HHsearch alignment for GI: 254780163 and conserved domain: pfam08298

>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

Probab=98.35  E-value=1.6e-05  Score=58.88  Aligned_cols=109  Identities=21%  Similarity=0.192  Sum_probs=67.4

Q ss_pred             EEEEECCHHHCCHHHHHHHHHHHHHHHCC-CCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             17774044550289999999987775021-77997761254299994242145533036898821114889999987288
Q gi|254780163|r  578 SVVLLDEIEKSHPDVLNILLQIMDYGILT-DQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLS  656 (798)
Q Consensus       578 sVvl~DEiEKAh~~v~~~llqild~G~lt-d~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~  656 (798)
T Consensus       235 Gl~efvE~~K~~~~~L~~lL~atQE~~i~~~~~~~~i~~D-~vIiahsN-e~E~~~-----f------------~~~~~~  295 (358)
T pfam08298       235 GLMEFVEMFKAPIKVLHPLLTATQEGNYNSTEKFSAIPFD-GIILAHSN-ESEWNS-----F------------KSNKNN  295 (358)
T ss_pred             CCEEEHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCEECC-EEEECCCC-HHHHHH-----H------------HCCCCC
T ss_conf             7554098761829999998522124622477875603314-26876898-499998-----7------------448643


Q ss_pred             HHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHH
Q ss_conf             7881776828962889999999999999999999998669889998899999997
Q gi|254780163|r  657 PEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVS  711 (798)
Q Consensus       657 peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~  711 (798)
T Consensus       296 eA~~dR~~~v~vPY~lr~~eE~kIY~k~l~~s~--~----~~~h~APhtl~~aa~  344 (358)
T pfam08298       296 EAFLDRIVVIKVPYCLRVSEEIKIYEKLLKESE--L----ADAHCAPHTLEVAAM  344 (358)
T ss_pred             HHHHCCEEEEECCCCCCHHHHHHHHHHHHHHCC--C----CCCCCCCCHHHHHHH
T ss_conf             466563799967632671789999999863044--6----677829648999999