HHsearch alignment for GI: 254780163 and conserved domain: pfam06309
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=98.72 E-value=4.1e-08 Score=77.48 Aligned_cols=106 Identities=22% Similarity=0.325 Sum_probs=74.8
Q ss_pred HHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH-----HHCCCCEEEEEH
Q ss_conf 334210000246653458999999999877520445657874068861432003889999987-----304773377206
Q gi|254780163|r 466 SVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLA-----FALGVQLLRFDM 540 (798)
Q Consensus 466 ~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la-----~~~~~~lir~dm 540 (798)
T Consensus 14 ~~~~~Le~~L~~~lfGQhla~~~v~~al~~~l~~-~~p~KpL-VlSfHG~tGtGKn~vs~liA~~Ly~~G~~S~~Vh~fi 91 (127)
T pfam06309 14 FNYHGLERDLARRLFGQHLVKQLVVRSVKGHWEN-PKPRKPL-VLSFHGWTGTGKNFVAEIIADNLYRDGLRSPYVHHFV 91 (127)
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCCCCCE-EEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEC
T ss_conf 8779999999875347798999999999999748-9999974-8870189998798999999999875434787568842
Q ss_pred HHHHCCCCCCHHCCCCCHHCC-CCC--CCCCCHHHHHCCCEEEEE
Q ss_conf 886124653011047800025-644--431003555158517774
Q gi|254780163|r 541 SEYMERHAVSRLIGAPPGYVG-FGQ--GGILADSVDQNPYSVVLL 582 (798)
Q Consensus 541 sey~e~~~vs~LiGappGYvG-~~e--gg~Lte~vr~~P~sVvl~ 582 (798)
T Consensus 92 ~~~hFPh---------~~~v~~YK~~L~~~I~~~v~~C~rslFIF 127 (127)
T pfam06309 92 ATNHFPH---------PKYVELYKVELKNQIRGTLRACQRSIFIF 127 (127)
T ss_pred CCCCCCC---------HHHHHHHHHHHHHHHHHHHHCCCCCEEEC
T ss_conf 4224897---------68899999999999999996499652319