HHsearch alignment for GI: 254780163 and conserved domain: pfam04851

>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=95.82  E-value=0.02  Score=36.50  Aligned_cols=61  Identities=26%  Similarity=0.366  Sum_probs=39.4

Q ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             77874896676411668999999998548988345201445540467530634312378999999987203898399973
Q gi|254780163|r  224 SKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYID  303 (798)
Q Consensus       224 ~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfid  303 (798)
T Consensus        17 ~~~~~~i~~pTGsGKT~~~~~~i~~~~~~------~~~~lvlvp~~~L~~------Q~~~~~-------------lii~D   71 (103)
T pfam04851        17 EKKRGLIVMATGSGKTLTAAKLIARLLKG------KKKVLFLVPRKDLLE------QALEEF-------------VIIID   71 (103)
T ss_pred             HCCCEEEEECCCCCHHHHHHHHHHHHHHC------CCCEEEEECCHHHHH------HHHHHH-------------HHHHH
T ss_conf             63986999589998799999999999846------992999908299999------999965-------------64601


Q ss_pred             CHHHHH
Q ss_conf             616630
Q gi|254780163|r  304 EIHTLV  309 (798)
Q Consensus       304 eih~li  309 (798)
T Consensus        72 E~H~~~   77 (103)
T pfam04851        72 EAHHSS   77 (103)
T ss_pred             HHHHCC
T ss_conf             635235