Query gi|254780164|ref|YP_003064577.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 138
No_of_seqs 145 out of 946
Neff 4.6
Searched_HMMs 33803
Date Mon May 23 00:13:36 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780164.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3dnj_A ATP-dependent CLP prot 100.0 2.4E-33 7.2E-38 210.9 11.2 85 54-138 1-85 (85)
2 >2w9r_A YLJA, ATP-dependent CL 100.0 2.4E-30 7E-35 193.8 11.3 83 56-138 1-83 (85)
3 >3h4o_A Nitroreductase family 35.7 30 0.00088 15.9 2.7 29 89-117 118-146 (191)
4 >1f5v_A Oxygen-insensitive NAD 35.6 25 0.00075 16.3 2.3 34 88-121 110-143 (172)
5 >1bkj_A NADPH-flavin oxidoredu 34.6 27 0.00079 16.2 2.3 34 88-121 110-143 (240)
6 >3ge5_A Putative NAD(P)H:FMN o 34.5 34 0.001 15.6 3.0 29 89-117 127-155 (198)
7 >2fre_A NAD(P)H-flavin oxidore 34.0 31 0.00092 15.8 2.5 30 88-117 95-124 (146)
8 >2vpq_A Acetyl-COA carboxylase 31.1 39 0.0011 15.3 4.0 53 85-137 6-68 (70)
9 >3gfa_A Putative nitroreductas 27.9 41 0.0012 15.1 2.3 30 87-116 130-159 (198)
10 >3gbh_A NAD(P)H-flavin oxidore 24.3 31 0.0009 15.8 1.1 28 90-117 147-174 (213)
11 >3cov_A Pantothenate synthetas 23.1 54 0.0016 14.4 3.2 19 116-134 165-183 (195)
12 >1iho_A Pantoate--beta-alanine 22.2 57 0.0017 14.3 2.9 48 88-135 8-55 (185)
13 >1ulz_A Pyruvate carboxylase N 22.2 57 0.0017 14.3 4.5 53 85-137 6-68 (71)
14 >2w70_A Biotin carboxylase; li 21.8 58 0.0017 14.2 3.3 52 86-137 7-68 (70)
15 >2r01_A Nitroreductase family 21.4 59 0.0017 14.2 2.9 29 89-117 117-145 (165)
16 >2i7h_A Nitroreductase-like fa 20.9 60 0.0018 14.1 2.3 26 87-112 117-142 (189)
17 >3g14_A Nitroreductase family 20.9 33 0.00097 15.7 0.7 28 89-116 107-134 (193)
18 >1zch_A Hypothetical oxidoredu 20.5 53 0.0016 14.4 1.7 34 88-121 116-149 (177)
No 1
>>3dnj_A ATP-dependent CLP protease adapter protein CLPS; adaptor, protein-peptide complex, peptide binding protein; 1.15A {Caulobacter vibrioides} PDB: 3g19_A 3gq0_A 3gq1_A 3gw1_A 3g1b_A (A:)
Probab=100.00 E-value=2.4e-33 Score=210.85 Aligned_cols=85 Identities=59% Similarity=1.044 Sum_probs=83.7
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 26899748999718988489999999998299989999999998237968999638999999999999999975998179
Q gi|254780164|r 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQC 133 (138)
Q Consensus 54 ~k~P~~YkVIL~NDd~ttmefVi~vL~~vf~~~~e~A~~iml~vH~~G~avvgv~~~E~AE~k~~qv~~~Ar~~~~PL~~ 133 (138)
+|+||+|+|||||||+|||||||.+|+++|+++.++|.++|++||++|+|+||+|++|+||+|+.+++++||.+||||+|
T Consensus 1 tk~~~~y~ViL~NDd~~t~e~Vi~vL~~v~~~s~~~A~~~~~~vH~~G~avv~~~~~e~Ae~~~~~~~~~ar~~~~pL~~ 80 (85)
T 3dnj_A 1 TQKPSLYRVLILNDDYTPMEFVVYVLERFFNKSREDATRIMLHVHQNGVGVCGVYTYEVAETKVAQVIDSARRHQHPLQC 80 (85)
T ss_dssp -----CEEEEEECCSSSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSEEEEEEECHHHHHHHHHHHHHHHHHTTCCCCE
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 99998438999879999889999999999593999999999996569958999987999999999999999974999769
Q ss_pred EEECC
Q ss_conf 86119
Q gi|254780164|r 134 IMEQK 138 (138)
Q Consensus 134 ~iE~e 138 (138)
+||+|
T Consensus 81 ~ie~~ 85 (85)
T 3dnj_A 81 TMEKD 85 (85)
T ss_dssp EEEEC
T ss_pred EECCC
T ss_conf 97039
No 2
>>2w9r_A YLJA, ATP-dependent CLP protease adapter protein CLPS; chaperone, adaptor protein, DNA condensation, iron, CLPS, CLPA, cytoplasm, N-END RULE; HET: DNA; 1.70A {Escherichia coli} PDB: 2wa9_A 1mbx_C* 1mbv_B 1mbu_C* 1r6o_C* 1r6q_C* 2wa8_A 1mg9_A* 1lzw_A* (A:24-108)
Probab=99.97 E-value=2.4e-30 Score=193.77 Aligned_cols=83 Identities=53% Similarity=0.895 Sum_probs=81.4
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 89974899971898848999999999829998999999999823796899963899999999999999997599817986
Q gi|254780164|r 56 VPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIM 135 (138)
Q Consensus 56 ~P~~YkVIL~NDd~ttmefVi~vL~~vf~~~~e~A~~iml~vH~~G~avvgv~~~E~AE~k~~qv~~~Ar~~~~PL~~~i 135 (138)
.|++|+|||||||+|||||||.+|+++|+++.++|.++|++||++|+|+||+|++|+||+++.+++++||.+|+||+|++
T Consensus 1 pp~~y~ViL~NDd~~t~e~Vi~~L~~v~~~~~~~A~~~~~~vh~~G~avv~~~~~e~Ae~~~~~l~~~~~~~~~pL~~~i 80 (85)
T 2w9r_A 1 PPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTL 80 (85)
T ss_dssp CCCEEEEEEECCSSSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSEEEEEEEEHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99844899985899978999999999968899999999999636997899997799999999999999997499838999
Q ss_pred ECC
Q ss_conf 119
Q gi|254780164|r 136 EQK 138 (138)
Q Consensus 136 E~e 138 (138)
|++
T Consensus 81 e~~ 83 (85)
T 2w9r_A 81 EKA 83 (85)
T ss_dssp EEC
T ss_pred EEC
T ss_conf 868
No 3
>>3h4o_A Nitroreductase family protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE FMN; 1.50A {Clostridium difficile 630} (A:)
Probab=35.68 E-value=30 Score=15.91 Aligned_cols=29 Identities=10% Similarity=0.167 Sum_probs=25.1
Q ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf 99999999823796899963899999999
Q gi|254780164|r 89 TAKCIMLKVHHQGIGECGVYAYEIAEMKV 117 (138)
Q Consensus 89 ~A~~iml~vH~~G~avvgv~~~E~AE~k~ 117 (138)
.+..+++.++..|.|.|+++.++..+.+.
T Consensus 118 a~~nl~laa~~~Glgt~~~~~~~~~~~~~ 146 (191)
T 3h4o_A 118 VTDHXXLQATELGLASVWVCYFNPDIIRE 146 (191)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSCHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEECCCCHHHHHH
T ss_conf 99999999999643844340439999999
No 4
>>1f5v_A Oxygen-insensitive NADPH nitroreductase; flavoprotein, oxidoreduction, nitrocompound, oxidoreductase; HET: FMN; 1.70A {Escherichia coli} (A:1-172)
Probab=35.64 E-value=25 Score=16.31 Aligned_cols=34 Identities=12% Similarity=0.155 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 9999999998237968999638999999999999
Q gi|254780164|r 88 ETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVM 121 (138)
Q Consensus 88 e~A~~iml~vH~~G~avvgv~~~E~AE~k~~qv~ 121 (138)
-.+..+|+.++..|.|.|+++.+-....++.++.
T Consensus 110 ~a~~~l~LaA~~~Glgs~~~~~~~~~~~~i~~~l 143 (172)
T 1f5v_A 110 MMAQNALIAAESLGLGGVYIGGLRNNIEAVTKLL 143 (172)
T ss_dssp HHHHHHHHHHHHTTCEEEEEGGGGGGHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH
T ss_conf 9999999999985998897567633689999970
No 5
>>1bkj_A NADPH-flavin oxidoreductase; luminescence, flavoprotein; HET: FMN; 1.80A {Vibrio harveyi} (A:)
Probab=34.63 E-value=27 Score=16.16 Aligned_cols=34 Identities=15% Similarity=0.253 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 9999999998237968999638999999999999
Q gi|254780164|r 88 ETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVM 121 (138)
Q Consensus 88 e~A~~iml~vH~~G~avvgv~~~E~AE~k~~qv~ 121 (138)
-.|..+++.++..|-|.|+++.+.....++.++.
T Consensus 110 ~~~q~~~LaA~~lGlgtc~ig~~~~~~~~v~~~l 143 (240)
T 1bkj_A 110 IMAQNCLLAAESMGLGGVYIGGLRNSAAQVDELL 143 (240)
T ss_dssp HHHHHHHHHHHHTTCEEEEEGGGGGGHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHC
T ss_conf 9999999999995679388536344479999864
No 6
>>3ge5_A Putative NAD(P)H:FMN oxidoreductase; NP_904626.1, structural genomics, joint center for structural genomics, JCSG; HET: FMN UNL; 1.70A {Porphyromonas gingivalis W83} (A:)
Probab=34.50 E-value=34 Score=15.59 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=24.3
Q ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf 99999999823796899963899999999
Q gi|254780164|r 89 TAKCIMLKVHHQGIGECGVYAYEIAEMKV 117 (138)
Q Consensus 89 ~A~~iml~vH~~G~avvgv~~~E~AE~k~ 117 (138)
.+..+++.++..|.|.|+++.++..+.+.
T Consensus 127 a~~n~~Laa~~~Glgs~~~~~~~~~~v~~ 155 (198)
T 3ge5_A 127 AXTYXXLEAHSLGLGCTWVCAFDQALCSE 155 (198)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSCHHHHHH
T ss_pred HHHHHHHHHHCCCCCEEEEEEECHHHHHH
T ss_conf 99999999710599358773002577999
No 7
>>2fre_A NAD(P)H-flavin oxidoreductase; FMN, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; HET: FMN; 1.90A {Agrobacterium tumefaciens str} (A:22-167)
Probab=33.98 E-value=31 Score=15.79 Aligned_cols=30 Identities=10% Similarity=-0.013 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf 999999999823796899963899999999
Q gi|254780164|r 88 ETAKCIMLKVHHQGIGECGVYAYEIAEMKV 117 (138)
Q Consensus 88 e~A~~iml~vH~~G~avvgv~~~E~AE~k~ 117 (138)
-.++.+++.++..|.|.|+++.++..+.+.
T Consensus 95 ~a~~~~~laA~~~Glgt~~~~~~~~~~~~~ 124 (146)
T 2fre_A 95 AAWFSLAXQAHLLGYHAHGXGGIFKDRIVE 124 (146)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCBCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCEEECCCCHHHHHH
T ss_conf 999877999999862817561404578999
No 8
>>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} (A:133-202)
Probab=31.13 E-value=39 Score=15.26 Aligned_cols=53 Identities=21% Similarity=0.011 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHH----------CCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 99899999999982----------379689996389999999999999999759981798611
Q gi|254780164|r 85 KDHETAKCIMLKVH----------HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137 (138)
Q Consensus 85 ~~~e~A~~iml~vH----------~~G~avvgv~~~E~AE~k~~qv~~~Ar~~~~PL~~~iE~ 137 (138)
.|.++|..+.-++- -.|+|+..+...|..+.....+.+.++.....-++.+|+
T Consensus 6 ~s~ee~~~~~~~iG~PvvvKP~~~~~g~Gv~~v~~~~el~~a~~~a~~~~~~~~~~~~vliE~ 68 (70)
T 2vpq_A 6 KDVSEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEK 68 (70)
T ss_dssp SCHHHHHHHHHHHCSSEEEEETTCCTTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 999999999997399589998878999876798414243999999999997557898289987
No 9
>>3gfa_A Putative nitroreductase; YP_001089721.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE FMN GOL; 1.35A {Clostridium difficile 630} (A:)
Probab=27.89 E-value=41 Score=15.14 Aligned_cols=30 Identities=13% Similarity=0.081 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHHHHH
Q ss_conf 899999999982379689996389999999
Q gi|254780164|r 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMK 116 (138)
Q Consensus 87 ~e~A~~iml~vH~~G~avvgv~~~E~AE~k 116 (138)
---+..+++.++..|.|.|+++.++..+.+
T Consensus 130 g~~~~n~~laA~a~Glg~~~~~~~~~~~i~ 159 (198)
T 3gfa_A 130 GAAIQNXSLTAVELGLGSLWICDVYFAYRE 159 (198)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECGGGGGHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHH
T ss_conf 999999999999759867863474323799
No 10
>>3gbh_A NAD(P)H-flavin oxidoreductase; NP_765521.1, putative NAD(P)H:FMN oxidoreductase, structural genomics; HET: MSE FMN PGE; 2.00A {Staphylococcus epidermidis atcc 12228} (A:)
Probab=24.25 E-value=31 Score=15.84 Aligned_cols=28 Identities=11% Similarity=0.191 Sum_probs=24.1
Q ss_pred HHHHHHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf 9999999823796899963899999999
Q gi|254780164|r 90 AKCIMLKVHHQGIGECGVYAYEIAEMKV 117 (138)
Q Consensus 90 A~~iml~vH~~G~avvgv~~~E~AE~k~ 117 (138)
+..+++.++..|.|.|+++.+...+.+.
T Consensus 147 ~~n~~LaA~a~Glgs~~~~~~~~~~v~~ 174 (213)
T 3gbh_A 147 AXQLXLTAKAHGYDTNPIGGFDKENIAD 174 (213)
T ss_dssp HHHHHHHHHHTTCEEEEECCSCTTTHHH
T ss_pred HHHHHHHHHHCCCCEEEECHHHHHHHHH
T ss_conf 9999999998398867662115999999
No 11
>>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzymes, ligase, drug design, ATP-binding, cytoplasm, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} (A:1-195)
Probab=23.12 E-value=54 Score=14.41 Aligned_cols=19 Identities=0% Similarity=0.099 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHCCCCEEEE
Q ss_conf 9999999999759981798
Q gi|254780164|r 116 KVNQVMNYSRQHQYPLQCI 134 (138)
Q Consensus 116 k~~qv~~~Ar~~~~PL~~~ 134 (138)
....+..+++..|+.+.+.
T Consensus 165 ~~~~L~~~~~~~~~~v~vv 183 (195)
T 3cov_A 165 QLVLIRQLVADFNLDVAVV 183 (195)
T ss_dssp HHHHHHHHHHHTTCCCEEE
T ss_pred HHHHHHHHHHHHCCCCEEE
T ss_conf 9999999998746664178
No 12
>>1iho_A Pantoate--beta-alanine ligase; rossman fold, dimer, APO, high, KSMKS, flexible domains, multidomain; 1.70A {Escherichia coli} (A:1-185)
Probab=22.19 E-value=57 Score=14.30 Aligned_cols=48 Identities=4% Similarity=-0.055 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 999999999823796899963899999999999999997599817986
Q gi|254780164|r 88 ETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIM 135 (138)
Q Consensus 88 e~A~~iml~vH~~G~avvgv~~~E~AE~k~~qv~~~Ar~~~~PL~~~i 135 (138)
++..++--..+.+|+.|+-++.||---.=...+...|++.+-++-+++
T Consensus 8 ~~~~~~~~~~~~~~~~vv~~G~FDglH~GH~~ll~~Ak~~g~~~vv~~ 55 (185)
T 1iho_A 8 PLLRQQIRRLRMEGKRVALVPTMGNLHDGHMKLVDEAKARADVVVVSI 55 (185)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCCCHHHHHHHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 999999999997499099975874064899999999998699099999
No 13
>>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase, ligase; 2.20A {Aquifex aeolicus VF5} (A:133-203)
Probab=22.16 E-value=57 Score=14.29 Aligned_cols=53 Identities=17% Similarity=0.033 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHH----------HCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 9989999999998----------2379689996389999999999999999759981798611
Q gi|254780164|r 85 KDHETAKCIMLKV----------HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137 (138)
Q Consensus 85 ~~~e~A~~iml~v----------H~~G~avvgv~~~E~AE~k~~qv~~~Ar~~~~PL~~~iE~ 137 (138)
.+.++|.+...++ --.|+|+..+...|.++....++...++.....-++.+|+
T Consensus 6 ~~~eea~~~a~~iG~PvVvKP~~~~gg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vliE~ 68 (71)
T 1ulz_A 6 KSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEK 68 (71)
T ss_dssp CCHHHHHHHHHHHCSSEEEEECSSSSCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEE
T ss_pred CCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 999999999985599699998668998710797798999999999999999856998489876
No 14
>>2w70_A Biotin carboxylase; ligase, inhibitor, ATP-binding, fatty acid biosynthesis, nucleotide-binding, lipid synthesis, ATP-grAsp domain; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 1dv2_A* 2gps_A 2gpw_A 3g8c_A* ... (A:135-204)
Probab=21.76 E-value=58 Score=14.25 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHH----------CCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 9899999999982----------379689996389999999999999999759981798611
Q gi|254780164|r 86 DHETAKCIMLKVH----------HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137 (138)
Q Consensus 86 ~~e~A~~iml~vH----------~~G~avvgv~~~E~AE~k~~qv~~~Ar~~~~PL~~~iE~ 137 (138)
+.++|....-++- -.|+|+-.+...+..+....++...++.....-.+.+|+
T Consensus 7 s~~e~~~~~~~iGyPvvvKp~~~~gg~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vliE~ 68 (70)
T 2w70_A 7 DMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEK 68 (70)
T ss_dssp CHHHHHHHHHHHCSSEEEEETTCCTTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CHHHHHHHHHHCCCCEEECCCCCHHHHHHHEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 29999999875499723112200233330100140568999999999999736998589987
No 15
>>2r01_A Nitroreductase family protein; NP_661249.1, putative FMN-dependent nitroreductase, structural genomics; HET: MSE FMN; 1.15A {Chlorobium tepidum tls} (A:1-165)
Probab=21.40 E-value=59 Score=14.20 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=23.9
Q ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf 99999999823796899963899999999
Q gi|254780164|r 89 TAKCIMLKVHHQGIGECGVYAYEIAEMKV 117 (138)
Q Consensus 89 ~A~~iml~vH~~G~avvgv~~~E~AE~k~ 117 (138)
-+..+++.++..|-|.|+++.+..++.+.
T Consensus 117 a~~nl~LaA~~~Glg~~~~~~~~~~~~~~ 145 (165)
T 2r01_A 117 AAQTIXLGAAEKELGGCIVAAIDRERLXA 145 (165)
T ss_dssp HHHHHHHHHHHTTCEEEEECCBCHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEECCCCHHHHHH
T ss_conf 99999999998799889766648999999
No 16
>>2i7h_A Nitroreductase-like family protein; alpha-beta, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE FMN; 2.30A {Bacillus cereus} (A:)
Probab=20.91 E-value=60 Score=14.14 Aligned_cols=26 Identities=12% Similarity=-0.054 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf 89999999998237968999638999
Q gi|254780164|r 87 HETAKCIMLKVHHQGIGECGVYAYEI 112 (138)
Q Consensus 87 ~e~A~~iml~vH~~G~avvgv~~~E~ 112 (138)
--.+..+|+.++..|.|.|+++....
T Consensus 117 g~a~~~l~laa~~~Glgs~~~~~~~~ 142 (189)
T 2i7h_A 117 CAFXQNFQLLAWERGLGCVWKSGGLN 142 (189)
T ss_dssp HHHHHHHHHHHHHTTEEEEEECSGGG
T ss_pred HHHHHHHHHHHHHCCCCEECCCCCCC
T ss_conf 88999999999876967253547643
No 17
>>3g14_A Nitroreductase family protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.75A {Clostridium novyi NT} (A:)
Probab=20.86 E-value=33 Score=15.65 Aligned_cols=28 Identities=25% Similarity=0.524 Sum_probs=24.0
Q ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHH
Q ss_conf 9999999982379689996389999999
Q gi|254780164|r 89 TAKCIMLKVHHQGIGECGVYAYEIAEMK 116 (138)
Q Consensus 89 ~A~~iml~vH~~G~avvgv~~~E~AE~k 116 (138)
.+..+++.++..|.|.|+++.+...+.+
T Consensus 107 ~~~~l~LaA~~~Glgs~~~~~~~~~~v~ 134 (193)
T 3g14_A 107 AXEHIVLGATDEGYGTCWIAAFNENKIK 134 (193)
T ss_dssp HHHHHHHHHHHTTCBBCCBCCBCHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEECCCCHHHHH
T ss_conf 9999999999879988756674999999
No 18
>>1zch_A Hypothetical oxidoreductase YCND; nitroreductase, NADH-oxidase; HET: FMN; 1.85A {Bacillus subtilis} (A:1-177)
Probab=20.50 E-value=53 Score=14.45 Aligned_cols=34 Identities=9% Similarity=0.062 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 9999999998237968999638999999999999
Q gi|254780164|r 88 ETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVM 121 (138)
Q Consensus 88 e~A~~iml~vH~~G~avvgv~~~E~AE~k~~qv~ 121 (138)
-.+..+++.++..|.|.|+++.+-....++.++.
T Consensus 116 ~~~~nl~LaA~~~Glgs~~~~~~~~~~~~v~~~l 149 (177)
T 1zch_A 116 IALGTATAAAESLGLGTVPIGAVRGNPQELIELL 149 (177)
T ss_dssp HHHHHHHHHHHHTTCEEEEEGGGGSSHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHH
T ss_conf 9999999999997418174047545899999983
Done!