HHsearch alignment for GI: 254780163 and conserved domain: pfam10431

>pfam10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein. This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA, pfam00004) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit and thereby providing enough binding energy to stabilize the functional assembly. The domain is associated with two Clp_N, pfam02861, at the N-terminus as well as AAA, pfam00004 and AAA_2, pfam07724.
Probab=99.62  E-value=8.9e-15  Score=125.36  Aligned_cols=85  Identities=40%  Similarity=0.762  Sum_probs=79.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             99999999999999999999986698899988999999971898101532679999986235999999629676888489
Q gi|254780163|r  672 LSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKVPLADEILFGKLKKGGGVV  751 (798)
Q Consensus       672 l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~g~~~~  751 (798)
T Consensus         1 L~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~i~~~~~~~~~GAR~l~r~I~~~i~~~la~~il~~~~~~~~~-i   79 (89)
T pfam10431         1 LSKEELRQIVDLQLKRLQKRLAERGITLELTDAAKDWLAEKGYDPEYGARPLRRAIQREIEDPLAEEILSGELKEGDT-V   79 (89)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCE-E
T ss_conf             988999999999999999999978907998689999999835675679478999999999999999998498999799-9


Q ss_pred             EEEEEC
Q ss_conf             999607
Q gi|254780163|r  752 KVSLNP  757 (798)
Q Consensus       752 ~v~~~~  757 (798)
T Consensus        80 ~i~~~~   85 (89)
T pfam10431        80 RVDVDD   85 (89)
T ss_pred             EEEECC
T ss_conf             997158