HHsearch alignment for GI: 254780163 and conserved domain: pfam04851
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=95.82 E-value=0.02 Score=36.50 Aligned_cols=61 Identities=26% Similarity=0.366 Sum_probs=39.4
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 77874896676411668999999998548988345201445540467530634312378999999987203898399973
Q gi|254780163|r 224 SKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYID 303 (798)
Q Consensus 224 ~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfid 303 (798)
T Consensus 17 ~~~~~~i~~pTGsGKT~~~~~~i~~~~~~------~~~~lvlvp~~~L~~------Q~~~~~-------------lii~D 71 (103)
T pfam04851 17 EKKRGLIVMATGSGKTLTAAKLIARLLKG------KKKVLFLVPRKDLLE------QALEEF-------------VIIID 71 (103)
T ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHC------CCCEEEEECCHHHHH------HHHHHH-------------HHHHH
T ss_conf 63986999589998799999999999846------992999908299999------999965-------------64601
Q ss_pred CHHHHH
Q ss_conf 616630
Q gi|254780163|r 304 EIHTLV 309 (798)
Q Consensus 304 eih~li 309 (798)
T Consensus 72 E~H~~~ 77 (103)
T pfam04851 72 EAHHSS 77 (103)
T ss_pred HHHHCC
T ss_conf 635235