Query gi|254780164|ref|YP_003064577.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 138
No_of_seqs 145 out of 946
Neff 4.6
Searched_HMMs 13730
Date Mon May 23 12:33:53 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780164.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r6oc1 d.45.1.2 (C:20-106) Ad 100.0 4.7E-35 3.4E-39 218.4 11.2 85 53-137 2-86 (87)
2 d1vkwa_ d.90.1.2 (A:) Putative 37.5 12 0.00085 16.0 2.8 48 52-110 56-103 (217)
3 d1bkja_ d.90.1.1 (A:) Flavin r 36.4 9.8 0.00071 16.4 2.3 33 89-121 110-142 (239)
4 d1f5va_ d.90.1.1 (A:) Oxygen-i 29.1 15 0.0011 15.3 2.3 33 89-121 111-143 (240)
5 d1qnaa1 d.129.1.1 (A:17-115) T 22.5 23 0.0017 14.3 4.1 41 93-133 53-94 (99)
6 d1zcha1 d.90.1.1 (A:1-249) Hyp 20.7 21 0.0016 14.5 1.7 22 89-110 117-138 (249)
7 d2frea1 d.90.1.1 (A:1-200) NAD 19.6 26 0.0019 14.0 2.5 26 88-113 116-141 (200)
8 d1noxa_ d.90.1.1 (A:) NADH oxi 18.3 28 0.0021 13.8 2.7 25 89-113 134-158 (200)
9 d1c07a_ a.39.1.6 (A:) Eps15 {H 17.4 29 0.0021 13.7 5.5 62 66-132 23-84 (95)
10 d2csga1 b.82.2.12 (A:3-419) Hy 12.3 41 0.003 12.9 2.3 38 92-129 75-113 (417)
No 1
>d1r6oc1 d.45.1.2 (C:20-106) Adaptor protein ClpS (YljA) {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=4.7e-35 Score=218.44 Aligned_cols=85 Identities=52% Similarity=0.891 Sum_probs=83.7
Q ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 02689974899971898848999999999829998999999999823796899963899999999999999997599817
Q gi|254780164|r 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQ 132 (138)
Q Consensus 53 k~k~P~~YkVIL~NDd~ttmefVi~vL~~vf~~~~e~A~~iml~vH~~G~avvgv~~~E~AE~k~~qv~~~Ar~~~~PL~ 132 (138)
++|+||+|+|||||||+|||||||.+|+++|+++.++|.++|++||++|+|+||+|++|+||+|+.|++++||++||||+
T Consensus 2 ~lk~P~~y~ViL~NDd~~t~e~Vi~~L~~v~~~~~~~A~~~~~~vH~~G~avv~~~~~E~AE~k~~~~~~~ar~~g~PL~ 81 (87)
T d1r6oc1 2 ALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLL 81 (87)
T ss_dssp CCCCCCEEEEEEECCSSSCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSEEEEEEEEHHHHHHHHHHHHHHHHHTTCCCE
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 87889843899987999978999999999979599999999999555893899996699999999999999997399936
Q ss_pred EEEEC
Q ss_conf 98611
Q gi|254780164|r 133 CIMEQ 137 (138)
Q Consensus 133 ~~iE~ 137 (138)
|++|+
T Consensus 82 ~t~E~ 86 (87)
T d1r6oc1 82 CTLEK 86 (87)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99876
No 2
>d1vkwa_ d.90.1.2 (A:) Putative nitroreductase TM1586 {Thermotoga maritima [TaxId: 2336]}
Probab=37.46 E-value=12 Score=16.00 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=30.3
Q ss_pred HCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 00268997489997189884899999999982999899999999982379689996389
Q gi|254780164|r 52 SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110 (138)
Q Consensus 52 ~k~k~P~~YkVIL~NDd~ttmefVi~vL~~vf~~~~e~A~~iml~vH~~G~avvgv~~~ 110 (138)
......|.|-+++-+.+.+-++ ++ ---+.+++|.++..|.|.||++..
T Consensus 56 ~~~~~ap~~Ivv~~~~~~~~~~-------d~----G~a~e~l~L~A~~lGLGTCWig~~ 103 (217)
T d1vkwa_ 56 INLSSFPSYIYAKAEKHFDELV-------EY----GFQGEQIVLFLTAQGFGTCWMARS 103 (217)
T ss_dssp EECSSSSEEEECCCCSSHHHHH-------HH----HHHHHHHHHHHHHTTCEEEEESCC
T ss_pred EEECCCCEEEEEEECCCCCHHH-------HH----HHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 2461898899999749813888-------89----999999999999869977987136
No 3
>d1bkja_ d.90.1.1 (A:) Flavin reductase P (NADPH:FMN oxidoreductase) {Vibrio harveyi [TaxId: 669]}
Probab=36.41 E-value=9.8 Score=16.42 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=24.8
Q ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 999999998237968999638999999999999
Q gi|254780164|r 89 TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVM 121 (138)
Q Consensus 89 ~A~~iml~vH~~G~avvgv~~~E~AE~k~~qv~ 121 (138)
.|..+|+.++..|.|.|+++.+.....++.++.
T Consensus 110 a~qn~~LaA~slGLGs~~ig~~~~~~~~v~~~L 142 (239)
T d1bkja_ 110 MAQNCLLAAESMGLGGVYIGGLRNSAAQVDELL 142 (239)
T ss_dssp HHHHHHHHHHHTTCEEEEEGGGGGGHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHC
T ss_conf 999999999980899486346322079999972
No 4
>d1f5va_ d.90.1.1 (A:) Oxygen-insensitive NAD(P)H nitroreductase {Escherichia coli, major form, NfsA [TaxId: 562]}
Probab=29.15 E-value=15 Score=15.32 Aligned_cols=33 Identities=12% Similarity=0.180 Sum_probs=24.0
Q ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 999999998237968999638999999999999
Q gi|254780164|r 89 TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVM 121 (138)
Q Consensus 89 ~A~~iml~vH~~G~avvgv~~~E~AE~k~~qv~ 121 (138)
.+..+|+.++..|.|.|+++.+......+.++.
T Consensus 111 a~qn~~LaA~slGLGs~~ig~~~~~~~~v~~~L 143 (240)
T d1f5va_ 111 MAQNALIAAESLGLGGVYIGGLRNNIEAVTKLL 143 (240)
T ss_dssp HHHHHHHHHHHTTCEEEEEGGGGGGHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH
T ss_conf 999999999981999276346312489999984
No 5
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=22.50 E-value=23 Score=14.33 Aligned_cols=41 Identities=12% Similarity=0.265 Sum_probs=34.8
Q ss_pred HHHHHHCCCCEEE-EECCHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 9999823796899-9638999999999999999975998179
Q gi|254780164|r 93 IMLKVHHQGIGEC-GVYAYEIAEMKVNQVMNYSRQHQYPLQC 133 (138)
Q Consensus 93 iml~vH~~G~avv-gv~~~E~AE~k~~qv~~~Ar~~~~PL~~ 133 (138)
++..+...|+-+| |..+.|.|+.-...+...-++.|++...
T Consensus 53 ~t~lIF~SGKivitGaks~~~~~~a~~~i~~~l~k~g~~v~~ 94 (99)
T d1qnaa1 53 TTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKF 94 (99)
T ss_dssp EEEEEETTSEEEEEEESSHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred EEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 999997697799964699999999999999999984999751
No 6
>d1zcha1 d.90.1.1 (A:1-249) Hypothetical oxidoreductase YcnD {Bacillus subtilis [TaxId: 1423]}
Probab=20.68 E-value=21 Score=14.48 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=19.4
Q ss_pred HHHHHHHHHHCCCCEEEEECCH
Q ss_conf 9999999982379689996389
Q gi|254780164|r 89 TAKCIMLKVHHQGIGECGVYAY 110 (138)
Q Consensus 89 ~A~~iml~vH~~G~avvgv~~~ 110 (138)
.+..+++.++..|.|.|+++..
T Consensus 117 a~qn~~LaA~alGLGs~~ig~~ 138 (249)
T d1zcha1 117 ALGTATAAAESLGLGTVPIGAV 138 (249)
T ss_dssp HHHHHHHHHHHTTCEEEEEGGG
T ss_pred HHHHHHHHHHHCCCCEEEECCC
T ss_conf 9999999999869864640575
No 7
>d2frea1 d.90.1.1 (A:1-200) NAD(P)H-flavin oxidoreductase Atu0013 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=19.60 E-value=26 Score=13.98 Aligned_cols=26 Identities=12% Similarity=0.050 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHCCCCEEEEECCHHHH
Q ss_conf 99999999982379689996389999
Q gi|254780164|r 88 ETAKCIMLKVHHQGIGECGVYAYEIA 113 (138)
Q Consensus 88 e~A~~iml~vH~~G~avvgv~~~E~A 113 (138)
-.+..+|+.++..|.|.|+++.+...
T Consensus 116 ~a~~n~~Laa~~lGlgt~~~~~~~~~ 141 (200)
T d2frea1 116 AAWFSLAMQAHLLGYHAHGMGGIFKD 141 (200)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCBCHH
T ss_pred HHHHHHHHHHHHHHHCCEEECCCCHH
T ss_conf 88751799999842161867335337
No 8
>d1noxa_ d.90.1.1 (A:) NADH oxidase {Thermus thermophilus, HB8 [TaxId: 274]}
Probab=18.25 E-value=28 Score=13.80 Aligned_cols=25 Identities=12% Similarity=0.335 Sum_probs=21.4
Q ss_pred HHHHHHHHHHCCCCEEEEECCHHHH
Q ss_conf 9999999982379689996389999
Q gi|254780164|r 89 TAKCIMLKVHHQGIGECGVYAYEIA 113 (138)
Q Consensus 89 ~A~~iml~vH~~G~avvgv~~~E~A 113 (138)
.+..+|+.++..|.|.|+++.++..
T Consensus 134 a~~n~~Laa~s~Glgs~~~~~~~~~ 158 (200)
T d1noxa_ 134 LLGYLLLLLEAYGLGSVPMLGFDPE 158 (200)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSCHH
T ss_pred HHHHHHHHHHHCCCCEECCCCCCHH
T ss_conf 9999999999849873046555979
No 9
>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.45 E-value=29 Score=13.69 Aligned_cols=62 Identities=8% Similarity=-0.026 Sum_probs=45.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 1898848999999999829998999999999823796899963899999999999999997599817
Q gi|254780164|r 66 NDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQ 132 (138)
Q Consensus 66 NDd~ttmefVi~vL~~vf~~~~e~A~~iml~vH~~G~avvgv~~~E~AE~k~~qv~~~Ar~~~~PL~ 132 (138)
+|.+-+.+-+...|.+ .+.+.+.-.+|+..++.+|.|..-.-.|-+|= .+...+...|.+|-
T Consensus 23 ~~G~is~~e~~~~l~~-~~l~~~~l~~i~~~~D~d~dG~l~~~EF~~am----~Li~~~~~~g~~lP 84 (95)
T d1c07a_ 23 MDGFVSGLEVREIFLK-TGLPSTLLAHIWSLCDTKDCGKLSKDQFALAF----HLISQKLIKGIDPP 84 (95)
T ss_dssp CSSEECHHHHHHHHHT-TTCCHHHHHHHHHHHCTTCSSSEETTTHHHHH----HHHHHHHTSCCCCC
T ss_pred CCCCCCHHHHHHHHHH-CCCCHHHHHHHHHHHCCCCCCEECHHHHHHHH----HHHHHHHHCCCCCC
T ss_conf 9998708777778873-27999999999998078999817199999999----99999997799996
No 10
>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella typhimurium [TaxId: 90371]}
Probab=12.31 E-value=41 Score=12.87 Aligned_cols=38 Identities=16% Similarity=0.279 Sum_probs=29.7
Q ss_pred HHHHHHHCCCCEEE-EECCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999823796899-963899999999999999997599
Q gi|254780164|r 92 CIMLKVHHQGIGEC-GVYAYEIAEMKVNQVMNYSRQHQY 129 (138)
Q Consensus 92 ~iml~vH~~G~avv-gv~~~E~AE~k~~qv~~~Ar~~~~ 129 (138)
.+--.+++.|.+|+ ++.+.|.|+....++.+|-..+.+
T Consensus 75 ~~~~~IkrrG~vVIRnV~p~e~a~~w~~~l~~Yle~n~~ 113 (417)
T d2csga1 75 ATRAEVKRRGCAVIKGHFPREQALAWDQSMLDYLDKNHF 113 (417)
T ss_dssp HHHHHHHHHSEEEETTSSCHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999861889988878999999999999999982864
Done!