HHsearch alignment for GI: 254780163 and conserved domain: pfam06309

>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=98.72  E-value=4.1e-08  Score=77.48  Aligned_cols=106  Identities=22%  Similarity=0.325  Sum_probs=74.8

Q ss_pred             HHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH-----HHCCCCEEEEEH
Q ss_conf             334210000246653458999999999877520445657874068861432003889999987-----304773377206
Q gi|254780163|r  466 SVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLA-----FALGVQLLRFDM  540 (798)
Q Consensus       466 ~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la-----~~~~~~lir~dm  540 (798)
T Consensus        14 ~~~~~Le~~L~~~lfGQhla~~~v~~al~~~l~~-~~p~KpL-VlSfHG~tGtGKn~vs~liA~~Ly~~G~~S~~Vh~fi   91 (127)
T pfam06309        14 FNYHGLERDLARRLFGQHLVKQLVVRSVKGHWEN-PKPRKPL-VLSFHGWTGTGKNFVAEIIADNLYRDGLRSPYVHHFV   91 (127)
T ss_pred             CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCCCCCE-EEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEC
T ss_conf             8779999999875347798999999999999748-9999974-8870189998798999999999875434787568842


Q ss_pred             HHHHCCCCCCHHCCCCCHHCC-CCC--CCCCCHHHHHCCCEEEEE
Q ss_conf             886124653011047800025-644--431003555158517774
Q gi|254780163|r  541 SEYMERHAVSRLIGAPPGYVG-FGQ--GGILADSVDQNPYSVVLL  582 (798)
Q Consensus       541 sey~e~~~vs~LiGappGYvG-~~e--gg~Lte~vr~~P~sVvl~  582 (798)
T Consensus        92 ~~~hFPh---------~~~v~~YK~~L~~~I~~~v~~C~rslFIF  127 (127)
T pfam06309        92 ATNHFPH---------PKYVELYKVELKNQIRGTLRACQRSIFIF  127 (127)
T ss_pred             CCCCCCC---------HHHHHHHHHHHHHHHHHHHHCCCCCEEEC
T ss_conf             4224897---------68899999999999999996499652319