HHsearch alignment for GI: 254780163 and conserved domain: pfam00158

>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=97.93  E-value=1.4e-05  Score=59.32  Aligned_cols=127  Identities=20%  Similarity=0.364  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHHHC--CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHH--------HCCC
Q ss_conf             22178999999998622--6778748966764116689999999985489883452014455404675--------3063
Q gi|254780163|r  206 LVGRHEEINRTIQILCR--RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNL--------IAGT  275 (798)
Q Consensus       206 VIGRd~EI~riiqIL~R--R~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l--------~ag~  275 (798)
T Consensus         1 lIG~S~~m~~l~~~i~~~a~~~~pVLI~GE~GtGK~~lAr~IH~~S~r-------~~~pfi~vnc~~~~~~~le~~LFG~   73 (168)
T pfam00158         1 LIGESPAMQEVLELAKRVAPTDATVLITGESGTGKELFARAIHQLSPR-------ADGPFVAVNCAAIPEELLESELFGH   73 (168)
T ss_pred             CEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCC-------CCCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf             973899999999999999588998899899988889999999985243-------5688312567899877999987587


Q ss_pred             CCCCHHH---HHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCC-------------CEEEEEE
Q ss_conf             4312378---99999998720389839997361663015544434477788887663026-------------6038873
Q gi|254780163|r  276 RYRGDFE---ERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSG-------------AVRCIGS  339 (798)
Q Consensus       276 ~~rg~fe---~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg-------------~~~~Iga  339 (798)
T Consensus        74 -~~g~f~ga~~~~~G~---le~A~gGTL~LdeI~~L---------~~~~Q~~Ll~~L~~~~~~~~g~~~~~~~~vRiIas  140 (168)
T pfam00158        74 -EKGAFTGAVSDRKGL---FELADGGTLFLDEIGEL---------PLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAA  140 (168)
T ss_pred             -CCCCCCCCCCCCCCC---EEECCCCEEECCCHHHC---------CHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEEE
T ss_conf             -667668987578996---42269987880244139---------99999999999857969977998458885499996


Q ss_pred             CCHHHHHHHHHCCH
Q ss_conf             04899999852011
Q gi|254780163|r  340 TTYSEYRQFFEKDK  353 (798)
Q Consensus       340 tT~~ey~~~~e~d~  353 (798)
T Consensus       141 t~~~L-~~~v~~G~  153 (168)
T pfam00158       141 TNRDL-EEAVAEGR  153 (168)
T ss_pred             CCCCH-HHHHHCCC
T ss_conf             59889-99988399