RPSBLAST alignment for GI: 254780163 and conserved domain: TIGR03346
>gnl|CDD|163223 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. Length = 852
Score = 360 bits (926), Expect = e-100
Identities = 170/427 (39%), Positives = 245/427 (57%), Gaps = 36/427 (8%)
Query: 4 FSENLEKVLHQALVLANERNHEYATLEHLLLALIDDSDAAIVML--SCNVDLKVLKNNLL 61
F+E ++ L A LA R+H+ EHLL AL+D L V++ L+ L
Sbjct: 1 FTEKFQEALQAAQSLALGRDHQQIEPEHLLKALLDQEGGLARRLLQKAGVNVGALRQALE 60
Query: 62 NYIDNDSSNKLKNGFRVECKPTSSFQRVVQRAVLHVQSTGRGIVTGANILVALFSEPDSH 121
++ K+ + + R++ A Q G ++ ++L+AL + +
Sbjct: 61 KELE--KLPKVSGPGG-QVYLSPELNRLLNLAEKLAQKRGDEFISSEHLLLALLDDKGTL 117
Query: 122 ATYFLQEQEMTLYDAVNFISHGISKRKEFANFQSKLN-VDGSSAGSDGEGFVNDYQAKTD 180
+ G + ++ +N V G V A+
Sbjct: 118 GKLLKEA--------------GATA----DALEAAINAVRGGQK-------VTSANAE-- 150
Query: 181 LNLFPALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTA 240
+ + AL Y DLTE+ ++GK+D ++GR EEI RTIQ+L RR+KNNP+ +G+PGVGKTA
Sbjct: 151 -DQYEALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTA 209
Query: 241 IAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIE-SYANAI 299
I EG A++IV+G VP+ L R+ +LDMG LIAG +YRG+FEER+K ++ E+ S I
Sbjct: 210 IVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQII 269
Query: 300 LYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRF 359
L+IDE+HTLVGAG A G ++DA N+LKPAL+ G + CIG+TT EYR++ EKD AL RRF
Sbjct: 270 LFIDELHTLVGAGKAEG-AMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRF 328
Query: 360 QKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDV 419
Q + V EP++ED I I++G+K +E HH +R + AI AA LS R+ T R LPDKAID+
Sbjct: 329 QPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDL 388
Query: 420 IDEAGAS 426
IDEA A
Sbjct: 389 IDEAAAR 395