HHsearch alignment for GI: 254780163 and conserved domain: pfam00910

>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=97.53  E-value=7e-05  Score=54.25  Aligned_cols=95  Identities=26%  Similarity=0.342  Sum_probs=57.1

Q ss_pred             EEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCC---CHHCCCCCCCCCCHHHHHCCCEEEEECCHHH
Q ss_conf             8614320038899999873047733772068861246530110478---0002564443100355515851777404455
Q gi|254780163|r  511 VFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAP---PGYVGFGQGGILADSVDQNPYSVVLLDEIEK  587 (798)
Q Consensus       511 lf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGap---pGYvG~~egg~Lte~vr~~P~sVvl~DEiEK  587 (798)
T Consensus         2 ~l~G~~G~GKS~~a~~la~~~~~~~~------~~~~~~~Y~~~~~~~~wdgY~g--q-------------~vvi~DD~~~   60 (105)
T pfam00910         2 WLYGPPGCGKSTLAKYLARALLDHLG------LPKKDSVYSRNPDDDFWDGYTG--Q-------------PVVIIDDFGQ   60 (105)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHC------CCCCCCEEECCCCCCCCCCCCC--C-------------EEEEEECCCC
T ss_conf             89799989889999999999999837------7878977967887765678899--8-------------5799965777


Q ss_pred             CCHH--HHHHHHHHHHHHHCC----CCCCCEECCCCEEEEEECCC
Q ss_conf             0289--999999987775021----77997761254299994242
Q gi|254780163|r  588 SHPD--VLNILLQIMDYGILT----DQSGKKISFRNVILIMTTNA  626 (798)
Q Consensus       588 Ah~~--v~~~llqild~G~lt----d~~Gr~vdf~n~iii~TsN~  626 (798)
T Consensus        61 ~~~~~~~~~~~~~lvs~~p~~~~ma~le~Kg~~f~s~~vi~tsN~  105 (105)
T pfam00910        61 NPDGPSDEAELIRLVSSTPYPPPMAALEEKGTPFTSKFVIVTSNF  105 (105)
T ss_pred             CCCCCHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEECCC
T ss_conf             888628899999875699838886676148884468889994799