HHsearch alignment for GI: 254780163 and conserved domain: smart00350
>smart00350 MCM minichromosome maintenance proteins.
Probab=97.86 E-value=0.0013 Score=45.10 Aligned_cols=180 Identities=18% Similarity=0.232 Sum_probs=88.0
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCC---CCCCHHHHHHHHHHHHHCCCCCEE
Q ss_conf 67787489667641166899999999854898834520144554046753063---431237899999998720389839
Q gi|254780163|r 223 RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGT---RYRGDFEERIKKIVKEIESYANAI 299 (798)
Q Consensus 223 R~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~---~~rg~fe~r~~~~~~~~~~~~~~i 299 (798)
T Consensus 234 Rg~ihiLLvGDPGtgKSqlLk~~~~-iaprsvytsG~g-----sS~aGLTaav~rd~~~ge~~leaGA---LVlAD~-Gi 303 (509)
T smart00350 234 RGDINILLLGDPGTAKSQLLKYVEK-TAPRAVYTTGKG-----SSAVGLTAAVTRDPETREFTLEGGA---LVLADN-GV 303 (509)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-HCCCEEEEECCC-----CCCCCCEEEEEECCCCCCEEECCCC---EECCCC-CE
T ss_conf 1541499846998236299999998-588606873444-----5557706899981788837872564---120567-54
Q ss_pred EEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCC---------------EEEEEECCHHHHHHH---------HHCCHHH
Q ss_conf 9973616630155444344777888876630266---------------038873048999998---------5201114
Q gi|254780163|r 300 LYIDEIHTLVGAGSASGISVDASNLLKPALSSGA---------------VRCIGSTTYSEYRQF---------FEKDKAL 355 (798)
Q Consensus 300 lfideih~ligag~~~g~~~d~an~lkP~L~rg~---------------~~~IgatT~~ey~~~---------~e~d~al 355 (798)
T Consensus 304 ccIDEfdKm~--------~~dr~-alhEaMEQQtisiaKaGi~~tL~aR~sVlAAaNP~-~g~yd~~~s~~eni~l~~~L 373 (509)
T smart00350 304 CCIDEFDKMD--------DSDRT-AIHEAMEQQTISIAKAGITTTLNARCSVLAAANPI-GGRYDPKLTPEENIDLPAPI 373 (509)
T ss_pred EEEEEHHHCC--------HHHHH-HHHHHHHHCEEEEECCCEEEEEECCCEEEEEECCC-CCCCCCCCCHHHHCCCCHHH
T ss_conf 7852132078--------77899-99999974877874375179985573599865565-56378889999946898035
Q ss_pred HHHCEEEE--ECCCCHHHHHHHHHHHHHHHH-------HHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 32001443--068786899999986127665-------410351211178999998654201555646798899865
Q gi|254780163|r 356 VRRFQKID--VSEPSIEDAIEIVKGIKPYFE-------EHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEA 423 (798)
Q Consensus 356 ~rrF~~i~--v~ep~~~~~~~iL~~~~~~ye-------~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea 423 (798)
T Consensus 374 LSRFDLIf~l~D~~~~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~lrkYI~yar~~~~P-~ls~eA~~~i~~~ 449 (509)
T smart00350 374 LSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKP-KLSEEAAEKLVKA 449 (509)
T ss_pred HHHCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHH
T ss_conf 410238999615898788999999999987415887545568868999999999999862899-7899999999999