HHsearch alignment for GI: 254780163 and conserved domain: pfam00493
>pfam00493 MCM MCM2/3/5 family.
Probab=98.15 E-value=0.00026 Score=50.12 Aligned_cols=175 Identities=21% Similarity=0.298 Sum_probs=89.1
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHH----HHCCC---CCCCHHHHHHHHHHHHHCCC
Q ss_conf 677874896676411668999999998548988345201445540467----53063---43123789999999872038
Q gi|254780163|r 223 RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGN----LIAGT---RYRGDFEERIKKIVKEIESY 295 (798)
Q Consensus 223 R~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~----l~ag~---~~rg~fe~r~~~~~~~~~~~ 295 (798)
T Consensus 55 Rg~ihiLLvGdPG~gKSqlLk~~~~-~~pr---------~~~tsg~~ss~~GLTa~~~~d~~~~~~~leaGal---vlAd 121 (327)
T pfam00493 55 RGDINVLLVGDPGTAKSQLLKYVAK-LAPR---------AVYTSGKGSSAAGLTAAVVRDPDTGEWTLEAGAL---VLAD 121 (327)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH-HCCC---------CEEECCCCCCCCCCEEEEEEECCCCCEEEECCCE---EECC
T ss_conf 3651189846998156099999998-6887---------0883177665677615899806888369836847---7558
Q ss_pred CCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEE---------------EEEECCHHH--HH------HHHHCC
Q ss_conf 9839997361663015544434477788887663026603---------------887304899--99------985201
Q gi|254780163|r 296 ANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVR---------------CIGSTTYSE--YR------QFFEKD 352 (798)
Q Consensus 296 ~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~---------------~IgatT~~e--y~------~~~e~d 352 (798)
T Consensus 122 -~Gv~cIDEfdk~--------~~~d~saL~-EAMEqqtVsIaKaGi~~tL~ar~sVlAaaNP~~g~yd~~~~~~~ni~Lp 191 (327)
T pfam00493 122 -GGVCCIDEFDKM--------NEEDRVAIH-EAMEQQTISIAKAGIVATLNARCSVLAAANPIFGRYDPKKSVAENINLP 191 (327)
T ss_pred -CCEEEEECCCCC--------CHHHHHHHH-HHHHHCEEEEECCCEEEEECCCCEEEEEECCCCCCCCCCCCHHHHCCCC
T ss_conf -982785005558--------876799999-9998681776338538972587179985277677378888988855897
Q ss_pred HHHHHHCEEE--EECCCCHHHHHHHHHHHHHHHHHHC------CCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 1143200144--3068786899999986127665410------3512111789999986542015556467988998
Q gi|254780163|r 353 KALVRRFQKI--DVSEPSIEDAIEIVKGIKPYFEEHH------QLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVID 421 (798)
Q Consensus 353 ~al~rrF~~i--~v~ep~~~~~~~iL~~~~~~ye~~h------~v~~~~~al~~av~ls~ryi~~r~lPdkAidllD 421 (798)
T Consensus 192 ~~lLsRFDLif~l~D~~~~~~D~~ia~~i~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P-~ls~ea~~~i~ 267 (327)
T pfam00493 192 PPLLSRFDLIFVLLDKPDEEKDEELAKHIVDLHRHGEEEEIETEDYVDPELLRKYIAYARENIFP-KLSDEAREKLV 267 (327)
T ss_pred HHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCCHHHHHHHH
T ss_conf 67745010798840689868899999999998744688655568879999999999999852788-77989999999