HHsearch alignment for GI: 254780163 and conserved domain: pfam07724
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=100.00 E-value=0 Score=409.41 Aligned_cols=162 Identities=54% Similarity=0.902 Sum_probs=148.5
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHH---HHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEE
Q ss_conf 874068861432003889999987---30477337720688612465301104780002564443100355515851777
Q gi|254780163|r 505 KPIGCYVFSGPTGVGKTEISKQLA---FALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVL 581 (798)
Q Consensus 505 rP~g~flf~GptGvGKTelak~la---~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl 581 (798)
T Consensus 1 ~p~~~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~~~v~~l~g~~~gyvg~~~~G~l~~~v~~~p~~Vil 80 (168)
T pfam07724 1 RPIGSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSIVL 80 (168)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCEEE
T ss_conf 98379998898998999999999999679853448855756542569998705899872624265078999838984898
Q ss_pred ECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHC-CCC--CCCCCCHHHHHHHHHHHCCHH
Q ss_conf 40445502899999999877750217799776125429999424214553303-689--882111488999998728878
Q gi|254780163|r 582 LDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKA-RIG--FGSSRNDDADKEALRNFLSPE 658 (798)
Q Consensus 582 ~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~-~~g--~~~~~~~~~~~~~l~~~f~pe 658 (798)
T Consensus 81 lDEIeKa~~~V~~~LL~ild~g~~~d~~g~~v~~~n~i~i~Tsn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PE 160 (168)
T pfam07724 81 IDEIEKAHPGVQNDLLQILEGGTLTDKQGRKVDFRNTLFIMTGNFGSEKISDASRLGKSPDYELLKELVMDLLKKGFIPE 160 (168)
T ss_pred EHHHHHHCHHHHHHHHHHCCCCCEECCCCCEEECCCEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHH
T ss_conf 65776658999999998705870636999678446479997687372999986304678547999999999998698846
Q ss_pred HHCCCCEE
Q ss_conf 81776828
Q gi|254780163|r 659 FLNRLDSI 666 (798)
Q Consensus 659 flnRid~i 666 (798)
T Consensus 161 flnRid~i 168 (168)
T pfam07724 161 FLGRLPII 168 (168)
T ss_pred HHCCCCCC
T ss_conf 73575839