HHsearch alignment for GI: 254780163 and conserved domain: pfam07724

>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=100.00  E-value=0  Score=409.41  Aligned_cols=162  Identities=54%  Similarity=0.902  Sum_probs=148.5

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHH---HHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEE
Q ss_conf             874068861432003889999987---30477337720688612465301104780002564443100355515851777
Q gi|254780163|r  505 KPIGCYVFSGPTGVGKTEISKQLA---FALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVL  581 (798)
Q Consensus       505 rP~g~flf~GptGvGKTelak~la---~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl  581 (798)
T Consensus         1 ~p~~~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~~~v~~l~g~~~gyvg~~~~G~l~~~v~~~p~~Vil   80 (168)
T pfam07724         1 RPIGSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSIVL   80 (168)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCEEE
T ss_conf             98379998898998999999999999679853448855756542569998705899872624265078999838984898


Q ss_pred             ECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHC-CCC--CCCCCCHHHHHHHHHHHCCHH
Q ss_conf             40445502899999999877750217799776125429999424214553303-689--882111488999998728878
Q gi|254780163|r  582 LDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKA-RIG--FGSSRNDDADKEALRNFLSPE  658 (798)
Q Consensus       582 ~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~-~~g--~~~~~~~~~~~~~l~~~f~pe  658 (798)
T Consensus        81 lDEIeKa~~~V~~~LL~ild~g~~~d~~g~~v~~~n~i~i~Tsn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PE  160 (168)
T pfam07724        81 IDEIEKAHPGVQNDLLQILEGGTLTDKQGRKVDFRNTLFIMTGNFGSEKISDASRLGKSPDYELLKELVMDLLKKGFIPE  160 (168)
T ss_pred             EHHHHHHCHHHHHHHHHHCCCCCEECCCCCEEECCCEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHH
T ss_conf             65776658999999998705870636999678446479997687372999986304678547999999999998698846


Q ss_pred             HHCCCCEE
Q ss_conf             81776828
Q gi|254780163|r  659 FLNRLDSI  666 (798)
Q Consensus       659 flnRid~i  666 (798)
T Consensus       161 flnRid~i  168 (168)
T pfam07724       161 FLGRLPII  168 (168)
T ss_pred             HHCCCCCC
T ss_conf             73575839