HHsearch alignment for GI: 254780163 and conserved domain: pfam00004
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=99.28 E-value=1.2e-11 Score=102.89 Aligned_cols=115 Identities=34% Similarity=0.524 Sum_probs=80.5
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCC---CCCCHHHHHCCCEEEEECCHH
Q ss_conf 88614320038899999873047733772068861246530110478000256444---310035551585177740445
Q gi|254780163|r 510 YVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQG---GILADSVDQNPYSVVLLDEIE 586 (798)
Q Consensus 510 flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~eg---g~Lte~vr~~P~sVvl~DEiE 586 (798)
T Consensus 1 iLl~GppGtGKT~~a~~la~~~~~~~~~v~~~~~~~------------~~~g~~~~~i~~~f~~a~~~~p-~Il~iDe~d 67 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVS------------KYVGESEKRLRELFEAAKKLAP-CVIFIDEID 67 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCCCC------------CCCCHHHHHHHHHHHHHHHCCC-CEEEECHHH
T ss_conf 987899999999999999999789853324201222------------3345068889999999997499-189831167
Q ss_pred HCCH-----------HHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 5028-----------99999999877750217799776125429999424214553303689882111488999998728
Q gi|254780163|r 587 KSHP-----------DVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFL 655 (798)
Q Consensus 587 KAh~-----------~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f 655 (798)
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~ll~~ld~--------~~~~~~~v~~I~tTN~~-------------------------~~l 114 (131)
T pfam00004 68 ALAGSRGSGGDSESRRVVNQLLTELDG--------FTSSLSKVIVIAATNRP-------------------------DKL 114 (131)
T ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHH--------CCCCCCCEEEEEECCCH-------------------------HHC
T ss_conf 775167888887513268789999850--------22468876999975990-------------------------449
Q ss_pred CHHHH-CCCCEEEECC
Q ss_conf 87881-7768289628
Q gi|254780163|r 656 SPEFL-NRLDSIIPFF 670 (798)
Q Consensus 656 ~pefl-nRid~ii~F~ 670 (798)
T Consensus 115 d~al~r~Rfd~~i~~p 130 (131)
T pfam00004 115 DPALLRGRFDRIIEFP 130 (131)
T ss_pred CHHHHCCCCEEEEEEC
T ss_conf 9779628332899806