--. .-++-|-|.-.|..|++.+--+.
T Consensus 258 PHHsaS~~aLvGGG~~p~----------PGeIsLAH~GVLFLDElpef---------~~~iLe~LR~PLE~g~i~IsRa~ 318 (490)
T COG0606 258 PHHSASLAALVGGGGVPR----------PGEISLAHNGVLFLDELPEF---------KRSILEALREPLENGKIIISRAG 318 (490)
T ss_pred CCCCCHHHHHHCCCCCCC----------CCCEEEECCCEEEEECCCHH---------HHHHHHHHHCCCCCCCEEEEECC
T ss_conf 874022889737899889----------87354303877886144210---------59999997374125817999758
Q ss_pred CHHHHHHHHHCCHHHHHHCEEEEECCCCH
Q ss_conf 48999998520111432001443068786
Q gi|254780163|r 341 TYSEYRQFFEKDKALVRRFQKIDVSEPSI 369 (798)
Q Consensus 341 T~~ey~~~~e~d~al~rrF~~i~v~ep~~ 369 (798)
..-+|.- |||.|----|++
T Consensus 319 ~~v~ypa----------~Fqlv~AmNpcp 337 (490)
T COG0606 319 SKVTYPA----------RFQLVAAMNPCP 337 (490)
T ss_pred CEEEEEE----------EEEEHHHCCCCC
T ss_conf 7168721----------267752239997
No 372
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.22 E-value=0.0045 Score=41.27 Aligned_cols=122 Identities=16% Similarity=0.148 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEEHHHHHCCCCCCHHCCCCCHHC
Q ss_conf 58999999999877520445657874068861432003889999987304-77337720688612465301104780002
Q gi|254780163|r 482 QEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL-GVQLLRFDMSEYMERHAVSRLIGAPPGYV 560 (798)
Q Consensus 482 Q~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~-~~~lir~dmsey~e~~~vs~LiGappGYv 560 (798)
+++.+..+.++++.. |---.+||.||.|+|||.+|+.+|... ...-...+.. ..+..+. .+-....-.
T Consensus 3 ~e~iv~~L~nai~~~--------klsHAYLF~G~~G~Gk~~~a~~~a~~l~~~~~~~~~~~--~~~~~~~-~id~~~~~i 71 (303)
T PRK07132 3 DNNIIKSLDNLAKQN--------KISHSFLLKSNYNNDLDESILYFLNKFNNLQSLNLNLE--ELPYNIF-LFDIFDEDL 71 (303)
T ss_pred CHHHHHHHHHHHHCC--------CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCC--CCCCCCE-EECCCCCCH
T ss_conf 038999999999849--------97616886789986799999999999729987888754--5653230-413322200
Q ss_pred CCCCCCCCCHHHHHCC-----CEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECC
Q ss_conf 5644431003555158-----5177740445502899999999877750217799776125429999424
Q gi|254780163|r 561 GFGQGGILADSVDQNP-----YSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTN 625 (798)
Q Consensus 561 G~~egg~Lte~vr~~P-----~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN 625 (798)
.-+++-.+.+.+..+| |-|+.+||+|+..++-+|.||..|+|- =.|+++|++|+
T Consensus 72 ~~~~i~~~i~~~~~~~~~~~~~Kv~IIdea~~lt~~A~NaLLKtLEEP-----------p~~~~fil~t~ 130 (303)
T PRK07132 72 SKEEFLSAIEKFSFSSFVSNQKKILIIKNIEKTSNSSLNALLKTIEEP-----------SKNTYFLLTTK 130 (303)
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHCCHHHHHHHHHHCCCC-----------CCCEEEEEEEC
T ss_conf 168899999999736655687069998165533999999999870389-----------86848999728
No 373
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.21 E-value=0.0016 Score=44.52 Aligned_cols=183 Identities=19% Similarity=0.273 Sum_probs=103.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEE
Q ss_conf 53035654425887754861122217899999999862267787489667641166899999999854898834520144
Q gi|254780163|r 184 FPALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARI 263 (798)
Q Consensus 184 ~~~LdkFg~DLTe~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i 263 (798)
||.|...-..|...-.+|++- +--++.|++|+||++++..+|+.+.-.+-+..-.|
T Consensus 5 YPWl~~~~~~l~~~~~~~rl~---------------------HA~L~~g~~G~Gk~~la~~la~~LlC~~~~~~~Cg--- 60 (319)
T PRK06090 5 YPWLVPVWQNWKSGLDAERIP---------------------GALLLQSDEGLGVESLVELFSHALLCQNYQSEACG--- 60 (319)
T ss_pred CCCCHHHHHHHHHHHHCCCCC---------------------CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCC---
T ss_conf 988379999999999869963---------------------06766799985799999999999808999999887---
Q ss_pred EEEEHHHHHCCCC---------CCCH--HHHHHHHHHHHHC----CCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 5540467530634---------3123--7899999998720----38983999736166301554443447778888766
Q gi|254780163|r 264 FSLDMGNLIAGTR---------YRGD--FEERIKKIVKEIE----SYANAILYIDEIHTLVGAGSASGISVDASNLLKPA 328 (798)
Q Consensus 264 ~~ld~~~l~ag~~---------~rg~--fe~r~~~~~~~~~----~~~~~ilfideih~ligag~~~g~~~d~an~lkP~ 328 (798)
..-+-..+.||+- -.|. -=+-++.+.+.+. ..+.-|.+||+.|.+ +..|+|-|--.
T Consensus 61 ~C~sC~l~~~g~HPD~~~i~pe~~~k~I~vd~IR~l~~~~~~~~~~g~~KV~iI~~ae~m---------~~~AaNALLKt 131 (319)
T PRK06090 61 FCHSCELMKSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQESSQLGGYRLFVIEPADAM---------NESASNALLKT 131 (319)
T ss_pred CCHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHC---------CHHHHHHHHHH
T ss_conf 787799987589998236612335676879999999999754521069369998144434---------99999999998
Q ss_pred HC--CCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHH
Q ss_conf 30--2660388730489999985201114320014430687868999999861276654103512111789999986542
Q gi|254780163|r 329 LS--SGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRH 406 (798)
Q Consensus 329 L~--rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ry 406 (798)
|. ....-+|=.|+..+ +. -+.+..|-|.+.+..|+.+++..-|.. +++... ..+.+++
T Consensus 132 LEEPp~~t~fiL~t~~~~--~l---l~TI~SRCq~~~l~~p~~~~~~~WL~~--------q~~~~~----~~aL~l~--- 191 (319)
T PRK06090 132 LEEPAPNCLFLLVTHNQK--RL---LPTIVSRCQQWVVTPPSTDQAMQWLKG--------QGISVP----AYALKLN--- 191 (319)
T ss_pred HCCCCCCEEEEEEECCHH--HC---CCCHHHCCCCCCCCCCCHHHHHHHHHH--------HCCCCH----HHHHHHC---
T ss_conf 428998838998768512--08---641876144502899599999999988--------487557----9999884---
Q ss_pred CCCCCCHHHHHHHHHH
Q ss_conf 0155564679889986
Q gi|254780163|r 407 FTSRKLPDKAIDVIDE 422 (798)
Q Consensus 407 i~~r~lPdkAidllDe 422 (798)
.+ -|-+|++++.+
T Consensus 192 -~g--~Pl~a~~~l~~ 204 (319)
T PRK06090 192 -MG--SPLKTLAMMKE 204 (319)
T ss_pred -CC--CCHHHHHHHCC
T ss_conf -99--94999998638
No 374
>pfam03969 AFG1_ATPase AFG1-like ATPase. This family of proteins contains a P-loop motif and are predicted to be ATPases.
Probab=97.19 E-value=0.0031 Score=42.40 Aligned_cols=96 Identities=17% Similarity=0.274 Sum_probs=49.2
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEE----EEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 74896676411668999999998548988345201445----54046753063431237899999998720389839997
Q gi|254780163|r 227 NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIF----SLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYI 302 (798)
Q Consensus 227 n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~----~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfi 302 (798)
..-|-|+.|.|||-|..-+-..+--. +..|+. ..++-+-+. +.+|+ ..-+..+.+++.+.. -+|++
T Consensus 63 GlYl~G~VGrGKTmLMDlFy~~lp~~------~K~R~HFh~FM~~vH~~l~--~~~~~-~dpl~~va~~l~~~~-~lLCf 132 (361)
T pfam03969 63 GLYLWGGVGRGKTHLMDSFFESLPGE------RKRRTHFHRFMFRVHDELT--TLQGG-DDPLPIAADRFANEA-RLLCF 132 (361)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC------CCCCCCHHHHHHHHHHHHH--HHHCC-CCCHHHHHHHHHHCC-CEEEE
T ss_conf 68988998886999999999867753------4445667899999999999--97667-763899999997258-77997
Q ss_pred CCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEE
Q ss_conf 361663015544434477788887663026603887
Q gi|254780163|r 303 DEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIG 338 (798)
Q Consensus 303 deih~ligag~~~g~~~d~an~lkP~L~rg~~~~Ig 338 (798)
||+|.- --+.+|=.+.+++-...+| +.+|+
T Consensus 133 DEFqV~-----DIaDAMIL~rLf~~Lf~~g-vvlV~ 162 (361)
T pfam03969 133 DEFEVD-----DIGDAMILGRLFEALFARG-VSLVA 162 (361)
T ss_pred EEEEEC-----CHHHHHHHHHHHHHHHHCC-CEEEE
T ss_conf 635616-----7888999999999999779-78998
No 375
>PRK06921 hypothetical protein; Provisional
Probab=97.19 E-value=0.0056 Score=40.55 Aligned_cols=70 Identities=21% Similarity=0.442 Sum_probs=44.3
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCC-CCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 77874896676411668999999998548-98834520144554046753063431237899999998720389839997
Q gi|254780163|r 224 SKNNPLYVGDPGVGKTAIAEGFAKQIVDG-MVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYI 302 (798)
Q Consensus 224 ~KNn~~lvG~~gvGktaive~la~~i~~~-~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfi 302 (798)
++||-++.|+||+|||-+.-.+|..+... .+ .++-+....++..- +..|+ .....++.++.. -+|+|
T Consensus 115 ~~~~l~f~G~~G~GKThLa~aIa~~Ll~~~~~-------~Vly~~~~~~~~~l--k~~~~-~~~~~l~~~~~~--dlLII 182 (265)
T PRK06921 115 RKNSIALLGQPGSGKTHLLTAAANELMRKKGV-------PVLYFPFVEGFGDL--KDDFD-LLEAKLNRMKKV--EVLFI 182 (265)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCC-------EEEEEEHHHHHHHH--HHHHH-HHHHHHHHHHCC--CEEEE
T ss_conf 76627997289898899999999999996297-------19998879999999--98888-899999986329--99998
Q ss_pred CCH
Q ss_conf 361
Q gi|254780163|r 303 DEI 305 (798)
Q Consensus 303 dei 305 (798)
|++
T Consensus 183 DDL 185 (265)
T PRK06921 183 DDL 185 (265)
T ss_pred ECC
T ss_conf 221
No 376
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.17 E-value=0.026 Score=35.79 Aligned_cols=153 Identities=20% Similarity=0.265 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHHHHHHHHHCC-------------CCCCEEEECCCCCHHHHHHHHHHHHHHCCC--CCHH---------H
Q ss_conf 112221789999999986226-------------778748966764116689999999985489--8834---------5
Q gi|254780163|r 203 VDILVGRHEEINRTIQILCRR-------------SKNNPLYVGDPGVGKTAIAEGFAKQIVDGM--VPDI---------L 258 (798)
Q Consensus 203 LDPVIGRd~EI~riiqIL~RR-------------~KNn~~lvG~~gvGktaive~la~~i~~~~--vp~~---------l 258 (798)
+|-|||-+.-++.+-.-+..- --.--+..|++|+|||.++..+|+.+.-.+ .++. .
T Consensus 4 f~~ivGQe~v~~~L~~A~~~~R~~~~~~~~~~~~~~HAyLF~Gp~G~Gk~~~A~~~A~~l~C~~~~~~~cg~C~~C~~i~ 83 (395)
T PRK07940 4 WDRLVGQDAVVAELRAAARAARADSAHSAAAGSGMTHAWLFTGPPGSGRSNAARAFAAALQCTDPGVPGCGECRACRTVL 83 (395)
T ss_pred CHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 01315929999999999983634344333346876603763689987889999999999669999999998787899987
Q ss_pred HEE--EEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCC----CCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCC-
Q ss_conf 201--445540467530634312378999999987203----8983999736166301554443447778888766302-
Q gi|254780163|r 259 LGA--RIFSLDMGNLIAGTRYRGDFEERIKKIVKEIES----YANAILYIDEIHTLVGAGSASGISVDASNLLKPALSS- 331 (798)
Q Consensus 259 ~~~--~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~----~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~r- 331 (798)
.+. -+..+.. .|+..+ =+-++.+++++.. .+.-|..||+.|++ +.-|+|-|.-.|.-
T Consensus 84 ~g~hpDv~~i~p----~~~~i~---id~iR~l~~~~~~~p~~~~~kv~ii~~a~~m---------~~~a~NalLKtLEEP 147 (395)
T PRK07940 84 AGTHPDVRVVVP----EGLSIG---VDEVREIVQIAARRPTTGRWRIVVIEDADRL---------TERAANALLKAVEEP 147 (395)
T ss_pred CCCCCCEEEEEC----CCCCCC---HHHHHHHHHHHHHCCCCCCCEEEEEECHHHH---------CHHHHHHHHHHHCCC
T ss_conf 689987189826----877688---9999999999852730379559998077874---------899999999852178
Q ss_pred -CCEEEEEECC-HHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHH
Q ss_conf -6603887304-899999852011143200144306878689999998
Q gi|254780163|r 332 -GAVRCIGSTT-YSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVK 377 (798)
Q Consensus 332 -g~~~~IgatT-~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~ 377 (798)
+..-+|=.|| ++.. =+-.-.|-|.|....|+.++..+.|.
T Consensus 148 p~~~~fiL~t~~~~~l------lpTI~SRcq~~~f~~~~~~~i~~~L~ 189 (395)
T PRK07940 148 PPRTVWLLCAPSVEDV------LPTIRSRCRHVALRTPSVEAVADVLV 189 (395)
T ss_pred CCCEEEEEEECCHHHH------HHHHHHHHEECCCCCCCHHHHHHHHH
T ss_conf 8886999873997874------46887440002379999999999998
No 377
>PRK09087 hypothetical protein; Validated
Probab=97.17 E-value=0.021 Score=36.43 Aligned_cols=188 Identities=14% Similarity=0.145 Sum_probs=95.9
Q ss_pred HHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999998622677874896676411668999999998548988345201445540467530634312378999999987
Q gi|254780163|r 212 EINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKE 291 (798)
Q Consensus 212 EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~ 291 (798)
+.-..++-..--..+-.+|.|++|.|||.++.-++.+.-. .+ ++...+ .. .....
T Consensus 31 ~a~~~l~~~~~w~~~~~~L~Gp~gsGKTHL~~~~~~~~~a----------~~--~~~~~~----------~~---~~~~~ 85 (226)
T PRK09087 31 AAVSLVDRWPNWPSPVVVLAGPVGSGKTHLASIWREKADA----------LL--VHPNEI----------GS---DAANA 85 (226)
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC----------EE--ECHHHC----------CH---HHHHH
T ss_conf 9999998472677775899899999886999999998099----------68--366874----------74---66765
Q ss_pred HCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHCCHHHHHH---CEEEEECCC
Q ss_conf 20389839997361663015544434477788887663026-60388730489999985201114320---014430687
Q gi|254780163|r 292 IESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSG-AVRCIGSTTYSEYRQFFEKDKALVRR---FQKIDVSEP 367 (798)
Q Consensus 292 ~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg-~~~~IgatT~~ey~~~~e~d~al~rr---F~~i~v~ep 367 (798)
..... ++||+++.+ ...... .=+++--..+.| .+=+.+-+.|.+.. + +-+-|..| +..+.+++|
T Consensus 86 -~~~~~--~~idd~d~~----~~dEe~--LFhl~N~~~~~~~~LLlts~~~p~~l~--~-~L~DL~SRL~~~~~~~I~~p 153 (226)
T PRK09087 86 -AAERP--VLIEDIDAG----GFDETG--LFHLINSVRQAGTSLLMTSRLWPSAWN--V-KLPDLKSRLKAATVVEIGEP 153 (226)
T ss_pred -HCCCC--EEEECCCCC----CCCHHH--HHHHHHHHHHCCCEEEEECCCCHHHCC--C-CCHHHHHHHHCCEEEEECCC
T ss_conf -32798--899748777----747899--999999998539879998898956667--6-24689999857857983599
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 86899999986127665410351211178999998654201555646798899865333321144322113657899986
Q gi|254780163|r 368 SIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKT 447 (798)
Q Consensus 368 ~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~ 447 (798)
+.+.-..+|.. +-.-.++.++++++.+.+.-..|=+.. =-+.++-||++. . ..++.|+-.-+.++
T Consensus 154 dD~ll~~~L~k----~~~~r~l~l~~~v~~yll~r~~Rs~~~---l~~~l~~LD~~S-------L-~~kr~ITiplikev 218 (226)
T PRK09087 154 DDALLSGVIFK----LFADRQLYVEPHVVYYLVSRMERSLFA---AQTIVERLDRLA-------L-ERKSRITRALAAEV 218 (226)
T ss_pred CHHHHHHHHHH----HHHHCCCCCCHHHHHHHHHHCCCCHHH---HHHHHHHHHHHH-------H-HCCCCCCHHHHHHH
T ss_conf 98999999999----987576578888999999845889999---999999999999-------9-81899989999999
Q ss_pred HHHC
Q ss_conf 6310
Q gi|254780163|r 448 IASM 451 (798)
Q Consensus 448 ~~~~ 451 (798)
+.++
T Consensus 219 L~~l 222 (226)
T PRK09087 219 LNEM 222 (226)
T ss_pred HHHH
T ss_conf 9851
No 378
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=97.10 E-value=0.0064 Score=40.14 Aligned_cols=106 Identities=28% Similarity=0.410 Sum_probs=79.0
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCH----HHHH---------HHHHHHHH
Q ss_conf 8748966764116689999999985489883452014455404675306343123----7899---------99999872
Q gi|254780163|r 226 NNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGD----FEER---------IKKIVKEI 292 (798)
Q Consensus 226 Nn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~----fe~r---------~~~~~~~~ 292 (798)
+|.++||||=-|||++.-.||+.+.+|---..|+++++--+|==|=|||- |.|- +--| -..+|=-+
T Consensus 124 ~NTLiIsPPq~GKTTlLRDlaR~~StG~~~~~~~g~KVgivDERSEIAgC-~~GvPQ~~vG~RtDVLD~CPKAEGmMM~i 202 (282)
T TIGR02858 124 LNTLIISPPQCGKTTLLRDLARILSTGISKLGLKGKKVGIVDERSEIAGC-VNGVPQLDVGIRTDVLDGCPKAEGMMMLI 202 (282)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHH-CCCCCCCCCCCCEEECCCCCHHHHHHHHH
T ss_conf 67888868898851048889888607854246899746998432465654-58824144676067517885378999999
Q ss_pred CCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEE---ECCHHH
Q ss_conf 0389839997361663015544434477788887663026603887---304899
Q gi|254780163|r 293 ESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIG---STTYSE 344 (798)
Q Consensus 293 ~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~Ig---atT~~e 344 (798)
++-.+=|+..||| |+ .=|+.-||+ |+..| +.+|. +-++++
T Consensus 203 RSMSP~Viv~DEI------Gr----~ED~~Al~e-A~naG-V~~I~TaHg~~~~D 245 (282)
T TIGR02858 203 RSMSPDVIVVDEI------GR----EEDVEALLE-ALNAG-VSVIATAHGRDLED 245 (282)
T ss_pred HCCCCCEEEEECC------CC----HHHHHHHHH-HHCCC-CEEEEEECCCCHHH
T ss_conf 7069857998148------89----533899999-86167-56887640488126
No 379
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.10 E-value=0.0017 Score=44.33 Aligned_cols=95 Identities=24% Similarity=0.333 Sum_probs=51.6
Q ss_pred CCCCCEEEEECCCCHHHHHHHHH-HHHH--CCCCEEEE-EHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEE
Q ss_conf 78740688614320038899999-8730--47733772-06886124653011047800025644431003555158517
Q gi|254780163|r 504 NKPIGCYVFSGPTGVGKTEISKQ-LAFA--LGVQLLRF-DMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSV 579 (798)
Q Consensus 504 ~rP~g~flf~GptGvGKTelak~-la~~--~~~~lir~-dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sV 579 (798)
++|-|.+||+||||.|||-+.-+ |.+. ...+++.+ |=-||..++-..-=+.... |.+-...|...+|+.| -|
T Consensus 77 ~~~~GlilitGptGSGKtTtl~a~l~~~~~~~~~i~tiEdPvE~~~~~~~Q~~v~~~~---g~~~~~~lr~~LR~dP-Dv 152 (264)
T cd01129 77 EKPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKA---GLTFARGLRAILRQDP-DI 152 (264)
T ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEECCCC---CCCHHHHHHHHHCCCC-CE
T ss_conf 0899889997899997799999999864368850899867631456887357616666---8789999999855699-98
Q ss_pred EEECCHHHCCHHHHHHHHHHHHHHH
Q ss_conf 7740445502899999999877750
Q gi|254780163|r 580 VLLDEIEKSHPDVLNILLQIMDYGI 604 (798)
Q Consensus 580 vl~DEiEKAh~~v~~~llqild~G~ 604 (798)
|+++||-- ++.....++.-..|+
T Consensus 153 i~igEiRD--~eta~~a~~aa~tGh 175 (264)
T cd01129 153 IMVGEIRD--AETAEIAVQAALTGH 175 (264)
T ss_pred EEECCCCC--HHHHHHHHHHHHHCC
T ss_conf 87468899--999999999997099
No 380
>pfam00931 NB-ARC NB-ARC domain.
Probab=97.09 E-value=0.01 Score=38.71 Aligned_cols=149 Identities=19% Similarity=0.153 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHCCCCCC--EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEE-----EHHHH-------HC-
Q ss_conf 7899999999862267787--489667641166899999999854898834520144554-----04675-------30-
Q gi|254780163|r 209 RHEEINRTIQILCRRSKNN--PLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSL-----DMGNL-------IA- 273 (798)
Q Consensus 209 Rd~EI~riiqIL~RR~KNn--~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~l-----d~~~l-------~a- 273 (798)
||+++++++.-|..-.++= .-++|.+|||||+++..+.... .+.... +.++|-- +...+ +.
T Consensus 1 r~~~~~~i~~~L~~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~---~i~~~F-~~~~wv~vs~~~~~~~i~~~i~~~l~~ 76 (285)
T pfam00931 1 REDMIEALIEKLLEMSENLGVVGIVGMGGVGKTTLAKQIYNDD---SVGGHF-DSVAWVVVSKTYTEFRLQKDILQELGL 76 (285)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCH---HHHHCC-CEEEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 9689999999986489895399988999563999999997165---565059-838999979766689999999998566
Q ss_pred --CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHH
Q ss_conf --63431237899999998720389839997361663015544434477788887663026-603887304899999852
Q gi|254780163|r 274 --GTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSG-AVRCIGSTTYSEYRQFFE 350 (798)
Q Consensus 274 --g~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg-~~~~IgatT~~ey~~~~e 350 (798)
+.....+.++....+-+.++ .++.++++|++-.- .+...+..|....+ .-++|-+|-..+--+.
T Consensus 77 ~~~~~~~~~~~~l~~~l~~~L~-~kr~LiVLDDVw~~----------~~~~~l~~~~~~~~~gSrIIvTTR~~~V~~~-- 143 (285)
T pfam00931 77 DDSDWVEKNESELAVKIKEALL-RKRFLLVLDDVWEK----------NDWDKIGVPFPDGENGSRVIVTTRSESVAGR-- 143 (285)
T ss_pred CCCCCCCCCHHHHHHHHHHHHC-CCCEEEEECCCCCH----------HHHHHHHCCCCCCCCCCEEEEECCCHHHHHH--
T ss_conf 6545555789999999999972-79669996388878----------9999973457578998279985575899987--
Q ss_pred CCHHHHHHCEEEEECCCCHHHHHHHHHH
Q ss_conf 0111432001443068786899999986
Q gi|254780163|r 351 KDKALVRRFQKIDVSEPSIEDAIEIVKG 378 (798)
Q Consensus 351 ~d~al~rrF~~i~v~ep~~~~~~~iL~~ 378 (798)
+......+.+...+.+++..++..
T Consensus 144 ----~~~~~~~~~l~~L~~~es~~Lf~~ 167 (285)
T pfam00931 144 ----MGGTSKPHEVESLEPEESWELFSN 167 (285)
T ss_pred ----CCCCCCEEECCCCCHHHHHHHHHH
T ss_conf ----378883476168987999999999
No 381
>PRK13947 shikimate kinase; Provisional
Probab=97.03 E-value=0.023 Score=36.17 Aligned_cols=137 Identities=18% Similarity=0.262 Sum_probs=63.8
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHCC--CCCHHHHEEEEEEEEHHHHHCCCCCCCH--HHHHHHHHHHHHCCCCCEEEE
Q ss_conf 874896676411668999999998548--9883452014455404675306343123--789999999872038983999
Q gi|254780163|r 226 NNPLYVGDPGVGKTAIAEGFAKQIVDG--MVPDILLGARIFSLDMGNLIAGTRYRGD--FEERIKKIVKEIESYANAILY 301 (798)
Q Consensus 226 Nn~~lvG~~gvGktaive~la~~i~~~--~vp~~l~~~~i~~ld~~~l~ag~~~rg~--fe~r~~~~~~~~~~~~~~ilf 301 (798)
.|.+|||-||+|||+|-.-||++.--. |.-..+. +-...++..+.+- .|| |-+.=..++.++....+.|
T Consensus 2 knI~LiG~mGsGKTtiGk~La~~L~~~fiD~D~~Ie--~~~g~sI~eIf~~---~GE~~FR~~E~~~l~~~~~~~~~V-- 74 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKKVATTLSFGFIDTDKEIE--KMAGMTVSEIFEK---DGEVRFRSLEKAAVRKAARLKNLV-- 74 (171)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHH--HHCCCCHHHHHHH---HCHHHHHHHHHHHHHHHCCCCCEE--
T ss_conf 858997999998899999999997969898749999--8829988999998---489999999999999740368979--
Q ss_pred ECCHHHHHCCCCCCCCC-CCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHH-HHHHHHHH
Q ss_conf 73616630155444344-77788887663026603887304899999852011143200144306878689-99999861
Q gi|254780163|r 302 IDEIHTLVGAGSASGIS-VDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIED-AIEIVKGI 379 (798)
Q Consensus 302 ideih~ligag~~~g~~-~d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~-~~~iL~~~ 379 (798)
| +++||. +...|+ + .|.+..+-+-=-+.++...+-+.++. .| |+ +...+..+ -..++..-
T Consensus 75 -------i---stGGG~v~~~~n~-~-~l~~~g~vi~L~~~~~~l~~Rl~~~~--~R---Pl-l~~~~~~~~l~~l~~~R 136 (171)
T PRK13947 75 -------I---ATGGGVVLNPENI-V-QLRKNGVLICLVARPEVILRRIKKKK--DR---PL-LMVGNPEERIRELLKER 136 (171)
T ss_pred -------E---ECCCCCCCCHHHH-H-HHHHCCEEEEECCCHHHHHHHHHCCC--CC---CC-CCCCCHHHHHHHHHHHH
T ss_conf -------9---7898500699999-9-99968989997399999999972899--99---97-98998799999999999
Q ss_pred HHHHHHHC
Q ss_conf 27665410
Q gi|254780163|r 380 KPYFEEHH 387 (798)
Q Consensus 380 ~~~ye~~h 387 (798)
.+.|+..|
T Consensus 137 ~~~Y~~Ad 144 (171)
T PRK13947 137 EPFYRFAD 144 (171)
T ss_pred HHHHHHCC
T ss_conf 99999769
No 382
>PRK13695 putative NTPase; Provisional
Probab=97.03 E-value=0.0046 Score=41.20 Aligned_cols=139 Identities=22% Similarity=0.265 Sum_probs=69.1
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCC-------CHH-----HHEEEEEEEEHHH--HHC----CC-----CCC---CH
Q ss_conf 7489667641166899999999854898-------834-----5201445540467--530----63-----431---23
Q gi|254780163|r 227 NPLYVGDPGVGKTAIAEGFAKQIVDGMV-------PDI-----LLGARIFSLDMGN--LIA----GT-----RYR---GD 280 (798)
Q Consensus 227 n~~lvG~~gvGktaive~la~~i~~~~v-------p~~-----l~~~~i~~ld~~~--l~a----g~-----~~r---g~ 280 (798)
...+.|+||||||+++..+...+.+... ++. -.+..+..++-+. .+| .. +|. .+
T Consensus 5 kI~iTG~PGvGKTTli~Kv~~~L~~~g~~v~GF~T~Evre~G~R~GF~vv~l~~g~~~~lA~~~~~~~~~VgkY~V~~~~ 84 (174)
T PRK13695 5 RIGITGMPGVGKTTLVLKIAELLAREGYKVGGFITEEVREGGKRIGFKIIDLDTGEEGILARVGAVSRPRVGKYVVNLED 84 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCEEEEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEHHH
T ss_conf 99987899988999999999998636961746995256038828505999905885687675378898554566871689
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHH-C
Q ss_conf 789999999872038983999736166301554443447778888766302660388730489999985201114320-0
Q gi|254780163|r 281 FEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRR-F 359 (798)
Q Consensus 281 fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rr-F 359 (798)
||.-...++..+....+ ++.|||| |.-+--|-..-+.+.-+|.++ -.++|.- +. .+.+. +.|| +
T Consensus 85 ~e~~~~~~l~~a~~~~d-livIDEI------G~MEl~s~~F~~~V~~~L~s~-kpvl~ti-h~---p~v~~---ik~~~~ 149 (174)
T PRK13695 85 LERIAIPAISRALREAD-LIIIDEI------GPMELKSKKFVSAVEEVLKSE-KPVIATV-HR---PVVQR---IRSLGG 149 (174)
T ss_pred HHHHHHHHHHHCCCCCC-EEEEECC------CHHHHHHHHHHHHHHHHHCCC-CCEEEEE-CH---HHHHH---HHCCCC
T ss_conf 78998999983535787-9999631------033110499999999997389-9899997-75---88898---633798
Q ss_pred EEEEECCCCHHHHH-HHHHHHH
Q ss_conf 14430687868999-9998612
Q gi|254780163|r 360 QKIDVSEPSIEDAI-EIVKGIK 380 (798)
Q Consensus 360 ~~i~v~ep~~~~~~-~iL~~~~ 380 (798)
+.+.|.+-+.+.-. +||+-++
T Consensus 150 ~v~~vT~~NRd~l~~~Il~~l~ 171 (174)
T PRK13695 150 EVFWLTPENRNILPEEILNRLK 171 (174)
T ss_pred EEEEECHHHHHHHHHHHHHHHH
T ss_conf 9999893467755999999986
No 383
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.03 E-value=0.035 Score=34.84 Aligned_cols=113 Identities=14% Similarity=0.262 Sum_probs=68.0
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEEHHHHHCCCCCCHHC--CCCCHH--CCCCCCC---------CCC
Q ss_conf 7874068861432003889999987304-7733772068861246530110--478000--2564443---------100
Q gi|254780163|r 504 NKPIGCYVFSGPTGVGKTEISKQLAFAL-GVQLLRFDMSEYMERHAVSRLI--GAPPGY--VGFGQGG---------ILA 569 (798)
Q Consensus 504 ~rP~g~flf~GptGvGKTelak~la~~~-~~~lir~dmsey~e~~~vs~Li--GappGY--vG~~egg---------~Lt 569 (798)
+|---.+||.||.|+||+.+|..+|..+ ..+.-.--+. .-|+. +|+ |+-|-| +.-+++| .|.
T Consensus 22 ~rl~HA~L~~g~~G~Gk~~la~~la~~LlC~~~~~~~Cg---~C~sC-~l~~~g~HPD~~~i~pe~~~k~I~vd~IR~l~ 97 (319)
T PRK06090 22 ERIPGALLLQSDEGLGVESLVELFSHALLCQNYQSEACG---FCHSC-ELMKSGNHPDLHVIKPEKEGKSITVEQIRQCN 97 (319)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCC---CCHHH-HHHHCCCCCCCEEEECCCCCCCCCHHHHHHHH
T ss_conf 996306766799985799999999999808999999887---78779-99875899982366123356768799999999
Q ss_pred HHHHHCC----CEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHH
Q ss_conf 3555158----5177740445502899999999877750217799776125429999424214553
Q gi|254780163|r 570 DSVDQNP----YSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEM 631 (798)
Q Consensus 570 e~vr~~P----~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~ 631 (798)
+.+...| |-|+++|+.|+-+..-.|.||..|+|=- .||++|++|+--.+.+
T Consensus 98 ~~~~~~~~~g~~KV~iI~~ae~m~~~AaNALLKtLEEPp-----------~~t~fiL~t~~~~~ll 152 (319)
T PRK06090 98 RLAQESSQLGGYRLFVIEPADAMNESASNALLKTLEEPA-----------PNCLFLLVTHNQKRLL 152 (319)
T ss_pred HHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCCC-----------CCEEEEEEECCHHHCC
T ss_conf 997545210693699981444349999999999842899-----------8838998768512086
No 384
>KOG0741 consensus
Probab=97.02 E-value=0.0013 Score=45.02 Aligned_cols=19 Identities=42% Similarity=0.751 Sum_probs=10.7
Q ss_pred EEECCCCHHHHHHHHHHHH
Q ss_conf 8614320038899999873
Q gi|254780163|r 511 VFSGPTGVGKTEISKQLAF 529 (798)
Q Consensus 511 lf~GptGvGKTelak~la~ 529 (798)
|+.||+|+|||.+|+++..
T Consensus 260 LLyGPPGTGKTLiARqIGk 278 (744)
T KOG0741 260 LLYGPPGTGKTLIARQIGK 278 (744)
T ss_pred EEECCCCCCHHHHHHHHHH
T ss_conf 8877999870189999878
No 385
>pfam07693 KAP_NTPase KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.
Probab=97.01 E-value=0.036 Score=34.74 Aligned_cols=124 Identities=19% Similarity=0.371 Sum_probs=68.0
Q ss_pred EEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCH
Q ss_conf 17774044550289999999987775021779977612542999942421455330368988211148899999872887
Q gi|254780163|r 578 SVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSP 657 (798)
Q Consensus 578 sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~p 657 (798)
=||+.|+++.+.|+-.--+|...-. ..||.||++|+-.+ .+.+..++++.|.+
T Consensus 162 iVviIDDLDRc~p~~~v~~Le~Ik~---------~~d~~n~vfVLa~D------------------~~~v~~al~~~~~~ 214 (301)
T pfam07693 162 IVVIIDDLDRCEPEEAVELLEAVRL---------LFDFPNVVFILAYD------------------EEIIKKAIEHNYGG 214 (301)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHH---------HHCCCCEEEEEECC------------------HHHHHHHHHHHCCC
T ss_conf 8999736554887899999999999---------72679818999758------------------99999999987387
Q ss_pred ------HHHCCC-CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCC-CCCCHHHHHHHHH
Q ss_conf ------881776-82896288999999999999999999999866988999889999999718981-0153267999998
Q gi|254780163|r 658 ------EFLNRL-DSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDV-KMGARPLERIIKE 729 (798)
Q Consensus 658 ------eflnRi-d~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~-~~GAR~l~r~i~~ 729 (798)
+|+-+| +--+..-+++..+++..+...+..+........-.-.....-...+. .+.+. ..-.|.++|++..
T Consensus 215 ~~~~~~~YLeKiIq~p~~lP~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~nPR~ikR~lN~ 293 (301)
T pfam07693 215 GEIDGQDYLEKIIQLPFKLPPLGLRELRRFLMTLFDALEKGTPSEDRDRGLRADDLNIIL-DSEDKSNINPRELKRLINA 293 (301)
T ss_pred CCCCHHHHHHHHEECEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH-HHHCCCCCCHHHHHHHHHE
T ss_conf 874189999854102476799878999999999999985244444320234678999999-7411147999999998733
No 386
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.01 E-value=0.0027 Score=42.84 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=23.0
Q ss_pred CEEEEECCCCHHHHHHHHHHH-HHC-CCCEEEEE
Q ss_conf 068861432003889999987-304-77337720
Q gi|254780163|r 508 GCYVFSGPTGVGKTEISKQLA-FAL-GVQLLRFD 539 (798)
Q Consensus 508 g~flf~GptGvGKTelak~la-~~~-~~~lir~d 539 (798)
...-++||||.|||-+++.|+ |.+ ...-|++|
T Consensus 368 e~vaiVG~SGsGKSTL~~LL~r~ydp~~G~I~id 401 (575)
T PRK11160 368 EKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLN 401 (575)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 8899988999759999999862367899889999
No 387
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=97.00 E-value=0.0019 Score=43.97 Aligned_cols=152 Identities=23% Similarity=0.296 Sum_probs=96.7
Q ss_pred CEEEECCCCCHHHHHHHHHHHHH------HCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHH---------
Q ss_conf 74896676411668999999998------548988345201445540467530634312378999999987---------
Q gi|254780163|r 227 NPLYVGDPGVGKTAIAEGFAKQI------VDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKE--------- 291 (798)
Q Consensus 227 n~~lvG~~gvGktaive~la~~i------~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~--------- 291 (798)
.+=|+||+|.|||+++-.||... +.|+ ..+-+-|+-.=.+|..++-+.-+=+.+|.+.
T Consensus 23 PvHl~GPaG~GKT~LA~hvA~~r~RPV~l~~Gd-------~eL~~~DLvG~~~g~~~~kv~DqfihnV~K~~d~~~~~W~ 95 (265)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVVLINGD-------AELTTSDLVGSYAGYTRKKVVDQFIHNVVKLEDIVRQNWV 95 (265)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCEEEEECC-------CCCCCCCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCC
T ss_conf 667447888556899999997368968998658-------2326544231546752222320121113425122002667
Q ss_pred ------HCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCC------------------CCEEEEEECCHHHHHH
Q ss_conf ------2038983999736166301554443447778888766302------------------6603887304899999
Q gi|254780163|r 292 ------IESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSS------------------GAVRCIGSTTYSEYRQ 347 (798)
Q Consensus 292 ------~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~r------------------g~~~~IgatT~~ey~~ 347 (798)
+-++|- =|.-||+- ++. --+-|+|.-+|.- -++|+|=..-|.||-=
T Consensus 96 D~rLt~Av~eG~-TLVYdEF~------Rsk---P~~nNVLLSvlEE~vL~LPg~~~~~~Yv~VhP~FR~IfTSNp~EYAG 165 (265)
T TIGR02640 96 DNRLTLAVREGF-TLVYDEFT------RSK---PETNNVLLSVLEEGVLELPGKRGESRYVDVHPEFRVIFTSNPVEYAG 165 (265)
T ss_pred CCHHHHHHHCCC-EEEECCCC------CCC---CHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEECCCCCCCCC
T ss_conf 835789975697-27664757------886---20456567555523215888787787225788702463148701057
Q ss_pred HHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHH
Q ss_conf 852011143200144306878689999998612766541035121117899999865
Q gi|254780163|r 348 FFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSV 404 (798)
Q Consensus 348 ~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ 404 (798)
..+.--||..|.-.|.+++|+.+.-+.|+.. ++.+.++....+|+|-+
T Consensus 166 Vh~~QDALlDRL~ti~~D~~D~~~e~ai~~~---------~t~~~~~~a~~IV~lv~ 213 (265)
T TIGR02640 166 VHETQDALLDRLVTISMDYPDEDTETAILRA---------KTDVAEESAATIVRLVR 213 (265)
T ss_pred CCCHHHHHHHHHCCCCCCCCCHHHHHHHHHH---------HHCCCHHHHHHHHHHHH
T ss_conf 6771667766440045785444789999998---------60612467899999999
No 388
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.00 E-value=0.0017 Score=44.33 Aligned_cols=89 Identities=19% Similarity=0.360 Sum_probs=52.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHH--CCCCEEEE-EHHHHH---CCCCCCHHCCCCCHHCC---CCCCCCCCHHHHHCCCEE
Q ss_conf 6886143200388999998730--47733772-068861---24653011047800025---644431003555158517
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLAFA--LGVQLLRF-DMSEYM---ERHAVSRLIGAPPGYVG---FGQGGILADSVDQNPYSV 579 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la~~--~~~~lir~-dmsey~---e~~~vs~LiGappGYvG---~~egg~Lte~vr~~P~sV 579 (798)
++|++|+||+|||.|+++|+.. ...+++.+ |-.|.. .++.| .|.-.++| -| +.-.-.|..++|.+|--|
T Consensus 162 NilI~G~TgSGKTTll~aL~~~ip~~eRiitIEDt~EL~l~~~pn~v-~l~~~~~~-~g~~~vt~~~Ll~~aLR~rPDRI 239 (332)
T PRK13900 162 NIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSSHPNRV-HLLASKGG-QGRAKVTTQDLIEACLRLRPDRI 239 (332)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCCCEE-EEEECCCC-CCCCEECHHHHHHHHHCCCCCEE
T ss_conf 19998888988999999998358953535663140663566688889-99971688-88660869999999756899758
Q ss_pred EEECCHHHCCHHHHHHHHHHHHHH
Q ss_conf 774044550289999999987775
Q gi|254780163|r 580 VLLDEIEKSHPDVLNILLQIMDYG 603 (798)
Q Consensus 580 vl~DEiEKAh~~v~~~llqild~G 603 (798)
++-|+= .++.++ |||.+-.|
T Consensus 240 -ivGEvR--G~EA~~-~l~A~nTG 259 (332)
T PRK13900 240 -IVGELR--GAEAFS-FLRAINTG 259 (332)
T ss_pred -EECCCC--HHHHHH-HHHHHHCC
T ss_conf -445557--199999-99999769
No 389
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.99 E-value=0.032 Score=35.07 Aligned_cols=111 Identities=22% Similarity=0.292 Sum_probs=67.4
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEEHHHHHCCCCCCHHC--CCCCH-----------HCCCCCCCCCC
Q ss_conf 7874068861432003889999987304-7733772068861246530110--47800-----------02564443100
Q gi|254780163|r 504 NKPIGCYVFSGPTGVGKTEISKQLAFAL-GVQLLRFDMSEYMERHAVSRLI--GAPPG-----------YVGFGQGGILA 569 (798)
Q Consensus 504 ~rP~g~flf~GptGvGKTelak~la~~~-~~~lir~dmsey~e~~~vs~Li--GappG-----------YvG~~egg~Lt 569 (798)
+|=--.+||.||.|+||+.+|+.+|..+ ..+--.. +....-..-+++ |+-|- .++-|+-=.|.
T Consensus 19 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~LlC~~~~~~---~~Cg~C~sC~~~~~~~HPD~~~i~pe~~~~~I~IdqIR~l~ 95 (328)
T PRK05707 19 GRHAHAYLLHGPAGIGKRALAERLAAFLLCEAPQGG---GACGSCKGCQLLAAGSHPDNFVLEPEEADKPIKVDQVRELV 95 (328)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCC---CCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHH
T ss_conf 982204644799986799999999999848999998---99988889999875899987998426667769799999999
Q ss_pred HHHHHCC----CEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCH
Q ss_conf 3555158----5177740445502899999999877750217799776125429999424214
Q gi|254780163|r 570 DSVDQNP----YSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGA 628 (798)
Q Consensus 570 e~vr~~P----~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~ 628 (798)
+.+..+| |-|++.|+.|+-+..-.|.||..|+|= =.||++|+.|+--.
T Consensus 96 ~~~~~~~~~g~~KV~iI~~Ae~m~~~AaNALLKtLEEP-----------p~~t~fiL~t~~~~ 147 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEP-----------SGQTVLLLISHQPS 147 (328)
T ss_pred HHHHHCCCCCCCEEEEEEHHHHHCHHHHHHHHHHHHCC-----------CCCEEEEEEECCHH
T ss_conf 99831766789579995028773899999999985078-----------98759998609934
No 390
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=96.98 E-value=0.015 Score=37.51 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHH
Q ss_conf 222178999999998622677874896676411668999
Q gi|254780163|r 205 ILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAE 243 (798)
Q Consensus 205 PVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive 243 (798)
||..-..||...+ .. .+..||+|+||-|||+-|-
T Consensus 5 Pi~~~~~~i~~~l---~~--~~~~vl~a~tGsGKtTqvP 38 (812)
T PRK11664 5 PVAAVLPELLTAL---KT--APQVLLKAPTGAGKSTWLP 38 (812)
T ss_pred CHHHHHHHHHHHH---HH--CCEEEEEECCCCCHHHHHH
T ss_conf 8478999999999---97--9979999089999899999
No 391
>PRK04132 replication factor C small subunit; Provisional
Probab=96.95 E-value=0.0053 Score=40.71 Aligned_cols=37 Identities=19% Similarity=0.081 Sum_probs=22.1
Q ss_pred CCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECC-CCEEEEEECCCCHHHH
Q ss_conf 044550289999999987775021779977612-5429999424214553
Q gi|254780163|r 583 DEIEKSHPDVLNILLQIMDYGILTDQSGKKISF-RNVILIMTTNAGALEM 631 (798)
Q Consensus 583 DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf-~n~iii~TsN~G~~~~ 631 (798)
||-.--+.|+++.+-.-+. +| .||-+|+.||--+..|
T Consensus 652 ~~a~~~t~d~~~~~~r~~~------------~~~~~~~~~~SCNYsSKII 689 (863)
T PRK04132 652 KKEYIGYKDVYDITCHNDH------------SFIANGFVSHNCNYSSKII 689 (863)
T ss_pred HHHHHHHHHHHHHHHHHHH------------HHHCCCEEEEECCCCCCCC
T ss_conf 7888665779999987787------------6420561798667604074
No 392
>KOG1969 consensus
Probab=96.95 E-value=0.022 Score=36.22 Aligned_cols=172 Identities=22% Similarity=0.330 Sum_probs=100.5
Q ss_pred HHCCCCCCCCCCC-EEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHH-
Q ss_conf 5204456578740-68861432003889999987304773377206886124653011047800025644431003555-
Q gi|254780163|r 496 ARAGLSDPNKPIG-CYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVD- 573 (798)
Q Consensus 496 ~~~gl~~~~rP~g-~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr- 573 (798)
...++.+.+||-- .+|++||.|-|||-||...|...+-+.+-+|-|+=-.++.|-.-|- +-.-++.+-
T Consensus 314 ~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~----------~avq~~s~l~ 383 (877)
T KOG1969 314 LDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIE----------NAVQNHSVLD 383 (877)
T ss_pred HHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH----------HHHHHCCCCC
T ss_conf 632468667984006875368878724799999986285488732555434788999999----------9886411225
Q ss_pred --HCCCEEEEECCHHHCCHHHHHHHHHHHH-HHHCCCC-CCCEE------C---CCCEEEEEECCCCHHHHHHCCCCCCC
Q ss_conf --1585177740445502899999999877-7502177-99776------1---25429999424214553303689882
Q gi|254780163|r 574 --QNPYSVVLLDEIEKSHPDVLNILLQIMD-YGILTDQ-SGKKI------S---FRNVILIMTTNAGALEMSKARIGFGS 640 (798)
Q Consensus 574 --~~P~sVvl~DEiEKAh~~v~~~llqild-~G~ltd~-~Gr~v------d---f~n~iii~TsN~G~~~~~~~~~g~~~ 640 (798)
.+|.|+ ..|||+-|-+-..+++|.++. ++..+-+ ++... - .+-- ||+-+|=
T Consensus 384 adsrP~CL-ViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RP-IICICNd-------------- 447 (877)
T KOG1969 384 ADSRPVCL-VIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRP-IICICND-------------- 447 (877)
T ss_pred CCCCCCEE-EEECCCCCCHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHCCCCCCCC-EEEEECC--------------
T ss_conf 68886359-9842468728999999999974161421686632034555304654587-7898647--------------
Q ss_pred CCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCC
Q ss_conf 1114889999987288788177682896288999999999999999999999866988999889999999718
Q gi|254780163|r 641 SRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHG 713 (798)
Q Consensus 641 ~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~ 713 (798)
. .-++|+. .+| +-.|+.|.|-....+. .+|+.-.... .+.++..++..|++.+
T Consensus 448 -L----YaPaLR~-Lr~-----~A~ii~f~~p~~s~Lv-------~RL~~IC~rE--~mr~d~~aL~~L~el~ 500 (877)
T KOG1969 448 -L----YAPALRP-LRP-----FAEIIAFVPPSQSRLV-------ERLNEICHRE--NMRADSKALNALCELT 500 (877)
T ss_pred -C----CCHHHHH-CCC-----CEEEEEECCCCHHHHH-------HHHHHHHHHH--CCCCCHHHHHHHHHHH
T ss_conf -5----5533331-021-----0489995699766899-------9999997641--5778878999999986
No 393
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=96.94 E-value=0.0008 Score=46.62 Aligned_cols=37 Identities=24% Similarity=0.486 Sum_probs=27.0
Q ss_pred CEEE-EECCCCHHHHHHHHHHH--HHCCCCEEEEEHHHHH
Q ss_conf 0688-61432003889999987--3047733772068861
Q gi|254780163|r 508 GCYV-FSGPTGVGKTEISKQLA--FALGVQLLRFDMSEYM 544 (798)
Q Consensus 508 g~fl-f~GptGvGKTelak~la--~~~~~~lir~dmsey~ 544 (798)
|.+| ..||||.|||-|||.+- ---..--||+|-.|..
T Consensus 356 Ge~laIIGPSgSGKStLaR~~vG~W~~~~G~VRLDGadl~ 395 (556)
T TIGR01842 356 GEALAIIGPSGSGKSTLARILVGIWPPASGSVRLDGADLK 395 (556)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEHHHHH
T ss_conf 7458887478652588987887210135653364033440
No 394
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.94 E-value=0.019 Score=36.80 Aligned_cols=133 Identities=23% Similarity=0.374 Sum_probs=73.6
Q ss_pred HHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHC---CCCCCCHHHHHHHHHHHHH
Q ss_conf 9998622677874896676411668999999998548988345201445540467530---6343123789999999872
Q gi|254780163|r 216 TIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIA---GTRYRGDFEERIKKIVKEI 292 (798)
Q Consensus 216 iiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a---g~~~rg~fe~r~~~~~~~~ 292 (798)
-++...... .|-++.|++|||||-++..+|..+.+. +..|+-+....|+. .+++..+ +....+++.+
T Consensus 175 fi~~F~~~~-~nLlf~G~~G~GKTfLa~~IA~ell~~-------g~sViy~ta~~L~~~l~~~~~~~~--~~~~~~~~~l 244 (330)
T PRK06835 175 FIKNFDKNN-ENLLFYGNTGTGKTFLSNCIAKELLDR-------GKTVIYRTSDELIENLREIRFNND--NDAPELEDLL 244 (330)
T ss_pred HHHHCCCCC-CCEEEECCCCCCHHHHHHHHHHHHHHC-------CCEEEEEEHHHHHHHHHHHHCCCC--CCHHHHHHHH
T ss_conf 987247888-866988999998899999999999987-------994999629999999999754576--4489999999
Q ss_pred CCCCCEEEEECCHHHHHCCCCCCCCCCCHH---HHHHHHHCCCCEEEEEEC--CHHHHHHHHHCCHHHHHH---CEEEEE
Q ss_conf 038983999736166301554443447778---888766302660388730--489999985201114320---014430
Q gi|254780163|r 293 ESYANAILYIDEIHTLVGAGSASGISVDAS---NLLKPALSSGAVRCIGST--TYSEYRQFFEKDKALVRR---FQKIDV 364 (798)
Q Consensus 293 ~~~~~~ilfideih~ligag~~~g~~~d~a---n~lkP~L~rg~~~~Igat--T~~ey~~~~e~d~al~rr---F~~i~v 364 (798)
... + +|.|||+ |....++...+ +++--=+.++ ..+|-.| +++|..+.+. ++...|- |..+.+
T Consensus 245 ~~~-D-LLIIDDL------G~E~~t~~~~~~Lf~iIN~R~~~~-k~tIITTNl~~~eL~~~y~-eRi~SRi~~~~~~~~~ 314 (330)
T PRK06835 245 INC-D-LLIIDDL------GTESITEFSKTELFNLINKRLLMN-KKMIISTNLSLEELLKTYS-ERIASRLLGNFTLLKF 314 (330)
T ss_pred HHC-C-EEEEECC------CCCCCCHHHHHHHHHHHHHHHHCC-CCEEEECCCCHHHHHHHHH-HHHHHHHHHCCEEEEE
T ss_conf 618-9-8997210------345588689999999999998679-9979988999899999874-8999999818549985
Q ss_pred CCCC
Q ss_conf 6878
Q gi|254780163|r 365 SEPS 368 (798)
Q Consensus 365 ~ep~ 368 (798)
.-++
T Consensus 315 ~G~D 318 (330)
T PRK06835 315 YGED 318 (330)
T ss_pred ECCC
T ss_conf 2655
No 395
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.93 E-value=0.0012 Score=45.37 Aligned_cols=82 Identities=28% Similarity=0.501 Sum_probs=43.5
Q ss_pred CCCCEEEEECCCCHHHHH-HHHHHH-HH-----CCCCEEEEE---------HHHHHCCCCCCHHCCCCCHHCCCCCCCCC
Q ss_conf 874068861432003889-999987-30-----477337720---------68861246530110478000256444310
Q gi|254780163|r 505 KPIGCYVFSGPTGVGKTE-ISKQLA-FA-----LGVQLLRFD---------MSEYMERHAVSRLIGAPPGYVGFGQGGIL 568 (798)
Q Consensus 505 rP~g~flf~GptGvGKTe-lak~la-~~-----~~~~lir~d---------msey~e~~~vs~LiGappGYvG~~egg~L 568 (798)
.|-+++.|+||||||||- |||.-| |. ...++|+.| ++-|.+ +.|-|=--| | ..-.|
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~------im~vp~~vv-~-~~~el 272 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYAD------IMGVPLEVV-Y-SPKEL 272 (407)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHH------HHCCCEEEE-C-CHHHH
T ss_conf 468579998998875887999999999753257606899714411528999999999------869955996-3-99999
Q ss_pred CHHHHH-CCCEEEEECCHHHCCHHHHH
Q ss_conf 035551-58517774044550289999
Q gi|254780163|r 569 ADSVDQ-NPYSVVLLDEIEKSHPDVLN 594 (798)
Q Consensus 569 te~vr~-~P~sVvl~DEiEKAh~~v~~ 594 (798)
-+++.. +-+-|||.|-+-.-|.|...
T Consensus 273 ~~ai~~l~~~d~ILVDTaGrs~~D~~~ 299 (407)
T COG1419 273 AEAIEALRDCDVILVDTAGRSQYDKEK 299 (407)
T ss_pred HHHHHHHHCCCEEEEECCCCCCCCHHH
T ss_conf 999998531888999689988337899
No 396
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.93 E-value=0.0017 Score=44.19 Aligned_cols=91 Identities=26% Similarity=0.407 Sum_probs=48.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHHH--CCCCEEEE-EHHHHHC--CCCCCHHCCCCCHHCCCC---CCCCCCHHHHHCCCEE
Q ss_conf 06886143200388999998730--47733772-0688612--465301104780002564---4431003555158517
Q gi|254780163|r 508 GCYVFSGPTGVGKTEISKQLAFA--LGVQLLRF-DMSEYME--RHAVSRLIGAPPGYVGFG---QGGILADSVDQNPYSV 579 (798)
Q Consensus 508 g~flf~GptGvGKTelak~la~~--~~~~lir~-dmsey~e--~~~vs~LiGappGYvG~~---egg~Lte~vr~~P~sV 579 (798)
.++|++||||.|||.+.++|... .....+.+ |-.|+.= ++.++ |.-.++.+-|.. -.-.+-.++|.+| ..
T Consensus 26 ~nIlIsG~tGSGKTTll~al~~~i~~~~rivtiEd~~El~l~~~~~v~-l~~~~~~~~~~~~~~~~~li~~aLR~~p-d~ 103 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVR-LVTRPGNVEGSGEVTMADLLRSALRMRP-DR 103 (186)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCEEE-EEEECCCCCCCCEECHHHHHHHHCCCCC-CE
T ss_conf 989998999998999999999613345645984153540477775688-8860464578650349999887366899-73
Q ss_pred EEECCHHHCCHHHHHHHHHHHHHH
Q ss_conf 774044550289999999987775
Q gi|254780163|r 580 VLLDEIEKSHPDVLNILLQIMDYG 603 (798)
Q Consensus 580 vl~DEiEKAh~~v~~~llqild~G 603 (798)
|++-|+-- ++.+. +++.+..|
T Consensus 104 iivGEiR~--~Ea~~-~l~a~~tG 124 (186)
T cd01130 104 IIVGEVRG--GEALD-LLQAMNTG 124 (186)
T ss_pred EECCCCCC--HHHHH-HHHHHHCC
T ss_conf 73175683--99999-99999748
No 397
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.93 E-value=0.042 Score=34.27 Aligned_cols=112 Identities=15% Similarity=0.170 Sum_probs=67.9
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHH-HCCCCEEEEEHHHHHCCCCCCHHC--CCCCHH--CCCCCCC---------CCCH
Q ss_conf 8740688614320038899999873-047733772068861246530110--478000--2564443---------1003
Q gi|254780163|r 505 KPIGCYVFSGPTGVGKTEISKQLAF-ALGVQLLRFDMSEYMERHAVSRLI--GAPPGY--VGFGQGG---------ILAD 570 (798)
Q Consensus 505 rP~g~flf~GptGvGKTelak~la~-~~~~~lir~dmsey~e~~~vs~Li--GappGY--vG~~egg---------~Lte 570 (798)
|---.+||.||.|+||..+|+.+|. -+..+-.-.+ ....-.--+|+ |+-|-| +.-+++| .|.+
T Consensus 22 rl~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~---~Cg~C~~C~l~~~~~HPD~~~i~pe~~~~~I~IdqIR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHK---SCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTE 98 (334)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 810467547999988999999999998189999999---99999789998668999847753422345599999999999
Q ss_pred HHHHCC----CEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHH
Q ss_conf 555158----517774044550289999999987775021779977612542999942421455
Q gi|254780163|r 571 SVDQNP----YSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALE 630 (798)
Q Consensus 571 ~vr~~P----~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~ 630 (798)
.+..+| +-|+++|+.|+-+..-.|.||..|+|=- .||+|||+|+--...
T Consensus 99 ~~~~~~~~g~~kV~iI~~Ae~mn~~AaNaLLKtLEEPp-----------~~t~~iL~t~~~~~l 151 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPP-----------EKTWFFLACREPARL 151 (334)
T ss_pred HHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCC-----------CCEEEEEECCCHHHC
T ss_conf 98436656994799976677759999999998612799-----------884999866985657
No 398
>KOG2227 consensus
Probab=96.92 E-value=0.007 Score=39.87 Aligned_cols=196 Identities=20% Similarity=0.261 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHH----HHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHH-HCCCCCC
Q ss_conf 1222178999999998----6226778748966764116689999999985489883452014455404675-3063431
Q gi|254780163|r 204 DILVGRHEEINRTIQI----LCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNL-IAGTRYR 278 (798)
Q Consensus 204 DPVIGRd~EI~riiqI----L~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l-~ag~~~r 278 (798)
+-+.||+.|...+-.- |+-.+--.--+-|.||.|||+..+.+-..... ..+...++.++-.+| -+++-|.
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~-----~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSK-----SSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHH-----HCCCCEEEEEEECCCCCHHHHHH
T ss_conf 7765258889999999985431266764575179986548899999874034-----31665169985123542588999
Q ss_pred CHHHH-------------HHHHHHHHHCCCC-CEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEE-ECCHH
Q ss_conf 23789-------------9999998720389-839997361663015544434477788887663026603887-30489
Q gi|254780163|r 279 GDFEE-------------RIKKIVKEIESYA-NAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIG-STTYS 343 (798)
Q Consensus 279 g~fe~-------------r~~~~~~~~~~~~-~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~Ig-atT~~ 343 (798)
+=|++ -+..+-....... -.+++.||+..++ ..+.+.+-. =..-|.|-...+-.|| |-+.+
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~---tr~~~vLy~-lFewp~lp~sr~iLiGiANslD 300 (529)
T KOG2227 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLI---TRSQTVLYT-LFEWPKLPNSRIILIGIANSLD 300 (529)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHH---HCCCCEEEE-EHHCCCCCCCEEEEEEEHHHHH
T ss_conf 998889887428950478999999987525633898721256776---046531432-1001367766056664001355
Q ss_pred HHHHHHHCCHHHHHH-------CEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCC-CCHHH
Q ss_conf 999985201114320-------0144306878689999998612766541035121117899999865420155-56467
Q gi|254780163|r 344 EYRQFFEKDKALVRR-------FQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSR-KLPDK 415 (798)
Q Consensus 344 ey~~~~e~d~al~rr-------F~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r-~lPdk 415 (798)
= .|+.|.|- =+.+.-.+-|.++-++||+..-. .-- +.....+|+.+.+|-...- -==.|
T Consensus 301 l------TdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~---~~~----t~~~~~~Aie~~ArKvaa~SGDlRk 367 (529)
T KOG2227 301 L------TDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS---EES----TSIFLNAAIELCARKVAAPSGDLRK 367 (529)
T ss_pred H------HHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHH---CCC----CCCCCHHHHHHHHHHHCCCCHHHHH
T ss_conf 7------77776665402578874665568788999999999974---054----4333038999999986257612899
Q ss_pred HHHHHH
Q ss_conf 988998
Q gi|254780163|r 416 AIDVID 421 (798)
Q Consensus 416 AidllD 421 (798)
|.|+.-
T Consensus 368 aLdv~R 373 (529)
T KOG2227 368 ALDVCR 373 (529)
T ss_pred HHHHHH
T ss_conf 999998
No 399
>KOG0055 consensus
Probab=96.92 E-value=0.0098 Score=38.80 Aligned_cols=90 Identities=30% Similarity=0.493 Sum_probs=51.9
Q ss_pred EEEEECCCCHHHHHHHHHHH-HHC-CCCEEEEE------------------------------------------HHHHH
Q ss_conf 68861432003889999987-304-77337720------------------------------------------68861
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLA-FAL-GVQLLRFD------------------------------------------MSEYM 544 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la-~~~-~~~lir~d------------------------------------------msey~ 544 (798)
+.-++||||.||+-+--.|- |.+ ..--|.+| |+|-.
T Consensus 1018 TvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~di~~~nl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi 1097 (1228)
T KOG0055 1018 TVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEII 1097 (1228)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHCCEECCCCHHHCCCHHHHHHCCCCCCCHHHHH
T ss_conf 89998899887998999999843888875998783145488799997535303676121041999986268778999999
Q ss_pred CC---CCCCHHC-CCCCHH---CCCCCCCCCC----------HHHHHCCCEEEEECCHHHCCHH-----HHHHHHHHH
Q ss_conf 24---6530110-478000---2564443100----------3555158517774044550289-----999999987
Q gi|254780163|r 545 ER---HAVSRLI-GAPPGY---VGFGQGGILA----------DSVDQNPYSVVLLDEIEKSHPD-----VLNILLQIM 600 (798)
Q Consensus 545 e~---~~vs~Li-GappGY---vG~~egg~Lt----------e~vr~~P~sVvl~DEiEKAh~~-----v~~~llqil 600 (798)
|+ ..+...| +-|-|| || +.|+||. .|+-|+| .|+||||---|=-. |++.|=.+.
T Consensus 1098 ~Aak~ANaH~FI~sLP~GyDT~VG-erG~QLSGGQKQRIAIARAilRnP-kILLLDEATSALDseSErvVQeALd~a~ 1173 (1228)
T KOG0055 1098 EAAKLANAHNFISSLPQGYDTRVG-ERGVQLSGGQKQRIAIARAILRNP-KILLLDEATSALDSESERVVQEALDRAM 1173 (1228)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHCCC-CEEEEECCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999971357788608775667567-666747724899999999997299-7654312001101364999999999862
No 400
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=96.90 E-value=0.025 Score=35.85 Aligned_cols=11 Identities=27% Similarity=0.344 Sum_probs=3.6
Q ss_pred CCHHHHHHHHH
Q ss_conf 11178999998
Q gi|254780163|r 392 SKEAIRAAVQL 402 (798)
Q Consensus 392 ~~~al~~av~l 402 (798)
+.+-|..|+.|
T Consensus 239 ~~~Dl~~Aa~L 249 (584)
T PRK13406 239 EEADIALAARL 249 (584)
T ss_pred CHHHHHHHHHH
T ss_conf 89999999998
No 401
>KOG3347 consensus
Probab=96.90 E-value=0.03 Score=35.36 Aligned_cols=121 Identities=22% Similarity=0.394 Sum_probs=68.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHC
Q ss_conf 68861432003889999987304773377206886124653011047800025644431003555158517774044550
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKS 588 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKA 588 (798)
..|.+|.+|+|||.+|.+||... .+--++||.|..... =|-||+|+ |--.+|||
T Consensus 9 NILvtGTPG~GKstl~~~lae~~--~~~~i~isd~vkEn~---------l~~gyDE~-----------y~c~i~DE---- 62 (176)
T KOG3347 9 NILVTGTPGTGKSTLAERLAEKT--GLEYIEISDLVKENN---------LYEGYDEE-----------YKCHILDE---- 62 (176)
T ss_pred CEEEECCCCCCCHHHHHHHHHHH--CCCEEEHHHHHHHHC---------CHHCCCCC-----------CCCCCCCH----
T ss_conf 87986799988025999999973--985674556776611---------02102322-----------36754567----
Q ss_pred CHHHHHHHHHHHH-HHHCCCCCCCEE---CCCCEEEEEECCCCH--HHHHHCCCCCCCCCCHHH--------HHHHHHHH
Q ss_conf 2899999999877-750217799776---125429999424214--553303689882111488--------99999872
Q gi|254780163|r 589 HPDVLNILLQIMD-YGILTDQSGKKI---SFRNVILIMTTNAGA--LEMSKARIGFGSSRNDDA--------DKEALRNF 654 (798)
Q Consensus 589 h~~v~~~llqild-~G~ltd~~Gr~v---df~n~iii~TsN~G~--~~~~~~~~g~~~~~~~~~--------~~~~l~~~ 654 (798)
..|.+-|-..|. .|.+-|-+|--. -.=+.++++|+-.-. +.+ .+-||...+..+. +.+..+..
T Consensus 63 -dkv~D~Le~~m~~Gg~IVDyHgCd~FperwfdlVvVLr~~~s~LY~RL--~sRgY~e~Ki~eNiecEIfgv~~eea~eS 139 (176)
T KOG3347 63 -DKVLDELEPLMIEGGNIVDYHGCDFFPERWFDLVVVLRTPNSVLYDRL--KSRGYSEKKIKENIECEIFGVVLEEARES 139 (176)
T ss_pred -HHHHHHHHHHHHCCCCEEEECCCCCCCHHHEEEEEEEECCCHHHHHHH--HHCCCCHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf -899988889875688488600567650113557999946845999999--97588888876510158999999999987
Q ss_pred CCHH
Q ss_conf 8878
Q gi|254780163|r 655 LSPE 658 (798)
Q Consensus 655 f~pe 658 (798)
|+|.
T Consensus 140 y~~~ 143 (176)
T KOG3347 140 YSPK 143 (176)
T ss_pred CCCC
T ss_conf 1874
No 402
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.88 E-value=0.0025 Score=43.02 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=16.0
Q ss_pred EEEEECCCCHHHHHHHHHHH
Q ss_conf 68861432003889999987
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLA 528 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la 528 (798)
...++||+|.|||-|.+..-
T Consensus 23 ~~~iiG~nGsGKSTLl~~~~ 42 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999998999999888
No 403
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.88 E-value=0.029 Score=35.42 Aligned_cols=140 Identities=19% Similarity=0.258 Sum_probs=69.0
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHCC--CCCHHHHEEEEEEEEHHHHHC--CCCCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 74896676411668999999998548--988345201445540467530--63431237899999998720389839997
Q gi|254780163|r 227 NPLYVGDPGVGKTAIAEGFAKQIVDG--MVPDILLGARIFSLDMGNLIA--GTRYRGDFEERIKKIVKEIESYANAILYI 302 (798)
Q Consensus 227 n~~lvG~~gvGktaive~la~~i~~~--~vp~~l~~~~i~~ld~~~l~a--g~~~rg~fe~r~~~~~~~~~~~~~~ilfi 302 (798)
|.+|||-||+|||++-.-||+++-.. |.-..+. +-+..++..+++ |-.|--+.|.+ ++.++...++.|+
T Consensus 1 nI~LiG~~G~GKstigk~la~~l~~~fiD~D~~Ie--~~~g~si~eif~~~Ge~~FR~~E~~---~l~~~~~~~~~VI-- 73 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIE--QRAGMSIPEIFAEEGEEGFRELERE---VLLLLLTKENAVI-- 73 (154)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHH--HHHCCCHHHHHHHCCHHHHHHHHHH---HHHHHHCCCCEEE--
T ss_conf 98998899998899999999997989796859999--9949999999987493878999999---9999856898599--
Q ss_pred CCHHHHHCCCCCCCCC-CCHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHH
Q ss_conf 3616630155444344-77788887663-026603887304899999852011143200144306878689999998612
Q gi|254780163|r 303 DEIHTLVGAGSASGIS-VDASNLLKPAL-SSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIK 380 (798)
Q Consensus 303 deih~ligag~~~g~~-~d~an~lkP~L-~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~ 380 (798)
+++||. ++-.|+ -.| ..|-+ +-=-+.+++..+-+.++. . .|+... ++.++-..++..-+
T Consensus 74 ----------s~GGG~v~~~~~~--~~l~~~~~v-I~L~~~~~~l~~Rl~~~~--~---RPll~~-~~~~~l~~l~~~R~ 134 (154)
T cd00464 74 ----------ATGGGAVLREENR--RLLLENGIV-VWLDASPEELLERLARDK--T---RPLLQD-EDPERLRELLEERE 134 (154)
T ss_pred ----------ECCCCCCCCHHHH--HHHHHCCEE-EEEECCHHHHHHHHHCCC--C---CCCCCC-CCHHHHHHHHHHHH
T ss_conf ----------7389733689999--999957908-999579999999960799--9---998889-99999999999999
Q ss_pred HHHHHHCCCEEC
Q ss_conf 766541035121
Q gi|254780163|r 381 PYFEEHHQLRYS 392 (798)
Q Consensus 381 ~~ye~~h~v~~~ 392 (798)
+.|+++-.+.+.
T Consensus 135 ~~Y~~~Ad~~i~ 146 (154)
T cd00464 135 PLYREVADLTID 146 (154)
T ss_pred HHHHHHCCEEEE
T ss_conf 999987999997
No 404
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.86 E-value=0.0062 Score=40.22 Aligned_cols=138 Identities=24% Similarity=0.398 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCE-EEECCCCCHHHHHHHHHH-HHHHC--CCCCHHHHEEEEEEEEHHHHHC---C---
Q ss_conf 222178999999998622677874-896676411668999999-99854--8988345201445540467530---6---
Q gi|254780163|r 205 ILVGRHEEINRTIQILCRRSKNNP-LYVGDPGVGKTAIAEGFA-KQIVD--GMVPDILLGARIFSLDMGNLIA---G--- 274 (798)
Q Consensus 205 PVIGRd~EI~riiqIL~RR~KNn~-~lvG~~gvGktaive~la-~~i~~--~~vp~~l~~~~i~~ld~~~l~a---g--- 274 (798)
||....+||-..++ +|.+ +++||+|-|||+-+--.- ...-. |.+ -.++=.||=..+++.=+| |
T Consensus 50 Pv~~~~~~i~~ai~------~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I-~~tQPRRlAArsvA~RvAeel~~~~ 122 (845)
T COG1643 50 PVTAVRDEILKAIE------QNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKI-GCTQPRRLAARSVAERVAEELGEKL 122 (845)
T ss_pred CCHHHHHHHHHHHH------HCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEE-EECCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 81888999999998------6978998679988758788999996001668759-9658438999999999999838986
Q ss_pred ---CCCCCHHHHHH------H-----HHHHHHCC----CCCEEEEECCHHHHHCCCCCCCCCCCH-HHHHHHHHC--CCC
Q ss_conf ---34312378999------9-----99987203----898399973616630155444344777-888876630--266
Q gi|254780163|r 275 ---TRYRGDFEERI------K-----KIVKEIES----YANAILYIDEIHTLVGAGSASGISVDA-SNLLKPALS--SGA 333 (798)
Q Consensus 275 ---~~~rg~fe~r~------~-----~~~~~~~~----~~~~ilfideih~ligag~~~g~~~d~-an~lkP~L~--rg~ 333 (798)
-.|+=-||.+. | -++.|+.. ++--++-|||.|-= +- ..|. =-+||-.++ |.+
T Consensus 123 G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHER-----Sl--~tDilLgllk~~~~~rr~D 195 (845)
T COG1643 123 GETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHER-----SL--NTDILLGLLKDLLARRRDD 195 (845)
T ss_pred CCEEEEEEEEECCCCCCCEEEEECCHHHHHHHHHCCCCCCCCEEEEECHHHH-----HH--HHHHHHHHHHHHHHHCCCC
T ss_conf 7654379996226787714689514799999843802045877997013355-----68--8899999999998646887
Q ss_pred EEEEE--ECC-HHHHHHHHHCCHHHH
Q ss_conf 03887--304-899999852011143
Q gi|254780163|r 334 VRCIG--STT-YSEYRQFFEKDKALV 356 (798)
Q Consensus 334 ~~~Ig--atT-~~ey~~~~e~d~al~ 356 (798)
+++|- ||- .+.+.+||..-+.+.
T Consensus 196 LKiIimSATld~~rfs~~f~~apvi~ 221 (845)
T COG1643 196 LKLIIMSATLDAERFSAYFGNAPVIE 221 (845)
T ss_pred CEEEEEECCCCHHHHHHHCCCCCEEE
T ss_conf 05999725358899997628998787
No 405
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.86 E-value=0.0068 Score=39.93 Aligned_cols=215 Identities=17% Similarity=0.224 Sum_probs=120.3
Q ss_pred CHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHH-----C-----CCCEEEEEHHH
Q ss_conf 0024665345899999999987752044565787406886143200388999998730-----4-----77337720688
Q gi|254780163|r 473 KNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFA-----L-----GVQLLRFDMSE 542 (798)
Q Consensus 473 ~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~-----~-----~~~lir~dmse 542 (798)
....+.+-+-++-.+.|-.-+. .|+.+.+. -+++...|.+|+|||-+.+..-.. . .=.++-+|--.
T Consensus 263 ~~vpe~lpcRe~E~~~I~~Fie---~~i~q~Gt-G~cLYISGVPGTGKTATV~eVIr~L~~~~~~~~lp~F~fVEINGMk 338 (650)
T PTZ00112 263 LVVPEYILGREKEAKEIRTFLE---TGIKQGGT-GQILYISGVPGTGKTATVYMVIKELQNKKLKGQLPWFNLFEINGVN 338 (650)
T ss_pred CCCCCCCCCCHHHHHHHHHHHH---HHCCCCCC-CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEE
T ss_conf 2577447770789999999998---64116886-6569997899998003699999999999970899981599973637
Q ss_pred HHCCCCCCH-----HCCCCCHHCCCCCC-CCCCHH-HHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECC
Q ss_conf 612465301-----10478000256444-310035-55158517774044550289999999987775021779977612
Q gi|254780163|r 543 YMERHAVSR-----LIGAPPGYVGFGQG-GILADS-VDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISF 615 (798)
Q Consensus 543 y~e~~~vs~-----LiGappGYvG~~eg-g~Lte~-vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf 615 (798)
..+||.+.. |.|-++- ..... ..|... -.++..+|+|.||++---..=+++++-+||=-.+..++
T Consensus 339 Lt~P~qaY~~L~e~Ltg~k~~--~~~~A~~lL~k~F~~~r~p~VlLvDELD~LvTkkQ~VlYNLFdWPT~~~Sk------ 410 (650)
T PTZ00112 339 LVHPNAAYRVFYKKLFNKKPP--NALNSYKELDKLFNNNRTPSILIVDEADYIVTKTQKVLFTLFDWPTKKNSK------ 410 (650)
T ss_pred CCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHCCCCEEEECCCCCCCCCCE------
T ss_conf 798788999999998489888--678999999998268997189997157777636774577736688988870------
Q ss_pred CCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 54299994242145533036898821114889999987288788177682896288999999999999999999999866
Q gi|254780163|r 616 RNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEK 695 (798)
Q Consensus 616 ~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~ 695 (798)
-|+|.-+|. +.. + +..+..+...+. + .-+.|.|.+.+.+.+|+.-.|..+
T Consensus 411 --LIVIaIANT---------MDL----P-ERL~~RVsSRLG---l----tRltF~PYt~~QL~eII~sRL~~~------- 460 (650)
T PTZ00112 411 --LILIIISNT---------MDL----P-YKMKPSCRSRLA---F----GRLVFSPYKYQQIEKVIKERLENC------- 460 (650)
T ss_pred --EEEEEEEEC---------CCC----C-HHHHHHHHHHCC---C----CEECCCCCCHHHHHHHHHHHHCCC-------
T ss_conf --799998506---------786----0-656666555228---8----500439989999999999986267-------
Q ss_pred CCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9889998899999997189810153267999998623
Q gi|254780163|r 696 GISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVK 732 (798)
Q Consensus 696 ~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~ 732 (798)
. .+++.|+++.+.+--.-.--||.--.+.++-|+
T Consensus 461 --~-~f~~dAIQl~ARKVAavSGDARRALdICRRAvE 494 (650)
T PTZ00112 461 --E-IIDHTALQLCARRVTNYSGDMRKALQICKLAFE 494 (650)
T ss_pred --C-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf --7-788789999988887503148999999999997
No 406
>PRK13948 shikimate kinase; Provisional
Probab=96.86 E-value=0.024 Score=36.07 Aligned_cols=144 Identities=17% Similarity=0.278 Sum_probs=68.8
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHCC--CCCHHHHEEEEEEEEHHHHHC--CCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 677874896676411668999999998548--988345201445540467530--6343123789999999872038983
Q gi|254780163|r 223 RSKNNPLYVGDPGVGKTAIAEGFAKQIVDG--MVPDILLGARIFSLDMGNLIA--GTRYRGDFEERIKKIVKEIESYANA 298 (798)
Q Consensus 223 R~KNn~~lvG~~gvGktaive~la~~i~~~--~vp~~l~~~~i~~ld~~~l~a--g~~~rg~fe~r~~~~~~~~~~~~~~ 298 (798)
|.+.|.+|||-+|.|||+|-.-||+++-.. |....+. +-+..++..+.+ |-.| |-+.=..++.++....+.
T Consensus 8 ~~~~~IvLIG~mGsGKStiGk~LA~~l~~~fiD~D~~Ie--~~~g~sI~eIF~~~GE~~---FR~~E~~~l~~l~~~~~~ 82 (182)
T PRK13948 8 RPATFVALAGFMGTGKSRIGWELSRALALHFVDTDKLIT--RVVGKSIPEVFAQEGEEY---FRACEKEVVRRVTRLDYA 82 (182)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHH--HHHCCCHHHHHHHHCHHH---HHHHHHHHHHHHHCCCCE
T ss_conf 999818988999998899999999996959888849999--988939999999848999---999999999999747996
Q ss_pred EEEECCHHHHHCCCCCCCCCC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHH-HHH
Q ss_conf 999736166301554443447-778888766302660388730489999985201114320014430687868999-999
Q gi|254780163|r 299 ILYIDEIHTLVGAGSASGISV-DASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAI-EIV 376 (798)
Q Consensus 299 ilfideih~ligag~~~g~~~-d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~-~iL 376 (798)
| | +++||.. ...|+ +=.+.+|.+-++-+....=|++ .. +. .| |+ +.-.+..+.+ .++
T Consensus 83 V---------I---StGGG~v~~~~n~-~~l~~~g~vv~L~~~~~~i~~R-~~-~~--~R---Pl-l~~~~~~~~l~~l~ 141 (182)
T PRK13948 83 V---------I---SLGGGTFIHEENR-RALLGRGPVVVLWASPETVYQR-TK-HS--DR---PL-LQVEDPLERIRTLM 141 (182)
T ss_pred E---------E---ECCCCEECCHHHH-HHHHHCCEEEEEECCHHHHHHH-CC-CC--CC---CC-CCCCCHHHHHHHHH
T ss_conf 9---------9---7588500589999-9999689899996999999988-17-89--99---98-88998799999999
Q ss_pred HHHHHHHHHHCCCEEC
Q ss_conf 8612766541035121
Q gi|254780163|r 377 KGIKPYFEEHHQLRYS 392 (798)
Q Consensus 377 ~~~~~~ye~~h~v~~~ 392 (798)
..-.+.|++.|-+.-+
T Consensus 142 ~eR~~~Y~~A~~~I~t 157 (182)
T PRK13948 142 EEREPVYRQGTIHVHS 157 (182)
T ss_pred HHHHHHHHHCCEEEEC
T ss_conf 9999999967889889
No 407
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.77 E-value=0.048 Score=33.84 Aligned_cols=142 Identities=17% Similarity=0.282 Sum_probs=71.4
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHCC--CCCHHHHEEEEEEEEHHHHHCCCCCCCH--HHHHHHHHHHHHCCCCCEEE
Q ss_conf 7874896676411668999999998548--9883452014455404675306343123--78999999987203898399
Q gi|254780163|r 225 KNNPLYVGDPGVGKTAIAEGFAKQIVDG--MVPDILLGARIFSLDMGNLIAGTRYRGD--FEERIKKIVKEIESYANAIL 300 (798)
Q Consensus 225 KNn~~lvG~~gvGktaive~la~~i~~~--~vp~~l~~~~i~~ld~~~l~ag~~~rg~--fe~r~~~~~~~~~~~~~~il 300 (798)
+.|.+|||-+|+|||+|-..||+..--. |....+. +-+..+++.+.+- .|| |-.+=..++.++...++.|+
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie--~~~g~sI~eIF~~---~GE~~FR~~E~~vl~~l~~~~~~Vi 76 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIE--KRTGMSIAEIFEE---EGEEGFRRLETEVLKELLEEDNAVI 76 (172)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHH--HHHCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 9618997179997768999999981998022469999--9979699999999---8289999999999999862699599
Q ss_pred EECCHHHHHCCCCCCCCCC-CHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCH-HHHHHHHH
Q ss_conf 9736166301554443447-77888876630-266038873048999998520111432001443068786-89999998
Q gi|254780163|r 301 YIDEIHTLVGAGSASGISV-DASNLLKPALS-SGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSI-EDAIEIVK 377 (798)
Q Consensus 301 fideih~ligag~~~g~~~-d~an~lkP~L~-rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~-~~~~~iL~ 377 (798)
+++||+. +..|. -+|. +| +-+-=-++++...+...+|. =.|+... +++ +.--+++.
T Consensus 77 ------------aTGGG~v~~~enr--~~l~~~g-~vv~L~~~~e~l~~Rl~~~~-----~RPll~~-~~~~~~l~~L~~ 135 (172)
T COG0703 77 ------------ATGGGAVLSEENR--NLLKKRG-IVVYLDAPFETLYERLQRDR-----KRPLLQT-EDPREELEELLE 135 (172)
T ss_pred ------------ECCCCCCCCHHHH--HHHHHCC-EEEEEECCHHHHHHHHCCCC-----CCCCCCC-CCHHHHHHHHHH
T ss_conf ------------7798611689999--9998488-58999699999999823466-----7986567-776899999999
Q ss_pred HHHHHHHHHCCCEEC
Q ss_conf 612766541035121
Q gi|254780163|r 378 GIKPYFEEHHQLRYS 392 (798)
Q Consensus 378 ~~~~~ye~~h~v~~~ 392 (798)
--.+.|+..-...++
T Consensus 136 ~R~~~Y~e~a~~~~~ 150 (172)
T COG0703 136 ERQPLYREVADFIID 150 (172)
T ss_pred HHHHHHHHHCCEEEC
T ss_conf 989999972748844
No 408
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.75 E-value=0.0019 Score=43.97 Aligned_cols=96 Identities=25% Similarity=0.353 Sum_probs=55.4
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHH-H--HHCCCCEEEE-EHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEE
Q ss_conf 787406886143200388999998-7--3047733772-06886124653011047800025644431003555158517
Q gi|254780163|r 504 NKPIGCYVFSGPTGVGKTEISKQL-A--FALGVQLLRF-DMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSV 579 (798)
Q Consensus 504 ~rP~g~flf~GptGvGKTelak~l-a--~~~~~~lir~-dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sV 579 (798)
++|-|-+||+||||.|||-+--++ . +..+.+.+.+ |=-||.-+.-.---+-. =+|..-...|-..+|+.| -|
T Consensus 255 ~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~---k~gltfa~~LRa~LRqDP-Dv 330 (500)
T COG2804 255 NRPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNP---KIGLTFARALRAILRQDP-DV 330 (500)
T ss_pred HCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEECCCCCEEECCC---CCCCCHHHHHHHHHCCCC-CE
T ss_conf 28970899968999988999999999862788508984078045159851563140---359978999999866599-85
Q ss_pred EEECCHHHCCHHHHHHHHHHHHHHHC
Q ss_conf 77404455028999999998777502
Q gi|254780163|r 580 VLLDEIEKSHPDVLNILLQIMDYGIL 605 (798)
Q Consensus 580 vl~DEiEKAh~~v~~~llqild~G~l 605 (798)
|+..||.- .+.-.+..|.--.|+|
T Consensus 331 ImVGEIRD--~ETAeiavqAalTGHL 354 (500)
T COG2804 331 IMVGEIRD--LETAEIAVQAALTGHL 354 (500)
T ss_pred EEEECCCC--HHHHHHHHHHHHCCCE
T ss_conf 99835577--8899999999842886
No 409
>KOG2035 consensus
Probab=96.74 E-value=0.01 Score=38.67 Aligned_cols=195 Identities=20% Similarity=0.268 Sum_probs=116.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHH---------EEEE--------
Q ss_conf 86112221789999999986226778748966764116689999999985489883452---------0144--------
Q gi|254780163|r 201 GKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILL---------GARI-------- 263 (798)
Q Consensus 201 GKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~---------~~~i-------- 263 (798)
.-+|-++++++--.++.-..+-..=-+-++-|+.|.||.+.+--|-..+.--.|+..=- ++++
T Consensus 10 ksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~ 89 (351)
T KOG2035 10 KSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSN 89 (351)
T ss_pred CHHHHCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCHHEEEEEEEEECCCCCEEEEEEECCC
T ss_conf 11430331888889998741457787078888898872111899999885787245056667886488863799994256
Q ss_pred EEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC---------EEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHC--CC
Q ss_conf 5540467530634312378999999987203898---------399973616630155444344777888876630--26
Q gi|254780163|r 264 FSLDMGNLIAGTRYRGDFEERIKKIVKEIESYAN---------AILYIDEIHTLVGAGSASGISVDASNLLKPALS--SG 332 (798)
Q Consensus 264 ~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~---------~ilfideih~ligag~~~g~~~d~an~lkP~L~--rg 332 (798)
|-|.+.-==||.--|- -++.+++++.+... -++.|-|..-| +-||-.-|.--+. .+
T Consensus 90 yHlEitPSDaG~~DRv----ViQellKevAQt~qie~~~qr~fKvvvi~ead~L---------T~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035 90 YHLEITPSDAGNYDRV----VIQELLKEVAQTQQIETQGQRPFKVVVINEADEL---------TRDAQHALRRTMEKYSS 156 (351)
T ss_pred CEEEECHHHCCCCCHH----HHHHHHHHHHHHCCHHHCCCCCEEEEEEECHHHH---------HHHHHHHHHHHHHHHHC
T ss_conf 5177473433751179----9999999987414133326665489998035765---------08899999999999860
Q ss_pred CEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCC
Q ss_conf 60388730489999985201114320014430687868999999861276654103512111789999986542015556
Q gi|254780163|r 333 AVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKL 412 (798)
Q Consensus 333 ~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~l 412 (798)
.+|+|-.+. +-.+.|| ++..|-=-|.|+-||.++-..+|..+-.+ -+....++.+...++-|.|-+
T Consensus 157 ~~RlIl~cn--s~SriIe---pIrSRCl~iRvpaps~eeI~~vl~~v~~k----E~l~lp~~~l~rIa~kS~~nL----- 222 (351)
T KOG2035 157 NCRLILVCN--STSRIIE---PIRSRCLFIRVPAPSDEEITSVLSKVLKK----EGLQLPKELLKRIAEKSNRNL----- 222 (351)
T ss_pred CCEEEEEEC--CCCCCHH---HHHHHEEEEECCCCCHHHHHHHHHHHHHH----HCCCCCHHHHHHHHHHHCCCH-----
T ss_conf 716999926--7430226---77622058767899878999999999987----334484999999999706439-----
Q ss_pred HHHHHHHHHHH
Q ss_conf 46798899865
Q gi|254780163|r 413 PDKAIDVIDEA 423 (798)
Q Consensus 413 PdkAidllDea 423 (798)
.+|+=+|..+
T Consensus 223 -RrAllmlE~~ 232 (351)
T KOG2035 223 -RRALLMLEAV 232 (351)
T ss_pred -HHHHHHHHHH
T ss_conf -9999999999
No 410
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.72 E-value=0.022 Score=36.31 Aligned_cols=105 Identities=24% Similarity=0.314 Sum_probs=51.8
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCC-CEEEEEHHHHHCC--CCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEE
Q ss_conf 7406886143200388999998730477-3377206886124--653011047800025644431003555158517774
Q gi|254780163|r 506 PIGCYVFSGPTGVGKTEISKQLAFALGV-QLLRFDMSEYMER--HAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLL 582 (798)
Q Consensus 506 P~g~flf~GptGvGKTelak~la~~~~~-~lir~dmsey~e~--~~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl~ 582 (798)
|.| +-|-||-|+|||.|--..-..+.. .-.|+..-+||-. ....+|.|-+ +-..-+...+. +-+-|+.|
T Consensus 65 ~~G-lYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~------dpl~~iA~~~~-~~~~vLCf 136 (367)
T COG1485 65 VRG-LYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT------DPLPPIADELA-AETRVLCF 136 (367)
T ss_pred CCE-EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCC------CCCHHHHHHHH-HCCCEEEE
T ss_conf 835-88889978649999999986587645665507799999999999971888------86579999998-41788986
Q ss_pred CCHHHCCHH---HHHHHH-HHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHH
Q ss_conf 044550289---999999-98777502177997761254299994242145533
Q gi|254780163|r 583 DEIEKSHPD---VLNILL-QIMDYGILTDQSGKKISFRNVILIMTTNAGALEMS 632 (798)
Q Consensus 583 DEiEKAh~~---v~~~ll-qild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~ 632 (798)
||++=-.+. ++.-|+ .+|.+ +++++.|||.--+.+-
T Consensus 137 DEF~VtDI~DAMiL~rL~~~Lf~~--------------GV~lvaTSN~~P~~LY 176 (367)
T COG1485 137 DEFEVTDIADAMILGRLLEALFAR--------------GVVLVATSNTAPDNLY 176 (367)
T ss_pred EEEEECCHHHHHHHHHHHHHHHHC--------------CCEEEEECCCCHHHHC
T ss_conf 303623757889999999999977--------------9689995899967854
No 411
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.69 E-value=0.0043 Score=41.41 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=11.0
Q ss_pred CEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 74896676411668999999998
Q gi|254780163|r 227 NPLYVGDPGVGKTAIAEGFAKQI 249 (798)
Q Consensus 227 n~~lvG~~gvGktaive~la~~i 249 (798)
|.++.|..|.|||++...|...|
T Consensus 151 nilI~G~TgsGKTTll~all~~i 173 (320)
T PRK13894 151 NILVIGGTGSGKTTLVNAIINEM 173 (320)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 58998588865689999998632
No 412
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.68 E-value=0.0035 Score=42.06 Aligned_cols=95 Identities=20% Similarity=0.272 Sum_probs=52.6
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHH--HHC---CCCEEEEEH---HHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHH--
Q ss_conf 874068861432003889999987--304---773377206---8861246530110478000256444310035551--
Q gi|254780163|r 505 KPIGCYVFSGPTGVGKTEISKQLA--FAL---GVQLLRFDM---SEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQ-- 574 (798)
Q Consensus 505 rP~g~flf~GptGvGKTelak~la--~~~---~~~lir~dm---sey~e~~~vs~LiGappGYvG~~egg~Lte~vr~-- 574 (798)
+-+-+.-|+||||||||-+.-.|| |.. ..+||+.|- .-.-.=-+-++++|.|= +|=++ ...|.+++.+
T Consensus 239 ~~~q~IALVGPTGVGKTTTIAKLAArf~~~~KkVALITtDTYRIGAVEQLKTYAeIMgVPV-~VV~d-p~eL~~AL~~lk 316 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV-IAVRD-EAAMTRALTYFK 316 (436)
T ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCE-EEECC-HHHHHHHHHHHH
T ss_conf 4171799989999888999999999986169808999806634769999999999849943-99688-899999999876
Q ss_pred --CCCEEEEECCHHHCCHHHHHH--HHHHHH
Q ss_conf --585177740445502899999--999877
Q gi|254780163|r 575 --NPYSVVLLDEIEKSHPDVLNI--LLQIMD 601 (798)
Q Consensus 575 --~P~sVvl~DEiEKAh~~v~~~--llqild 601 (798)
.-+-+||.|-.-.-+.|-..+ |...++
T Consensus 317 dka~~DLILIDTAGRS~RD~~~I~EL~~~l~ 347 (436)
T PRK11889 317 EEARVDYILIDTAGKNYRASETVEEMIETMG 347 (436)
T ss_pred HCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 3368888999298988468999999999985
No 413
>TIGR00678 holB DNA polymerase III, delta' subunit; InterPro: IPR004622 DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multi-chain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerisation to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This domain is the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tightly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classified as delta'. The noise cut-off is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication.
Probab=96.67 E-value=0.064 Score=32.93 Aligned_cols=146 Identities=18% Similarity=0.177 Sum_probs=91.5
Q ss_pred HHHHHHHCCCCCCEEE-ECCCCCHHHHHHHHHHH--------------------HHHCCCCCHHHHEEEEEEEEHHH---
Q ss_conf 9999862267787489-66764116689999999--------------------98548988345201445540467---
Q gi|254780163|r 215 RTIQILCRRSKNNPLY-VGDPGVGKTAIAEGFAK--------------------QIVDGMVPDILLGARIFSLDMGN--- 270 (798)
Q Consensus 215 riiqIL~RR~KNn~~l-vG~~gvGktaive~la~--------------------~i~~~~vp~~l~~~~i~~ld~~~--- 270 (798)
.+...+.+.+=++..| .|++||||..+++.||+ +|..|+=| |..+++=+..+
T Consensus 3 ~l~~~~~~~r~~HA~LF~G~~G~Gk~~~A~~~A~~l~C~~~~~~~~Cg~C~~C~~~~~G~HP----D~~~~~P~~~~~~~ 78 (216)
T TIGR00678 3 QLQRALEKGRLAHAYLFTGPEGVGKELLALALAKALLCEPRGGGEPCGECHSCRLIEAGNHP----DLHRLEPEGQSKSL 78 (216)
T ss_pred HHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCC----CEEEEEEECCCCCC
T ss_conf 67889860678861254448887489999999999807785778888858889998707998----23787423477777
Q ss_pred --------HHCC---CCCCCH-HHHHHHHHHHHHCC----CCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHC--CC
Q ss_conf --------5306---343123-78999999987203----898399973616630155444344777888876630--26
Q gi|254780163|r 271 --------LIAG---TRYRGD-FEERIKKIVKEIES----YANAILYIDEIHTLVGAGSASGISVDASNLLKPALS--SG 332 (798)
Q Consensus 271 --------l~ag---~~~rg~-fe~r~~~~~~~~~~----~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~--rg 332 (798)
-. | .+.+-+ ==+-++.|.+++.. .+.=|.+||+.+.| +.-|||-|.=.|. .+
T Consensus 79 ~~de~~~~~~-g~a~~~~~~~Ik~dq~R~l~~~~~~~~~~~~~rVviI~~Ae~m---------n~~AANALLKtLEEPp~ 148 (216)
T TIGR00678 79 TADEAAEGEE-GSAKRRALPQIKVDQVRELVEFLSLTPQESGRRVVIIEDAERM---------NEAAANALLKTLEEPPP 148 (216)
T ss_pred CHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHC---------CHHHHHHHHHHEECCCC
T ss_conf 7645897625-6421136787872789999999860642147517997673232---------58989865101012798
Q ss_pred CEEEEEECCHH--HHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHH
Q ss_conf 60388730489--999985201114320014430687868999999861
Q gi|254780163|r 333 AVRCIGSTTYS--EYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGI 379 (798)
Q Consensus 333 ~~~~IgatT~~--ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~ 379 (798)
..-+|=.|+-. + + ==+-+..|=|.+.+..|+.++..++|..-
T Consensus 149 ~t~fiL~~~~~DP~--~---lLpTI~SRCq~~~f~~l~~~~~~~~L~~~ 192 (216)
T TIGR00678 149 NTLFILITHSPDPE--R---LLPTIRSRCQVLPFPPLSEEALLQWLIEQ 192 (216)
T ss_pred CEEEEEECCCCCHH--H---HCCCCCCCEEEEEECCCCHHHHHHHHHHC
T ss_conf 70798850888843--3---22111032015862599889999999970
No 414
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=96.67 E-value=0.0013 Score=45.05 Aligned_cols=78 Identities=38% Similarity=0.639 Sum_probs=50.3
Q ss_pred CEEE-EECCCCHHHHHHHHHHH-HH---------CCCCE-------EEEE-------------------------HHHHH
Q ss_conf 0688-61432003889999987-30---------47733-------7720-------------------------68861
Q gi|254780163|r 508 GCYV-FSGPTGVGKTEISKQLA-FA---------LGVQL-------LRFD-------------------------MSEYM 544 (798)
Q Consensus 508 g~fl-f~GptGvGKTelak~la-~~---------~~~~l-------ir~d-------------------------msey~ 544 (798)
|.|+ -+||||+||+-|+|.+- ++ |+..+ +|=+ ||+ -
T Consensus 491 Ge~IGIvGpSGSGKSTLTKL~QRLYtP~~GqVLVDG~DLA~~DP~wLRRQ~gVVLQEn~LFsrSirdNI~l~~P~~~~-E 569 (703)
T TIGR01846 491 GEVIGIVGPSGSGKSTLTKLLQRLYTPEHGQVLVDGVDLAIADPAWLRRQVGVVLQENVLFSRSIRDNIALCNPGASV-E 569 (703)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHCCEEEEECCHHHCCCHHHHHHHCCCCCCH-H
T ss_conf 657998727898678999998861488887477703000101852010223023400021012278898517777698-9
Q ss_pred CCCCCCHHCCC-------CCHH---CCCCCCCCC----------CHHHHHCCCEEEEECCHHHC
Q ss_conf 24653011047-------8000---256444310----------03555158517774044550
Q gi|254780163|r 545 ERHAVSRLIGA-------PPGY---VGFGQGGIL----------ADSVDQNPYSVVLLDEIEKS 588 (798)
Q Consensus 545 e~~~vs~LiGa-------ppGY---vG~~egg~L----------te~vr~~P~sVvl~DEiEKA 588 (798)
+==.+++|=|| |-|| || |+||.| ..|+=.+| -+++|||-=-|
T Consensus 570 ~Vi~AA~LAGA~dFI~~Lp~GY~T~vg-E~G~~LSGGQRQRIAiARALv~nP-rILifDEATSA 631 (703)
T TIGR01846 570 HVIAAAKLAGAHDFISELPQGYNTEVG-EKGANLSGGQRQRIAIARALVANP-RILIFDEATSA 631 (703)
T ss_pred HHHHHHHHCCHHHHHHHCCCCCCCCCE-EECCCCCCHHHHHHHHHHHHHCCC-CEEEHHHHHCC
T ss_conf 999998621858999736376774001-241566733789999999973589-46720113122
No 415
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.66 E-value=0.018 Score=36.83 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=12.3
Q ss_pred CEEEEECCCCHHHHHHHHHHH
Q ss_conf 068861432003889999987
Q gi|254780163|r 508 GCYVFSGPTGVGKTEISKQLA 528 (798)
Q Consensus 508 g~flf~GptGvGKTelak~la 528 (798)
.++++.+|||.|||..+-.++
T Consensus 25 ~~~~i~~~tGsGKT~~~~~~~ 45 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPA 45 (201)
T ss_pred CCEEEECCCCCCHHHHHHHHH
T ss_conf 988998999960999999999
No 416
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.63 E-value=0.00051 Score=48.05 Aligned_cols=195 Identities=22% Similarity=0.357 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHCCCCCCEEEE-CCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCH--------
Q ss_conf 8999999998622677874896-6764116689999999985489883452014455404675306343123--------
Q gi|254780163|r 210 HEEINRTIQILCRRSKNNPLYV-GDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGD-------- 280 (798)
Q Consensus 210 d~EI~riiqIL~RR~KNn~~lv-G~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~-------- 280 (798)
..|++|++- .-=-+-..+|+ ||||+||+++.-.+|..++++ .+++.++.--=+.--+.|.+
T Consensus 76 i~ElDRVLG--GGlV~GS~iLlgGePGIGKSTLlLQ~a~~la~~--------~~vLYvSGEES~~Qik~RA~RLg~~~~~ 145 (454)
T PRK11823 76 IGELDRVLG--GGLVPGSVVLIGGDPGIGKSTLLLQVAAALAAG--------GKVLYVSGEESLQQIKLRAERLGLPSDN 145 (454)
T ss_pred CHHHHHCCC--CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC--------CCEEEECCCHHHHHHHHHHHHHCCCCCC
T ss_conf 556652215--872066489950799888999999999998559--------9579981501578999999975888887
Q ss_pred ----HHHHHHHHHHHHCCCCCEEEEECCHHHHHCCC--CCCCCCC----C-HHHHHHHHHCCCC-EEEEEECCHHHHHHH
Q ss_conf ----78999999987203898399973616630155--4443447----7-7888876630266-038873048999998
Q gi|254780163|r 281 ----FEERIKKIVKEIESYANAILYIDEIHTLVGAG--SASGISV----D-ASNLLKPALSSGA-VRCIGSTTYSEYRQF 348 (798)
Q Consensus 281 ----fe~r~~~~~~~~~~~~~~ilfideih~ligag--~~~g~~~----d-~an~lkP~L~rg~-~~~IgatT~~ey~~~ 348 (798)
-|-.+..|+..+.+.++-++.||-|+|+.-.. ++.| +. . ++.++.=+=.+|- +=+||--|-+. .
T Consensus 146 l~l~~et~l~~Il~~i~~~~P~~lIIDSIQT~~~~~~~s~pG-svsQVre~a~~L~~~AK~~~i~~~lVGHVTKdG---~ 221 (454)
T PRK11823 146 LYLLAETNLEDILATIEEEKPDLVVIDSIQTMYSPELESAPG-SVSQVRECAAELTRLAKQSGIAVFLVGHVTKEG---A 221 (454)
T ss_pred CEEEECCCHHHHHHHHHHHCCCEEEEECHHEEEECCCCCCCC-CHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC---C
T ss_conf 378853689999999986099889994311154156677899-789999999999999974498289999772677---6
Q ss_pred HHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCE---ECCHHHHHHHHHHHHHCCCC--CCHHHHHH
Q ss_conf 520111432001443068786899999986127665410351---21117899999865420155--56467988
Q gi|254780163|r 349 FEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLR---YSKEAIRAAVQLSVRHFTSR--KLPDKAID 418 (798)
Q Consensus 349 ~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~---~~~~al~~av~ls~ryi~~r--~lPdkAid 418 (798)
|.--+.|+.--..|.-=|-+....++|||..|-||-.-+.|- -++.-|...-+=|.-|+.+| ..|+.||-
T Consensus 222 iAGPkvLEHmVDtVl~fEGd~~~~~RiLR~~KNRFG~t~EiGvFeM~~~GL~~v~nPS~~Fls~~~~~~~Gs~i~ 296 (454)
T PRK11823 222 IAGPRVLEHMVDTVLYFEGDRHSRFRILRAVKNRFGATNEIGVFEMTEKGLREVSNPSELFLSERDENVPGSAVT 296 (454)
T ss_pred CCCCHHHHHHHCEEEEECCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEECCCHHHHHHHCCCCCCCCEEEE
T ss_conf 466145222010468751576655024563124677666058998616884566887799862688787750799
No 417
>PRK06696 uridine kinase; Validated
Probab=96.62 E-value=0.0059 Score=40.39 Aligned_cols=61 Identities=20% Similarity=0.435 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC---CCCEEEEEHHHHHCCCCC
Q ss_conf 8999999999877520445657874068861432003889999987304---773377206886124653
Q gi|254780163|r 483 EEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL---GVQLLRFDMSEYMERHAV 549 (798)
Q Consensus 483 ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~---~~~lir~dmsey~e~~~v 549 (798)
.+-|+.+++.|.. ..|+||+ ..-..||+|.|||.+|+.|+..+ +.+.+++.|-.|-.+.+.
T Consensus 8 ~~~~~~~~~~i~~-----~~p~rpl-~VgIdG~~gSGKTTlA~~La~~L~~~G~~V~~v~~Ddf~~~~~~ 71 (227)
T PRK06696 8 KQVVKEIANHILT-----LNLTRPL-RVAIDGITASGKTTFANELAEEIKKRGRPVIRASIDDFHNPKVI 71 (227)
T ss_pred HHHHHHHHHHHHH-----CCCCCCE-EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHH
T ss_conf 7899999999983-----5999868-99977899878799999999999746994899715443473777
No 418
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=96.62 E-value=0.0075 Score=39.64 Aligned_cols=20 Identities=25% Similarity=0.609 Sum_probs=18.1
Q ss_pred EEEEECCCCHHHHHHHHHHH
Q ss_conf 68861432003889999987
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLA 528 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la 528 (798)
.+-++||.|.|||+|++.|+
T Consensus 288 ~~~i~G~nGsGKSTLl~~l~ 307 (490)
T PRK10938 288 HWQIVGPNGAGKSTLLSLIT 307 (490)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89998678887999999980
No 419
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482 This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=96.60 E-value=0.00024 Score=50.39 Aligned_cols=120 Identities=24% Similarity=0.450 Sum_probs=71.4
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEE-H
Q ss_conf 544258877548611222178999999998622677874896676411668999999998548988345201445540-4
Q gi|254780163|r 190 YCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLD-M 268 (798)
Q Consensus 190 Fg~DLTe~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld-~ 268 (798)
.|-||++ |+|=+. =+|-++|=. =..-|-+|+|+||.|||=++..+---. | .|.|...++.. +
T Consensus 189 ~~~DL~d---------v~GQ~~-akRAleIAa-AGGHNlll~GPPGsGKTmla~r~~giL-----P-~L~~~EalE~~~v 251 (505)
T TIGR00368 189 IDLDLKD---------VKGQQH-AKRALEIAA-AGGHNLLLLGPPGSGKTMLASRLQGIL-----P-PLTNEEALETARV 251 (505)
T ss_pred HHCCCCC---------CCCHHH-CCHHHHHHH-HCCCCEEEECCCCCCHHHHHHHHHCCC-----C-CCCCHHHHHHHHH
T ss_conf 1044322---------545101-102677753-135643767824962689998751057-----8-6451266667888
Q ss_pred HHHHCCCCCCCHHH-HH-HHH---------HH--------HHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 67530634312378-99-999---------99--------8720389839997361663015544434477788887663
Q gi|254780163|r 269 GNLIAGTRYRGDFE-ER-IKK---------IV--------KEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPAL 329 (798)
Q Consensus 269 ~~l~ag~~~rg~fe-~r-~~~---------~~--------~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L 329 (798)
.|++---+-|++|- +| +++ ++ -|+.=+.|=|||.||+-=- .- .+=..|.-.|
T Consensus 252 ~S~~~~l~~~~~~~rQRPFR~PHHsAS~~~lvGGG~~P~PGEiSLAhnGvLFLDEl~EF------~r---~vL~~LR~Pl 322 (505)
T TIGR00368 252 LSLVGKLIDRKQWKRQRPFRSPHHSASKPALVGGGSIPKPGEISLAHNGVLFLDELPEF------KR---KVLDALREPL 322 (505)
T ss_pred HHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHCCCCHHHHCCHHH------HH---HHHHHHCCCC
T ss_conf 88887576523011068677865002566640587522285120200541043222044------67---8998717874
Q ss_pred CCCCEE
Q ss_conf 026603
Q gi|254780163|r 330 SSGAVR 335 (798)
Q Consensus 330 ~rg~~~ 335 (798)
..|+|.
T Consensus 323 Edg~i~ 328 (505)
T TIGR00368 323 EDGSIS 328 (505)
T ss_pred CCCCEE
T ss_conf 267068
No 420
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.59 E-value=0.0072 Score=39.79 Aligned_cols=32 Identities=31% Similarity=0.403 Sum_probs=20.6
Q ss_pred CEEEEECCCCHHHHHHHHHHHH-----HCCCCEEEEE
Q ss_conf 0688614320038899999873-----0477337720
Q gi|254780163|r 508 GCYVFSGPTGVGKTEISKQLAF-----ALGVQLLRFD 539 (798)
Q Consensus 508 g~flf~GptGvGKTelak~la~-----~~~~~lir~d 539 (798)
|+++++||+|||||-++-.||+ +....|+.-|
T Consensus 207 ~VIaLVGvnGvGKTTTiAKLA~~l~~~gkkV~LVAaD 243 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTD 243 (407)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 0899989998978999999999999779917999706
No 421
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.57 E-value=0.074 Score=32.48 Aligned_cols=124 Identities=19% Similarity=0.269 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHCCC----CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCC---CCCH
Q ss_conf 17899999999862267----7874896676411668999999998548988345201445540467530634---3123
Q gi|254780163|r 208 GRHEEINRTIQILCRRS----KNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTR---YRGD 280 (798)
Q Consensus 208 GRd~EI~riiqIL~RR~----KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~---~rg~ 280 (798)
+|-+-+..+.+.+..-. .....|-|++|||||-++-++|..+++..+ .+.-+.+..++...| --|.
T Consensus 136 ~R~~a~~~a~~F~~~y~~~~~~kGlyl~G~~G~GKTyL~~aian~La~~g~-------~v~~v~~p~~~~~lK~s~~d~s 208 (306)
T PRK08939 136 DRLDALMAALDFLEAYKPGEKVKGLYLYGDFGVGKTYLLAAIANELAKKGV-------SSTLVHFPEFIRELKNAISDGS 208 (306)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCC-------EEEEEEHHHHHHHHHHHHCCCC
T ss_conf 899999999999997376988877889899999899999999999998699-------2999875999999999864898
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHC---CCCEEEEEEC--CHHHHHHHHH
Q ss_conf 78999999987203898399973616630155444344777888876630---2660388730--4899999852
Q gi|254780163|r 281 FEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALS---SGAVRCIGST--TYSEYRQFFE 350 (798)
Q Consensus 281 fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~---rg~~~~Igat--T~~ey~~~~e 350 (798)
+++ .++.++.. -+|++|+| ||- .-++.--..+|-|.|. ..++-++-.| +++|...|+.
T Consensus 209 ~~~----~i~~~k~~--~vLiLDDi----GaE--~~t~W~rd~vl~~IL~~Rm~~~lPTffTSN~~~~eLe~~l~ 271 (306)
T PRK08939 209 VKE----KIDAVKEA--PVLMLDDI----GAE--QMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHLA 271 (306)
T ss_pred HHH----HHHHHHCC--CEEEEECC----CCC--CCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
T ss_conf 899----99998449--98998444----654--26777899899999999997499979977999999999986
No 422
>KOG1514 consensus
Probab=96.57 E-value=0.022 Score=36.32 Aligned_cols=249 Identities=17% Similarity=0.212 Sum_probs=134.7
Q ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH---H-HHCCCCCCEEEE-CCCCCHHHHHHHHHHHHH----HCCCCC
Q ss_conf 3035654425887754861122217899999999---8-622677874896-676411668999999998----548988
Q gi|254780163|r 185 PALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQ---I-LCRRSKNNPLYV-GDPGVGKTAIAEGFAKQI----VDGMVP 255 (798)
Q Consensus 185 ~~LdkFg~DLTe~AreGKLDPVIGRd~EI~riiq---I-L~RR~KNn~~lv-G~~gvGktaive~la~~i----~~~~vp 255 (798)
+.|+++--+|.-.+.... +=|||.|-..+-. . +.-+.-...+.| |-||+||||.|.++..-+ .++++|
T Consensus 380 S~l~~ara~Lhls~vp~s---LpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p 456 (767)
T KOG1514 380 SELSKARARLHLSAVPES---LPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELP 456 (767)
T ss_pred HHHHHHHHHHHHHHCCCC---CCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHCCCC
T ss_conf 378999998677745421---44146889999999997627777740799846999883212999999999877505789
Q ss_pred HHHHEEEEEEEEHHHHHC-------------CCCCCCHHHHHHHHHHHHH----CCCCCEEEEECCHHHHHCCCCCCCCC
Q ss_conf 345201445540467530-------------6343123789999999872----03898399973616630155444344
Q gi|254780163|r 256 DILLGARIFSLDMGNLIA-------------GTRYRGDFEERIKKIVKEI----ESYANAILYIDEIHTLVGAGSASGIS 318 (798)
Q Consensus 256 ~~l~~~~i~~ld~~~l~a-------------g~~~rg~fe~r~~~~~~~~----~~~~~~ilfideih~ligag~~~g~~ 318 (798)
++. .+++|...|.. |-+.. |..-+..+=... .....+++.|||+..|++ ....
T Consensus 457 ~f~----yveINgm~l~~~~~~Y~~I~~~lsg~~~~--~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvt--r~Qd-- 526 (767)
T KOG1514 457 KFD----YVEINGLRLASPREIYEKIWEALSGERVT--WDAALEALNFRFTVPKPKRSTTVVLIDELDILVT--RSQD-- 526 (767)
T ss_pred CCC----EEEECCEEECCHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHC--CCHH--
T ss_conf 860----79871446158899999999975557430--7788999986541678787877999635787735--2098--
Q ss_pred CCHHHHHH-HHHCCCCEEEEE-ECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHH-HHHHHHHHCCCEECCHH
Q ss_conf 77788887-663026603887-3048999998520111432001443068786899999986-12766541035121117
Q gi|254780163|r 319 VDASNLLK-PALSSGAVRCIG-STTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKG-IKPYFEEHHQLRYSKEA 395 (798)
Q Consensus 319 ~d~an~lk-P~L~rg~~~~Ig-atT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~-~~~~ye~~h~v~~~~~a 395 (798)
=.=|+++ |.+....|-+|+ |-|.+=-.+.+..-...-=-|+.|...+-+.++--+|+.. ++.. +..
T Consensus 527 -VlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~----------~~f 595 (767)
T KOG1514 527 -VLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL----------DAF 595 (767)
T ss_pred -HHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHCCCHHHHCCCEEEECCCCCHHHHHHHHHHHCCCH----------HHC
T ss_conf -897774077678986699995165647798854311233065055137788999999999860315----------431
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHHHH---HHHHHHCCCCHHHHHHHHHHCCCCCCHH
Q ss_conf 8999998654201555-6467988998653333211---4432211365789998663102453101
Q gi|254780163|r 396 IRAAVQLSVRHFTSRK-LPDKAIDVIDEAGASQILQ---PLSKRRKFITEKDIKKTIASMNRSIHTT 458 (798)
Q Consensus 396 l~~av~ls~ryi~~r~-lPdkAidllDea~a~~~~~---~~~~~~~~~~~~~i~~~~~~~~~gip~~ 458 (798)
...|++|.+|++..-. =-.+|.|+.+.|.--..-. .....-+.|...++.+++..+.. -|..
T Consensus 596 ~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~-~~~~ 661 (767)
T KOG1514 596 ENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLA-SPYI 661 (767)
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHH-HHHH
T ss_conf 42489999988775042278888998999997542213455553324432999999998750-0577
No 423
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.57 E-value=0.013 Score=37.92 Aligned_cols=20 Identities=40% Similarity=0.606 Sum_probs=17.0
Q ss_pred EEEEECCCCHHHHHHHHHHH
Q ss_conf 68861432003889999987
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLA 528 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la 528 (798)
.+-++||+|.|||.|.+.++
T Consensus 27 ~~~liG~nGsGKTTLl~~i~ 46 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLA 46 (180)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999899988999999995
No 424
>PRK10436 hypothetical protein; Provisional
Probab=96.55 E-value=0.0034 Score=42.11 Aligned_cols=96 Identities=24% Similarity=0.341 Sum_probs=55.0
Q ss_pred CCCCCEEEEECCCCHHHHHHHHH-HHH--HCCCCEEEE-EHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEE
Q ss_conf 78740688614320038899999-873--047733772-06886124653011047800025644431003555158517
Q gi|254780163|r 504 NKPIGCYVFSGPTGVGKTEISKQ-LAF--ALGVQLLRF-DMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSV 579 (798)
Q Consensus 504 ~rP~g~flf~GptGvGKTelak~-la~--~~~~~lir~-dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sV 579 (798)
.+|-|-+|++||||.|||-+--+ |.. ..+.+.+.+ |=-||.-+.-.--=+.+- .|.+-...|-..+|+.| -|
T Consensus 212 ~~p~GliLvtGPTGSGKTTTLya~L~~l~~~~~~I~TiEDPVE~~l~gi~Q~~vn~~---~g~tfa~~lrs~LRqDP-DV 287 (461)
T PRK10436 212 QQPQGLVLVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLAGINQTQIHPR---AGLTFQRVLRALLRQDP-DV 287 (461)
T ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECCC---CCHHHHHHHHHHHCCCC-CE
T ss_conf 389977999789999569999999974346771699960774355467545231322---13139999999874699-99
Q ss_pred EEECCHHHCCHHHHHHHHHHHHHHHC
Q ss_conf 77404455028999999998777502
Q gi|254780163|r 580 VLLDEIEKSHPDVLNILLQIMDYGIL 605 (798)
Q Consensus 580 vl~DEiEKAh~~v~~~llqild~G~l 605 (798)
|+..||-- .+...+-.|.--.|+|
T Consensus 288 ImvGEIRD--~eTA~~Ai~AAlTGHL 311 (461)
T PRK10436 288 IMVGEIRD--GETAEIAIKAAQTGHL 311 (461)
T ss_pred EEECCCCC--HHHHHHHHHHHHHCCE
T ss_conf 98657788--9999999999971984
No 425
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114 This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception.
Probab=96.49 E-value=0.016 Score=37.23 Aligned_cols=181 Identities=22% Similarity=0.431 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCC--CEEEECCCCCHHHHHHHHHHHHHHCC----------CCCHHHHEEEEEEEEHHHHH
Q ss_conf 2221789999999986226778--74896676411668999999998548----------98834520144554046753
Q gi|254780163|r 205 ILVGRHEEINRTIQILCRRSKN--NPLYVGDPGVGKTAIAEGFAKQIVDG----------MVPDILLGARIFSLDMGNLI 272 (798)
Q Consensus 205 PVIGRd~EI~riiqIL~RR~KN--n~~lvG~~gvGktaive~la~~i~~~----------~vp~~l~~~~i~~ld~~~l~ 272 (798)
++||+--=.+.+..++.|=.++ ++++-||.|.||==+++.|-..=-.. -+|..|-.-.+|.=.-|++-
T Consensus 136 ~liG~aPAMQevfR~igRL~~~~l~VlI~GESGTGKELVA~ALH~~s~R~~~PFiAlNmAAIP~~L~ESELFGHEkGAFT 215 (471)
T TIGR01818 136 ELIGEAPAMQEVFRAIGRLSRSDLSVLINGESGTGKELVARALHRHSPRARGPFIALNMAAIPKDLIESELFGHEKGAFT 215 (471)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECHHHCCHHHHHHHHCCCCCCCCC
T ss_conf 12368851689999999751696058885575775899999840137555777327302322246655432145653000
Q ss_pred CCC--CCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCC-------------CEEEE
Q ss_conf 063--431237899999998720389839997361663015544434477788887663026-------------60388
Q gi|254780163|r 273 AGT--RYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSG-------------AVRCI 337 (798)
Q Consensus 273 ag~--~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg-------------~~~~I 337 (798)
|+ .-.|-||+ ..|. -||.|||=-+ .+|+=-=|-=.|+-| ++|+|
T Consensus 216 -GA~~~~~GRFEQ----------A~GG-TLFLDEIGDM---------Pl~~QTRLLRVL~~G~f~rVGG~~p~k~DVRi~ 274 (471)
T TIGR01818 216 -GANTRRQGRFEQ----------ADGG-TLFLDEIGDM---------PLDLQTRLLRVLADGEFYRVGGRTPIKVDVRIV 274 (471)
T ss_pred -CCCCCCCCCEEE----------CCCC-CEECCCCCCC---------CHHHHHHHHHHHCCCCEEEECCCEEEEEEEEEE
T ss_conf -102556777253----------4888-2101021678---------776877798864078657726820245504667
Q ss_pred EECCHHHHHHHHHCCH---HHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 7304899999852011---1432001443068786899999986127665410351211178999998654201555646
Q gi|254780163|r 338 GSTTYSEYRQFFEKDK---ALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPD 414 (798)
Q Consensus 338 gatT~~ey~~~~e~d~---al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPd 414 (798)
+||-. ..++.++.=. -|=-|..+|.|.=|...+-.+=+..|...| |..|.+-- -+.-+.|-.
T Consensus 275 AAThq-~Le~lv~~G~FReDLfhRL~Vi~i~lPpLrER~eDi~~L~rhF------------L~~a~~~l--~~~~k~L~~ 339 (471)
T TIGR01818 275 AATHQ-DLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHF------------LALAAKEL--DVEPKLLSP 339 (471)
T ss_pred ECCCH-HHHHHHHCCCCHHHHHHHHCEEEECCCCCCCHHHHHHHHHHHH------------HHHHHHHC--CCCCCCCCH
T ss_conf 33665-6899965588135555512334621687212266899999999------------99988742--865113488
Q ss_pred HHHHHHH
Q ss_conf 7988998
Q gi|254780163|r 415 KAIDVID 421 (798)
Q Consensus 415 kAidllD 421 (798)
.+++.|.
T Consensus 340 ~~~~~L~ 346 (471)
T TIGR01818 340 EALEALK 346 (471)
T ss_pred HHHHHHH
T ss_conf 9999997
No 426
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.48 E-value=0.0061 Score=40.29 Aligned_cols=69 Identities=29% Similarity=0.556 Sum_probs=38.7
Q ss_pred CEE-EEECCCCHHHHHHHHHHH-HH---------CCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCC-------------
Q ss_conf 068-861432003889999987-30---------477337720688612465301104780002564-------------
Q gi|254780163|r 508 GCY-VFSGPTGVGKTEISKQLA-FA---------LGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFG------------- 563 (798)
Q Consensus 508 g~f-lf~GptGvGKTelak~la-~~---------~~~~lir~dmsey~e~~~vs~LiGappGYvG~~------------- 563 (798)
|.+ -++||+|.|||-|++.|+ +. ++.++-.+++.++.. -| |||.-+
T Consensus 28 G~~vaIvG~sGsGKSTLl~ll~gl~~p~~G~i~i~g~~~~~~~~~~~~~------~i----~~v~Q~~~lf~~ti~eNiL 97 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGD------HV----GYLPQDDELFSGSIAENIL 97 (173)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC------CE----EEEECCCEECCCCHHHHCC
T ss_conf 9999999999980999999996666679998999999933289989842------08----9990888367775899767
Q ss_pred CCCC-----CCHHHHHCCCEEEEECCHHH
Q ss_conf 4431-----00355515851777404455
Q gi|254780163|r 564 QGGI-----LADSVDQNPYSVVLLDEIEK 587 (798)
Q Consensus 564 egg~-----Lte~vr~~P~sVvl~DEiEK 587 (798)
-||| |..++-++| .|++|||---
T Consensus 98 SGGQkQRvalARal~~~p-~ililDEpts 125 (173)
T cd03246 98 SGGQRQRLGLARALYGNP-RILVLDEPNS 125 (173)
T ss_pred CHHHHHHHHHHHHHHCCC-CEEEEECCCC
T ss_conf 699999999999982799-9999968766
No 427
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=96.45 E-value=0.011 Score=38.35 Aligned_cols=20 Identities=40% Similarity=0.441 Sum_probs=17.9
Q ss_pred CEEEECCCCCHHHHHHHHHH
Q ss_conf 74896676411668999999
Q gi|254780163|r 227 NPLYVGDPGVGKTAIAEGFA 246 (798)
Q Consensus 227 n~~lvG~~gvGktaive~la 246 (798)
|.+++|.+|+|||+|++.|-
T Consensus 1 ~Il~lGl~~sGKTtil~~l~ 20 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLK 20 (162)
T ss_pred CEEEECCCCCCHHHHHHHHH
T ss_conf 99999999998899999997
No 428
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.33 E-value=0.031 Score=35.24 Aligned_cols=69 Identities=19% Similarity=0.539 Sum_probs=46.6
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCC--CC-CHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 874896676411668999999998548988345201445540467530634--31-237899999998720389839997
Q gi|254780163|r 226 NNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTR--YR-GDFEERIKKIVKEIESYANAILYI 302 (798)
Q Consensus 226 Nn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~--~r-g~fe~r~~~~~~~~~~~~~~ilfi 302 (798)
.+-++.|+||+|||-++-.+|..+.+ +++.++-..+..|+.--+ |. ++.. -..+++.+.+. -.|.|
T Consensus 97 ~gLlF~G~~GTGKThLA~aIan~Li~-------~G~sVlf~t~~dLl~~lr~t~~~~~~~--e~~~l~~l~~~--dLLIi 165 (242)
T PRK07952 97 ASFIFSGKPGTGKNHLAAAICNELLL-------RGKSVLIITVADIMSAMKDTFRNSETS--EEQLLNDLSNV--DLLVI 165 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH-------CCCEEEEEEHHHHHHHHHHHHHCCCCC--HHHHHHHHHCC--CEEEE
T ss_conf 71799789999789999999999998-------799499977999999999998068756--99999986318--98987
Q ss_pred CCH
Q ss_conf 361
Q gi|254780163|r 303 DEI 305 (798)
Q Consensus 303 dei 305 (798)
||+
T Consensus 166 Ddl 168 (242)
T PRK07952 166 DEI 168 (242)
T ss_pred ECC
T ss_conf 301
No 429
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.32 E-value=0.027 Score=35.68 Aligned_cols=26 Identities=35% Similarity=0.424 Sum_probs=18.1
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 87489667641166899999999854
Q gi|254780163|r 226 NNPLYVGDPGVGKTAIAEGFAKQIVD 251 (798)
Q Consensus 226 Nn~~lvG~~gvGktaive~la~~i~~ 251 (798)
+=.++||--|+|||+-+--||..+.+
T Consensus 98 ~Vim~vGlqGsGKTTT~aKLA~~~kk 123 (433)
T PRK00771 98 QTILLVGLQGSGKTTTAAKLARYFQK 123 (433)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 58999737889789999999999997
No 430
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.32 E-value=0.0099 Score=38.77 Aligned_cols=89 Identities=29% Similarity=0.430 Sum_probs=49.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHC--CCCEEEEEHHHHHC--CCCCCHHCCCCCHHCCCCCCCC-----CCHHHHHCCCE
Q ss_conf 068861432003889999987304--77337720688612--4653011047800025644431-----00355515851
Q gi|254780163|r 508 GCYVFSGPTGVGKTEISKQLAFAL--GVQLLRFDMSEYME--RHAVSRLIGAPPGYVGFGQGGI-----LADSVDQNPYS 578 (798)
Q Consensus 508 g~flf~GptGvGKTelak~la~~~--~~~lir~dmsey~e--~~~vs~LiGappGYvG~~egg~-----Lte~vr~~P~s 578 (798)
-.+.++||+|.|||.|.+.++-.. ..--|+++=.+... .....+.+ |||.-=-||+ +..++-.+| .
T Consensus 26 e~~~i~G~nGaGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~~~i----~~v~QLSgGqkqrv~iA~al~~~p-~ 100 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRI----GYVPQLSGGQRQRVALARALLLNP-D 100 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCC----CCCCCCCHHHHHHHHHHHHHHCCC-C
T ss_conf 79999878899989999999588479962899999999979999999406----087668869999999999997099-9
Q ss_pred EEEECCHHH-----CCHHHHHHHHHHHH
Q ss_conf 777404455-----02899999999877
Q gi|254780163|r 579 VVLLDEIEK-----SHPDVLNILLQIMD 601 (798)
Q Consensus 579 Vvl~DEiEK-----Ah~~v~~~llqild 601 (798)
+++|||.-- +...+++++.+.-+
T Consensus 101 ililDEPtsgLD~~~~~~l~~~i~~l~~ 128 (157)
T cd00267 101 LLLLDEPTSGLDPASRERLLELLRELAE 128 (157)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999698766899999999999999996
No 431
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.30 E-value=0.0044 Score=41.30 Aligned_cols=39 Identities=31% Similarity=0.385 Sum_probs=28.6
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHC
Q ss_conf 7874896676411668999999998548988345201445540467530
Q gi|254780163|r 225 KNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIA 273 (798)
Q Consensus 225 KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a 273 (798)
|.=.+++|+.|+|||+++-.||.++ +..|++.|-..+--
T Consensus 4 ~~ii~i~GpTasGKs~la~~la~~~----------~~eIIsaDS~QvYk 42 (304)
T PRK00091 4 PKLIVLVGPTASGKTALAIELAKRL----------NGEIISVDSMQVYR 42 (304)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHC----------CCEEEEECHHHHHC
T ss_conf 9779998988658999999999987----------99899412688749
No 432
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.29 E-value=0.11 Score=31.35 Aligned_cols=167 Identities=17% Similarity=0.152 Sum_probs=89.2
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHE------EEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHC----CCCC
Q ss_conf 489667641166899999999854898834520------144554046753063431237899999998720----3898
Q gi|254780163|r 228 PLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLG------ARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIE----SYAN 297 (798)
Q Consensus 228 ~~lvG~~gvGktaive~la~~i~~~~vp~~l~~------~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~----~~~~ 297 (798)
-++.|++|+||+.++..+|+.+...+.|..-.. --++.+.. .|..-...- +-.+.+.+.+. ..+.
T Consensus 22 yLf~Gp~G~GK~~~A~~~A~~LLc~~~p~~~~~i~~~~HPD~~~i~p----e~k~~~~~I-d~iR~l~~~i~~~p~~g~~ 96 (290)
T PRK05917 22 ILLHGQDLSNLSQYAYELASLILLESSPEAQYKISQKIHPDIHEFFP----EGKGRLHSI-ETPRAIKKQIWIHPYEANY 96 (290)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEECC----CCCCCCCCH-HHHHHHHHHHCCCCCCCCC
T ss_conf 87689998659999999999985789961688987468998599615----777887867-8999999996418646882
Q ss_pred EEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECC-----CCHH
Q ss_conf 3999736166301554443447778888766302--66038873048999998520111432001443068-----7868
Q gi|254780163|r 298 AILYIDEIHTLVGAGSASGISVDASNLLKPALSS--GAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSE-----PSIE 370 (798)
Q Consensus 298 ~ilfideih~ligag~~~g~~~d~an~lkP~L~r--g~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~e-----p~~~ 370 (798)
-|..||+.|.+ +..|+|-|--.|.- ...-+|=.|+..+ +. =+.+-.|-|.|+++- ++.+
T Consensus 97 KV~IId~Ad~M---------n~~AaNALLKtLEEPP~~tvfILit~~~~--~l---LpTI~SRCQ~I~i~~~e~~~i~~e 162 (290)
T PRK05917 97 KIYIIHEADRM---------TLDAISAFLKVLEDPPKHSVIILTSAKPQ--RL---PPTIRSRSLSIHIPGEEKTLPSKE 162 (290)
T ss_pred EEEEECCHHHH---------CHHHHHHHHHHHCCCCCCEEEEEEECCHH--HC---CHHHHHCCCEEECCCCCCCCCCHH
T ss_conf 69997567763---------89999999997347987859999869925--48---237763351167776201347889
Q ss_pred HHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 9999998612766541035121117899999865420155564679889986
Q gi|254780163|r 371 DAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDE 422 (798)
Q Consensus 371 ~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDe 422 (798)
+.-.+.+-...+. .+.....++...++..+.+ +-||+-.+||-
T Consensus 163 ~~~~l~~~a~g~~----~~~~~~~~~k~~~d~~~~~-----~r~k~~~~l~~ 205 (290)
T PRK05917 163 DIAYLIRYAQGKE----SVTEVGQIVKGSADTDKQV-----LRDKTKRMLEV 205 (290)
T ss_pred HHHHHHHHHCCCH----HHHHHHHHHCCHHHHHHHH-----HHHHHHHHHHH
T ss_conf 9999999846973----8889998830127766787-----78999999999
No 433
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=96.28 E-value=0.024 Score=36.06 Aligned_cols=106 Identities=18% Similarity=0.263 Sum_probs=58.7
Q ss_pred EEEEECCCCHHHHHHHHHHHH----HC----CCCEEEEEHHHHHCC--CCCCHHCCCCCHHCCCCCCCCCCH---HHHHC
Q ss_conf 688614320038899999873----04----773377206886124--653011047800025644431003---55515
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLAF----AL----GVQLLRFDMSEYMER--HAVSRLIGAPPGYVGFGQGGILAD---SVDQN 575 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la~----~~----~~~lir~dmsey~e~--~~vs~LiGappGYvG~~egg~Lte---~vr~~ 575 (798)
..+..|+.|+|||-+++.+|. +. ..-.+-+.+.++... -++.-+|-..-.. .+...++ .+..+
T Consensus 2 ~i~i~G~aG~GKTtll~kl~~~wa~g~~~~~~~~vf~~~~r~~~~~~~~sl~~ll~~~~~~----~~~~~~~~~~~~~~~ 77 (165)
T pfam05729 2 TVILQGEAGSGKTTLLQKLALLWAQGKLPQDFDFVFFLPCRELSRSGEASLADLLFSQWPE----PAAPVSEVWAVILEL 77 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHCCCCCCCHHHHHHHHCCC----CCCCHHHHHHHHHHC
T ss_conf 8999827989899999999999986984369728999995670777668999999987677----457637899999839
Q ss_pred CC-EEEEECCHHHCCH---------HHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCH
Q ss_conf 85-1777404455028---------99999999877750217799776125429999424214
Q gi|254780163|r 576 PY-SVVLLDEIEKSHP---------DVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGA 628 (798)
Q Consensus 576 P~-sVvl~DEiEKAh~---------~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~ 628 (798)
|. .+++||-+|.... .|..++..++. .--|.+|-++.||--.+
T Consensus 78 ~~k~L~ilDGlDE~~~~~~~~~~~~~~~~~l~~ll~----------~~~lp~~~vliTsRp~~ 130 (165)
T pfam05729 78 PERVLLILDGLDELASDLGQLDGPLPVLTLLSSLLR----------KKLLPGASLLLTSRPDA 130 (165)
T ss_pred CCCEEEEECCHHHHCCCCCCCCCCCCHHHHHHHHHH----------HCCCCCCEEEEEECCCH
T ss_conf 772899964845514443564445779999999984----------15278864999968037
No 434
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.26 E-value=0.0094 Score=38.93 Aligned_cols=182 Identities=21% Similarity=0.319 Sum_probs=108.9
Q ss_pred CEEEE-CCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCC------------HHHHHHHHHHHHHC
Q ss_conf 74896-676411668999999998548988345201445540467530634312------------37899999998720
Q gi|254780163|r 227 NPLYV-GDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRG------------DFEERIKKIVKEIE 293 (798)
Q Consensus 227 n~~lv-G~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg------------~fe~r~~~~~~~~~ 293 (798)
..+|+ ||||+||+++.-.+|..+++.. .+++-+..--=+.--+.|. --|-.+..|++.+.
T Consensus 83 SvvLlgGePGIGKSTLLLQia~~la~~~-------~~vLYvSGEES~~QIk~RA~RLg~~~~~l~l~set~le~Il~~i~ 155 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRG-------GKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC-------CCEEEEECHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHH
T ss_conf 1799825998868899999999998639-------938998245678999989998587887727884356999999999
Q ss_pred CCCCEEEEECCHHHHHCCC--CCCCCCC-----CHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHCCHHHHHHCEEEEEC
Q ss_conf 3898399973616630155--4443447-----77888876630266-03887304899999852011143200144306
Q gi|254780163|r 294 SYANAILYIDEIHTLVGAG--SASGISV-----DASNLLKPALSSGA-VRCIGSTTYSEYRQFFEKDKALVRRFQKIDVS 365 (798)
Q Consensus 294 ~~~~~ilfideih~ligag--~~~g~~~-----d~an~lkP~L~rg~-~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ 365 (798)
..++-+|.||-|+|+.-.. ++.| +. -++.++.=+=.++- +=+||--|-+. .|.--+.|+.--..|.-=
T Consensus 156 ~~kP~~lIIDSIQT~~~~~~~s~pG-svsQVReca~~L~~~AK~~~i~~~lVGHVTK~G---~iAGPkvLEHmVDtVl~f 231 (372)
T cd01121 156 ELKPDLVIIDSIQTVYSSELTSAPG-SVSQVRECTAELMRFAKERNIPIFIVGHVTKEG---SIAGPKVLEHMVDTVLYF 231 (372)
T ss_pred HHCCCEEEEECHHHCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC---CCCCCHHHEEEEEEEEEE
T ss_conf 7199889995622020377677998-789999999999999986197399998762688---637740310021368875
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCE---ECCHHHHHHHHHHHHHCCCC--CCHHHHHHH
Q ss_conf 8786899999986127665410351---21117899999865420155--564679889
Q gi|254780163|r 366 EPSIEDAIEIVKGIKPYFEEHHQLR---YSKEAIRAAVQLSVRHFTSR--KLPDKAIDV 419 (798)
Q Consensus 366 ep~~~~~~~iL~~~~~~ye~~h~v~---~~~~al~~av~ls~ryi~~r--~lPdkAidl 419 (798)
|-+....++|||..|-||-.-+.+- -++.-|...-+=|.-|+.+| ..|+.||-.
T Consensus 232 Egd~~~~~R~LR~~KNRFG~t~EiGvFeM~~~GL~~V~nPS~~Fl~~~~~~~~Gs~v~~ 290 (372)
T cd01121 232 EGDRHSEYRILRSVKNRFGSTNELGVFEMRENGLREVSNPSELFLSEREEDVPGSAVTV 290 (372)
T ss_pred CCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCEECCCHHHHHHHCCCCCCCCCEEEE
T ss_conf 15776550356741156777540588873168705636856988626988888637998
No 435
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.25 E-value=0.0068 Score=39.95 Aligned_cols=180 Identities=20% Similarity=0.364 Sum_probs=90.1
Q ss_pred CCCCCEEEEECCCCHHHHH-HHHHHHHHC---CCCEEEE-EHHHHHCCCCCCHHCCCCCHHCCCCCC---CCCCHHHHHC
Q ss_conf 7874068861432003889-999987304---7733772-068861246530110478000256444---3100355515
Q gi|254780163|r 504 NKPIGCYVFSGPTGVGKTE-ISKQLAFAL---GVQLLRF-DMSEYMERHAVSRLIGAPPGYVGFGQG---GILADSVDQN 575 (798)
Q Consensus 504 ~rP~g~flf~GptGvGKTe-lak~la~~~---~~~lir~-dmsey~e~~~vs~LiGappGYvG~~eg---g~Lte~vr~~ 575 (798)
.+|-|=.|++||||+|||- ||-.+-+-+ ..+.|+| |==||.-+|.-| ||-== =||.|-- --|=.|+|+-
T Consensus 124 ~~~~GLiLVTGPTGSGKSTTlAsmIDyIN~~~~~HIiTIEDPIEyvh~~~~s-li~QR--EvG~DT~sF~~ALraALReD 200 (350)
T TIGR01420 124 ERPRGLILVTGPTGSGKSTTLASMIDYINKNKAGHIITIEDPIEYVHKNKRS-LINQR--EVGLDTLSFANALRAALRED 200 (350)
T ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCEEEEECCCEE-EEECC--CCCCCHHHHHHHHHHHHCCC
T ss_conf 3669938987688986789999999787403888825631773141047702-45436--24675457999976841028
Q ss_pred CCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 85177740445502899999999877750217799776125429999424214553303689882111488999998728
Q gi|254780163|r 576 PYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFL 655 (798)
Q Consensus 576 P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f 655 (798)
| =|||. |-|.|.. ||. +. ....+...-++..|-..=
T Consensus 201 P-DvILi--------------------GE~RD~E--T~~-----------~A----------L~AAETGHLV~gTLHTns 236 (350)
T TIGR01420 201 P-DVILI--------------------GEMRDLE--TVE-----------LA----------LTAAETGHLVFGTLHTNS 236 (350)
T ss_pred C-CEEEE--------------------ECCCCHH--HHH-----------HH----------HHHHHHCCHHHHHHHHHH
T ss_conf 9-88998--------------------2556278--999-----------99----------987421315676666423
Q ss_pred CHHHHCCCCEEEECCCCCHHHHHH--HHHHHHHHHHHHHHHC----CCE-----EEECHHHHHHHHHCC-CC-----CCC
Q ss_conf 878817768289628899999999--9999999999999866----988-----999889999999718-98-----101
Q gi|254780163|r 656 SPEFLNRLDSIIPFFPLSSDIIRQ--VVHKFIMKLELQLQEK----GIS-----FHFSEEVINWLVSHG-YD-----VKM 718 (798)
Q Consensus 656 ~peflnRid~ii~F~~l~~~~~~~--i~~~~l~~l~~~l~~~----~i~-----l~~~~~~~~~l~~~~-~~-----~~~ 718 (798)
.++=+||| |-|.|....+..+ +......=+.+||-.+ |-. +--|+.+.++|-+.| +. -+-
T Consensus 237 A~~ti~RI---id~FP~~~~~qiR~~La~~L~Av~sQrL~p~~~G~GRv~~~Eil~~Tpav~~lIre~gk~~qi~~~i~~ 313 (350)
T TIGR01420 237 AAKTIERI---IDVFPAEEQEQIRTQLAESLVAVISQRLLPKKNGGGRVLAVEILINTPAVRNLIREEGKTHQIKSVIQT 313 (350)
T ss_pred HHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 88876777---425977566899999987678770005422338962588887521587899960287887689999871
Q ss_pred C-CHHHHHHHHHHHHH
Q ss_conf 5-32679999986235
Q gi|254780163|r 719 G-ARPLERIIKEHVKV 733 (798)
Q Consensus 719 G-AR~l~r~i~~~i~~ 733 (798)
| ++.==.+.++++..
T Consensus 314 G~~~~GM~TfdQ~L~~ 329 (350)
T TIGR01420 314 GRAQLGMQTFDQHLAK 329 (350)
T ss_pred CCCCCCCHHHHHHHHH
T ss_conf 4301110118889999
No 436
>PRK10867 signal recognition particle protein; Provisional
Probab=96.25 E-value=0.025 Score=35.91 Aligned_cols=25 Identities=28% Similarity=0.334 Sum_probs=19.5
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 7489667641166899999999854
Q gi|254780163|r 227 NPLYVGDPGVGKTAIAEGFAKQIVD 251 (798)
Q Consensus 227 n~~lvG~~gvGktaive~la~~i~~ 251 (798)
-.++||--|+|||+-+--||..+-+
T Consensus 102 VIm~vGLqGsGKTTT~aKLA~~lk~ 126 (453)
T PRK10867 102 VVLMAGLQGAGKTTSVGKLGKFLRE 126 (453)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999746888518589999999997
No 437
>KOG0991 consensus
Probab=96.24 E-value=0.019 Score=36.73 Aligned_cols=118 Identities=24% Similarity=0.364 Sum_probs=73.4
Q ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHH-----CCCCEEEEEHHHHHCCCCC--
Q ss_conf 665345899999999987752044565787406886143200388999998730-----4773377206886124653--
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFA-----LGVQLLRFDMSEYMERHAV-- 549 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~-----~~~~lir~dmsey~e~~~v-- 549 (798)
+.++|.++.|+.+..-. .+.+-| .++|.||+|+|||..++.||.. ..++++-+|-|.=.--..|
T Consensus 27 ~dIVGNe~tv~rl~via-------~~gnmP--~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn 97 (333)
T KOG0991 27 QDIVGNEDTVERLSVIA-------KEGNMP--NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRN 97 (333)
T ss_pred HHHHCCHHHHHHHHHHH-------HCCCCC--CEEEECCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCHHHHH
T ss_conf 88217798999999999-------728998--667527999861648999999983806665763205765546089999
Q ss_pred ------CHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEE
Q ss_conf ------01104780002564443100355515851777404455028999999998777502177997761254299994
Q gi|254780163|r 550 ------SRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMT 623 (798)
Q Consensus 550 ------s~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~T 623 (798)
.+=+--||| -|-+|.+||-+-....-+..|-..++ +.-+.|-+.+.
T Consensus 98 ~IK~FAQ~kv~lp~g-----------------rhKIiILDEADSMT~gAQQAlRRtME-----------iyS~ttRFala 149 (333)
T KOG0991 98 KIKMFAQKKVTLPPG-----------------RHKIIILDEADSMTAGAQQALRRTME-----------IYSNTTRFALA 149 (333)
T ss_pred HHHHHHHHHCCCCCC-----------------CEEEEEEECCCHHHHHHHHHHHHHHH-----------HHCCCCHHHHH
T ss_conf 999998720348998-----------------52489961522020689999999999-----------97063200000
Q ss_pred CCCCHHHH
Q ss_conf 24214553
Q gi|254780163|r 624 TNAGALEM 631 (798)
Q Consensus 624 sN~G~~~~ 631 (798)
+|.-...|
T Consensus 150 CN~s~KIi 157 (333)
T KOG0991 150 CNQSEKII 157 (333)
T ss_pred HCCHHHHH
T ss_conf 15421322
No 438
>pfam00931 NB-ARC NB-ARC domain.
Probab=96.24 E-value=0.022 Score=36.34 Aligned_cols=122 Identities=17% Similarity=0.179 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC--C---CCEEEEEHHHHHCCC----CCCHHC
Q ss_conf 8999999999877520445657874068861432003889999987304--7---733772068861246----530110
Q gi|254780163|r 483 EEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL--G---VQLLRFDMSEYMERH----AVSRLI 553 (798)
Q Consensus 483 ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~--~---~~lir~dmsey~e~~----~vs~Li 553 (798)
|+-++.+...+.. .+.-+++.-.+|+.|+|||.||+.+.... . ...+-+.+|.-.... .+.+-+
T Consensus 2 ~~~~~~i~~~L~~-------~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~i~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 74 (285)
T pfam00931 2 EDMIEALIEKLLE-------MSENLGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKTYTEFRLQKDILQEL 74 (285)
T ss_pred HHHHHHHHHHHHC-------CCCCCEEEEEECCCCCCHHHHHHHHHCCHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 6899999999864-------898953999889995639999999971655650598389999797666899999999985
Q ss_pred CCCCHHCCCC-C---CCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECC
Q ss_conf 4780002564-4---4310035551585177740445502899999999877750217799776125429999424
Q gi|254780163|r 554 GAPPGYVGFG-Q---GGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTN 625 (798)
Q Consensus 554 GappGYvG~~-e---gg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN 625 (798)
+...+=.... . -..|.+.++.+. ..|+||.|.. .+.++.+...+..+ +. .+-||+||-
T Consensus 75 ~~~~~~~~~~~~~~l~~~l~~~L~~kr-~LiVLDDVw~--~~~~~~l~~~~~~~----~~-------gSrIIvTTR 136 (285)
T pfam00931 75 GLDDSDWVEKNESELAVKIKEALLRKR-FLLVLDDVWE--KNDWDKIGVPFPDG----EN-------GSRVIVTTR 136 (285)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCC--HHHHHHHHCCCCCC----CC-------CCEEEEECC
T ss_conf 666545555789999999999972796-6999638887--89999973457578----99-------827998557
No 439
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.24 E-value=0.009 Score=39.09 Aligned_cols=41 Identities=27% Similarity=0.449 Sum_probs=26.3
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHH---HHCCCCEEEEEHHHHHC
Q ss_conf 7874068861432003889999987---30477337720688612
Q gi|254780163|r 504 NKPIGCYVFSGPTGVGKTEISKQLA---FALGVQLLRFDMSEYME 545 (798)
Q Consensus 504 ~rP~g~flf~GptGvGKTelak~la---~~~~~~lir~dmsey~e 545 (798)
++|. ++.|+|.||.|||.+|+.|. +..+.+.+.+|.-++.+
T Consensus 22 ~kg~-viWlTGLSGSGKTTlA~~L~~~L~~~~~~~~~LDGD~lR~ 65 (198)
T PRK03846 22 HKGV-VLWFTGLSGSGKSTVAGALEEALHELGVHTYLLDGDNVRH 65 (198)
T ss_pred CCCE-EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHH
T ss_conf 9986-9998799999889999999999997599759977799987
No 440
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.21 E-value=0.017 Score=37.13 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=17.8
Q ss_pred EEEEECCCCHHHHHHHHHHH
Q ss_conf 68861432003889999987
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLA 528 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la 528 (798)
.+-++||||.|||.+.+.++
T Consensus 28 ~~~ivGpSG~GKSTllr~i~ 47 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIA 47 (178)
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99999999983999999998
No 441
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.20 E-value=0.025 Score=35.88 Aligned_cols=93 Identities=20% Similarity=0.318 Sum_probs=55.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHH--CCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCC-----CCHHHHHCCCEEEE
Q ss_conf 6886143200388999998730--4773377206886124653011047800025644431-----00355515851777
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLAFA--LGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGI-----LADSVDQNPYSVVL 581 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la~~--~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~-----Lte~vr~~P~sVvl 581 (798)
.+.++||.|.|||.+.|.|+-. -...-+.++... -.+|+..=-||+ +..++-.+| .|++
T Consensus 28 ~~~l~G~NGsGKTTl~~~l~G~~~~~~G~i~~~~~~-------------~i~y~~QLSgGqkqr~~la~al~~~p-~ili 93 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTV-------------KIGYFEQLSGGEKMRLALAKLLLENP-NLLL 93 (144)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCC-------------EEEEEHHCCHHHHHHHHHHHHHCCCC-CEEE
T ss_conf 999998999849999999848988985099999960-------------89987007999999999999972599-8999
Q ss_pred ECCHHH-CCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCC
Q ss_conf 404455-0289999999987775021779977612542999942421
Q gi|254780163|r 582 LDEIEK-SHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAG 627 (798)
Q Consensus 582 ~DEiEK-Ah~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G 627 (798)
+||--. -.++....+.+.+.+ ++.|+|+-|.|+.
T Consensus 94 LDEPt~~LD~~~~~~i~~~l~~------------~~~tii~vsHd~~ 128 (144)
T cd03221 94 LDEPTNHLDLESIEALEEALKE------------YPGTVILVSHDRY 128 (144)
T ss_pred EECCCCCCCHHHHHHHHHHHHH------------CCCEEEEEECCHH
T ss_conf 9577555899999999999997------------0999999967989
No 442
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=96.20 E-value=0.0092 Score=39.00 Aligned_cols=34 Identities=29% Similarity=0.560 Sum_probs=23.9
Q ss_pred HCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 3458999999999877520445657874068861432003889999987
Q gi|254780163|r 480 YGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLA 528 (798)
Q Consensus 480 ~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la 528 (798)
..|..+++++. +.++ +|++ ||+|+|||.+|-+.|
T Consensus 7 ~~Q~~~~~~l~-------------~~~i-v~~~-GpAGtGKT~la~~~a 40 (205)
T pfam02562 7 LGQKRYVEAIR-------------KNDI-VFGI-GPAGTGKTYLAVAAA 40 (205)
T ss_pred HHHHHHHHHHH-------------CCCE-EEEE-CCCCCCHHHHHHHHH
T ss_conf 88999999971-------------7980-7998-999860999999999
No 443
>KOG1808 consensus
Probab=96.18 E-value=0.12 Score=30.94 Aligned_cols=134 Identities=26% Similarity=0.386 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCC----CC
Q ss_conf 58999999999877520445657874068861432003889999987304773377206886124653011047----80
Q gi|254780163|r 482 QEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGA----PP 557 (798)
Q Consensus 482 Q~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGa----pp 557 (798)
+..-|.....-+.++.. ....| +||-||||.|||-+.+-||...+.+.+|++--|-+ ....+||. +-
T Consensus 421 ~T~~vq~~la~~~~a~~---~~~~p---illqG~tssGKtsii~~la~~~g~~~vrinnheht---d~qeyig~y~~~~~ 491 (1856)
T KOG1808 421 ITPRVQKNLADLARAIS---SGKFP---ILLQGPTSSGKTSIIKELARATGKNIVRINNHEHT---DLQEYIGTYVADDN 491 (1856)
T ss_pred CCHHHHHHHHHHHHHHH---CCCCC---EEEECCCCCCCHHHHHHHHHHHCCCCEEHHCCCCC---HHHHHHHHHEECCC
T ss_conf 46899988999999996---58998---67754767681159999999854673420024633---39999866500788
Q ss_pred HHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHH-CCCCC-CCEEC-CCCEEEEEECCCC
Q ss_conf 00256444310035551585177740445502899999999877750-21779-97761-2542999942421
Q gi|254780163|r 558 GYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGI-LTDQS-GKKIS-FRNVILIMTTNAG 627 (798)
Q Consensus 558 GYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~-ltd~~-Gr~vd-f~n~iii~TsN~G 627 (798)
|=.-+.+ |.|.+|.|+- ..++|||+.-|+.||++.|.+++|+-| |---. -|.|. -.+-.+++|=|.+
T Consensus 492 g~l~fre-g~LV~Alr~G--~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~ 561 (1856)
T KOG1808 492 GDLVFRE-GVLVQALRNG--DWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPP 561 (1856)
T ss_pred CCEEEEH-HHHHHHHHHC--CEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHCCCC
T ss_conf 9725534-6899998708--77984020124067899998404540412563443232247012345430776
No 444
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=96.16 E-value=0.11 Score=31.36 Aligned_cols=51 Identities=25% Similarity=0.240 Sum_probs=25.2
Q ss_pred EECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 966764116689999999985489883452014455404675306343123789999999872038
Q gi|254780163|r 230 YVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESY 295 (798)
Q Consensus 230 lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~ 295 (798)
++-+-|-|||-..--- +..+. .+.+|-.-+.+|+- +..+|++.+++++...
T Consensus 19 itAPTgsGKT~Aa~lp---~l~~~------~~~lyi~P~kAL~~------Dq~~~l~~~~~~~~~~ 69 (357)
T TIGR03158 19 NTAPTGAGKTLAWLTP---LLHGE------NDTIALYPTNALIE------DQTEAIKEFVDVFKPE 69 (357)
T ss_pred EECCCCCCHHHHHHHH---HHHCC------CCEEEECCHHHHHH------HHHHHHHHHHHHHCCC
T ss_conf 9899985699999999---97389------87999777899999------9999999999874423
No 445
>PRK13949 shikimate kinase; Provisional
Probab=96.13 E-value=0.13 Score=30.79 Aligned_cols=68 Identities=22% Similarity=0.484 Sum_probs=37.8
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCC--CHHHHEEEEEEEEHHHHHCCCCCCCH--HHHHHHHHHHHHCCCCCEE
Q ss_conf 7489667641166899999999854898--83452014455404675306343123--7899999998720389839
Q gi|254780163|r 227 NPLYVGDPGVGKTAIAEGFAKQIVDGMV--PDILLGARIFSLDMGNLIAGTRYRGD--FEERIKKIVKEIESYANAI 299 (798)
Q Consensus 227 n~~lvG~~gvGktaive~la~~i~~~~v--p~~l~~~~i~~ld~~~l~ag~~~rg~--fe~r~~~~~~~~~~~~~~i 299 (798)
|.+|||-||+|||+|-..||++.--.=+ ...+. .-...++..+.+- .|| |-+.=..++.++....+.|
T Consensus 3 ~I~LiG~mGsGKstiGk~La~~l~~~fiD~D~~Ie--~~~g~sI~eif~~---~Ge~~FR~~E~~~l~~l~~~~~~V 74 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIE--NRFHKTVGDIFAE---RGEAVFRELERNMLHEVAEFEDVV 74 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHH--HHHCCCHHHHHHH---HCHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 38997999998899999999995999797849999--9859999999998---698999999999999984589839
No 446
>PRK03839 putative kinase; Provisional
Probab=96.12 E-value=0.11 Score=31.29 Aligned_cols=37 Identities=35% Similarity=0.519 Sum_probs=25.5
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCC
Q ss_conf 886143200388999998730477337720688612465
Q gi|254780163|r 510 YVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHA 548 (798)
Q Consensus 510 flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~ 548 (798)
.+.+|.+|||||-+|+.||.-++ +-.+|.+++..++.
T Consensus 3 I~ITGTPGtGKTTva~~La~~lg--~~~i~v~~la~~~~ 39 (180)
T PRK03839 3 IAITGTPGVGKTTISKLLAEKLG--YEYVNLRDFALEKG 39 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC--CEEEEHHHHHHHCC
T ss_conf 99978999998999999999769--87987999999839
No 447
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=96.11 E-value=0.032 Score=35.07 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=21.8
Q ss_pred HCCCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 226778748966764116689999999
Q gi|254780163|r 221 CRRSKNNPLYVGDPGVGKTAIAEGFAK 247 (798)
Q Consensus 221 ~RR~KNn~~lvG~~gvGktaive~la~ 247 (798)
.++++=+.+++|.+|||||+|+..+..
T Consensus 10 ~~~~~~KililG~~~sGKTsll~~l~~ 36 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLG 36 (173)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHCC
T ss_conf 445731899998999788999999839
No 448
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.11 E-value=0.031 Score=35.19 Aligned_cols=37 Identities=30% Similarity=0.236 Sum_probs=27.6
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHH
Q ss_conf 489667641166899999999854898834520144554046
Q gi|254780163|r 228 PLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMG 269 (798)
Q Consensus 228 ~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~ 269 (798)
.+|||++|||||+-+--||.+..... +..-+++.|.-
T Consensus 3 i~lvGptGvGKTTTiaKLA~~~~~~~-----~kV~lit~Dt~ 39 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKG-----KKVLLVAADTY 39 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-----CEEEEEECCCC
T ss_conf 99989999988999999999999769-----92899974887
No 449
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.09 E-value=0.13 Score=30.66 Aligned_cols=195 Identities=22% Similarity=0.356 Sum_probs=122.7
Q ss_pred HHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH--HHC-CCCEEEEEHHHHHCCCCCCHHCC
Q ss_conf 653458999999999877520445657874068861432003889999987--304-77337720688612465301104
Q gi|254780163|r 478 VVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLA--FAL-GVQLLRFDMSEYMERHAVSRLIG 554 (798)
Q Consensus 478 ~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la--~~~-~~~lir~dmsey~e~~~vs~LiG 554 (798)
.++|-|.--+.+++.-++.-.|+. --..|+-|.-|+||+-|.|++- ++. +-.||-++-++..+ |
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~p-----ANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~------L-- 127 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGLP-----ANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLAT------L-- 127 (287)
T ss_pred HHHCCHHHHHHHHHHHHHHHCCCC-----CCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHH------H--
T ss_conf 872731899999998999972886-----523677637777747999999999874177079976888865------7--
Q ss_pred CCCHHCCCCCCCCCCHHHHHCCCEEEEE-CCHHHC-CHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHH--
Q ss_conf 7800025644431003555158517774-044550-289999999987775021779977612542999942421455--
Q gi|254780163|r 555 APPGYVGFGQGGILADSVDQNPYSVVLL-DEIEKS-HPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALE-- 630 (798)
Q Consensus 555 appGYvG~~egg~Lte~vr~~P~sVvl~-DEiEKA-h~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~-- 630 (798)
| .|.+.+|..|.-+|+| |..-=- +-+-+..|=-+|| |-+ .---.|++|.-|||--.-.
T Consensus 128 -p----------~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~Le-G~v------e~rP~NVl~YATSNRRHLl~e 189 (287)
T COG2607 128 -P----------DLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALE-GGV------EGRPANVLFYATSNRRHLLPE 189 (287)
T ss_pred -H----------HHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHC-CCC------CCCCCEEEEEEECCCCCCCCH
T ss_conf -9----------9999996188608999567777778138999999853-885------568870799971587533627
Q ss_pred HHHCCCCCC-CCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE---ECHHHH
Q ss_conf 330368988-2111488999998728878817768289628899999999999999999999986698899---988999
Q gi|254780163|r 631 MSKARIGFG-SSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFH---FSEEVI 706 (798)
Q Consensus 631 ~~~~~~g~~-~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~---~~~~~~ 706 (798)
......+.+ .-...+.+.+.+. |=.|+---+-|.|.+.++..+||+-..+. -++.+. +...|+
T Consensus 190 ~~~dn~~~~~eih~~eaveEKlS------lSDRFGLwL~F~~~~Q~~YL~~V~~~a~~-------~~l~~~~e~l~~eAl 256 (287)
T COG2607 190 DMKDNEGSTGEIHPSEAVEEKLS------LSDRFGLWLSFYPCDQDEYLKIVDHYAKH-------FGLDISDEELHAEAL 256 (287)
T ss_pred HHHHCCCCCCCCCHHHHHHHHHC------HHHHCCEEECCCCCCHHHHHHHHHHHHHH-------CCCCCCHHHHHHHHH
T ss_conf 66427784023580677877625------46423404503687889999999999998-------599988789999999
Q ss_pred HHHHHCCCCC
Q ss_conf 9999718981
Q gi|254780163|r 707 NWLVSHGYDV 716 (798)
Q Consensus 707 ~~l~~~~~~~ 716 (798)
.|-..+|--.
T Consensus 257 ~WAt~rg~RS 266 (287)
T COG2607 257 QWATTRGGRS 266 (287)
T ss_pred HHHHHCCCCC
T ss_conf 9998618984
No 450
>TIGR00958 3a01208 antigen peptide transporter 2; InterPro: IPR005293 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Proteins of this family are involved in the transport of antigens from the cytoplasm to a membrane-bound compartment for association with MHC class I molecules.; GO: 0005215 transporter activity, 0006810 transport.
Probab=96.09 E-value=0.014 Score=37.76 Aligned_cols=91 Identities=30% Similarity=0.517 Sum_probs=55.3
Q ss_pred EEEEECCCCHHHHHHHHHHH-H---------HCCCCEEEEEHH-----------------------------------HH
Q ss_conf 68861432003889999987-3---------047733772068-----------------------------------86
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLA-F---------ALGVQLLRFDMS-----------------------------------EY 543 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la-~---------~~~~~lir~dms-----------------------------------ey 543 (798)
+--++||+|.||+-.|-.|- | -|++++..+|.- |-
T Consensus 561 vvALVGPsGsGKStvaaLL~n~Y~Pt~G~vLlDg~Pl~~y~H~YLH~~V~~VgQEPvLf~gSvr~NIaYGL~~~~T~~~~ 640 (770)
T TIGR00958 561 VVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLSQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTKTPTDEEV 640 (770)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCHHHHCCEECCCEEEEEECCCEECCCCHHHHHHHCCCCCCCHHHH
T ss_conf 59986589983999999998557898656877684613326501000254332054302463166565168999827899
Q ss_pred ----HCCCCCCHHCCCCCHH---CCCCCCCCC----------CHHHHHCCCEEEEECCHHHC-----CHHHHHHHHHHHH
Q ss_conf ----1246530110478000---256444310----------03555158517774044550-----2899999999877
Q gi|254780163|r 544 ----MERHAVSRLIGAPPGY---VGFGQGGIL----------ADSVDQNPYSVVLLDEIEKS-----HPDVLNILLQIMD 601 (798)
Q Consensus 544 ----~e~~~vs~LiGappGY---vG~~egg~L----------te~vr~~P~sVvl~DEiEKA-----h~~v~~~llqild 601 (798)
+..++=+-..+-|-|| || +.|.|| ..|+=|+| .|++|||-==| .-.+-.+|.|.+.
T Consensus 641 ~aaA~~a~ahdFI~~~~~gydT~vG-E~G~qlSgGQKQRiAiARALvR~P-~vLILDEATSALDa~~~~~~e~~lq~A~~ 718 (770)
T TIGR00958 641 TAAAKAANAHDFISELPNGYDTEVG-EKGSQLSGGQKQRIAIARALVRKP-RVLILDEATSALDAESQLEVEQLLQEALS 718 (770)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHCC-EEEEECCHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 9999861376443578898675408-978752303899999998875189-05740001102136654789999999863
No 451
>pfam01745 IPT Isopentenyl transferase. Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid.
Probab=96.06 E-value=0.0065 Score=40.08 Aligned_cols=22 Identities=41% Similarity=0.348 Sum_probs=17.8
Q ss_pred EEEECCCCCHHHHHHHHHHHHH
Q ss_conf 4896676411668999999998
Q gi|254780163|r 228 PLYVGDPGVGKTAIAEGFAKQI 249 (798)
Q Consensus 228 ~~lvG~~gvGktaive~la~~i 249 (798)
.+++|+.|+|||+++-.||+++
T Consensus 4 ~~I~GpT~~GKT~~ai~lA~~~ 25 (232)
T pfam01745 4 YLIWGATCTGKTAEAIALAKET 25 (232)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8997887777169999999995
No 452
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.05 E-value=0.077 Score=32.39 Aligned_cols=110 Identities=17% Similarity=0.191 Sum_probs=49.5
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCC----CCHHH-------HEEEEEEEEHHHHHCCCCCCCHHHH-HHHHHHHHHCCC
Q ss_conf 48966764116689999999985489----88345-------2014455404675306343123789-999999872038
Q gi|254780163|r 228 PLYVGDPGVGKTAIAEGFAKQIVDGM----VPDIL-------LGARIFSLDMGNLIAGTRYRGDFEE-RIKKIVKEIESY 295 (798)
Q Consensus 228 ~~lvG~~gvGktaive~la~~i~~~~----vp~~l-------~~~~i~~ld~~~l~ag~~~rg~fe~-r~~~~~~~~~~~ 295 (798)
.+++|+.|-|||++...++.-..-.. +|..- .....+......| +| |+-|- ++..++......
T Consensus 24 ~iItGpN~sGKSt~Lr~i~l~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-Sg----g~~~~~~l~~~l~~~~~~ 98 (162)
T cd03227 24 TIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQL-SG----GEKELSALALILALASLK 98 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHEEEEEECCCCC-CC----CHHHHHHHHHHHHHCCCC
T ss_conf 9998998775799999999999986326775255542776402305766412000-54----299999999999854248
Q ss_pred CCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHH
Q ss_conf 9839997361663015544434477788887663026603887304899999
Q gi|254780163|r 296 ANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQ 347 (798)
Q Consensus 296 ~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~IgatT~~ey~~ 347 (798)
.+.++.+||+ ++|-......-++..++-++.+| -++|-+|-+.|--.
T Consensus 99 ~~~lillDE~----~~Gtd~~~~~~l~~~i~~~~~~~-~~~i~tTH~~eL~~ 145 (162)
T cd03227 99 PRPLYILDEI----DRGLDPRDGQALAEAILEHLVKG-AQVIVITHLPELAE 145 (162)
T ss_pred CCCEEEECCC----CCCCCHHHHHHHHHHHHHHHHCC-CEEEEECCHHHHHH
T ss_conf 9848996365----57999889999999999999769-98999797399999
No 453
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.05 E-value=0.034 Score=34.91 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=13.6
Q ss_pred EEEECCCCCHHHHHHHHHHHH
Q ss_conf 489667641166899999999
Q gi|254780163|r 228 PLYVGDPGVGKTAIAEGFAKQ 248 (798)
Q Consensus 228 ~~lvG~~gvGktaive~la~~ 248 (798)
..+||+.|.|||+++.-++..
T Consensus 36 vaivG~nGsGKSTL~k~l~Gl 56 (279)
T PRK13635 36 VAIVGHNGSGKSTLAKLLNGL 56 (279)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999999996599999999728
No 454
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.04 E-value=0.049 Score=33.78 Aligned_cols=18 Identities=33% Similarity=0.658 Sum_probs=9.4
Q ss_pred EECCCCHHHHHHHHHHHH
Q ss_conf 614320038899999873
Q gi|254780163|r 512 FSGPTGVGKTEISKQLAF 529 (798)
Q Consensus 512 f~GptGvGKTelak~la~ 529 (798)
..|..|+|||-++.++++
T Consensus 29 i~G~~GtGKsi~~~~~~~ 46 (230)
T PRK08533 29 IEGDESTGKSILSQRLAY 46 (230)
T ss_pred EECCCCCCHHHHHHHHHH
T ss_conf 986899878999999999
No 455
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.01 E-value=0.15 Score=30.40 Aligned_cols=170 Identities=18% Similarity=0.201 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHH
Q ss_conf 17899999999862267787489667641166899999999854898834520144554046753063431237899999
Q gi|254780163|r 208 GRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKK 287 (798)
Q Consensus 208 GRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~ 287 (798)
-|..=+.+.++.+..+.. ..++.|+=+||||.++.-+.+...+ . ..-+...|+-.. .. ++-+-++.
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtllk~l~~~~~~-----~--~iy~~~~d~~~~--~~----~l~d~~~~ 86 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLE-----E--IIYINFDDLRLD--RI----ELLDLLRA 86 (398)
T ss_pred HHHHHHHHHHHHHCCCCC-EEEEECCCCCCHHHHHHHHHHHCCC-----C--EEEEECCCCCCC--HH----HHHHHHHH
T ss_conf 367677998765035785-4999888647789999999974777-----3--599973620001--35----67789999
Q ss_pred HHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECC-HHHHHHHHHCCHHHHHHCEEEEECC
Q ss_conf 998720389839997361663015544434477788887663026603887304-8999998520111432001443068
Q gi|254780163|r 288 IVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTT-YSEYRQFFEKDKALVRRFQKIDVSE 366 (798)
Q Consensus 288 ~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~IgatT-~~ey~~~~e~d~al~rrF~~i~v~e 366 (798)
+.+.-.. +...+|+||||.+= +--+.||...-+|..+++-+++ ..-..+ +--..|..|...+.+.+
T Consensus 87 ~~~~~~~-~~~yifLDEIq~v~----------~W~~~lk~l~d~~~~~v~itgsss~ll~~--~~s~~L~GR~~~~~l~P 153 (398)
T COG1373 87 YIELKER-EKSYIFLDEIQNVP----------DWERALKYLYDRGNLDVLITGSSSSLLSK--EISESLAGRGKDLELYP 153 (398)
T ss_pred HHHHHCC-CCCEEEEEEECCCH----------HHHHHHHHHHCCCCCEEEEECCCHHHHCC--CHHHHCCCCEEEEEECC
T ss_conf 9985222-57459998333761----------08999999975677509998371675413--30232499823789848
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 7868999999861276654103512111789999986542015556467988
Q gi|254780163|r 367 PSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAID 418 (798)
Q Consensus 367 p~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAid 418 (798)
.|..+-+.... + .+... .. -.+-.+|+...-||.--..
T Consensus 154 lSF~Efl~~~~---~------~~~~~----~~-~~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 154 LSFREFLKLKG---E------EIEPS----KL-ELLFEKYLETGGFPESVKA 191 (398)
T ss_pred CCHHHHHHHCC---C------CCCHH----HH-HHHHHHHHHHCCCCHHHHC
T ss_conf 88899864135---2------10025----67-9999998772898566526
No 456
>KOG0482 consensus
Probab=96.00 E-value=0.15 Score=30.36 Aligned_cols=233 Identities=21% Similarity=0.322 Sum_probs=127.9
Q ss_pred HHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCC------CC--EEEEECCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 33421000024665345899999999987752044565787------40--68861432003889999987304773377
Q gi|254780163|r 466 SVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKP------IG--CYVFSGPTGVGKTEISKQLAFALGVQLLR 537 (798)
Q Consensus 466 ~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP------~g--~flf~GptGvGKTelak~la~~~~~~lir 537 (798)
.....|...+.-.|+|+++.-+++.-.+ .|=-+ ++| .| ..++.|-+||-|+.|-|........
T Consensus 331 d~yekLa~SiAPEIyGheDVKKaLLLlL----VGgvd-~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapR---- 401 (721)
T KOG0482 331 DFYEKLAASIAPEIYGHEDVKKALLLLL----VGGVD-KSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPR---- 401 (721)
T ss_pred CHHHHHHHHHCHHHCCCHHHHHHHHHHH----HCCCC-CCCCCCCEEECCEEEEECCCCCHHHHHHHHHHHHCCCC----
T ss_conf 6799998753606306167999999995----17888-88888766625346996389713389999999850766----
Q ss_pred EEHHHHHCCCCCCHHCCCCCHHCCCCCCC-CCCHHHHHCCC----------------EEEEECCHHHCCHHHHHHHHHHH
Q ss_conf 20688612465301104780002564443-10035551585----------------17774044550289999999987
Q gi|254780163|r 538 FDMSEYMERHAVSRLIGAPPGYVGFGQGG-ILADSVDQNPY----------------SVVLLDEIEKSHPDVLNILLQIM 600 (798)
Q Consensus 538 ~dmsey~e~~~vs~LiGappGYvG~~egg-~Lte~vr~~P~----------------sVvl~DEiEKAh~~v~~~llqil 600 (798)
|-|+. |-+-.| -||-+|-+.|- .|-..||++|..-.=-...-.||
T Consensus 402 ---gvYTT---------------GrGSSGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVM 463 (721)
T KOG0482 402 ---GVYTT---------------GRGSSGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVM 463 (721)
T ss_pred ---CCEEC---------------CCCCCCCCCCHHHHCCCCCCEEEECCCEEEECCCCEEEEHHHHHHHHHHHHHHHHHH
T ss_conf ---50303---------------888776551112113777770686066389716965761233323033357999998
Q ss_pred HHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCE---------------
Q ss_conf 77502177997761254299994242145533036898821114889999987288788177682---------------
Q gi|254780163|r 601 DYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDS--------------- 665 (798)
Q Consensus 601 d~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~--------------- 665 (798)
+. ++|+-..+=|--|-|+-...++....-++.-.......+- -.+++.+|.|+|-
T Consensus 464 EQ--------QTISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~N--I~LPaALLSRFDll~Li~D~pdrd~D~~ 533 (721)
T KOG0482 464 EQ--------QTISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQN--INLPAALLSRFDLLWLIQDRPDRDNDLR 533 (721)
T ss_pred HH--------HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHH--CCCCHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 76--------5445634201000505677665447433466866696673--6984889875454642126876433489
Q ss_pred ---------------EEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHC----------CCCC-CCC
Q ss_conf ---------------89628899999999999999999999986698899988999999971----------8981-015
Q gi|254780163|r 666 ---------------IIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSH----------GYDV-KMG 719 (798)
Q Consensus 666 ---------------ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~----------~~~~-~~G 719 (798)
-.-|.||+...+++.+..- +..+=.+.+++.+|++.. ..+. -.-
T Consensus 534 LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~a----------k~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~tt 603 (721)
T KOG0482 534 LAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLA----------KRKNPVVPEALADYITGAYVELRREARSSKDFTYTT 603 (721)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH----------HHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9877675540377997568878979999999997----------543898987999899999999988751368976457
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 3267999998623599999962967688
Q gi|254780163|r 720 ARPLERIIKEHVKVPLADEILFGKLKKG 747 (798)
Q Consensus 720 AR~l~r~i~~~i~~~la~~il~~~~~~g 747 (798)
+|.|-.+++ +...||++=|+..+..+
T Consensus 604 pRtLL~IlR--ls~AlarLRls~~V~~~ 629 (721)
T KOG0482 604 PRTLLGILR--LSTALARLRLSDSVEED 629 (721)
T ss_pred HHHHHHHHH--HHHHHHHHHHCCCCCHH
T ss_conf 899999999--99998876400213344
No 457
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.99 E-value=0.027 Score=35.61 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=27.5
Q ss_pred EEEEECCCCHHHHHHHHHHHH-HC-CCCEEE---EEHHHHHCCCCCCHHCC
Q ss_conf 688614320038899999873-04-773377---20688612465301104
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLAF-AL-GVQLLR---FDMSEYMERHAVSRLIG 554 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la~-~~-~~~lir---~dmsey~e~~~vs~LiG 554 (798)
.+.++||+|.|||-|.+.++- .. ..--|. .|++++.+ +..+.+|
T Consensus 30 ~~aivG~sGsGKSTLl~~l~G~~~p~~G~i~i~g~~i~~~~~--~~~~~i~ 78 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEK--ALSSLIS 78 (178)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCEEHHHHHH--HHHHHEE
T ss_conf 999999998759999999986176678869999998899789--9997208
No 458
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.98 E-value=0.025 Score=35.84 Aligned_cols=151 Identities=15% Similarity=0.238 Sum_probs=75.3
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCC
Q ss_conf 88614320038899999873047733772068861246530110478000256444310035551585177740445502
Q gi|254780163|r 510 YVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSH 589 (798)
Q Consensus 510 flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh 589 (798)
.+.+|++|||||-.++.|+ .++ .-.+.|+||... .+-|-||+++ +-+-+|=+ ++.-
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg--~~~i~l~el~~e---------~~~~~~~de~---------r~s~~vD~---d~~~ 58 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELG--YKVIELNELAKE---------NGLYTEYDEL---------RKSVIVDV---DKLR 58 (180)
T ss_pred EEEECCCCCCHHHHHHHHH-HHC--CCEEEHHHHHHH---------CCCEECCCCC---------CCEEEEEH---HHHH
T ss_conf 7993799986687999999-829--846619999986---------6971143776---------61588667---9999
Q ss_pred HHHHHHHHHHHHHHHCCCCCC-CEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEE
Q ss_conf 899999999877750217799-7761254299994242145533036898821114889999987288788177682896
Q gi|254780163|r 590 PDVLNILLQIMDYGILTDQSG-KKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIP 668 (798)
Q Consensus 590 ~~v~~~llqild~G~ltd~~G-r~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~ 668 (798)
..+-.++ ...+.+.|++= ..+.--+.+|++..|--.-.-.-..-|+..++..+.+..++-..+.-|-+-+.|.++.
T Consensus 59 ~~le~~~---~~~~~Ivd~H~~hl~~~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENveAEi~~vi~~EA~E~~~~v~e 135 (180)
T COG1936 59 KRLEELL---REGSGIVDSHLSHLLPDCDLVVVLRADPEVLYERLKGRGYSEEKILENVEAEILDVILIEAVERFEAVIE 135 (180)
T ss_pred HHHHHHH---CCCCEEEECHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 8888875---0588476126662178788899971898999999987699878988779999999999999973476499
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q ss_conf 28899999999999999999
Q gi|254780163|r 669 FFPLSSDIIRQVVHKFIMKL 688 (798)
Q Consensus 669 F~~l~~~~~~~i~~~~l~~l 688 (798)
|.. +......+++.-++-+
T Consensus 136 vdt-t~~s~ee~~~~i~~ii 154 (180)
T COG1936 136 VDT-TNRSPEEVAEEIIDII 154 (180)
T ss_pred EEC-CCCCHHHHHHHHHHHH
T ss_conf 978-9999999999999997
No 459
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.95 E-value=0.016 Score=37.23 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=8.7
Q ss_pred EEEECCCCCHHHHHHHHHH
Q ss_conf 4896676411668999999
Q gi|254780163|r 228 PLYVGDPGVGKTAIAEGFA 246 (798)
Q Consensus 228 ~~lvG~~gvGktaive~la 246 (798)
..|+|+.|.|||++..-++
T Consensus 33 ~aliG~NGaGKSTLl~~i~ 51 (277)
T PRK13652 33 IAVIGPNGAGKSTLFKHFN 51 (277)
T ss_pred EEEECCCCCHHHHHHHHHH
T ss_conf 9999999947999999996
No 460
>KOG0477 consensus
Probab=95.94 E-value=0.042 Score=34.23 Aligned_cols=136 Identities=19% Similarity=0.281 Sum_probs=76.0
Q ss_pred CHHHHHHHCHHHHHHHHHHHHHHHHCC-CCCCCCCCC--EEEEECCCCHHHHHHHHHHHHHCCCCEEEEEH-------HH
Q ss_conf 002466534589999999998775204-456578740--68861432003889999987304773377206-------88
Q gi|254780163|r 473 KNLGTVVYGQEEAIKKLSSSIKIARAG-LSDPNKPIG--CYVFSGPTGVGKTEISKQLAFALGVQLLRFDM-------SE 542 (798)
Q Consensus 473 ~~l~~~v~GQ~~ai~~v~~~i~~~~~g-l~~~~rP~g--~flf~GptGvGKTelak~la~~~~~~lir~dm-------se 542 (798)
..+.-.|+|.+..-.+|+-++.-.-.- -....|-.| ..|++|-+|+||+..-|-.+.....+.+.--- .-
T Consensus 445 aSiaPsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa 524 (854)
T KOG0477 445 ASIAPSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTA 524 (854)
T ss_pred HHHCCHHHCHHHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCEEE
T ss_conf 75282431458999999999856875688987445144028984699822899999998627531685067754333268
Q ss_pred HHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCH----HHHHHHHH----HHHHHHCCCCCCCEEC
Q ss_conf 612465301104780002564443100355515851777404455028----99999999----8777502177997761
Q gi|254780163|r 543 YMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHP----DVLNILLQ----IMDYGILTDQSGKKIS 614 (798)
Q Consensus 543 y~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~----~v~~~llq----ild~G~ltd~~Gr~vd 614 (798)
|.-+|-|+|=- -=|||-|.-|=+ .|-|.||++|..- .++...-| |=--|..|--++|
T Consensus 525 ~v~KdPvtrEW--------TLEaGALVLADk----GvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqAr--- 589 (854)
T KOG0477 525 YVRKDPVTREW--------TLEAGALVLADK----GVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQAR--- 589 (854)
T ss_pred EEEECCCCCEE--------EECCCEEEECCC----CEEEEEHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHH---
T ss_conf 87517865303--------651672897268----537741211204011015999987512014466689988755---
Q ss_pred CCCEEEEEECCC
Q ss_conf 254299994242
Q gi|254780163|r 615 FRNVILIMTTNA 626 (798)
Q Consensus 615 f~n~iii~TsN~ 626 (798)
|.+|.++|-
T Consensus 590 ---ctvIAAanP 598 (854)
T KOG0477 590 ---CTVIAAANP 598 (854)
T ss_pred ---HHHHEECCC
T ss_conf ---443000277
No 461
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.93 E-value=0.0095 Score=38.89 Aligned_cols=87 Identities=30% Similarity=0.434 Sum_probs=36.4
Q ss_pred EEEEECCCCHHHHHHHHHHH--HHCCCCEEEE-EHHHHHCC--CCCCHHCCCCCHHCCCCCC-----CCCCHHHHHCCCE
Q ss_conf 68861432003889999987--3047733772-06886124--6530110478000256444-----3100355515851
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLA--FALGVQLLRF-DMSEYMER--HAVSRLIGAPPGYVGFGQG-----GILADSVDQNPYS 578 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la--~~~~~~lir~-dmsey~e~--~~vs~LiGappGYvG~~eg-----g~Lte~vr~~P~s 578 (798)
++|++|+||+|||.+.++|. .-.+.+++.+ |-.|.+=+ +.|. |+=++. |.+.| -+|-.++|-+|--
T Consensus 164 NIlIsGgTGSGKTTllnALl~~IP~~eRIvtIEDt~EL~l~~~n~V~-l~~~~~---~~g~~~vt~~~Ll~~aLRmrPDR 239 (343)
T PRK13851 164 TMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVR-LLYSKN---GAGLGAVTAEHLLQASLRMRPDR 239 (343)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEE-EEECCC---CCCCCCCCHHHHHHHHHCCCCCE
T ss_conf 89998889861999999999628965527996115002589999689-996589---88858397999999986079982
Q ss_pred EEEECCHHHCCHHHHHHHHHHHHHH
Q ss_conf 7774044550289999999987775
Q gi|254780163|r 579 VVLLDEIEKSHPDVLNILLQIMDYG 603 (798)
Q Consensus 579 Vvl~DEiEKAh~~v~~~llqild~G 603 (798)
|++-|+- ..+.|+ |||.+-.|
T Consensus 240 -IivGEvR--G~EA~d-~L~A~nTG 260 (343)
T PRK13851 240 -ILLGEMR--DDAAWA-YLSEVVSG 260 (343)
T ss_pred -EEEEEEC--CHHHHH-HHHHHHCC
T ss_conf -8998526--699999-99998469
No 462
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.92 E-value=0.046 Score=34.01 Aligned_cols=43 Identities=28% Similarity=0.278 Sum_probs=32.5
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHH--CCCCCHHHHEEEEEEEEHHH
Q ss_conf 6778748966764116689999999985--48988345201445540467
Q gi|254780163|r 223 RSKNNPLYVGDPGVGKTAIAEGFAKQIV--DGMVPDILLGARIFSLDMGN 270 (798)
Q Consensus 223 R~KNn~~lvG~~gvGktaive~la~~i~--~~~vp~~l~~~~i~~ld~~~ 270 (798)
+.+....|||+.|||||+-+--||-+-+ .+. +..-|+.+|-=.
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-----~kVaiITtDtYR 245 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKK-----KKVAIITTDTYR 245 (407)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC-----CCEEEEEECCCH
T ss_conf 468579998998875887999999999753257-----606899714411
No 463
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=95.92 E-value=0.043 Score=34.16 Aligned_cols=37 Identities=24% Similarity=0.173 Sum_probs=26.9
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHH
Q ss_conf 489667641166899999999854898834520144554046
Q gi|254780163|r 228 PLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMG 269 (798)
Q Consensus 228 ~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~ 269 (798)
..|||++|||||+-+--||.+..... +..-+++.|.-
T Consensus 4 i~lvGptGvGKTTTiaKLAa~~~~~~-----~~V~lit~Dt~ 40 (196)
T pfam00448 4 ILLVGLQGSGKTTTIAKLAAYLKKQG-----KKVLLVAADTF 40 (196)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-----CEEEEEECCCC
T ss_conf 99989999988999999999999779-----92899975877
No 464
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=95.91 E-value=0.048 Score=33.86 Aligned_cols=115 Identities=26% Similarity=0.400 Sum_probs=79.7
Q ss_pred CHHHHHHH--HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEE
Q ss_conf 03565442--5887754861122217899999999862267787489667641166899999999854898834520144
Q gi|254780163|r 186 ALSAYCVD--LTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARI 263 (798)
Q Consensus 186 ~LdkFg~D--LTe~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i 263 (798)
.||+|... ||+.+.+- |.. =|+||| |.+.+|--|.|||+++..|=-+|+.-+.| +-||
T Consensus 114 TLDdYV~~gimtaaQ~d~-----------l~~--Av~ar~---NIlv~GGTGSGKTTLaNAlla~I~~l~~P----~dR~ 173 (315)
T TIGR02782 114 TLDDYVEAGIMTAAQRDV-----------LRE--AVAARK---NILVVGGTGSGKTTLANALLAEIAKLNDP----DDRV 173 (315)
T ss_pred CCHHHHHHCCCCHHHHHH-----------HHH--HHHHCC---CEEEECCCCCCHHHHHHHHHHHHHHCCCC----CCEE
T ss_conf 707776404455789999-----------999--997129---88998145885799999999988521699----9618
Q ss_pred EEE-EHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCC-CCCHHHHHHHHHCCCCEEEEEECC
Q ss_conf 554-046753063431237899999998720389839997361663015544434-477788887663026603887304
Q gi|254780163|r 264 FSL-DMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGI-SVDASNLLKPALSSGAVRCIGSTT 341 (798)
Q Consensus 264 ~~l-d~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~-~~d~an~lkP~L~rg~~~~IgatT 341 (798)
+-+ |.+-|.- +.+|.|-| .|+.. ++|.+.+||--|
T Consensus 174 vIiEDT~ElQC--------------------~A~N~V~l-----------rT~d~~Gi~M~~LLk~TL------------ 210 (315)
T TIGR02782 174 VIIEDTAELQC--------------------AAENLVAL-----------RTSDDVGISMTRLLKATL------------ 210 (315)
T ss_pred EEEECCHHHHH--------------------CCCCEEEE-----------ECCCCCCCCHHHHHHHHH------------
T ss_conf 99854713201--------------------37870687-----------448986614788888750------------
Q ss_pred HHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHH
Q ss_conf 899999852011143200144306878689999998
Q gi|254780163|r 342 YSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVK 377 (798)
Q Consensus 342 ~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~ 377 (798)
-| -+| +|-|.|-=-.+|+..|+
T Consensus 211 --Rl----RPD--------RI~VGEVRg~eAL~LLK 232 (315)
T TIGR02782 211 --RL----RPD--------RIIVGEVRGGEALDLLK 232 (315)
T ss_pred --CC----CCC--------CEEEEEECCHHHHHHHH
T ss_conf --05----887--------33563014389999986
No 465
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.90 E-value=0.018 Score=36.97 Aligned_cols=40 Identities=30% Similarity=0.542 Sum_probs=26.0
Q ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCC-CCEEEEEH
Q ss_conf 456578740688614320038899999873047-73377206
Q gi|254780163|r 500 LSDPNKPIGCYVFSGPTGVGKTEISKQLAFALG-VQLLRFDM 540 (798)
Q Consensus 500 l~~~~rP~g~flf~GptGvGKTelak~la~~~~-~~lir~dm 540 (798)
+..+.+|+ ..|..|.|||||+.+|-.||+-++ .+++.-||
T Consensus 86 ~r~~~~pl-iILigGtsGvGKSTlA~~LA~rLgI~~visTD~ 126 (306)
T PRK04220 86 IRKSKEPI-IILIGGASGVGTSTIAFELASRLGIRSVIGTDS 126 (306)
T ss_pred HHCCCCCE-EEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
T ss_conf 85369987-999858998878999999999709883422216
No 466
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=95.88 E-value=0.0086 Score=39.20 Aligned_cols=207 Identities=21% Similarity=0.314 Sum_probs=114.2
Q ss_pred CCCCCEEEEECCCCHHHH-HHHHHHHH--HCCCCEEEE-EHHHHHCCCCCCHHCCCCCHHCCCCCC-CC--------CC-
Q ss_conf 787406886143200388-99999873--047733772-068861246530110478000256444-31--------00-
Q gi|254780163|r 504 NKPIGCYVFSGPTGVGKT-EISKQLAF--ALGVQLLRF-DMSEYMERHAVSRLIGAPPGYVGFGQG-GI--------LA- 569 (798)
Q Consensus 504 ~rP~g~flf~GptGvGKT-elak~la~--~~~~~lir~-dmsey~e~~~vs~LiGappGYvG~~eg-g~--------Lt- 569 (798)
.||-|.+|-+||||+||| -|=-+|+. ..+.|.+++ |==||+= +| || ||
T Consensus 242 ~rpHGIiLVTGPTGSGKtTTLYaaL~~LN~~~~NIlTvEDPVEY~i------------------~GIgQ~Qvn~kIglTF 303 (495)
T TIGR02533 242 KRPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQI------------------EGIGQIQVNPKIGLTF 303 (495)
T ss_pred HCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCEEEEE------------------CCCCEEEECCCCCHHH
T ss_conf 1889618841778985258899999863589971568657824762------------------4876365146543038
Q ss_pred -----HHHHHCCCEEEEECCH---HHCCHHHHHHHHH--HHHHHHCC--CCCC---CEECCCCEEEEEECCCC---HHHH
Q ss_conf -----3555158517774044---5502899999999--87775021--7799---77612542999942421---4553
Q gi|254780163|r 570 -----DSVDQNPYSVVLLDEI---EKSHPDVLNILLQ--IMDYGILT--DQSG---KKISFRNVILIMTTNAG---ALEM 631 (798)
Q Consensus 570 -----e~vr~~P~sVvl~DEi---EKAh~~v~~~llq--ild~G~lt--d~~G---r~vdf~n~iii~TsN~G---~~~~ 631 (798)
.-+||-| =||..=|| |=|.=-|+--|=. ||- +|+ |+.| |-+||-===+++||-+- |+.+
T Consensus 304 A~GLRaILRQDP-DiiMvGEIRD~ETA~IAiQASLTGHLVLS--TLHTNDAAgAvtRL~DMGvEPFL~aSsl~GVLAQRL 380 (495)
T TIGR02533 304 AAGLRAILRQDP-DIIMVGEIRDLETAQIAIQASLTGHLVLS--TLHTNDAAGAVTRLIDMGVEPFLLASSLLGVLAQRL 380 (495)
T ss_pred HHHHHHHHCCCC-CEEEEECCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 888788642799-88998231606899999987643257655--655401544665553258640489999999998633
Q ss_pred HHCCCCCCCCCCHHHHHHHHH--HHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH-CCCE--EEECHHHH
Q ss_conf 303689882111488999998--728878817768289628899999999999999999999986-6988--99988999
Q gi|254780163|r 632 SKARIGFGSSRNDDADKEALR--NFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQE-KGIS--FHFSEEVI 706 (798)
Q Consensus 632 ~~~~~g~~~~~~~~~~~~~l~--~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~-~~i~--l~~~~~~~ 706 (798)
-+. +...-....+...+.++ ..=++++.++-..++.|+|-........ . +.. .||. |-+||+++
T Consensus 381 VRr-lCp~Cke~y~a~~~~~~~~G~~~~~~~~~nGv~~lyr~~GC~~C~~~-----G-----Y~GRtGIyElL~vDD~lr 449 (495)
T TIGR02533 381 VRR-LCPHCKEPYEATDEELALLGISKKEPKKDNGVIILYRPVGCPACNHT-----G-----YRGRTGIYELLLVDDDLR 449 (495)
T ss_pred HHH-CCCCCCCCCCCCHHHHHHCCCCHHHHCCCCCEEEEECCCCCHHHCCC-----C-----CCCCEEEEEEEEECHHHH
T ss_conf 433-15146888998979998548840210357764899778764212788-----8-----835503688674355899
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 999971898101532679999986235999999629676888
Q gi|254780163|r 707 NWLVSHGYDVKMGARPLERIIKEHVKVPLADEILFGKLKKGG 748 (798)
Q Consensus 707 ~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~g~ 748 (798)
..+.+.. ++-.|++.....-..-|-+.=+. ++..|-
T Consensus 450 ~lI~~~~-----~~~~i~~~a~~~GmrtlrddG~~-kv~~G~ 485 (495)
T TIGR02533 450 SLIHSRA-----DEGEIKEIARAKGMRTLRDDGLR-KVLAGI 485 (495)
T ss_pred HHHHCCC-----CHHHHHHHHHHHCCCCHHHHHHH-HHHCCC
T ss_conf 8761688-----48899999987058036899999-997178
No 467
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=95.86 E-value=0.13 Score=30.70 Aligned_cols=28 Identities=29% Similarity=0.268 Sum_probs=21.9
Q ss_pred HHHCCCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 8622677874896676411668999999
Q gi|254780163|r 219 ILCRRSKNNPLYVGDPGVGKTAIAEGFA 246 (798)
Q Consensus 219 IL~RR~KNn~~lvG~~gvGktaive~la 246 (798)
-|-.+++=..+++|.+|+|||+|++.+.
T Consensus 11 ~~f~kk~~kililGl~~sGKTsil~~l~ 38 (182)
T PTZ00133 11 SLLGKKEVRILMVGLDAAGKTTILYKLK 38 (182)
T ss_pred HHHCCCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 9717874799999679988999999996
No 468
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.85 E-value=0.036 Score=34.72 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=28.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHH--HCCCCEEEEEHHHHHC
Q ss_conf 0688614320038899999873--0477337720688612
Q gi|254780163|r 508 GCYVFSGPTGVGKTEISKQLAF--ALGVQLLRFDMSEYME 545 (798)
Q Consensus 508 g~flf~GptGvGKTelak~la~--~~~~~lir~dmsey~e 545 (798)
.+|=.+||||+|||-|+++||- --...-|.||.++...
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~ 73 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAP 73 (252)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC
T ss_conf 7899984898988899999956567888628988840576
No 469
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=95.85 E-value=0.015 Score=37.55 Aligned_cols=36 Identities=31% Similarity=0.518 Sum_probs=17.1
Q ss_pred EEEEECCCCHHHHHHHHHHH---HHCCCCEEEEEHHHHH
Q ss_conf 68861432003889999987---3047733772068861
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLA---FALGVQLLRFDMSEYM 544 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la---~~~~~~lir~dmsey~ 544 (798)
++.|+|.||.|||.+|++|. +..+.+.+.+|.-++.
T Consensus 4 viW~TGLsGsGKTTlA~~l~~~L~~~~~~~~~LDGD~~R 42 (157)
T pfam01583 4 TVWFTGLSGSGKSTIANALERKLFAQGISVYVLDGDNVR 42 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHH
T ss_conf 999889899999999999999999759977997688775
No 470
>pfam00025 Arf ADP-ribosylation factor family. Pfam combines a number of different Prosite families together
Probab=95.85 E-value=0.019 Score=36.82 Aligned_cols=32 Identities=22% Similarity=0.227 Sum_probs=24.6
Q ss_pred HHHHHHCCCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 99986226778748966764116689999999
Q gi|254780163|r 216 TIQILCRRSKNNPLYVGDPGVGKTAIAEGFAK 247 (798)
Q Consensus 216 iiqIL~RR~KNn~~lvG~~gvGktaive~la~ 247 (798)
+.+.+.+.++=..+++|++|||||+++..+..
T Consensus 5 ~~~~~~~~k~~Ki~llG~~~vGKTsll~~~~~ 36 (174)
T pfam00025 5 LLKLLGLNKEMRILILGLDNAGKTTILYKLKL 36 (174)
T ss_pred HHHHHCCCCEEEEEEECCCCCCHHHHHHHHHC
T ss_conf 99985789666999999999988999999954
No 471
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=95.85 E-value=0.051 Score=33.68 Aligned_cols=97 Identities=25% Similarity=0.414 Sum_probs=57.5
Q ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHH---HHHHHHHHHHHCCCCCEEEEECCH
Q ss_conf 89667641166899999999854898834520144554046753063431237---899999998720389839997361
Q gi|254780163|r 229 LYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDF---EERIKKIVKEIESYANAILYIDEI 305 (798)
Q Consensus 229 ~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~f---e~r~~~~~~~~~~~~~~ilfidei 305 (798)
..+|+||||||.++..|..+-....+.+ .+|-- .+++|-+-|=.| -.-+.+.++-++-+.=++|.||
T Consensus 43 avvGPpgvGKtTLiksLvk~ytk~~l~~-i~GPi-------Tvvs~K~rRiTfiEc~nDi~smiD~AKvADlVLl~iD-- 112 (225)
T cd01882 43 AVVGPPGVGKTTLIKSLVKNYTKQNISD-IKGPI-------TVVTGKKRRLTFIECPNDINAMIDIAKVADLVLLLID-- 112 (225)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCC-CCCCE-------EEEECCCEEEEEEECCCHHHHHHHHHHHHHEEEEEEC--
T ss_conf 9989899778899999999985443755-78887-------9994684268999748609999878876433688861--
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 6630155444344777888876630266038873048
Q gi|254780163|r 306 HTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTY 342 (798)
Q Consensus 306 h~ligag~~~g~~~d~an~lkP~L~rg~~~~IgatT~ 342 (798)
++-|-.|.--..|-=.-+-|=-+++|.-|.
T Consensus 113 -------~s~GfEmEtfEfLnilq~hG~PkV~GVltH 142 (225)
T cd01882 113 -------ASFGFEMETFEFLNILQVHGFPRVMGVLTH 142 (225)
T ss_pred -------CCCCEEEEHHHHHHHHHHCCCCCEEEEEEC
T ss_conf -------665535208999999997599943788544
No 472
>KOG1942 consensus
Probab=95.83 E-value=0.015 Score=37.54 Aligned_cols=118 Identities=22% Similarity=0.362 Sum_probs=84.7
Q ss_pred EEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCH
Q ss_conf 17774044550289999999987775021779977612542999942421455330368988211148899999872887
Q gi|254780163|r 578 SVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSP 657 (798)
Q Consensus 578 sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~p 657 (798)
.|++.||+.--+-+.|..|-+.|+.- + .-++|+.||-|..-+.. +.+... -.-.+|
T Consensus 298 GVLFIDEVhMLDiEcFTyL~kalES~---------i---aPivifAsNrG~~~irG-t~d~~s-----------PhGip~ 353 (456)
T KOG1942 298 GVLFIDEVHMLDIECFTYLHKALESP---------I---APIVIFASNRGMCTIRG-TEDILS-----------PHGIPP 353 (456)
T ss_pred CCEEEEEHHHHHHHHHHHHHHHHCCC---------C---CCEEEEECCCCCEEECC-CCCCCC-----------CCCCCH
T ss_conf 62686301324269999999986277---------8---75699962776102217-767878-----------788997
Q ss_pred HHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8817768289628899999999999999999999986698899988999999971898101532679999986235999
Q gi|254780163|r 658 EFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKVPLA 736 (798)
Q Consensus 658 eflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la 736 (798)
+++.|+ -||.-.+.+++++++|+..... . =.+.+++++.++|++.|.+ ++||..++ +..|.+
T Consensus 354 dllDRl-~Iirt~~y~~~e~r~Ii~~Ra~-------~--E~l~~~e~a~~~l~~~gt~-----tsLRy~vq--Ll~p~~ 415 (456)
T KOG1942 354 DLLDRL-LIIRTLPYDEEEIRQIIKIRAQ-------V--EGLQVEEEALDLLAEIGTS-----TSLRYAVQ--LLTPAS 415 (456)
T ss_pred HHHHHE-EEEEECCCCHHHHHHHHHHHHH-------H--HCCEECHHHHHHHHHHCCC-----HHHHHHHH--HCCHHH
T ss_conf 786126-6786036998999999999876-------5--1423228899998760541-----45788988--537888
No 473
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=95.83 E-value=0.052 Score=33.60 Aligned_cols=41 Identities=24% Similarity=0.234 Sum_probs=28.3
Q ss_pred HHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 99998622677874896676411668999999998548988
Q gi|254780163|r 215 RTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVP 255 (798)
Q Consensus 215 riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp 255 (798)
++-+.|--|++=..+++|++|||||+|+..|...-....+|
T Consensus 5 ~~~~~~~~~k~~KililG~~~sGKTsil~~l~~~~~~~~~p 45 (174)
T cd04153 5 SLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSP 45 (174)
T ss_pred HHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 99987658977999999899998899999997399277167
No 474
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=95.82 E-value=0.02 Score=36.50 Aligned_cols=61 Identities=26% Similarity=0.366 Sum_probs=39.4
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 77874896676411668999999998548988345201445540467530634312378999999987203898399973
Q gi|254780163|r 224 SKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYID 303 (798)
Q Consensus 224 ~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfid 303 (798)
+++|.+++.++|.|||.+.-.++.++... ..+.++-.+...|+. ||.+++ ++++|
T Consensus 17 ~~~~~~i~~pTGsGKT~~~~~~i~~~~~~------~~~~lvlvp~~~L~~------Q~~~~~-------------lii~D 71 (103)
T pfam04851 17 EKKRGLIVMATGSGKTLTAAKLIARLLKG------KKKVLFLVPRKDLLE------QALEEF-------------VIIID 71 (103)
T ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHC------CCCEEEEECCHHHHH------HHHHHH-------------HHHHH
T ss_conf 63986999589998799999999999846------992999908299999------999965-------------64601
Q ss_pred CHHHHH
Q ss_conf 616630
Q gi|254780163|r 304 EIHTLV 309 (798)
Q Consensus 304 eih~li 309 (798)
|.|...
T Consensus 72 E~H~~~ 77 (103)
T pfam04851 72 EAHHSS 77 (103)
T ss_pred HHHHCC
T ss_conf 635235
No 475
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR; InterPro: IPR012704 At least five distinct pathways exist for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR which is, in most cases, divergently transcribed from the operon that encodes the genes involved in the methylcitric acid cycle of propionate catabolism. This protein is required for the expression of the proteins involved in this pathway . 2-methylcitric acid, an intermediate in this pathway, has been proposed to be a co-activator of PrpR .; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0019629 propionate catabolic process 2-methylcitrate cycle, 0005737 cytoplasm.
Probab=95.82 E-value=0.03 Score=35.36 Aligned_cols=222 Identities=16% Similarity=0.318 Sum_probs=131.6
Q ss_pred HHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH------HHC-----CCCEEEEEHHHHHCC
Q ss_conf 653458999999999877520445657874068861432003889999987------304-----773377206886124
Q gi|254780163|r 478 VVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLA------FAL-----GVQLLRFDMSEYMER 546 (798)
Q Consensus 478 ~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la------~~~-----~~~lir~dmsey~e~ 546 (798)
-++||+.+.+.|-..|++.- |--++.|..|-||+||=-.|+++- ++- ..+|+-+||.-+.|.
T Consensus 320 dl~G~s~~Me~VR~~v~lYA-------rs~atVLi~GE~GTGKElvAq~~H~EY~~R~~~~~~r~~~pFVAiNCGAi~Es 392 (658)
T TIGR02329 320 DLLGESAAMEQVRALVRLYA-------RSAATVLIEGESGTGKELVAQAIHREYALRYDQLSGRRDRPFVAINCGAIAES 392 (658)
T ss_pred HHCCCCCCHHHHHHHHHHHC-------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHH
T ss_conf 65389821389999998526-------88650675147772289999997599987466650133788468747465688
Q ss_pred CCCCHHCCCCCH-HCCCCCCCC--CCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCC-CCC--CCEECCCCEEE
Q ss_conf 653011047800-025644431--003555158517774044550289999999987775021-779--97761254299
Q gi|254780163|r 547 HAVSRLIGAPPG-YVGFGQGGI--LADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILT-DQS--GKKISFRNVIL 620 (798)
Q Consensus 547 ~~vs~LiGappG-YvG~~egg~--Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~lt-d~~--Gr~vdf~n~ii 620 (798)
===+-|.|=--| |-|.-.||. |.|.-.+ .-++||||=----=.+.=||-||+|=..+ =+. =-.||.| |
T Consensus 393 LLEaELFGYeeGAFTGaRrGG~~GL~E~Ah~---GTLFLDEIGEmPLPLQtRLLRVLeEreV~RvG~~~P~~VDvR---v 466 (658)
T TIGR02329 393 LLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVR---V 466 (658)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCHHHHHCC---CCEEEHHHCCCCCHHHHHHHHHHHCCCEEECCCCCCCEEEEE---E
T ss_conf 8877642676665016776776122220057---951001003578614677777651221476178754024443---4
Q ss_pred EEECCCCHHHHHHCCCCCCCCCCHHHHHHHHH-HHCCHHHHCCCCEE-EECCCC--CHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99424214553303689882111488999998-72887881776828-962889--999999999999999999998669
Q gi|254780163|r 621 IMTTNAGALEMSKARIGFGSSRNDDADKEALR-NFLSPEFLNRLDSI-IPFFPL--SSDIIRQVVHKFIMKLELQLQEKG 696 (798)
Q Consensus 621 i~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~-~~f~peflnRid~i-i~F~~l--~~~~~~~i~~~~l~~l~~~l~~~~ 696 (798)
|.-|.-- ..+.+. -.||-.++=|+.-. |-.=|| -+.|+.-++.-++..-.++--+-.
T Consensus 467 vaAth~~-------------------L~~~v~~GrFR~DLfYRL~~Lri~lPpLR~R~~Di~~La~~~l~~~~rrePr~~ 527 (658)
T TIGR02329 467 VAATHCA-------------------LETAVQQGRFRRDLFYRLSILRIDLPPLRERPDDILPLAAEYLKQALRREPRAA 527 (658)
T ss_pred EECCCHH-------------------HHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 3312222-------------------587985788242289999998514787668644599999999987532251576
Q ss_pred CEEEECHHHHHHHHH-----CCCCCCCCCHHHHHHHHHHH
Q ss_conf 889998899999997-----18981015326799999862
Q gi|254780163|r 697 ISFHFSEEVINWLVS-----HGYDVKMGARPLERIIKEHV 731 (798)
Q Consensus 697 i~l~~~~~~~~~l~~-----~~~~~~~GAR~l~r~i~~~i 731 (798)
..+-+++.+...|+. +.|+=----|.|+.++|+.-
T Consensus 528 l~~P~s~~~~q~L~~~~~~L~~y~WpGNvRELrnl~ERl~ 567 (658)
T TIGR02329 528 LALPLSEAALQELAAVEDALQRYAWPGNVRELRNLVERLA 567 (658)
T ss_pred HCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 5188638999887437889861689984378877999998
No 476
>pfam05621 TniB Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.
Probab=95.81 E-value=0.032 Score=35.16 Aligned_cols=111 Identities=15% Similarity=0.144 Sum_probs=60.9
Q ss_pred CHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH------H---CCCCEEEEEHHHH
Q ss_conf 002466534589999999998775204456578740688614320038899999873------0---4773377206886
Q gi|254780163|r 473 KNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAF------A---LGVQLLRFDMSEY 543 (798)
Q Consensus 473 ~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~------~---~~~~lir~dmsey 543 (798)
.....|-||-+.|...+.+--..... -...|+. ++|++|+||.|||.+++..+. . ...+.+.+.|..-
T Consensus 30 ~i~~~rWIgY~~A~~~L~~Le~Ll~~--P~~~Rmp-~lLlvGdsnnGKT~Iv~rF~~~hp~~~d~~~~~~PVl~vq~P~~ 106 (302)
T pfam05621 30 RIRADRWIGYPRAVEALNRLEALYAW--PNKQRMP-NLLLVGPTNNGKSMIVEKFRRAHPAGSDADQEHIPVLVVQMPSE 106 (302)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHC--CCCCCCC-CEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCC
T ss_conf 97578532778999999999999846--8646887-55887079887899999999967998786667021899976999
Q ss_pred HCC----CCCCHHCCCCCHHCCCCCCCCC----CHHHHHCCCEEEEECCHHHC
Q ss_conf 124----6530110478000256444310----03555158517774044550
Q gi|254780163|r 544 MER----HAVSRLIGAPPGYVGFGQGGIL----ADSVDQNPYSVVLLDEIEKS 588 (798)
Q Consensus 544 ~e~----~~vs~LiGappGYvG~~egg~L----te~vr~~P~sVvl~DEiEKA 588 (798)
-+. .++-.-+|+|-..-+ .-..+ ...+++-.--++.+|||...
T Consensus 107 p~~~~lY~~IL~~l~aP~~~~~--~~~~~~~~~~~ll~~~~vrmLIIDEiHnl 157 (302)
T pfam05621 107 PSVIRFYVALLAAMGAPLRPRP--RLPEMEQLALALLRKVGVRMLVIDELHNV 157 (302)
T ss_pred CCHHHHHHHHHHHHCCCCCCCC--CHHHHHHHHHHHHHHCCCCEEEEECHHHH
T ss_conf 8868999999998378778887--78999999999999749878998543656
No 477
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.031 Score=35.18 Aligned_cols=175 Identities=23% Similarity=0.372 Sum_probs=109.0
Q ss_pred CEEEE-CCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCH------------HHHHHHHHHHHHC
Q ss_conf 74896-6764116689999999985489883452014455404675306343123------------7899999998720
Q gi|254780163|r 227 NPLYV-GDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGD------------FEERIKKIVKEIE 293 (798)
Q Consensus 227 n~~lv-G~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~------------fe~r~~~~~~~~~ 293 (798)
..+|| |+||+||+++.-.+|.++++.. +++-+..--=+.-.+.|.+ -|-.+..|+.++.
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~--------~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG--------KVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHCC--------CEEEEECCCCHHHHHHHHHHHCCCCCCEEEEHHCCHHHHHHHHH
T ss_conf 1799736898779899999999987059--------57999677678999999998289964557741128999999998
Q ss_pred CCCCEEEEECCHHHHHCCC--CCCCCCC-----CHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHCCHH------HHHHC
Q ss_conf 3898399973616630155--4443447-----77888876630266038-873048999998520111------43200
Q gi|254780163|r 294 SYANAILYIDEIHTLVGAG--SASGISV-----DASNLLKPALSSGAVRC-IGSTTYSEYRQFFEKDKA------LVRRF 359 (798)
Q Consensus 294 ~~~~~ilfideih~ligag--~~~g~~~-----d~an~lkP~L~rg~~~~-IgatT~~ey~~~~e~d~a------l~rrF 359 (798)
+...-++.||-|.|+.-.. ++.| +. -++.+..=+=.+|---+ +| |+-||.+ |+.--
T Consensus 166 ~~~p~lvVIDSIQT~~s~~~~SapG-sVsQVRe~t~~L~~~AK~~~i~~fiVG---------HVTKeG~IAGPrvLEHmV 235 (456)
T COG1066 166 QEKPDLVVIDSIQTLYSEEITSAPG-SVSQVREVAAELMRLAKTKNIAIFIVG---------HVTKEGAIAGPRVLEHMV 235 (456)
T ss_pred HCCCCEEEEECCCEECCCCCCCCCC-CHHHHHHHHHHHHHHHHHCCCEEEEEE---------EECCCCCCCCCHHEEEEE
T ss_conf 5499789996541230263357998-589999999999999987597399998---------882466326840043653
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHCCCE---ECCHHHHHHHHHHHHHCCCCC--CHHHHHHH
Q ss_conf 1443068786899999986127665410351---211178999998654201555--64679889
Q gi|254780163|r 360 QKIDVSEPSIEDAIEIVKGIKPYFEEHHQLR---YSKEAIRAAVQLSVRHFTSRK--LPDKAIDV 419 (798)
Q Consensus 360 ~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~---~~~~al~~av~ls~ryi~~r~--lPdkAidl 419 (798)
..|.-=|-+....++|||..|-||-....+- .++.-+.....-|.-|+..|. .|+.||-.
T Consensus 236 DtVlyFEGd~~~~~RiLR~vKNRFG~t~EiGvFeM~~~GL~eV~npS~lFL~er~~~~~GS~v~~ 300 (456)
T COG1066 236 DTVLYFEGDRHSRYRILRSVKNRFGATNELGVFEMTENGLREVSNPSALFLSERGEQTPGSAVVV 300 (456)
T ss_pred EEEEEEECCCCCCEEEEEHHCCCCCCCCCEEEEEEECCCEEEECCCHHHHHHCCCCCCCCCEEEE
T ss_conf 68999830577755650032136776553268898438846803827867422677899867999
No 478
>KOG0055 consensus
Probab=95.80 E-value=0.095 Score=31.73 Aligned_cols=43 Identities=28% Similarity=0.421 Sum_probs=27.2
Q ss_pred CEEEECCCCCHHHHHHHHHHHHH--HCCCCCHHHHEEEEEEEEHHHH
Q ss_conf 74896676411668999999998--5489883452014455404675
Q gi|254780163|r 227 NPLYVGDPGVGKTAIAEGFAKQI--VDGMVPDILLGARIFSLDMGNL 271 (798)
Q Consensus 227 n~~lvG~~gvGktaive~la~~i--~~~~vp~~l~~~~i~~ld~~~l 271 (798)
-+-|||+.|-||++++.-|++-- ..|+| .+-|..+-.+++..|
T Consensus 381 ~valVG~SGsGKST~i~LL~RfydP~~G~V--~iDG~di~~~~~~~L 425 (1228)
T KOG0055 381 TVALVGPSGSGKSTLIQLLARFYDPTSGEV--LIDGEDIRNLNLKWL 425 (1228)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCEE--EECCCCCHHCCHHHH
T ss_conf 899988999879999999997268878659--976856012265999
No 479
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.80 E-value=0.006 Score=40.35 Aligned_cols=126 Identities=22% Similarity=0.193 Sum_probs=71.5
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHC----CCCCHHHH----EEEEEEEEHH-HHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 7787489667641166899999999854----89883452----0144554046-7530634312378999999987203
Q gi|254780163|r 224 SKNNPLYVGDPGVGKTAIAEGFAKQIVD----GMVPDILL----GARIFSLDMG-NLIAGTRYRGDFEERIKKIVKEIES 294 (798)
Q Consensus 224 ~KNn~~lvG~~gvGktaive~la~~i~~----~~vp~~l~----~~~i~~ld~~-~l~ag~~~rg~fe~r~~~~~~~~~~ 294 (798)
.+|+.++.|+-.-|||.....++.-+.= .-||..-. ...+..+... ++-.|.++-..==.|++.+++.+.+
T Consensus 24 ~~~~~iiTGpN~~GKSt~Lk~i~l~~ilaq~G~~vpa~~~~~~~~~i~t~i~~~d~~~~~~S~F~~E~~~~~~il~~~~~ 103 (199)
T cd03283 24 KKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKK 103 (199)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEHHHEEECCCEEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 98589998999986599999999999999968938624478233089999834751224535799999999999997248
Q ss_pred CCCEEEEECCHHHHHCCCCCCCCCCC-HHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHH
Q ss_conf 89839997361663015544434477-7888876630266038873048999998520111
Q gi|254780163|r 295 YANAILYIDEIHTLVGAGSASGISVD-ASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKA 354 (798)
Q Consensus 295 ~~~~ilfideih~ligag~~~g~~~d-~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~a 354 (798)
..+..+.+||+ |.|.....+.. +..+|+-... ....+|-+|-.-|.-.+.+.++.
T Consensus 104 ~~~sLvliDEl----~~GT~~~eg~a~a~a~le~l~~-~~~~~iitTH~~~l~~~~~~~~~ 159 (199)
T cd03283 104 GEPVLFLLDEI----FKGTNSRERQAASAAVLKFLKN-KNTIGIISTHDLELADLLDLDSA 159 (199)
T ss_pred CCCEEEEECCC----CCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHHCCCCC
T ss_conf 98579961432----4799867899999999999986-79879998872898864324877
No 480
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.80 E-value=0.031 Score=35.26 Aligned_cols=20 Identities=40% Similarity=0.762 Sum_probs=17.3
Q ss_pred EEEEECCCCHHHHHHHHHHH
Q ss_conf 68861432003889999987
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLA 528 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la 528 (798)
.+-++||||.|||-|.|.++
T Consensus 27 ~~~iiGpSGsGKSTLlr~i~ 46 (235)
T cd03299 27 YFVILGPTGSGKSVLLETIA 46 (235)
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99999999635999999997
No 481
>TIGR00174 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) .; GO: 0004811 tRNA isopentenyltransferase activity, 0005524 ATP binding, 0008033 tRNA processing.
Probab=95.78 E-value=0.0075 Score=39.65 Aligned_cols=66 Identities=24% Similarity=0.396 Sum_probs=46.0
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHH-----HC----------------------CCC-CCC
Q ss_conf 48966764116689999999985489883452014455404675-----30----------------------634-312
Q gi|254780163|r 228 PLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNL-----IA----------------------GTR-YRG 279 (798)
Q Consensus 228 ~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l-----~a----------------------g~~-~rg 279 (798)
++|+|+-+||||.|.=.||++. |..|++.|-... |+ --+ +-+
T Consensus 2 i~i~GpTAvGKs~L~i~La~~l----------naEiI~~DS~qiYK~~dIgtaKp~~~e~~~ipH~l~Dildp~e~y~~~ 71 (307)
T TIGR00174 2 IVIMGPTAVGKSNLAIQLAKKL----------NAEIISVDSMQIYKGMDIGTAKPSLQERKGIPHHLIDILDPSESYSAA 71 (307)
T ss_pred EEEEECCCCCHHHHHHHHHHHC----------CEEEEECCCHHHHCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCH
T ss_conf 6774088554778999988768----------957874350232237875357889687534981585134712003708
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 378999999987203898399973
Q gi|254780163|r 280 DFEERIKKIVKEIESYANAILYID 303 (798)
Q Consensus 280 ~fe~r~~~~~~~~~~~~~~ilfid 303 (798)
+|++-+...|.++.+.|.++|++=
T Consensus 72 ~F~~~~~~~~~~i~~~Gkipl~VG 95 (307)
T TIGR00174 72 DFQTQALNAIADITARGKIPLLVG 95 (307)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 899999999999985698348868
No 482
>KOG0480 consensus
Probab=95.76 E-value=0.18 Score=29.69 Aligned_cols=228 Identities=17% Similarity=0.188 Sum_probs=129.6
Q ss_pred HHHHHHHCCHHHHHHHCHHHHHHHHHHHHHH---HHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHH
Q ss_conf 2334210000246653458999999999877---5204456578740688614320038899999873047733772068
Q gi|254780163|r 465 DSVLSNLEKNLGTVVYGQEEAIKKLSSSIKI---ARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMS 541 (798)
Q Consensus 465 ~~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~---~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dms 541 (798)
...+.+|-..|--.|+|++..-..|.-.+.= -.++=.-+=|-=-..+.+|-+|.||+.+-|+.+..+..+.-.-
T Consensus 333 ~nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYts--- 409 (764)
T KOG0480 333 ENLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTS--- 409 (764)
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEC---
T ss_conf 22899998763762015389986689998478543578986546773189957997138899999865487315850---
Q ss_pred HHHCCCCCCHHCCCCCHHCCCCCCCCCC-H--HHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCE
Q ss_conf 8612465301104780002564443100-3--555158517774044550289999999987775021779977612542
Q gi|254780163|r 542 EYMERHAVSRLIGAPPGYVGFGQGGILA-D--SVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNV 618 (798)
Q Consensus 542 ey~e~~~vs~LiGappGYvG~~egg~Lt-e--~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~ 618 (798)
-...|.+.|.-| -|--+++|..+ | |+--.-..|--+||++|..-.=+-.++..|+. ++|+...+
T Consensus 410 --GkaSSaAGLTaa---VvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQ--------QtISIaKA 476 (764)
T KOG0480 410 --GKASSAAGLTAA---VVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQ--------QTISIAKA 476 (764)
T ss_pred --CCCCCCCCCEEE---EEECCCCCCEEEECCCEEECCCCEEEECHHCCCCHHHHHHHHHHHHH--------HEEHHEEC
T ss_conf --763443464689---97637777335534737881696688310003570768999999875--------10003302
Q ss_pred EEEEECCCCHHHHHH-CCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEEC-CCCCHHH----HHHHHHHHH-------
Q ss_conf 999942421455330-368988211148899999872887881776828962-8899999----999999999-------
Q gi|254780163|r 619 ILIMTTNAGALEMSK-ARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPF-FPLSSDI----IRQVVHKFI------- 685 (798)
Q Consensus 619 iii~TsN~G~~~~~~-~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F-~~l~~~~----~~~i~~~~l------- 685 (798)
=|+.|-|+-+..++. +.+| +.-.....+.+-+ .|++..+.|+|-+++. ...++.. .++|++++-
T Consensus 477 Gv~aTLnARtSIlAAANPv~-GhYdR~ktl~eNi--~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~ 553 (764)
T KOG0480 477 GVVATLNARTSILAAANPVG-GHYDRKKTLRENI--NMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATE 553 (764)
T ss_pred CEEEEECCHHHHHHHCCCCC-CCCCCCCCHHHHC--CCCCHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 06886222355555327767-7455330066522--77804542222799993578667779999999987436211023
Q ss_pred -------HHHHH--HHHHCCCEEEECHHHHHHHHHC
Q ss_conf -------99999--9986698899988999999971
Q gi|254780163|r 686 -------MKLEL--QLQEKGISFHFSEEVINWLVSH 712 (798)
Q Consensus 686 -------~~l~~--~l~~~~i~l~~~~~~~~~l~~~ 712 (798)
..+.+ +++ |++.=.++.++.+.|++.
T Consensus 554 ~~~~~~~e~vrkYi~yA-R~~~P~ls~ea~~~lve~ 588 (764)
T KOG0480 554 RVCVYTLEQVRKYIRYA-RNFKPKLSKEASEMLVEK 588 (764)
T ss_pred CCCCCCHHHHHHHHHHH-HHCCCCCCHHHHHHHHHH
T ss_conf 25666499999999998-753753248999999999
No 483
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=95.71 E-value=0.011 Score=38.35 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=44.4
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHC----CC--------------C-CHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHH
Q ss_conf 87489667641166899999999854----89--------------8-83452014455404675306343123789999
Q gi|254780163|r 226 NNPLYVGDPGVGKTAIAEGFAKQIVD----GM--------------V-PDILLGARIFSLDMGNLIAGTRYRGDFEERIK 286 (798)
Q Consensus 226 Nn~~lvG~~gvGktaive~la~~i~~----~~--------------v-p~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~ 286 (798)
.=.+++|+.+||||++.-.||+++-. .| . ++.+++..=+-+|+-...- +=.-++|.+...
T Consensus 4 ~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e-~ysa~~f~~~a~ 82 (308)
T COG0324 4 KLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTE-SYSAAEFQRDAL 82 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHCCCCCCCCCCCCHHHHCCCCEEEECCCCCCC-CCCHHHHHHHHH
T ss_conf 3799989887577899999999829928930235531888630799999998589978754568322-554999999999
Q ss_pred HHHHHHCCCCCEEEEE
Q ss_conf 9998720389839997
Q gi|254780163|r 287 KIVKEIESYANAILYI 302 (798)
Q Consensus 287 ~~~~~~~~~~~~ilfi 302 (798)
..++++...|.+-+++
T Consensus 83 ~~i~~i~~rgk~pIlV 98 (308)
T COG0324 83 AAIDDILARGKLPILV 98 (308)
T ss_pred HHHHHHHHCCCCCEEE
T ss_conf 9999999689987997
No 484
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.70 E-value=0.019 Score=36.68 Aligned_cols=36 Identities=28% Similarity=0.273 Sum_probs=21.2
Q ss_pred EEEEECCCCHHHHHHHHHHH---HHCCCCEEEEEHHHHH
Q ss_conf 68861432003889999987---3047733772068861
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLA---FALGVQLLRFDMSEYM 544 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la---~~~~~~lir~dmsey~ 544 (798)
++.|+|.||.|||.+|++|. +..+.+.+.+|.-++.
T Consensus 9 viW~TGLsGSGKTTiA~~l~~~L~~~g~~~~~LDGD~lR 47 (176)
T PRK05541 9 VIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELR 47 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHH
T ss_conf 999789999989999999999999759977998868999
No 485
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.67 E-value=0.036 Score=34.78 Aligned_cols=20 Identities=40% Similarity=0.594 Sum_probs=18.4
Q ss_pred EEEEECCCCHHHHHHHHHHH
Q ss_conf 68861432003889999987
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLA 528 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la 528 (798)
+.|+.||+|+|||-+|-+.+
T Consensus 268 stLi~Gp~GtGKTtla~qFl 287 (501)
T PRK09302 268 IILVSGATGTGKTLLVSKFA 287 (501)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 69998899988899999999
No 486
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.67 E-value=0.064 Score=32.95 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=12.8
Q ss_pred EEEECCCCCHHHHHHHHHHH
Q ss_conf 48966764116689999999
Q gi|254780163|r 228 PLYVGDPGVGKTAIAEGFAK 247 (798)
Q Consensus 228 ~~lvG~~gvGktaive~la~ 247 (798)
..+||+.|.|||+++.-++.
T Consensus 36 ~aiiG~sGsGKSTL~~~l~G 55 (277)
T PRK13642 36 VSIIGQNGSGKSTTARLIDG 55 (277)
T ss_pred EEEECCCCCHHHHHHHHHHC
T ss_conf 99999999689999999963
No 487
>PRK00625 shikimate kinase; Provisional
Probab=95.64 E-value=0.2 Score=29.37 Aligned_cols=129 Identities=19% Similarity=0.241 Sum_probs=63.9
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHH---CCCC----------CCCH--HHHHHHHHHHH
Q ss_conf 7489667641166899999999854898834520144554046753---0634----------3123--78999999987
Q gi|254780163|r 227 NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLI---AGTR----------YRGD--FEERIKKIVKE 291 (798)
Q Consensus 227 n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~---ag~~----------~rg~--fe~r~~~~~~~ 291 (798)
|.+|||-||+|||+|-.-||+++- ..++.+| .++ .|.+ ..|| |-+.=..++.+
T Consensus 2 nI~LIG~mGsGKStiGk~LA~~l~----------~~FvD~D--~~Ie~~~~~~i~~Si~eIf~~~GE~~FR~~E~~~l~~ 69 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS----------LPFFDTD--DLIVSNYHGALYSSPKEIYQAYGEEGFCEEEALALES 69 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC----------CCEEECH--HHHHHHHCCCCCCCHHHHHHHHCHHHHHHHHHHHHHH
T ss_conf 299989999988999999999939----------9957749--9999986865235699999971899999999999997
Q ss_pred HCCCCCEEEEECCHHHHHCCCCCCCCC-CCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCH
Q ss_conf 203898399973616630155444344-777888876630-266038873048999998520111432001443068786
Q gi|254780163|r 292 IESYANAILYIDEIHTLVGAGSASGIS-VDASNLLKPALS-SGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSI 369 (798)
Q Consensus 292 ~~~~~~~ilfideih~ligag~~~g~~-~d~an~lkP~L~-rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~ 369 (798)
+...+. +| +++||. +...|+ .+|. +|.+ +-=-+.+++-.+-+.+++-+ . -.+.
T Consensus 70 l~~~~~----------VI---stGGG~v~~~~n~--~~Lk~~g~v-V~L~~~~e~i~~Rl~~rpl~-~--------~~~~ 124 (173)
T PRK00625 70 LPVIPS----------IV---ALGGGTLMHEESY--DHIRNRGLL-VLLSLPIATIYQRLQKRGLP-E--------RLKK 124 (173)
T ss_pred HCCCCC----------EE---ECCCCCCCCHHHH--HHHHHCCEE-EEEECCHHHHHHHHHCCCCC-C--------CCCC
T ss_conf 324896----------89---7488501789999--999968999-99839999999998269987-7--------7883
Q ss_pred HHHH-HHHHHHHHHHHHHCCCEEC
Q ss_conf 8999-9998612766541035121
Q gi|254780163|r 370 EDAI-EIVKGIKPYFEEHHQLRYS 392 (798)
Q Consensus 370 ~~~~-~iL~~~~~~ye~~h~v~~~ 392 (798)
.+.+ +++..-.+.|++.-...|+
T Consensus 125 ~~~l~~l~~eR~~lY~~~AD~iI~ 148 (173)
T PRK00625 125 TPSLEEILTQRIDRMREIADYIFS 148 (173)
T ss_pred HHHHHHHHHHHHHHHHHHCCEEEE
T ss_conf 579999999999999997999996
No 488
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=95.64 E-value=0.018 Score=36.86 Aligned_cols=114 Identities=25% Similarity=0.379 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHHHHHHHC--CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHC-------
Q ss_conf 11222178999999998622--677874896676411668999999998548988345201445540467530-------
Q gi|254780163|r 203 VDILVGRHEEINRTIQILCR--RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIA------- 273 (798)
Q Consensus 203 LDPVIGRd~EI~riiqIL~R--R~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a------- 273 (798)
.+-+||+...++++++.... ++-.+++|-||.|+||--++..+-+.=- =+++.++.++-++|-.
T Consensus 222 ~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~-------R~~kPfV~~NCAAlPesLlESEL 294 (550)
T COG3604 222 VGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSP-------RRDKPFVKLNCAALPESLLESEL 294 (550)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC-------CCCCCCEEEECCCCCHHHHHHHH
T ss_conf 45623069999999999998726898079845888538999999987375-------55798666312225378888887
Q ss_pred ---------CC--CCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCE--------
Q ss_conf ---------63--43123789999999872038983999736166301554443447778888766302660--------
Q gi|254780163|r 274 ---------GT--RYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAV-------- 334 (798)
Q Consensus 274 ---------g~--~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~-------- 334 (798)
|+ .-+|-||- .+| =-||.|||--| ++..--=|--+|..|||
T Consensus 295 FGHeKGAFTGA~~~r~GrFEl----------AdG-GTLFLDEIGel---------PL~lQaKLLRvLQegEieRvG~~r~ 354 (550)
T COG3604 295 FGHEKGAFTGAINTRRGRFEL----------ADG-GTLFLDEIGEL---------PLALQAKLLRVLQEGEIERVGGDRT 354 (550)
T ss_pred HCCCCCCCCCCHHCCCCCEEE----------CCC-CEEECHHHCCC---------CHHHHHHHHHHHHHCCEEECCCCCE
T ss_conf 453322333510146763565----------579-75760220367---------8778899999986365253479963
Q ss_pred -----EEEEECCHH
Q ss_conf -----388730489
Q gi|254780163|r 335 -----RCIGSTTYS 343 (798)
Q Consensus 335 -----~~IgatT~~ 343 (798)
|+|+||.-+
T Consensus 355 ikVDVRiIAATNRD 368 (550)
T COG3604 355 IKVDVRVIAATNRD 368 (550)
T ss_pred EEEEEEEEECCCHH
T ss_conf 67778998213530
No 489
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.63 E-value=0.032 Score=35.14 Aligned_cols=20 Identities=20% Similarity=0.424 Sum_probs=16.7
Q ss_pred EEEEECCCCHHHHHHHHHHH
Q ss_conf 68861432003889999987
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLA 528 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la 528 (798)
.+.++||||+|||-|-+.++
T Consensus 26 ~~~i~GpSGsGKSTLL~~i~ 45 (206)
T TIGR03608 26 MVAIVGESGSGKSTLLNIIG 45 (206)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998799970999999997
No 490
>PRK03839 putative kinase; Provisional
Probab=95.63 E-value=0.052 Score=33.59 Aligned_cols=59 Identities=22% Similarity=0.345 Sum_probs=34.3
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCC----CCCHH---HHHHHHHHHHHCCCCCE
Q ss_conf 4896676411668999999998548988345201445540467530634----31237---89999999872038983
Q gi|254780163|r 228 PLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTR----YRGDF---EERIKKIVKEIESYANA 298 (798)
Q Consensus 228 ~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~----~rg~f---e~r~~~~~~~~~~~~~~ 298 (798)
.++.|-||||||++..-||.+. +.++ ++++.++..-. |-+++ +.++...+++....+++
T Consensus 3 I~ITGTPGtGKTTva~~La~~l----------g~~~--i~v~~la~~~~~~~~~d~~~~iD~d~l~~~~~~~~~~~~~ 68 (180)
T PRK03839 3 IAITGTPGVGKTTISKLLAEKL----------GYEY--VNLRDFALEKGIGEEKDDELEIDVDELAYFVEEEFKGKNV 68 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHH----------CCEE--EEHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCE
T ss_conf 9997899999899999999976----------9879--8799999983998676775046599999999987348988
No 491
>KOG0058 consensus
Probab=95.62 E-value=0.03 Score=35.35 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=23.7
Q ss_pred EEEEECCCCHHHHHHHHHHH-HHC-CCCEEE---EEHHHHH
Q ss_conf 68861432003889999987-304-773377---2068861
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLA-FAL-GVQLLR---FDMSEYM 544 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la-~~~-~~~lir---~dmsey~ 544 (798)
+--++||+|.||+-+|..|- |.. ..--|- .|.++|.
T Consensus 496 ~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~ 536 (716)
T KOG0058 496 VVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDIN 536 (716)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCEEHHHCC
T ss_conf 79998899988899999999736888873877883456418
No 492
>CHL00026 ycf2 Ycf2
Probab=95.60 E-value=0.11 Score=31.38 Aligned_cols=108 Identities=16% Similarity=0.262 Sum_probs=65.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCC---------------------CC
Q ss_conf 688614320038899999873047733772068861246530110478000256444---------------------31
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQG---------------------GI 567 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~eg---------------------g~ 567 (798)
-.|+.||.|+|.+.|.|.||-.+-.++|++.+..+- -.-|.||...+.. -.
T Consensus 1632 GILlIGsieTGRSYLVK~LAanSYvPlI~I~lnklL--------~nkp~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 1703 (2286)
T CHL00026 1632 GILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFL--------DNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELEL 1703 (2286)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCEEEECHHHHH--------CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
T ss_conf 527978876666899998774263740896389984--------138643455543332233322210010000001120
Q ss_pred -------------------CC---HHHHHCCCEEEEECCHHHCC---HHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEE
Q ss_conf -------------------00---35551585177740445502---899999999877750217799776125429999
Q gi|254780163|r 568 -------------------LA---DSVDQNPYSVVLLDEIEKSH---PDVLNILLQIMDYGILTDQSGKKISFRNVILIM 622 (798)
Q Consensus 568 -------------------Lt---e~vr~~P~sVvl~DEiEKAh---~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~ 622 (798)
|| |-.++..=|+|-...|.--. |+. ++|.+|=+=.=+|.. +.+-+|.+||.
T Consensus 1704 ~t~~~~~~~~~~~~i~~~~i~LqFELAk~MSPCIIWIpnIHeLnvnd~~~--l~LglL~n~ls~d~e--~~strNilVIA 1779 (2286)
T CHL00026 1704 LTMMNALTMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNY--LSLGLLVNYLSRDCE--RCSTRNILVIA 1779 (2286)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHCCCCCCCH--HHHHHHHHHHCCCCC--CCCCCCEEEEE
T ss_conf 00000344432333344445788999875498079617676605677621--469999998425643--34524518997
Q ss_pred ECCCCH
Q ss_conf 424214
Q gi|254780163|r 623 TTNAGA 628 (798)
Q Consensus 623 TsN~G~ 628 (798)
.+.+-.
T Consensus 1780 STHiPq 1785 (2286)
T CHL00026 1780 STHIPQ 1785 (2286)
T ss_pred CCCCCC
T ss_conf 067877
No 493
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=95.59 E-value=0.11 Score=31.13 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=25.1
Q ss_pred CCCCCEEE-EECCCCHHHHHHHHHHH--------H-HCCCCEEEEE
Q ss_conf 78740688-61432003889999987--------3-0477337720
Q gi|254780163|r 504 NKPIGCYV-FSGPTGVGKTEISKQLA--------F-ALGVQLLRFD 539 (798)
Q Consensus 504 ~rP~g~fl-f~GptGvGKTelak~la--------~-~~~~~lir~d 539 (798)
+=|.|+.- ++||+|+|||.++-+|| + +.+...+-||
T Consensus 39 Gi~~g~ITEi~G~~gsGKTQlc~qlav~~qlp~~~gg~~g~vvyID 84 (261)
T pfam08423 39 GIETGSITEVFGEFRTGKTQLCHTLCVTCQLPLEMGGGEGKALYID 84 (261)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHCHHHHCCCCCEEEEEE
T ss_conf 8667729999899888789999999999407096569997289993
No 494
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.59 E-value=0.028 Score=35.51 Aligned_cols=84 Identities=25% Similarity=0.317 Sum_probs=47.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHC--CCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCC-----CCHHHHHCCCEEEE
Q ss_conf 68861432003889999987304--773377206886124653011047800025644431-----00355515851777
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLAFAL--GVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGI-----LADSVDQNPYSVVL 581 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la~~~--~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~-----Lte~vr~~P~sVvl 581 (798)
.+-++||+|.|||-|.|.++--. ...-+.+|- ..+ .-.|-|+-. -||+ +..++-++| .++|
T Consensus 27 iv~ilGpNGaGKSTllk~i~G~l~p~~G~i~~~g------~~~----~~~pq~~~L-SGGqrQRv~iAral~~~p-~lll 94 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDG------ITP----VYKPQYIDL-SGGELQRVAIAAALLRNA-TFYL 94 (177)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECC------CCE----ECCCCCCCC-CHHHHHHHHHHHHHHCCC-CEEE
T ss_conf 9999899999999999999688678899466668------612----215551507-989999999999982399-9999
Q ss_pred ECCHHH-----CCHHHHHHHHHHHHHHH
Q ss_conf 404455-----02899999999877750
Q gi|254780163|r 582 LDEIEK-----SHPDVLNILLQIMDYGI 604 (798)
Q Consensus 582 ~DEiEK-----Ah~~v~~~llqild~G~ 604 (798)
|||--- ....+++++-.+-++|.
T Consensus 95 LDEPts~LD~~~r~~i~~~ik~l~~~~~ 122 (177)
T cd03222 95 FDEPSAYLDIEQRLNAARAIRRLSEEGK 122 (177)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 7488653899999999999999999659
No 495
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.58 E-value=0.029 Score=35.42 Aligned_cols=51 Identities=25% Similarity=0.300 Sum_probs=26.8
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 5887754861122217899999999862267787489667641166899999999854
Q gi|254780163|r 194 LTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVD 251 (798)
Q Consensus 194 LTe~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~ 251 (798)
|.+..+.|-+.+ +....+.-+-+.+ -|.+..|..|.|||++...|...|..
T Consensus 120 l~dlv~~g~~t~------~~~~~L~~aV~~r-~nilVsGgTGSGKTTllnaL~~~i~~ 170 (323)
T PRK13833 120 LDDYVRSKVMTE------AQASTIRSAISSR-LNIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HHHHHHCCCCCH------HHHHHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 999987699999------9999999999818-96899917777568999999986402
No 496
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=95.58 E-value=0.0052 Score=40.81 Aligned_cols=65 Identities=26% Similarity=0.510 Sum_probs=38.5
Q ss_pred CCCCCEEEEECCCCHHHHH-HHHHHHH-------HC--CCCEE-------EEEHHHHHCCCCCCHHCCCCCHHCCCCCCC
Q ss_conf 7874068861432003889-9999873-------04--77337-------720688612465301104780002564443
Q gi|254780163|r 504 NKPIGCYVFSGPTGVGKTE-ISKQLAF-------AL--GVQLL-------RFDMSEYMERHAVSRLIGAPPGYVGFGQGG 566 (798)
Q Consensus 504 ~rP~g~flf~GptGvGKTe-lak~la~-------~~--~~~li-------r~dmsey~e~~~vs~LiGappGYvG~~egg 566 (798)
+||-|=.|-+||||+|||= |=-+|.- .+ |++.- .++|.+ + +|-.-..
T Consensus 323 ~kPqGMvLVTGPTGSGKTVSLYTaLniLN~~~~NISTAEDPVEINLpGINQVnvNp---K-------------~GLTFAa 386 (577)
T TIGR02538 323 HKPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVNVNP---K-------------IGLTFAA 386 (577)
T ss_pred HCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEECCCC---C-------------CCCCHHH
T ss_conf 07997288626659841687876311257767450114477246407715120466---7-------------8878799
Q ss_pred CCCHHHHHCCCEEEEECCH
Q ss_conf 1003555158517774044
Q gi|254780163|r 567 ILADSVDQNPYSVVLLDEI 585 (798)
Q Consensus 567 ~Lte~vr~~P~sVvl~DEi 585 (798)
-|=..+||-| =||.-=||
T Consensus 387 ALrSFLRQDP-DIIMVGEI 404 (577)
T TIGR02538 387 ALRSFLRQDP-DIIMVGEI 404 (577)
T ss_pred HHHHHCCCCC-CEEEEECC
T ss_conf 9986406899-88987066
No 497
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=95.58 E-value=0.14 Score=30.50 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=17.6
Q ss_pred EEEECCCCCHHHHHHHHHHHHH
Q ss_conf 4896676411668999999998
Q gi|254780163|r 228 PLYVGDPGVGKTAIAEGFAKQI 249 (798)
Q Consensus 228 ~~lvG~~gvGktaive~la~~i 249 (798)
.+|+|++||||++|.+.|.+..
T Consensus 4 ivl~GPSG~GK~tl~~~L~~~~ 25 (182)
T pfam00625 4 IVLSGPSGVGKSHIKKALLDEY 25 (182)
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9998989999999999999848
No 498
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=95.57 E-value=0.017 Score=37.04 Aligned_cols=46 Identities=30% Similarity=0.565 Sum_probs=33.7
Q ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEEHHHHHCCC
Q ss_conf 5657874068861432003889999987304-7733772068861246
Q gi|254780163|r 501 SDPNKPIGCYVFSGPTGVGKTEISKQLAFAL-GVQLLRFDMSEYMERH 547 (798)
Q Consensus 501 ~~~~rP~g~flf~GptGvGKTelak~la~~~-~~~lir~dmsey~e~~ 547 (798)
....+|. .+++.|++|.|||.+++.+...+ ..+++++|--+|.+.|
T Consensus 7 ~~~~~Pk-ai~laG~pGAGKS~~~~~~~~~~~~~~~v~In~D~~r~~~ 53 (191)
T pfam06414 7 PPQERPV-AVLLGGQPGAGKTELARALLEELGGGNVVRIDPDELRTYH 53 (191)
T ss_pred CCCCCCE-EEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCHHHHHHH
T ss_conf 9876987-9999579988889999999875378993897135878877
No 499
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.56 E-value=0.095 Score=31.71 Aligned_cols=20 Identities=35% Similarity=0.747 Sum_probs=16.7
Q ss_pred EEEEECCCCHHHHHHHHHHH
Q ss_conf 68861432003889999987
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLA 528 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la 528 (798)
....+||+|+|||-|.|.++
T Consensus 29 ~v~i~G~sGsGKSTLl~~l~ 48 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALA 48 (166)
T ss_pred EEEEECCCCCCHHHHHHHHC
T ss_conf 99999589998899999986
No 500
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=95.55 E-value=0.017 Score=37.13 Aligned_cols=110 Identities=19% Similarity=0.231 Sum_probs=60.2
Q ss_pred CCCEEE-EECCCCHHHHHHHHHHHH---HCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEE
Q ss_conf 740688-614320038899999873---0477337720688612465301104780002564443100355515851777
Q gi|254780163|r 506 PIGCYV-FSGPTGVGKTEISKQLAF---ALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVL 581 (798)
Q Consensus 506 P~g~fl-f~GptGvGKTelak~la~---~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl 581 (798)
-.|+.| |+|+||.|||-+|-||.. ..+-....+| ++ -||..=+.=+=
T Consensus 17 h~g~vlWlTGLSGsGKsTiA~Al~~~L~~~G~~~~~LD-----------------------GD------nvR~gL~~dLG 67 (187)
T TIGR00455 17 HRGVVLWLTGLSGSGKSTIANALEKKLEKKGYRVYVLD-----------------------GD------NVRHGLNKDLG 67 (187)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEC-----------------------CC------EEECCCCCCCC
T ss_conf 97389851168856357999999999996697499975-----------------------86------34247788888
Q ss_pred ECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECC------CCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 4044550289999999987775021779977612------5429999424214553303689882111488999998728
Q gi|254780163|r 582 LDEIEKSHPDVLNILLQIMDYGILTDQSGKKISF------RNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFL 655 (798)
Q Consensus 582 ~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf------~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f 655 (798)
|-|= = .+.+-|.|.+ +|++|++||=+ + -....++.+++.+.+
T Consensus 68 FS~~-----------------D--R~eNIRRigEVa~L~~~~G~i~ltsfI-----S------PyR~~R~~vR~~~~~-- 115 (187)
T TIGR00455 68 FSEE-----------------D--RKENIRRIGEVAKLLVRNGVIVLTSFI-----S------PYRADRQMVRELIEE-- 115 (187)
T ss_pred CCHH-----------------H--HCCCCCEEHHHHHHHHHCCEEEEEEEE-----C------CCHHHHHHHHHHHHC--
T ss_conf 8856-----------------7--056883532646777647938998421-----7------766678999887540--
Q ss_pred CHHHHCCCCEEEECCCCCHHHHHH
Q ss_conf 878817768289628899999999
Q gi|254780163|r 656 SPEFLNRLDSIIPFFPLSSDIIRQ 679 (798)
Q Consensus 656 ~peflnRid~ii~F~~l~~~~~~~ 679 (798)
|==++=+|.+=-||.-.+.+.
T Consensus 116 ---~Gl~F~Evfv~~PL~vcE~RD 136 (187)
T TIGR00455 116 ---GGLEFIEVFVKCPLEVCEQRD 136 (187)
T ss_pred ---CCEEEEEEECCCCHHHHCCCC
T ss_conf ---573689972178868632689
Done!