HHsearch alignment for GI: 254780163 and conserved domain: smart00382

>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

Probab=98.73  E-value=2.5e-08  Score=79.04  Aligned_cols=116  Identities=23%  Similarity=0.222  Sum_probs=78.1

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHHCCC---CEEEEEHHHHHCCCCCCH----HCCCCCHHCCCCCCCCCCHHHHHCCCEEE
Q ss_conf             06886143200388999998730477---337720688612465301----10478000256444310035551585177
Q gi|254780163|r  508 GCYVFSGPTGVGKTEISKQLAFALGV---QLLRFDMSEYMERHAVSR----LIGAPPGYVGFGQGGILADSVDQNPYSVV  580 (798)
Q Consensus       508 g~flf~GptGvGKTelak~la~~~~~---~lir~dmsey~e~~~vs~----LiGappGYvG~~egg~Lte~vr~~P~sVv  580 (798)
T Consensus         3 ~~ill~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi   82 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL   82 (148)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             78999999970299999999987266899689987599898889876530001122105199999999999984499899


Q ss_pred             EECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCC
Q ss_conf             7404455028999999998777502177997761254299994242
Q gi|254780163|r  581 LLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNA  626 (798)
Q Consensus       581 l~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~  626 (798)
T Consensus        83 iiDei~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~vi~~~n~  125 (148)
T smart00382       83 ILDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTND  125 (148)
T ss_pred             EEECCHHHCCCCCHHHHHHHHH---HHHHCCCCCCCCEEEEEEECC
T ss_conf             9827502147620799999999---998517657899899995699