>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.

Probab=99.54 E-value=1.9e-13 Score=115.77 Aligned_cols=187 Identities=22% Similarity=0.314 Sum_probs=120.0 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHC--CCCC----CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHH Q ss_conf 548611222178999999998622--6778----7489667641166899999999854898834520144554046753 Q gi|254780163|r 199 KKGKVDILVGRHEEINRTIQILCR--RSKN----NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLI 272 (798) Q Consensus 199 reGKLDPVIGRd~EI~riiqIL~R--R~KN----n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ 272 (798) T Consensus 19 RP~~l~e~vGQehl~~-~l~~~i~a~~~~~~~l~h~lf~GPPG~GKTTlAriiAk~~~----------~~~~~~s~~~i- 86 (234) T pfam05496 19 RPRRLDEYIGQEKVKE-NLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG----------VNIRITSGPAL- 86 (234) T ss_pred CCCCHHHCCCHHHHHH-HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHC----------CCEEEECCHHH- T ss_conf 9897666069499999-99999998874277766278878999988899999998408----------75376142666- Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCE------------------ Q ss_conf 06343123789999999872038983999736166301554443447778888766302660------------------ Q gi|254780163|r 273 AGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAV------------------ 334 (798) Q Consensus 273 ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~------------------ 334 (798) T Consensus 87 ~~~-------~di~~~l~~~~--~~~ILFIDEIHr~---------nK~qqd~Llp~vE~g~i~i~ig~~~~A~~~~~e~P 148 (234) T pfam05496 87 EKP-------GDLAAILTNLE--PGDVLFIDEIHRL---------NRAVEEILYPAMEDFRLDIVIGKGPSARSIRLDLP 148 (234) T ss_pred HHH-------HHHHHHHHHCC--CCCEEEEECHHHC---------CHHHHHHCCCCCCCCEEEEEECCCCCCEEEECCCC T ss_conf 438-------99999998458--9988999665435---------87688744553346169999636766324652689 Q ss_pred --EEEEECCHHHHHHHHHCCHHHHHHCEEEE-ECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCC Q ss_conf --38873048999998520111432001443-068786899999986127665410351211178999998654201555 Q gi|254780163|r 335 --RCIGSTTYSEYRQFFEKDKALVRRFQKID-VSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRK 411 (798) Q Consensus 335 --~~IgatT~~ey~~~~e~d~al~rrF~~i~-v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~ 411 (798) T Consensus 149 ~FtLIgATTe~--~---~l~~pl~sR~~i~~~l~~l~~edl~~il~r~~----~~l~i~i~~eal~~IA~~s~G------ 213 (234) T pfam05496 149 PFTLVGATTRA--G---LLTSPLRDRFGIVLRLEFYSVEELEEIVKRSA----RILGVEIDEEGAAEIARRSRG------ 213 (234) T ss_pred CEEEEEECCCC--C---CCCHHHHHHHHHEEECCCCCHHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHCCC------ T ss_conf 75998521566--6---47777997621124424689999999999999----983999599999999997799------ Q ss_pred CHHHHHHHHHHHHHHHHHH Q ss_conf 6467988998653333211 Q gi|254780163|r 412 LPDKAIDVIDEAGASQILQ 430 (798) Q Consensus 412 lPdkAidllDea~a~~~~~ 430 (798) T Consensus 214 d~R~ALnlLe~v~d~a~~~ 232 (234) T pfam05496 214 TPRIANRLLRRVRDFAQVK 232 (234) T ss_pred CHHHHHHHHHHHHHHHHHH T ss_conf 8999989999999999873

HHsearch alignment for GI: 254780163 and conserved domain: pfam05496