HHsearch alignment for GI: 254780163 and conserved domain: pfam00910
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=97.53 E-value=7e-05 Score=54.25 Aligned_cols=95 Identities=26% Similarity=0.342 Sum_probs=57.1
Q ss_pred EEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCC---CHHCCCCCCCCCCHHHHHCCCEEEEECCHHH
Q ss_conf 8614320038899999873047733772068861246530110478---0002564443100355515851777404455
Q gi|254780163|r 511 VFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAP---PGYVGFGQGGILADSVDQNPYSVVLLDEIEK 587 (798)
Q Consensus 511 lf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGap---pGYvG~~egg~Lte~vr~~P~sVvl~DEiEK 587 (798)
T Consensus 2 ~l~G~~G~GKS~~a~~la~~~~~~~~------~~~~~~~Y~~~~~~~~wdgY~g--q-------------~vvi~DD~~~ 60 (105)
T pfam00910 2 WLYGPPGCGKSTLAKYLARALLDHLG------LPKKDSVYSRNPDDDFWDGYTG--Q-------------PVVIIDDFGQ 60 (105)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHC------CCCCCCEEECCCCCCCCCCCCC--C-------------EEEEEECCCC
T ss_conf 89799989889999999999999837------7878977967887765678899--8-------------5799965777
Q ss_pred CCHH--HHHHHHHHHHHHHCC----CCCCCEECCCCEEEEEECCC
Q ss_conf 0289--999999987775021----77997761254299994242
Q gi|254780163|r 588 SHPD--VLNILLQIMDYGILT----DQSGKKISFRNVILIMTTNA 626 (798)
Q Consensus 588 Ah~~--v~~~llqild~G~lt----d~~Gr~vdf~n~iii~TsN~ 626 (798)
T Consensus 61 ~~~~~~~~~~~~~lvs~~p~~~~ma~le~Kg~~f~s~~vi~tsN~ 105 (105)
T pfam00910 61 NPDGPSDEAELIRLVSSTPYPPPMAALEEKGTPFTSKFVIVTSNF 105 (105)
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEECCC
T ss_conf 888628899999875699838886676148884468889994799