HHsearch alignment for GI: 254780163 and conserved domain: pfam10431
>pfam10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein. This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA, pfam00004) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit and thereby providing enough binding energy to stabilize the functional assembly. The domain is associated with two Clp_N, pfam02861, at the N-terminus as well as AAA, pfam00004 and AAA_2, pfam07724.
Probab=99.62 E-value=8.9e-15 Score=125.36 Aligned_cols=85 Identities=40% Similarity=0.762 Sum_probs=79.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 99999999999999999999986698899988999999971898101532679999986235999999629676888489
Q gi|254780163|r 672 LSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKVPLADEILFGKLKKGGGVV 751 (798)
Q Consensus 672 l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~g~~~~ 751 (798)
T Consensus 1 L~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~i~~~~~~~~~GAR~l~r~I~~~i~~~la~~il~~~~~~~~~-i 79 (89)
T pfam10431 1 LSKEELRQIVDLQLKRLQKRLAERGITLELTDAAKDWLAEKGYDPEYGARPLRRAIQREIEDPLAEEILSGELKEGDT-V 79 (89)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCE-E
T ss_conf 988999999999999999999978907998689999999835675679478999999999999999998498999799-9
Q ss_pred EEEEEC
Q ss_conf 999607
Q gi|254780163|r 752 KVSLNP 757 (798)
Q Consensus 752 ~v~~~~ 757 (798)
T Consensus 80 ~i~~~~ 85 (89)
T pfam10431 80 RVDVDD 85 (89)
T ss_pred EEEECC
T ss_conf 997158