BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780164|ref|YP_003064577.1| ATP-dependent Clp protease
adaptor protein ClpS [Candidatus Liberibacter asiaticus str. psy62]
         (138 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done


Results from round 1


>gi|254780164|ref|YP_003064577.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254039841|gb|ACT56637.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 138

 Score =  290 bits (741), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 138/138 (100%), Positives = 138/138 (100%)

Query: 1   MYLFDDGSMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLY 60
           MYLFDDGSMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLY
Sbjct: 1   MYLFDDGSMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLY 60

Query: 61  RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQV 120
           RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQV
Sbjct: 61  RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQV 120

Query: 121 MNYSRQHQYPLQCIMEQK 138
           MNYSRQHQYPLQCIMEQK
Sbjct: 121 MNYSRQHQYPLQCIMEQK 138


>gi|315122668|ref|YP_004063157.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313496070|gb|ADR52669.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 120

 Score =  197 bits (500), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 88/120 (73%), Positives = 107/120 (89%)

Query: 19  LALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHV 78
           +  +SF+FMA + MN+KG+A  D+C++++   SSKVR P+LYRVLLVND+YTPMEFVIHV
Sbjct: 1   MVAISFVFMAKNHMNEKGVARTDSCINTKEEISSKVRAPRLYRVLLVNDDYTPMEFVIHV 60

Query: 79  LQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           LQ FF+KDHE++K IMLK+HHQGIGECGVYAYEIAEMKVNQVMNYSRQ+Q+PLQCIME K
Sbjct: 61  LQKFFHKDHESSKSIMLKIHHQGIGECGVYAYEIAEMKVNQVMNYSRQNQHPLQCIMEHK 120


>gi|298291485|ref|YP_003693424.1| ATP-dependent Clp protease adaptor protein ClpS [Starkeya novella
           DSM 506]
 gi|296927996|gb|ADH88805.1| ATP-dependent Clp protease adaptor protein ClpS [Starkeya novella
           DSM 506]
          Length = 123

 Score =  137 bits (346), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 64/114 (56%), Positives = 84/114 (73%), Gaps = 6/114 (5%)

Query: 27  MADSRMNKKGIAEFDNCLDSEV--RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFY 84
           MAD    ++G    DN   + V  R   +V+ P LYRVLL+ND+YTPMEFV+HVL++FF 
Sbjct: 14  MADEERRRRG----DNAPGTAVITRTKPQVKRPSLYRVLLLNDDYTPMEFVVHVLEHFFT 69

Query: 85  KDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           K+ E A  IML VH  G+GECGVY YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 70  KNREEATQIMLHVHQHGVGECGVYTYEVAETKVTQVMDFARKHQHPLQCVMEKK 123


>gi|209884899|ref|YP_002288756.1| ATP-dependent Clp protease adaptor protein ClpS [Oligotropha
           carboxidovorans OM5]
 gi|209873095|gb|ACI92891.1| ATP-dependent Clp protease adaptor protein ClpS [Oligotropha
           carboxidovorans OM5]
          Length = 179

 Score =  137 bits (346), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 58/91 (63%), Positives = 73/91 (80%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R   + + P LYRVL++ND+YTPMEFV+HVL+ FF KD E A  IML VHH GIGECGV
Sbjct: 89  TRTKPRAKRPSLYRVLILNDDYTPMEFVVHVLEKFFQKDVEAATKIMLHVHHHGIGECGV 148

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 149 FTYEIAETKVTQVMDFARKHQHPLQCVMEKK 179


>gi|110633725|ref|YP_673933.1| ATP-dependent Clp protease adaptor protein ClpS [Mesorhizobium sp.
           BNC1]
 gi|110284709|gb|ABG62768.1| ATP-dependent Clp protease adaptor protein ClpS [Chelativorans sp.
           BNC1]
          Length = 133

 Score =  137 bits (344), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 75/91 (82%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R  +K + P LYRVLL+ND+YTPMEFV+HVL+ FF KD E A  IML VH+ G+GECG+
Sbjct: 43  TRTRTKTKKPSLYRVLLLNDDYTPMEFVVHVLERFFQKDREAATMIMLHVHNHGVGECGI 102

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           Y +E+AE KV+QVM+++RQHQ+PLQC+ME+K
Sbjct: 103 YTFEVAETKVSQVMDFARQHQHPLQCVMEKK 133


>gi|241204496|ref|YP_002975592.1| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240858386|gb|ACS56053.1| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 118

 Score =  136 bits (342), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/110 (56%), Positives = 81/110 (73%), Gaps = 2/110 (1%)

Query: 31  RMNKKGIAEFDNCLDSEV--RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
           RM        DN   + V  R   K + P LYRVLL+ND+YTPMEFVIH+L+ FF KD E
Sbjct: 9   RMQNDSERNGDNANRTSVITRTKPKTKKPNLYRVLLLNDDYTPMEFVIHILERFFQKDRE 68

Query: 89  TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           +A  IML VH+ G+GECG++ YE+AE KV+QVM+++RQHQ+PLQC+ME+K
Sbjct: 69  SATRIMLHVHNHGVGECGIFTYEVAETKVSQVMDFARQHQHPLQCVMEKK 118


>gi|150396335|ref|YP_001326802.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
           medicae WSM419]
 gi|150027850|gb|ABR59967.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
           medicae WSM419]
          Length = 117

 Score =  135 bits (341), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 58/91 (63%), Positives = 73/91 (80%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R   K + P LYRVLL+ND+YTPMEFVIH+L+ FF KD E A  IML VH+ G+GECGV
Sbjct: 27  TRTKPKTKKPSLYRVLLLNDDYTPMEFVIHILERFFQKDREEATTIMLHVHNHGVGECGV 86

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YE+AE KV QVM+++RQHQ+PLQC+ME+K
Sbjct: 87  FTYEVAETKVTQVMDFARQHQHPLQCVMEKK 117


>gi|190891596|ref|YP_001978138.1| ATP-dependent Clp protease adaptor protein [Rhizobium etli CIAT
           652]
 gi|190696875|gb|ACE90960.1| ATP-dependent Clp protease adaptor protein [Rhizobium etli CIAT
           652]
          Length = 117

 Score =  135 bits (340), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 80/111 (72%), Gaps = 3/111 (2%)

Query: 31  RMNKKGIAEFDNCLDSE---VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDH 87
           RM   G    DN         R   K + P LYRVLL+ND+YTPMEFVIH+L+ FF KD 
Sbjct: 7   RMQNNGERNGDNGNRGTSVITRTKPKTKKPNLYRVLLLNDDYTPMEFVIHILERFFQKDR 66

Query: 88  ETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           E+A  IML VH+ G+GECG++ YE+AE KV+QVM+++RQHQ+PLQC+ME+K
Sbjct: 67  ESATRIMLHVHNHGVGECGIFTYEVAETKVSQVMDFARQHQHPLQCVMEKK 117


>gi|86357527|ref|YP_469419.1| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium etli CFN
           42]
 gi|218460323|ref|ZP_03500414.1| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium etli Kim
           5]
 gi|86281629|gb|ABC90692.1| ATP-dependent Clp protease adaptor protein [Rhizobium etli CFN 42]
          Length = 117

 Score =  135 bits (340), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 75/91 (82%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R   K + P LYRVLL+ND+YTPMEFVIH+L+ FF KD E+A  IML VH+ G+GECG+
Sbjct: 27  TRTKPKTKKPNLYRVLLLNDDYTPMEFVIHILERFFQKDRESATRIMLHVHNHGVGECGI 86

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YE+AE KV+QVM+++RQHQ+PLQC+ME+K
Sbjct: 87  FTYEVAETKVSQVMDFARQHQHPLQCVMEKK 117


>gi|116251968|ref|YP_767806.1| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115256616|emb|CAK07704.1| putative ATP-dependent CLP protease adaptor protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 109

 Score =  135 bits (340), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 75/91 (82%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R   K + P LYRVLL+ND+YTPMEFVIH+L+ FF KD E+A  IML VH+ G+GECG+
Sbjct: 19  TRTKPKTKKPNLYRVLLLNDDYTPMEFVIHILERFFQKDRESATRIMLHVHNHGVGECGI 78

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YE+AE KV+QVM+++RQHQ+PLQC+ME+K
Sbjct: 79  FTYEVAETKVSQVMDFARQHQHPLQCVMEKK 109


>gi|209549170|ref|YP_002281087.1| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209534926|gb|ACI54861.1| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 116

 Score =  135 bits (340), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 75/91 (82%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R   K + P LYRVLL+ND+YTPMEFVIH+L+ FF KD E+A  IML VH+ G+GECG+
Sbjct: 26  TRTKPKTKKPNLYRVLLLNDDYTPMEFVIHILERFFQKDRESATRIMLHVHNHGVGECGI 85

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YE+AE KV+QVM+++RQHQ+PLQC+ME+K
Sbjct: 86  FTYEVAETKVSQVMDFARQHQHPLQCVMEKK 116


>gi|222085850|ref|YP_002544381.1| ATP-dependent Clp protease adaptor protein [Agrobacterium
           radiobacter K84]
 gi|221723298|gb|ACM26454.1| ATP-dependent Clp protease adaptor protein [Agrobacterium
           radiobacter K84]
          Length = 117

 Score =  135 bits (339), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 76/91 (83%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R  +K + P LYRVLL+ND+YTPMEFVIH+L+ FF KD E+A  IML VH+ G+GECG+
Sbjct: 27  TRTKAKTKKPNLYRVLLLNDDYTPMEFVIHILERFFQKDLESATRIMLHVHNHGVGECGI 86

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YE+AE KV+QVM+++RQHQ+PLQC+ME+K
Sbjct: 87  FTYEVAETKVSQVMDFARQHQHPLQCVMEKK 117


>gi|227821888|ref|YP_002825858.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
           fredii NGR234]
 gi|227340887|gb|ACP25105.1| ATP-dependent Clp protease adaptor protein ClpS 1 [Sinorhizobium
           fredii NGR234]
          Length = 117

 Score =  135 bits (339), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 73/91 (80%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R   K + P LYRVLL+ND+YTPMEFV+H+L+ FF KD E A  IML VH+ G+GECGV
Sbjct: 27  TRTKPKTKKPSLYRVLLLNDDYTPMEFVVHILERFFQKDREQATVIMLHVHNHGVGECGV 86

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YE+AE KV QVM+++RQHQ+PLQC+ME+K
Sbjct: 87  FTYEVAETKVTQVMDFARQHQHPLQCVMEKK 117


>gi|27380265|ref|NP_771794.1| ATP-dependent Clp protease adaptor protein ClpS [Bradyrhizobium
           japonicum USDA 110]
 gi|27353429|dbj|BAC50419.1| yljA [Bradyrhizobium japonicum USDA 110]
          Length = 130

 Score =  135 bits (339), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 58/91 (63%), Positives = 73/91 (80%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            +   K + P LYRVL++ND+YTPMEFV+HVL+ FF KD E A  IML VHH GIGECGV
Sbjct: 40  TKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLEKFFQKDVEAATKIMLHVHHHGIGECGV 99

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 100 FTYEIAETKVTQVMDFARKHQHPLQCVMEKK 130


>gi|158423218|ref|YP_001524510.1| ATP-dependent Clp protease adaptor protein [Azorhizobium
           caulinodans ORS 571]
 gi|158330107|dbj|BAF87592.1| ATP-dependent Clp protease adaptor protein [Azorhizobium
           caulinodans ORS 571]
          Length = 131

 Score =  135 bits (339), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 73/91 (80%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R   +V+ P LYRVLL+ND+YTPM+FV+HVL+ FF K  E A  IML VHH G+GECGV
Sbjct: 41  TRTKPQVKRPNLYRVLLLNDDYTPMDFVVHVLERFFSKSREEANTIMLHVHHHGVGECGV 100

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           Y YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 101 YTYEVAETKVTQVMDFARKHQHPLQCVMEKK 131


>gi|75675888|ref|YP_318309.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrobacter
           winogradskyi Nb-255]
 gi|74420758|gb|ABA04957.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrobacter
           winogradskyi Nb-255]
          Length = 136

 Score =  134 bits (338), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 74/91 (81%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            +  +K + P LYRVL++ND+YTPMEFV+HVL+ FF KD E A  IML VHH GIGECGV
Sbjct: 46  TKVRTKTKRPNLYRVLILNDDYTPMEFVVHVLEKFFQKDLEAATQIMLHVHHHGIGECGV 105

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 106 FTYEVAETKVTQVMDFARKHQHPLQCVMEKK 136


>gi|15888689|ref|NP_354370.1| ATP-dependent Clp protease adaptor protein ClpS [Agrobacterium
           tumefaciens str. C58]
 gi|24638402|sp|Q8UFN4|CLPS1_AGRT5 RecName: Full=ATP-dependent Clp protease adapter protein ClpS 1
 gi|15156427|gb|AAK87155.1| ATP-dependent Clp protease adaptor protein ClpS [Agrobacterium
           tumefaciens str. C58]
          Length = 117

 Score =  134 bits (338), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 58/91 (63%), Positives = 73/91 (80%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R   K + P LYRVLL+ND+YTPMEFVIH+L+ FF KD E A  IML VH  G+GECGV
Sbjct: 27  TRVKPKTKRPNLYRVLLLNDDYTPMEFVIHILERFFQKDREAATRIMLHVHQHGVGECGV 86

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YE+AE KV+QVM+++RQHQ+PLQC+ME+K
Sbjct: 87  FTYEVAETKVSQVMDFARQHQHPLQCVMEKK 117


>gi|85716350|ref|ZP_01047323.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrobacter sp.
           Nb-311A]
 gi|85696866|gb|EAQ34751.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrobacter sp.
           Nb-311A]
          Length = 110

 Score =  134 bits (338), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 61/110 (55%), Positives = 78/110 (70%), Gaps = 4/110 (3%)

Query: 29  DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
           D R   +G    D       +   K + P LYRVL++ND+YTPMEFV+HVL+ FF KD E
Sbjct: 5   DDRAGGRG----DPAASVITKVRPKTKRPNLYRVLILNDDYTPMEFVVHVLEKFFQKDLE 60

Query: 89  TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            A  IML VHH GIGECGV+ YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 61  AATQIMLHVHHHGIGECGVFTYEVAETKVTQVMDFARKHQHPLQCVMEKK 110


>gi|92117938|ref|YP_577667.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrobacter
           hamburgensis X14]
 gi|91800832|gb|ABE63207.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrobacter
           hamburgensis X14]
          Length = 124

 Score =  134 bits (338), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 58/91 (63%), Positives = 73/91 (80%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            +   K + P LYRVL++ND+YTPMEFV+HVL+ FF KD E A  IML VHH GIGECGV
Sbjct: 34  TKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLEKFFQKDVEAATEIMLHVHHHGIGECGV 93

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 94  FTYEIAETKVTQVMDFARKHQHPLQCVMEKK 124


>gi|299135164|ref|ZP_07028355.1| ATP-dependent Clp protease adaptor protein ClpS [Afipia sp. 1NLS2]
 gi|298590141|gb|EFI50345.1| ATP-dependent Clp protease adaptor protein ClpS [Afipia sp. 1NLS2]
          Length = 228

 Score =  134 bits (337), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 73/91 (80%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            +   + + P LYRVL++ND+YTPMEFV+HVL+ FF KD E A  IML VHH GIGECG+
Sbjct: 138 TKTKPRTKRPSLYRVLILNDDYTPMEFVVHVLERFFQKDVEAATKIMLHVHHHGIGECGI 197

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 198 FTYEIAETKVTQVMDFARKHQHPLQCVMEKK 228


>gi|325292723|ref|YP_004278587.1| ATP-dependent Clp protease adapter protein clpS 1 [Agrobacterium
           sp. H13-3]
 gi|325060576|gb|ADY64267.1| ATP-dependent Clp protease adapter protein clpS 1 [Agrobacterium
           sp. H13-3]
          Length = 117

 Score =  134 bits (337), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 58/91 (63%), Positives = 73/91 (80%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R   K + P LYRVLL+ND+YTPMEFVIH+L+ FF KD E A  IML VH  G+GECGV
Sbjct: 27  TRVKPKTKRPNLYRVLLLNDDYTPMEFVIHILERFFQKDREAATRIMLHVHQHGVGECGV 86

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YE+AE KV+QVM+++RQHQ+PLQC+ME+K
Sbjct: 87  FTYEVAETKVSQVMDFARQHQHPLQCVMEKK 117


>gi|37077096|sp|Q89JW5|CLPS2_BRAJA RecName: Full=ATP-dependent Clp protease adapter protein ClpS 2
          Length = 110

 Score =  134 bits (336), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 58/91 (63%), Positives = 73/91 (80%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            +   K + P LYRVL++ND+YTPMEFV+HVL+ FF KD E A  IML VHH GIGECGV
Sbjct: 20  TKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLEKFFQKDVEAATKIMLHVHHHGIGECGV 79

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 80  FTYEIAETKVTQVMDFARKHQHPLQCVMEKK 110


>gi|15965239|ref|NP_385592.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
           meliloti 1021]
 gi|307309262|ref|ZP_07588930.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
           meliloti BL225C]
 gi|307317004|ref|ZP_07596445.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
           meliloti AK83]
 gi|21542320|sp|Q92Q63|CLPS1_RHIME RecName: Full=ATP-dependent Clp protease adapter protein ClpS 1
 gi|15074419|emb|CAC46065.1| Putative ATP-dependent Clp protease adapter protein clpS 1
           [Sinorhizobium meliloti 1021]
 gi|306897092|gb|EFN27837.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
           meliloti AK83]
 gi|306900263|gb|EFN30880.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
           meliloti BL225C]
          Length = 117

 Score =  134 bits (336), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 73/91 (80%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R   K + P LYRVLL+ND+YTPMEFVIH+L+ FF K+ E A  IML VH+ G+GECGV
Sbjct: 27  TRTKPKTKKPSLYRVLLLNDDYTPMEFVIHILERFFQKNREEATVIMLHVHNHGVGECGV 86

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YE+AE KV QVM+++RQHQ+PLQC+ME+K
Sbjct: 87  FTYEVAETKVTQVMDFARQHQHPLQCVMEKK 117


>gi|148256120|ref|YP_001240705.1| ATP-dependent Clp protease adaptor protein ClpS, modulator of ClpA
           substrate specificity [Bradyrhizobium sp. BTAi1]
 gi|146408293|gb|ABQ36799.1| ATP-dependent Clp protease adaptor protein ClpS, modulator of ClpA
           substrate specificity [Bradyrhizobium sp. BTAi1]
          Length = 110

 Score =  134 bits (336), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 58/91 (63%), Positives = 73/91 (80%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            +   K + P LYRVL++ND+YTPMEFV+HVL+ FF KD E A  IML VHH GIGECGV
Sbjct: 20  TKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLEKFFNKDVEAATKIMLHVHHHGIGECGV 79

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 80  FTYEIAETKVTQVMDFARKHQHPLQCVMEKK 110


>gi|222148871|ref|YP_002549828.1| ATP-dependent Clp protease adaptor protein ClpS [Agrobacterium
           vitis S4]
 gi|221735857|gb|ACM36820.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 117

 Score =  134 bits (336), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 74/91 (81%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R   K + P LYRVLL+ND+YTPMEFVIH+L+ FF KD E A  +ML VH+ G+GECGV
Sbjct: 27  TRTKPKTKKPNLYRVLLLNDDYTPMEFVIHILERFFQKDREAATLVMLHVHNHGVGECGV 86

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YE+AE KV+QVM+++RQH++PLQC+ME+K
Sbjct: 87  FTYEVAETKVSQVMDFARQHEHPLQCVMEKK 117


>gi|114704886|ref|ZP_01437794.1| ATP-dependent Clp protease adaptor protein ClpS [Fulvimarina pelagi
           HTCC2506]
 gi|114539671|gb|EAU42791.1| ATP-dependent Clp protease adaptor protein ClpS [Fulvimarina pelagi
           HTCC2506]
          Length = 135

 Score =  133 bits (335), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 58/90 (64%), Positives = 72/90 (80%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R   K++ P LYRVLL+ND+YTPMEFVIHVL+ FF KD E A  IML VH  G+GECGV
Sbjct: 45  TRSKPKLQKPSLYRVLLLNDDYTPMEFVIHVLERFFQKDREAATQIMLHVHRHGVGECGV 104

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           + YE+AE KV QVM+++RQHQ+PLQC+ME+
Sbjct: 105 FTYEVAETKVTQVMDFARQHQHPLQCVMEK 134


>gi|90419585|ref|ZP_01227495.1| ATP-dependent Clp protease adaptor protein [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336522|gb|EAS50263.1| ATP-dependent Clp protease adaptor protein [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 122

 Score =  133 bits (335), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 58/90 (64%), Positives = 72/90 (80%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R   K + P LYRVLL+ND+YTPMEFVIHVL+ FF KD E A  IML VH+ G+GECGV
Sbjct: 32  TRTKPKTQKPSLYRVLLLNDDYTPMEFVIHVLERFFQKDREAATRIMLHVHNHGVGECGV 91

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           + YE+AE KV QVM+++RQHQ+PLQC+ME+
Sbjct: 92  FTYEVAETKVTQVMDFARQHQHPLQCVMEK 121


>gi|307946408|ref|ZP_07661743.1| ATP-dependent Clp protease adaptor protein ClpS [Roseibium sp.
           TrichSKD4]
 gi|307770072|gb|EFO29298.1| ATP-dependent Clp protease adaptor protein ClpS [Roseibium sp.
           TrichSKD4]
          Length = 110

 Score =  133 bits (335), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 75/91 (82%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R   K + P LYRVLL+ND+YTPMEFVIHV+++FF K+ E A  IML VHH G+GECG+
Sbjct: 20  TRTKPKTKRPNLYRVLLLNDDYTPMEFVIHVVESFFQKNREEATHIMLHVHHHGVGECGI 79

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           Y+YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 80  YSYEVAETKVTQVMDFARKHQHPLQCVMEKK 110


>gi|10442011|gb|AAG17283.1|AF254897_2 YljA [Bradyrhizobium japonicum USDA 110]
          Length = 97

 Score =  133 bits (335), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 58/91 (63%), Positives = 73/91 (80%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            +   K + P LYRVL++ND+YTPMEFV+HVL+ FF KD E A  IML VHH GIGECGV
Sbjct: 7   TKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLEKFFQKDVEAATKIMLHVHHHGIGECGV 66

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 67  FTYEIAETKVTQVMDFARKHQHPLQCVMEKK 97


>gi|316933620|ref|YP_004108602.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris DX-1]
 gi|315601334|gb|ADU43869.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris DX-1]
          Length = 132

 Score =  133 bits (334), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 78/109 (71%), Gaps = 2/109 (1%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRV--PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
           M  +G     N   + V   +K R   P LYRVL++ND+YTPMEFV+HVL+ FF  D E 
Sbjct: 24  MAGEGGRSGPNTPSTSVITKTKPRTKRPSLYRVLILNDDYTPMEFVVHVLEKFFQMDVEA 83

Query: 90  AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           A  +ML VHH GIGECGV+ YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 84  ATQVMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK 132


>gi|86749515|ref|YP_486011.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris HaA2]
 gi|86572543|gb|ABD07100.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris HaA2]
          Length = 132

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/124 (50%), Positives = 83/124 (66%), Gaps = 1/124 (0%)

Query: 16  DGILALMSFIFMADSRMNKKGIAEFDNCLDSEV-RFSSKVRVPKLYRVLLVNDNYTPMEF 74
           D + A +   + A       G A   +   S + +   K + P LYRVL++ND+YTPMEF
Sbjct: 9   DSVPASVGLSYRATRMAGDGGRAGSGSPTTSVITKVKPKTKRPNLYRVLILNDDYTPMEF 68

Query: 75  VIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCI 134
           V+HVL+ FF  D E A  +ML VHH GIGECGV+ YEIAE KV QVM+++R+HQ+PLQC+
Sbjct: 69  VVHVLEKFFQMDIEAATKVMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCV 128

Query: 135 MEQK 138
           ME+K
Sbjct: 129 MEKK 132


>gi|118591081|ref|ZP_01548480.1| ATP-dependent Clp protease adaptor protein ClpS [Stappia aggregata
           IAM 12614]
 gi|118436157|gb|EAV42799.1| ATP-dependent Clp protease adaptor protein ClpS [Stappia aggregata
           IAM 12614]
          Length = 121

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 56/82 (68%), Positives = 72/82 (87%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           P LYRVLL+ND+YTPMEFVIHV++NFF K+ E A  IML VHH G+GECG+Y+YE+AE K
Sbjct: 40  PNLYRVLLLNDDYTPMEFVIHVVENFFQKNREEATRIMLHVHHHGVGECGIYSYEVAETK 99

Query: 117 VNQVMNYSRQHQYPLQCIMEQK 138
           V QVM+++R+HQ+PLQC+ME+K
Sbjct: 100 VTQVMDFARKHQHPLQCVMEKK 121


>gi|254474220|ref|ZP_05087611.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudovibrio sp.
           JE062]
 gi|211956750|gb|EEA91959.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudovibrio sp.
           JE062]
          Length = 109

 Score =  132 bits (332), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 56/87 (64%), Positives = 73/87 (83%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            K + P LYRVLL+ND+YTPMEFVIHV++ FF+ D E+A  IML VHH G+GECGV+ YE
Sbjct: 23  PKTKRPSLYRVLLLNDDYTPMEFVIHVVERFFHLDRESATQIMLHVHHHGVGECGVFTYE 82

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           +AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 83  VAETKVTQVMDFARKHQHPLQCVMEKK 109


>gi|218673814|ref|ZP_03523483.1| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium etli
           GR56]
          Length = 86

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 74/86 (86%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           K + P LYRVLL+ND+YTPMEFVIH+L+ FF KD E+A  IML VH+ G+GECG++ YE+
Sbjct: 1   KTKKPNLYRVLLLNDDYTPMEFVIHILERFFQKDRESATRIMLHVHNHGVGECGIFTYEV 60

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQK 138
           AE KV+QVM+++RQHQ+PLQC+ME+K
Sbjct: 61  AETKVSQVMDFARQHQHPLQCVMEKK 86


>gi|188584527|ref|YP_001927972.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
           populi BJ001]
 gi|179348025|gb|ACB83437.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
           populi BJ001]
          Length = 131

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 73/91 (80%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R   + + P LYRVLL+ND+YTPMEFV+HV++ FF K HE A  IM+ VHH G+GECGV
Sbjct: 41  TRTKPRAKRPSLYRVLLLNDDYTPMEFVVHVVERFFNKSHEDAYQIMMHVHHNGVGECGV 100

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 101 FTYEVAETKVTQVMDFARKHQHPLQCVMEKK 131


>gi|154248457|ref|YP_001419415.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthobacter
           autotrophicus Py2]
 gi|154162542|gb|ABS69758.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthobacter
           autotrophicus Py2]
          Length = 124

 Score =  131 bits (330), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 73/90 (81%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R   + + P LYRVLL+ND+YTPMEFV+HVL+ FF KD + A  IML VH+ G+GECGV+
Sbjct: 35  RTKPQTKRPSLYRVLLLNDDYTPMEFVVHVLERFFNKDRDQANTIMLHVHNHGVGECGVF 94

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 95  TYEVAETKVTQVMDFARKHQHPLQCVMEKK 124


>gi|90424816|ref|YP_533186.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris BisB18]
 gi|90106830|gb|ABD88867.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris BisB18]
          Length = 137

 Score =  131 bits (329), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 72/91 (79%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            +   K + P LYRVL++ND+YTPMEFV+HVL+ FF  D E A  +ML VHH GIGECGV
Sbjct: 47  TKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLEKFFQMDVEAATQVMLHVHHHGIGECGV 106

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 107 FTYEIAETKVTQVMDFARKHQHPLQCVMEKK 137


>gi|218533142|ref|YP_002423958.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
           chloromethanicum CM4]
 gi|218525445|gb|ACK86030.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
           chloromethanicum CM4]
          Length = 131

 Score =  131 bits (329), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 73/91 (80%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R   + + P LYRVLL+ND+YTPMEFV+HV++ FF K H+ A  IM+ VHH G+GECGV
Sbjct: 41  TRTKPRAKRPSLYRVLLLNDDYTPMEFVVHVVERFFNKSHDDAYQIMMHVHHNGVGECGV 100

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 101 FTYEVAETKVTQVMDFARKHQHPLQCVMEKK 131


>gi|328543445|ref|YP_004303554.1| ATP-dependent Clp protease adaptor protein ClpS [Polymorphum gilvum
           SL003B-26A1]
 gi|326413189|gb|ADZ70252.1| ATP-dependent Clp protease adaptor protein ClpS [Polymorphum gilvum
           SL003B-26A1]
          Length = 109

 Score =  130 bits (328), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 56/82 (68%), Positives = 70/82 (85%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           P LYRVLL+ND+YTPMEFVIHV++ FF K+ E A  IML VHH G+GECGVY YE+AE K
Sbjct: 28  PNLYRVLLLNDDYTPMEFVIHVVERFFQKNREEATRIMLHVHHHGVGECGVYTYEVAETK 87

Query: 117 VNQVMNYSRQHQYPLQCIMEQK 138
           V QVM+++R+HQ+PLQC+ME+K
Sbjct: 88  VTQVMDFARKHQHPLQCVMEKK 109


>gi|163854197|ref|YP_001642240.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
           extorquens PA1]
 gi|240141657|ref|YP_002966137.1| ATP-dependent Clp protease adaptor protein clpS [Methylobacterium
           extorquens AM1]
 gi|254564165|ref|YP_003071260.1| ATP-dependent Clp protease adaptor protein clpS [Methylobacterium
           extorquens DM4]
 gi|163665802|gb|ABY33169.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
           extorquens PA1]
 gi|240011634|gb|ACS42860.1| ATP-dependent Clp protease adaptor protein clpS [Methylobacterium
           extorquens AM1]
 gi|254271443|emb|CAX27458.1| ATP-dependent Clp protease adaptor protein clpS [Methylobacterium
           extorquens DM4]
          Length = 112

 Score =  130 bits (328), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 73/91 (80%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R   + + P LYRVLL+ND+YTPMEFV+HV++ FF K H+ A  IM+ VHH G+GECGV
Sbjct: 22  TRTKPRAKRPSLYRVLLLNDDYTPMEFVVHVVERFFNKSHDDAYQIMMHVHHNGVGECGV 81

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 82  FTYEVAETKVTQVMDFARKHQHPLQCVMEKK 112


>gi|91977524|ref|YP_570183.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris BisB5]
 gi|91683980|gb|ABE40282.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris BisB5]
          Length = 109

 Score =  130 bits (328), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 72/91 (79%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            +   K + P LYRVL++ND+YTPMEFV+HVL+ FF  D E A  +ML VHH GIGECGV
Sbjct: 19  TKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLEKFFQMDVEAATQVMLHVHHHGIGECGV 78

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 79  FTYEIAETKVTQVMDFARKHQHPLQCVMEKK 109


>gi|23502048|ref|NP_698175.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella suis
           1330]
 gi|62290083|ref|YP_221876.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus
           bv. 1 str. 9-941]
 gi|82700008|ref|YP_414582.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella
           melitensis biovar Abortus 2308]
 gi|148559927|ref|YP_001259088.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella ovis ATCC
           25840]
 gi|225627638|ref|ZP_03785675.1| ATP-dependent Clp protease adapter protein clpS [Brucella ceti str.
           Cudo]
 gi|237815589|ref|ZP_04594586.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
           str. 2308 A]
 gi|256369595|ref|YP_003107105.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella microti
           CCM 4915]
 gi|297248480|ref|ZP_06932198.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus
           bv. 5 str. B3196]
 gi|23348003|gb|AAN30090.1| conserved hypothetical protein [Brucella suis 1330]
 gi|62196215|gb|AAX74515.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
 gi|82616109|emb|CAJ11148.1| Protein of unknown function DUF174 [Brucella melitensis biovar
           Abortus 2308]
 gi|148371184|gb|ABQ61163.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella ovis ATCC
           25840]
 gi|225617643|gb|EEH14688.1| ATP-dependent Clp protease adapter protein clpS [Brucella ceti str.
           Cudo]
 gi|237788887|gb|EEP63098.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
           str. 2308 A]
 gi|255999757|gb|ACU48156.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella microti
           CCM 4915]
 gi|297175649|gb|EFH34996.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus
           bv. 5 str. B3196]
          Length = 136

 Score =  130 bits (327), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 74/91 (81%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R   K R P LYRVLL+ND+YTPMEFV+HVLQ FF K+ + A  IML VH+ G+GECGV
Sbjct: 46  TRTQPKTRKPSLYRVLLLNDDYTPMEFVVHVLQRFFQKNLDDATRIMLHVHNHGVGECGV 105

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YE+AE KV+QVM+++RQ+Q+PLQC+ME+K
Sbjct: 106 FTYEVAETKVSQVMDFARQNQHPLQCVMEKK 136


>gi|39936211|ref|NP_948487.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris CGA009]
 gi|39650066|emb|CAE28589.1| DUF174 [Rhodopseudomonas palustris CGA009]
          Length = 132

 Score =  130 bits (327), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 72/91 (79%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            +   + + P LYRVL++ND+YTPMEFV+HVL+ FF  D E A  +ML VHH GIGECGV
Sbjct: 42  TKTKPRTKRPNLYRVLILNDDYTPMEFVVHVLEKFFQMDVEAATKVMLHVHHHGIGECGV 101

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 102 FTYEIAETKVTQVMDFARKHQHPLQCVMEKK 132


>gi|17987098|ref|NP_539732.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella
           melitensis bv. 1 str. 16M]
 gi|17982759|gb|AAL51996.1| protein ylja [Brucella melitensis bv. 1 str. 16M]
          Length = 136

 Score =  130 bits (327), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 74/91 (81%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R   K R P LYRVLL+ND+YTPMEFV+HVLQ FF K+ + A  IML VH+ G+GECGV
Sbjct: 46  TRTQPKTRKPSLYRVLLLNDDYTPMEFVVHVLQRFFQKNLDDATRIMLHVHNHGVGECGV 105

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YE+AE KV+QVM+++RQ+Q+PLQC+ME+K
Sbjct: 106 FTYEVAETKVSQVMDFARQNQHPLQCVMEKK 136


>gi|225852667|ref|YP_002732900.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella
           melitensis ATCC 23457]
 gi|256044825|ref|ZP_05447729.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256113730|ref|ZP_05454534.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella
           melitensis bv. 3 str. Ether]
 gi|260565575|ref|ZP_05836059.1| ATP-dependent Clp protease adapter protein clpS [Brucella
           melitensis bv. 1 str. 16M]
 gi|21542304|sp|Q8YHI3|CLPS_BRUME RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|254763811|sp|C0RJD8|CLPS_BRUMB RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|225641032|gb|ACO00946.1| ATP-dependent Clp protease adapter protein clpS [Brucella
           melitensis ATCC 23457]
 gi|260151643|gb|EEW86737.1| ATP-dependent Clp protease adapter protein clpS [Brucella
           melitensis bv. 1 str. 16M]
 gi|326409188|gb|ADZ66253.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella
           melitensis M28]
          Length = 116

 Score =  130 bits (327), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 74/91 (81%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R   K R P LYRVLL+ND+YTPMEFV+HVLQ FF K+ + A  IML VH+ G+GECGV
Sbjct: 26  TRTQPKTRKPSLYRVLLLNDDYTPMEFVVHVLQRFFQKNLDDATRIMLHVHNHGVGECGV 85

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YE+AE KV+QVM+++RQ+Q+PLQC+ME+K
Sbjct: 86  FTYEVAETKVSQVMDFARQNQHPLQCVMEKK 116


>gi|161619121|ref|YP_001593008.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella canis
           ATCC 23365]
 gi|163843434|ref|YP_001627838.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella suis ATCC
           23445]
 gi|189024321|ref|YP_001935089.1| Protein of unknown function DUF174 [Brucella abortus S19]
 gi|254689393|ref|ZP_05152647.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus
           bv. 6 str. 870]
 gi|254693877|ref|ZP_05155705.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus
           bv. 3 str. Tulya]
 gi|254697528|ref|ZP_05159356.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254704457|ref|ZP_05166285.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella suis bv.
           3 str. 686]
 gi|254706649|ref|ZP_05168477.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella
           pinnipedialis M163/99/10]
 gi|254710244|ref|ZP_05172055.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella
           pinnipedialis B2/94]
 gi|254714240|ref|ZP_05176051.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella ceti
           M644/93/1]
 gi|254717676|ref|ZP_05179487.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella ceti
           M13/05/1]
 gi|254719232|ref|ZP_05181043.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp.
           83/13]
 gi|254730423|ref|ZP_05189001.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus
           bv. 4 str. 292]
 gi|256031738|ref|ZP_05445352.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella
           pinnipedialis M292/94/1]
 gi|256061251|ref|ZP_05451402.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella neotomae
           5K33]
 gi|256159904|ref|ZP_05457626.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella ceti
           M490/95/1]
 gi|256255138|ref|ZP_05460674.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella ceti
           B1/94]
 gi|256257639|ref|ZP_05463175.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus
           bv. 9 str. C68]
 gi|260168871|ref|ZP_05755682.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp.
           F5/99]
 gi|260546633|ref|ZP_05822372.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
           NCTC 8038]
 gi|260754911|ref|ZP_05867259.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
           bv. 6 str. 870]
 gi|260758128|ref|ZP_05870476.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
           bv. 4 str. 292]
 gi|260761954|ref|ZP_05874297.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260883923|ref|ZP_05895537.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
           bv. 9 str. C68]
 gi|261219517|ref|ZP_05933798.1| ATP-dependent Clp protease adapter protein clpS [Brucella ceti
           M13/05/1]
 gi|261322012|ref|ZP_05961209.1| ATP-dependent Clp protease adapter protein clpS [Brucella ceti
           M644/93/1]
 gi|261325259|ref|ZP_05964456.1| ATP-dependent Clp protease adapter protein clpS [Brucella neotomae
           5K33]
 gi|265984227|ref|ZP_06096962.1| ATP-dependent Clp protease adapter protein clpS [Brucella sp.
           83/13]
 gi|265998300|ref|ZP_06110857.1| ATP-dependent Clp protease adapter protein clpS [Brucella ceti
           M490/95/1]
 gi|306837981|ref|ZP_07470839.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp. NF
           2653]
 gi|306841893|ref|ZP_07474573.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp. BO2]
 gi|306844034|ref|ZP_07476629.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp. BO1]
 gi|37077259|sp|Q8G0C9|CLPS_BRUSU RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|189082472|sp|A9M5I2|CLPS_BRUC2 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|189082473|sp|B0CGW7|CLPS_BRUSI RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238689379|sp|B2S618|CLPS_BRUA1 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|161335932|gb|ABX62237.1| ATP-dependent Clp protease adaptor protein clpS [Brucella canis
           ATCC 23365]
 gi|163674157|gb|ABY38268.1| ATP-dependent Clp protease adaptor protein clpS [Brucella suis ATCC
           23445]
 gi|189019893|gb|ACD72615.1| Protein of unknown function DUF174 [Brucella abortus S19]
 gi|260095683|gb|EEW79560.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
           NCTC 8038]
 gi|260668446|gb|EEX55386.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
           bv. 4 str. 292]
 gi|260672386|gb|EEX59207.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260675019|gb|EEX61840.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
           bv. 6 str. 870]
 gi|260873451|gb|EEX80520.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
           bv. 9 str. C68]
 gi|260924606|gb|EEX91174.1| ATP-dependent Clp protease adapter protein clpS [Brucella ceti
           M13/05/1]
 gi|261294702|gb|EEX98198.1| ATP-dependent Clp protease adapter protein clpS [Brucella ceti
           M644/93/1]
 gi|261301239|gb|EEY04736.1| ATP-dependent Clp protease adapter protein clpS [Brucella neotomae
           5K33]
 gi|262552768|gb|EEZ08758.1| ATP-dependent Clp protease adapter protein clpS [Brucella ceti
           M490/95/1]
 gi|264662819|gb|EEZ33080.1| ATP-dependent Clp protease adapter protein clpS [Brucella sp.
           83/13]
 gi|306275789|gb|EFM57513.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp. BO1]
 gi|306288023|gb|EFM59425.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp. BO2]
 gi|306406905|gb|EFM63126.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp. NF
           2653]
          Length = 116

 Score =  130 bits (326), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 74/91 (81%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R   K R P LYRVLL+ND+YTPMEFV+HVLQ FF K+ + A  IML VH+ G+GECGV
Sbjct: 26  TRTQPKTRKPSLYRVLLLNDDYTPMEFVVHVLQRFFQKNLDDATRIMLHVHNHGVGECGV 85

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YE+AE KV+QVM+++RQ+Q+PLQC+ME+K
Sbjct: 86  FTYEVAETKVSQVMDFARQNQHPLQCVMEKK 116


>gi|239832059|ref|ZP_04680388.1| ATP-dependent Clp protease adapter protein clpS [Ochrobactrum
           intermedium LMG 3301]
 gi|239824326|gb|EEQ95894.1| ATP-dependent Clp protease adapter protein clpS [Ochrobactrum
           intermedium LMG 3301]
          Length = 148

 Score =  130 bits (326), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 74/91 (81%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R   K + P LYRVLL+ND+YTPMEFV+HVLQ FF K+ + A  IML VH+ G+GECGV
Sbjct: 58  TRTQPKTKKPSLYRVLLLNDDYTPMEFVVHVLQRFFQKNRDDATRIMLHVHNHGVGECGV 117

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YE+AE KV+QVM+++RQ+Q+PLQC+ME+K
Sbjct: 118 FTYEVAETKVSQVMDFARQNQHPLQCVMEKK 148


>gi|260566297|ref|ZP_05836767.1| ATP-dependent Clp protease adapter protein clpS [Brucella suis bv.
           4 str. 40]
 gi|261214163|ref|ZP_05928444.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
           bv. 3 str. Tulya]
 gi|261222336|ref|ZP_05936617.1| ATP-dependent Clp protease adapter protein clpS [Brucella ceti
           B1/94]
 gi|261314110|ref|ZP_05953307.1| ATP-dependent Clp protease adapter protein clpS [Brucella
           pinnipedialis M163/99/10]
 gi|261317803|ref|ZP_05957000.1| ATP-dependent Clp protease adapter protein clpS [Brucella
           pinnipedialis B2/94]
 gi|261755135|ref|ZP_05998844.1| ATP-dependent Clp protease adapter protein clpS [Brucella suis bv.
           3 str. 686]
 gi|261758359|ref|ZP_06002068.1| ATP-dependent Clp protease adapter protein clpS [Brucella sp.
           F5/99]
 gi|265988834|ref|ZP_06101391.1| ATP-dependent Clp protease adapter protein clpS [Brucella
           pinnipedialis M292/94/1]
 gi|265991249|ref|ZP_06103806.1| ATP-dependent Clp protease adapter protein clpS [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265995085|ref|ZP_06107642.1| ATP-dependent Clp protease adapter protein clpS [Brucella
           melitensis bv. 3 str. Ether]
 gi|265999441|ref|ZP_05466371.2| ATP-dependent Clp protease adapter protein clpS [Brucella
           melitensis bv. 2 str. 63/9]
 gi|294852509|ref|ZP_06793182.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp. NVSL
           07-0026]
 gi|260155815|gb|EEW90895.1| ATP-dependent Clp protease adapter protein clpS [Brucella suis bv.
           4 str. 40]
 gi|260915770|gb|EEX82631.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
           bv. 3 str. Tulya]
 gi|260920920|gb|EEX87573.1| ATP-dependent Clp protease adapter protein clpS [Brucella ceti
           B1/94]
 gi|261297026|gb|EEY00523.1| ATP-dependent Clp protease adapter protein clpS [Brucella
           pinnipedialis B2/94]
 gi|261303136|gb|EEY06633.1| ATP-dependent Clp protease adapter protein clpS [Brucella
           pinnipedialis M163/99/10]
 gi|261738343|gb|EEY26339.1| ATP-dependent Clp protease adapter protein clpS [Brucella sp.
           F5/99]
 gi|261744888|gb|EEY32814.1| ATP-dependent Clp protease adapter protein clpS [Brucella suis bv.
           3 str. 686]
 gi|262766198|gb|EEZ11987.1| ATP-dependent Clp protease adapter protein clpS [Brucella
           melitensis bv. 3 str. Ether]
 gi|263002033|gb|EEZ14608.1| ATP-dependent Clp protease adapter protein clpS [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263093970|gb|EEZ17904.1| ATP-dependent Clp protease adapter protein clpS [Brucella
           melitensis bv. 2 str. 63/9]
 gi|264661031|gb|EEZ31292.1| ATP-dependent Clp protease adapter protein clpS [Brucella
           pinnipedialis M292/94/1]
 gi|294821098|gb|EFG38097.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp. NVSL
           07-0026]
          Length = 109

 Score =  130 bits (326), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 74/91 (81%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R   K R P LYRVLL+ND+YTPMEFV+HVLQ FF K+ + A  IML VH+ G+GECGV
Sbjct: 19  TRTQPKTRKPSLYRVLLLNDDYTPMEFVVHVLQRFFQKNLDDATRIMLHVHNHGVGECGV 78

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YE+AE KV+QVM+++RQ+Q+PLQC+ME+K
Sbjct: 79  FTYEVAETKVSQVMDFARQNQHPLQCVMEKK 109


>gi|192291927|ref|YP_001992532.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris TIE-1]
 gi|192285676|gb|ACF02057.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris TIE-1]
          Length = 115

 Score =  130 bits (326), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 72/91 (79%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            +   + + P LYRVL++ND+YTPMEFV+HVL+ FF  D E A  +ML VHH GIGECGV
Sbjct: 25  TKTKPRTKRPNLYRVLILNDDYTPMEFVVHVLEKFFQMDVEAATKVMLHVHHHGIGECGV 84

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 85  FTYEIAETKVTQVMDFARKHQHPLQCVMEKK 115


>gi|67460482|sp|Q6N535|CLPS2_RHOPA RecName: Full=ATP-dependent Clp protease adapter protein ClpS 2
          Length = 109

 Score =  129 bits (325), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 72/91 (79%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            +   + + P LYRVL++ND+YTPMEFV+HVL+ FF  D E A  +ML VHH GIGECGV
Sbjct: 19  TKTKPRTKRPNLYRVLILNDDYTPMEFVVHVLEKFFQMDVEAATKVMLHVHHHGIGECGV 78

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 79  FTYEIAETKVTQVMDFARKHQHPLQCVMEKK 109


>gi|153009350|ref|YP_001370565.1| ATP-dependent Clp protease adaptor protein ClpS [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561238|gb|ABS14736.1| ATP-dependent Clp protease adaptor protein ClpS [Ochrobactrum
           anthropi ATCC 49188]
          Length = 124

 Score =  129 bits (325), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 74/91 (81%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R   K + P LYRVLL+ND+YTPMEFV+HVLQ FF K+ + A  IML VH+ G+GECGV
Sbjct: 34  TRTQPKTKKPSLYRVLLLNDDYTPMEFVVHVLQRFFQKNQDDATRIMLHVHNHGVGECGV 93

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YE+AE KV+QVM+++RQ+Q+PLQC+ME+K
Sbjct: 94  FTYEVAETKVSQVMDFARQNQHPLQCVMEKK 124


>gi|146341455|ref|YP_001206503.1| ATP-dependent Clp protease adaptor protein ClpS, modulator of ClpA
           substrate specificity [Bradyrhizobium sp. ORS278]
 gi|146194261|emb|CAL78283.1| ATP-dependent Clp protease adaptor protein ClpS, modulator of ClpA
           substrate specificity [Bradyrhizobium sp. ORS278]
          Length = 110

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 72/91 (79%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            +   K + P LYRVL++ND+YTPMEFV+ VL+ FF KD E A  IML VHH GIGECGV
Sbjct: 20  TKVKPKTKRPNLYRVLILNDDYTPMEFVVLVLEKFFNKDVEAATKIMLHVHHHGIGECGV 79

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 80  FTYEIAETKVTQVMDFARKHQHPLQCVMEKK 110


>gi|254503825|ref|ZP_05115976.1| ATP-dependent Clp protease adaptor protein ClpS [Labrenzia
           alexandrii DFL-11]
 gi|222439896|gb|EEE46575.1| ATP-dependent Clp protease adaptor protein ClpS [Labrenzia
           alexandrii DFL-11]
          Length = 110

 Score =  129 bits (324), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 55/82 (67%), Positives = 71/82 (86%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           P LYRVLL+ND+YTPMEFVIHV+++FF K+ E A  IML VHH G+GECG+Y YE+AE K
Sbjct: 29  PNLYRVLLLNDDYTPMEFVIHVVESFFQKNREEATRIMLHVHHHGVGECGIYTYEVAETK 88

Query: 117 VNQVMNYSRQHQYPLQCIMEQK 138
           V QVM+++R+HQ+PLQC+ME+K
Sbjct: 89  VTQVMDFARRHQHPLQCVMEKK 110


>gi|300022147|ref|YP_003754758.1| ATP-dependent Clp protease adaptor protein ClpS [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299523968|gb|ADJ22437.1| ATP-dependent Clp protease adaptor protein ClpS [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 129

 Score =  129 bits (324), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/124 (51%), Positives = 80/124 (64%), Gaps = 4/124 (3%)

Query: 19  LALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRV----PKLYRVLLVNDNYTPMEF 74
           L + + I MA       G    D   DS+    +K R     P LY+VLL+ND++TPMEF
Sbjct: 6   LPIAALIRMAGKDDPPNGPGRDDRDGDSKTGIVTKTRPKTKKPSLYKVLLLNDDFTPMEF 65

Query: 75  VIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCI 134
           V+ VLQ FF K  E A  IML VHH+G+G CGVY YEIAE KV QVM++SRQH +PLQC 
Sbjct: 66  VVLVLQRFFNKGQEDATRIMLHVHHKGVGICGVYTYEIAETKVTQVMDFSRQHGHPLQCT 125

Query: 135 MEQK 138
           ME++
Sbjct: 126 MEKE 129


>gi|115525406|ref|YP_782317.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris BisA53]
 gi|115519353|gb|ABJ07337.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris BisA53]
          Length = 109

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 72/91 (79%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            +   + + P +YRVL++ND+YTPMEFV+HVL+ FF  D E A  +ML VHH GIGECGV
Sbjct: 19  TKTKPRTKRPSMYRVLILNDDYTPMEFVVHVLEKFFQMDVEAATKVMLHVHHHGIGECGV 78

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 79  FTYEIAETKVTQVMDFARKHQHPLQCVMEKK 109


>gi|163760870|ref|ZP_02167949.1| ATP-dependent Clp protease adaptor protein ClpS [Hoeflea
           phototrophica DFL-43]
 gi|162281914|gb|EDQ32206.1| ATP-dependent Clp protease adaptor protein ClpS [Hoeflea
           phototrophica DFL-43]
          Length = 122

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 75/105 (71%)

Query: 34  KKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
           K G    D       R   +V+ P LYRVLL+ND+YTPMEFVIHVL+ FF KD + A  I
Sbjct: 18  KTGDGGSDRGTSVITRTKPQVKKPSLYRVLLLNDDYTPMEFVIHVLERFFQKDRDQATRI 77

Query: 94  MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           ML VH+ G+GECGV+ YE+AE KV QVM+++R + +PLQC+ME+K
Sbjct: 78  MLHVHNHGVGECGVFTYEVAETKVTQVMDFARTNHHPLQCVMEKK 122


>gi|254701912|ref|ZP_05163740.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella suis bv.
           5 str. 513]
          Length = 116

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 74/91 (81%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R   K R P LYRVLL+ND+YTPMEFV+HVLQ FF K+ + A  IML VH+ G+GECG+
Sbjct: 26  TRTQPKTRKPSLYRVLLLNDDYTPMEFVVHVLQRFFQKNLDDATRIMLHVHNHGVGECGM 85

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YE+AE KV+QVM+++RQ+Q+PLQC+ME+K
Sbjct: 86  FTYEVAETKVSQVMDFARQNQHPLQCVMEKK 116


>gi|170747222|ref|YP_001753482.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653744|gb|ACB22799.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
           radiotolerans JCM 2831]
          Length = 128

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/128 (48%), Positives = 81/128 (63%), Gaps = 10/128 (7%)

Query: 11  HRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYT 70
           HR  R  + A  S     D R N   I           R   + + P LYRVLL+ND+YT
Sbjct: 11  HRPARIAVTASGSRAPGGDDRSNTAII----------TRTKPRTKRPSLYRVLLLNDDYT 60

Query: 71  PMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYP 130
           PMEFV+ V++ FF K HE A  IM+ VH  G+GECGV+ YE+AE KV QVM+++R+HQ+P
Sbjct: 61  PMEFVVLVVERFFNKSHEDAYHIMMHVHQNGVGECGVFTYEVAETKVTQVMDFARKHQHP 120

Query: 131 LQCIMEQK 138
           LQC+ME+K
Sbjct: 121 LQCVMEKK 128


>gi|260459200|ref|ZP_05807455.1| ATP-dependent Clp protease adaptor protein ClpS [Mesorhizobium
           opportunistum WSM2075]
 gi|259034754|gb|EEW36010.1| ATP-dependent Clp protease adaptor protein ClpS [Mesorhizobium
           opportunistum WSM2075]
          Length = 131

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 54/82 (65%), Positives = 71/82 (86%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           P LYRVL++ND+YTPMEFV+HVL+ FF KD E A  IML VH+ G+GECGVY +E+AE K
Sbjct: 50  PSLYRVLILNDDYTPMEFVVHVLERFFQKDREAATRIMLHVHNHGVGECGVYTFEVAETK 109

Query: 117 VNQVMNYSRQHQYPLQCIMEQK 138
           V+QVM+++RQ+Q+PLQC+ME+K
Sbjct: 110 VSQVMDFARQNQHPLQCVMEKK 131


>gi|261752476|ref|ZP_05996185.1| ATP-dependent Clp protease adapter protein clpS [Brucella suis bv.
           5 str. 513]
 gi|261742229|gb|EEY30155.1| ATP-dependent Clp protease adapter protein clpS [Brucella suis bv.
           5 str. 513]
          Length = 109

 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 74/91 (81%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R   K R P LYRVLL+ND+YTPMEFV+HVLQ FF K+ + A  IML VH+ G+GECG+
Sbjct: 19  TRTQPKTRKPSLYRVLLLNDDYTPMEFVVHVLQRFFQKNLDDATRIMLHVHNHGVGECGM 78

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YE+AE KV+QVM+++RQ+Q+PLQC+ME+K
Sbjct: 79  FTYEVAETKVSQVMDFARQNQHPLQCVMEKK 109


>gi|319783684|ref|YP_004143160.1| ATP-dependent Clp protease adaptor protein ClpS [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317169572|gb|ADV13110.1| ATP-dependent Clp protease adaptor protein ClpS [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 122

 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 54/82 (65%), Positives = 71/82 (86%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           P LYRVL++ND+YTPMEFV+HVL+ FF KD E A  IML VH+ G+GECGVY +E+AE K
Sbjct: 41  PSLYRVLILNDDYTPMEFVVHVLERFFQKDREAATRIMLHVHNHGVGECGVYTFEVAETK 100

Query: 117 VNQVMNYSRQHQYPLQCIMEQK 138
           V+QVM+++RQ+Q+PLQC+ME+K
Sbjct: 101 VSQVMDFARQNQHPLQCVMEKK 122


>gi|312113135|ref|YP_004010731.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311218264|gb|ADP69632.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 128

 Score =  127 bits (320), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 57/100 (57%), Positives = 75/100 (75%), Gaps = 2/100 (2%)

Query: 41  DNCLDSE--VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           DN L +    +   K + P LY+VLL+ND+YTPMEFV++VL+ FF K HE A  IM+ VH
Sbjct: 29  DNGLKTGAVTKTRPKTKRPSLYKVLLLNDDYTPMEFVVYVLERFFNKPHEEATLIMMHVH 88

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            +G+G CGVY YE+AE KV QVMN++RQHQ+PLQC ME++
Sbjct: 89  QKGVGICGVYTYEVAETKVTQVMNFARQHQHPLQCTMEKE 128


>gi|13470855|ref|NP_102424.1| ATP-dependent Clp protease adaptor protein ClpS [Mesorhizobium loti
           MAFF303099]
 gi|21542310|sp|Q98MA3|CLPS1_RHILO RecName: Full=ATP-dependent Clp protease adapter protein ClpS 1
 gi|14021598|dbj|BAB48210.1| mll0664 [Mesorhizobium loti MAFF303099]
          Length = 109

 Score =  127 bits (320), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 54/82 (65%), Positives = 71/82 (86%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           P LYRVL++ND+YTPMEFV+HVL+ FF KD E A  IML VH+ G+GECGVY +E+AE K
Sbjct: 28  PSLYRVLILNDDYTPMEFVVHVLERFFQKDREAATRIMLHVHNHGVGECGVYTFEVAETK 87

Query: 117 VNQVMNYSRQHQYPLQCIMEQK 138
           V+QVM+++RQ+Q+PLQC+ME+K
Sbjct: 88  VSQVMDFARQNQHPLQCVMEKK 109


>gi|217976934|ref|YP_002361081.1| ATP-dependent Clp protease adaptor protein ClpS [Methylocella
           silvestris BL2]
 gi|217502310|gb|ACK49719.1| ATP-dependent Clp protease adaptor protein ClpS [Methylocella
           silvestris BL2]
          Length = 169

 Score =  127 bits (318), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 71/91 (78%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R  ++ R P +YRVLL+ND+YTPMEFV+ VL+ +F K  E A  IML VH  G+GECGV
Sbjct: 79  TRTKTQTRRPSMYRVLLLNDDYTPMEFVVAVLKKYFNKGPEEATRIMLHVHQHGVGECGV 138

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YE+AE KV QVM+Y+R+HQ+PLQCIME+K
Sbjct: 139 FTYEVAETKVTQVMDYARKHQHPLQCIMEKK 169


>gi|170740498|ref|YP_001769153.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
           sp. 4-46]
 gi|168194772|gb|ACA16719.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
           sp. 4-46]
          Length = 142

 Score =  126 bits (317), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 53/82 (64%), Positives = 68/82 (82%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           P LYRVLL+ND+YTPMEFV+HV++ FF K  E A  IML VH  G+GECGV+ YE+AE K
Sbjct: 61  PNLYRVLLLNDDYTPMEFVVHVVERFFNKSREDATRIMLHVHQNGVGECGVFTYEVAETK 120

Query: 117 VNQVMNYSRQHQYPLQCIMEQK 138
           V QVM+++R+HQ+PLQC+ME+K
Sbjct: 121 VTQVMDFARKHQHPLQCVMEKK 142


>gi|182678642|ref|YP_001832788.1| ATP-dependent Clp protease adaptor protein ClpS [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182634525|gb|ACB95299.1| ATP-dependent Clp protease adaptor protein ClpS [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 137

 Score =  126 bits (317), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 71/91 (78%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R  ++ R P +YRVLL+ND+YTPMEFV+ VL+ +F K  E A  IML VH  G+GECG+
Sbjct: 47  TRPKTQTRRPSMYRVLLLNDDYTPMEFVVSVLKKYFNKGPEEATRIMLHVHQHGVGECGI 106

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YE+AE KV QVM+Y+R+HQ+PLQCIME+K
Sbjct: 107 FTYEVAETKVTQVMDYARKHQHPLQCIMEKK 137


>gi|220920395|ref|YP_002495696.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
           nodulans ORS 2060]
 gi|219945001|gb|ACL55393.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
           nodulans ORS 2060]
          Length = 135

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 53/82 (64%), Positives = 68/82 (82%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           P LYRVLL+ND+YTPMEFV+HV++ FF K  E A  IML VH  G+GECGV+ YE+AE K
Sbjct: 54  PNLYRVLLLNDDYTPMEFVVHVVERFFNKSREDATRIMLHVHQNGVGECGVFTYEVAETK 113

Query: 117 VNQVMNYSRQHQYPLQCIMEQK 138
           V QVM+++R+HQ+PLQC+ME+K
Sbjct: 114 VTQVMDFARKHQHPLQCVMEKK 135


>gi|294013244|ref|YP_003546704.1| ATP-dependent Clp protease adaptor protein ClpS [Sphingobium
           japonicum UT26S]
 gi|292676574|dbj|BAI98092.1| ATP-dependent Clp protease adaptor protein ClpS [Sphingobium
           japonicum UT26S]
          Length = 135

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 79/113 (69%)

Query: 25  IFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFY 84
           + MA    + +G       +    R  ++ + P LY+VL++ND+YTPMEFV+HVLQ FF 
Sbjct: 22  VTMAGRDQDDQGDGSGGPNVGIATRTRARTKKPSLYKVLMLNDDYTPMEFVVHVLQQFFR 81

Query: 85  KDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            D E A  +ML VH +G+G CG+++YE+AE KVNQVM+++RQ+Q+PLQC +E+
Sbjct: 82  MDMEEATRVMLHVHQRGVGVCGIFSYEVAETKVNQVMDFARQNQHPLQCTLEK 134


>gi|94495922|ref|ZP_01302501.1| hypothetical protein SKA58_15107 [Sphingomonas sp. SKA58]
 gi|94424614|gb|EAT09636.1| hypothetical protein SKA58_15107 [Sphingomonas sp. SKA58]
          Length = 124

 Score =  123 bits (309), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 80/113 (70%)

Query: 25  IFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFY 84
           + MA    + +G       +    R  ++ + P LY+VL++ND+YTPMEFV+HVLQ+FF 
Sbjct: 11  VNMAGRDQDDQGEGPGGPNVGIATRTRTRTKKPSLYKVLMLNDDYTPMEFVVHVLQSFFR 70

Query: 85  KDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            D E A  +ML VH +G+G CG+++YE+AE KVNQVM+++RQ+Q+PLQC +E+
Sbjct: 71  MDMEEATRVMLHVHQRGVGICGIFSYEVAETKVNQVMDFARQNQHPLQCTLEK 123


>gi|304391581|ref|ZP_07373523.1| ATP-dependent Clp protease adapter protein ClpS 1 [Ahrensia sp.
           R2A130]
 gi|303295810|gb|EFL90168.1| ATP-dependent Clp protease adapter protein ClpS 1 [Ahrensia sp.
           R2A130]
          Length = 130

 Score =  123 bits (309), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 70/91 (76%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R   K++ P LYRVLL+ND++TPMEFVI +L  FF  + E A  +ML VH  G+GECGV
Sbjct: 40  TRTKPKLKKPSLYRVLLLNDDFTPMEFVIEILARFFQMNMEQATQVMLHVHQNGVGECGV 99

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           Y YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 100 YTYEVAETKVTQVMDHARKHQHPLQCVMEKK 130


>gi|307294031|ref|ZP_07573875.1| ATP-dependent Clp protease adaptor protein ClpS [Sphingobium
           chlorophenolicum L-1]
 gi|306880182|gb|EFN11399.1| ATP-dependent Clp protease adaptor protein ClpS [Sphingobium
           chlorophenolicum L-1]
          Length = 112

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 53/111 (47%), Positives = 78/111 (70%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           MA    + +G       +    R  ++ + P LY+VL++ND+YTPMEFV+HVLQ FF  D
Sbjct: 1   MAGRDQDDQGDGSGGPNVGIATRTRARTKKPSLYKVLMLNDDYTPMEFVVHVLQQFFRMD 60

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            E A  +ML VH +G+G CG+++YE+AE KVNQVM+++RQ+Q+PLQC +E+
Sbjct: 61  MEEATRVMLHVHQRGVGVCGIFSYEVAETKVNQVMDFARQNQHPLQCTLEK 111


>gi|209964988|ref|YP_002297903.1| ATP-dependent Clp protease adaptor protein ClpS,putative
           [Rhodospirillum centenum SW]
 gi|259491250|sp|B6INJ3|CLPS_RHOCS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|209958454|gb|ACI99090.1| ATP-dependent Clp protease adaptor protein ClpS,putative
           [Rhodospirillum centenum SW]
          Length = 108

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 71/90 (78%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
           V+   K + P +Y+VL++ND+YTPMEFV+HVL+ FF K+ E A  IML VH +G+G CGV
Sbjct: 18  VKAKPKTKKPSMYKVLMLNDDYTPMEFVVHVLERFFNKNREEATRIMLHVHRRGVGVCGV 77

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           + YE+AE KV QVM+++RQHQ+PLQC +E+
Sbjct: 78  FTYEVAETKVTQVMDFARQHQHPLQCTLEK 107


>gi|163868096|ref|YP_001609300.1| ATP-dependent Clp protease adaptor protein ClpS [Bartonella
           tribocorum CIP 105476]
 gi|161017747|emb|CAK01305.1| Clp protease adaptor protein [Bartonella tribocorum CIP 105476]
          Length = 123

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 79/109 (72%), Gaps = 4/109 (3%)

Query: 33  NKKGIAEFDNCLDSEV---RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
           N+KG   +D    S V   +  +K++ PKLYRVLL+ND+YTPM+FV+ VL+NFF K  E 
Sbjct: 16  NEKG-KNWDEGRHSAVIIPKARAKLQKPKLYRVLLLNDDYTPMDFVVFVLKNFFKKSFEE 74

Query: 90  AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           A  IML VHH GIGECG Y YE+AEMK+ QV   +RQ+++PLQC+ME K
Sbjct: 75  ATRIMLNVHHNGIGECGTYTYEVAEMKIVQVRECARQNEHPLQCVMEWK 123


>gi|83593445|ref|YP_427197.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodospirillum
           rubrum ATCC 11170]
 gi|83576359|gb|ABC22910.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodospirillum
           rubrum ATCC 11170]
          Length = 137

 Score =  122 bits (305), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 52/91 (57%), Positives = 71/91 (78%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
           V+   K + P +YRVL++ND+YTPMEFV+HVL+ FF K HE A  IML VH +G+G CGV
Sbjct: 47  VKAKPKTKKPSMYRVLMLNDDYTPMEFVVHVLERFFGKTHEEATNIMLHVHQRGVGLCGV 106

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           Y YE+AE KV+QVM+ +R+ Q+PLQC +E++
Sbjct: 107 YTYEVAETKVSQVMDLARRSQHPLQCTLEKE 137


>gi|296533024|ref|ZP_06895672.1| ATP-dependent Clp protease [Roseomonas cervicalis ATCC 49957]
 gi|296266653|gb|EFH12630.1| ATP-dependent Clp protease [Roseomonas cervicalis ATCC 49957]
          Length = 120

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 55/110 (50%), Positives = 75/110 (68%)

Query: 29  DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
           DS  N  G           V+   + R P +Y+VL++ND+YTPMEFV+HVL+ FF K+ E
Sbjct: 11  DSGQNGNGQTGDGAATGVVVKTRPRTRKPAMYKVLMLNDDYTPMEFVVHVLERFFQKNRE 70

Query: 89  TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            A  IML VH +G+G CGVY YE+AE KV QVM+ +RQ+Q+PLQC +E++
Sbjct: 71  EATRIMLHVHRRGVGVCGVYTYEVAETKVTQVMDLARQNQHPLQCTIEKE 120


>gi|148261528|ref|YP_001235655.1| ATP-dependent Clp protease adaptor protein ClpS [Acidiphilium
           cryptum JF-5]
 gi|326405016|ref|YP_004285098.1| ATP-dependent Clp protease adaptor protein ClpS [Acidiphilium
           multivorum AIU301]
 gi|146403209|gb|ABQ31736.1| ATP-dependent Clp protease adaptor protein ClpS [Acidiphilium
           cryptum JF-5]
 gi|325051878|dbj|BAJ82216.1| ATP-dependent Clp protease adaptor protein ClpS [Acidiphilium
           multivorum AIU301]
          Length = 118

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 51/91 (56%), Positives = 70/91 (76%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R  +K R P LY+VL++ND+YTPMEFV+HVL+ FF K  + A+ IML VH +G+G CGV
Sbjct: 28  TRTRTKTRKPSLYKVLMLNDDYTPMEFVVHVLERFFGKSRQEAERIMLHVHRRGVGVCGV 87

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YE+AE KV QVM+ +RQ Q+PLQC +E++
Sbjct: 88  FTYEVAETKVTQVMDLARQSQHPLQCTIEKE 118


>gi|163797886|ref|ZP_02191830.1| ATP-dependent Clp protease adaptor protein clpS [alpha
           proteobacterium BAL199]
 gi|159176848|gb|EDP61416.1| ATP-dependent Clp protease adaptor protein clpS [alpha
           proteobacterium BAL199]
          Length = 108

 Score =  120 bits (302), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 49/90 (54%), Positives = 70/90 (77%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
           V+   K + P +Y+V+++ND+YTPMEFV+H+++ FF K  E A  IML VH +G+G CGV
Sbjct: 18  VKTRPKTKKPSMYKVIMLNDDYTPMEFVVHIIERFFAKSREEATQIMLHVHQRGVGICGV 77

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           Y YE+AE KV QVM+++RQHQ+PLQC +E+
Sbjct: 78  YTYEVAETKVTQVMDFARQHQHPLQCTLEK 107


>gi|85709342|ref|ZP_01040407.1| ATP-dependent Clp protease adaptor protein ClpS [Erythrobacter sp.
           NAP1]
 gi|85688052|gb|EAQ28056.1| ATP-dependent Clp protease adaptor protein ClpS [Erythrobacter sp.
           NAP1]
          Length = 140

 Score =  120 bits (302), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 56/122 (45%), Positives = 83/122 (68%), Gaps = 5/122 (4%)

Query: 20  ALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRV----PKLYRVLLVNDNYTPMEFV 75
           A  + + +AD    K G ++ D   D +V  ++K R     P  Y+VL++ND+YTPMEFV
Sbjct: 19  AAFAAVRLADDDEKKDGGSDTDEG-DGQVVIATKTRTKPKKPSQYKVLMLNDDYTPMEFV 77

Query: 76  IHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIM 135
           + VL+ FF  D E A  +ML VH +G+G CG++ YE+AE KVNQVM+++RQ+Q+PLQC +
Sbjct: 78  VMVLKRFFGMDLEAATRVMLHVHQKGVGVCGIFPYEVAETKVNQVMDFARQNQHPLQCTL 137

Query: 136 EQ 137
           E+
Sbjct: 138 EK 139


>gi|161898748|ref|YP_191042.2| ATP-dependent Clp protease adaptor protein ClpS [Gluconobacter
           oxydans 621H]
          Length = 143

 Score =  120 bits (301), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 71/90 (78%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
           VR  ++ R P +Y+VL++ND+YTPMEFV+HVL+ FF K  + A  IML+VH +G+G CGV
Sbjct: 53  VRPRTRTRKPSMYKVLMLNDDYTPMEFVVHVLERFFAKTRDEATSIMLQVHQRGVGICGV 112

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           + YE+AE KV QVM+ +RQ+Q+PLQC +E+
Sbjct: 113 FTYEVAESKVTQVMDLARQNQHPLQCTIEK 142


>gi|67460154|sp|Q5FTB0|CLPS_GLUOX RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|58001492|gb|AAW60386.1| Hypothetical protein GOX0608 [Gluconobacter oxydans 621H]
          Length = 119

 Score =  120 bits (300), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 71/90 (78%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
           VR  ++ R P +Y+VL++ND+YTPMEFV+HVL+ FF K  + A  IML+VH +G+G CGV
Sbjct: 29  VRPRTRTRKPSMYKVLMLNDDYTPMEFVVHVLERFFAKTRDEATSIMLQVHQRGVGICGV 88

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           + YE+AE KV QVM+ +RQ+Q+PLQC +E+
Sbjct: 89  FTYEVAESKVTQVMDLARQNQHPLQCTIEK 118


>gi|74317254|ref|YP_314994.1| ATP-dependent Clp protease adaptor protein ClpS [Thiobacillus
           denitrificans ATCC 25259]
 gi|74056749|gb|AAZ97189.1| ATP-dependent Clp protease adaptor protein ClpS [Thiobacillus
           denitrificans ATCC 25259]
          Length = 102

 Score =  120 bits (300), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 70/87 (80%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
           ++KV+ P LY+VLL+ND+YTPMEFV+HVL+ FF  D E A  IMLKVH +G+G CGV+  
Sbjct: 15  AAKVKPPPLYKVLLLNDDYTPMEFVVHVLRKFFGIDEERATQIMLKVHTEGVGVCGVFTR 74

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +IA  KV QV++++RQHQ+PLQC ME+
Sbjct: 75  DIAHTKVEQVVDFARQHQHPLQCTMEE 101


>gi|103485996|ref|YP_615557.1| ATP-dependent Clp protease adaptor protein ClpS [Sphingopyxis
           alaskensis RB2256]
 gi|98976073|gb|ABF52224.1| ATP-dependent Clp protease adaptor protein ClpS [Sphingopyxis
           alaskensis RB2256]
          Length = 121

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 70/90 (77%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R  +K + P +Y+VLL+ND+YTPMEFV+ VLQ FF  D E A  +ML VH QG+G CGV
Sbjct: 31  TRTRAKPKKPSMYKVLLLNDDYTPMEFVVMVLQRFFNMDIERATQVMLHVHQQGVGVCGV 90

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           ++YE+AE KVNQVM+ +RQ+Q+PLQC +E+
Sbjct: 91  FSYEVAETKVNQVMDAARQNQHPLQCTLEK 120


>gi|121601730|ref|YP_988887.1| ATP-dependent Clp protease adaptor protein ClpS [Bartonella
           bacilliformis KC583]
 gi|120613907|gb|ABM44508.1| ATP-dependent Clp protease adaptor protein ClpS [Bartonella
           bacilliformis KC583]
          Length = 92

 Score =  119 bits (298), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 71/87 (81%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            K++ PKLYRVLL++D+YTPM+FV+ +L+NFF K+ E A  IML +HH GIGECG Y YE
Sbjct: 6   QKLQKPKLYRVLLLDDDYTPMDFVVFILKNFFKKNFEEATRIMLNIHHNGIGECGTYTYE 65

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           +AEMK+ QVM  +RQ+++PLQC++E K
Sbjct: 66  VAEMKIVQVMECARQNEHPLQCVIEAK 92


>gi|330993783|ref|ZP_08317715.1| ATP-dependent Clp protease adapter protein ClpS [Gluconacetobacter
           sp. SXCC-1]
 gi|329759051|gb|EGG75563.1| ATP-dependent Clp protease adapter protein ClpS [Gluconacetobacter
           sp. SXCC-1]
          Length = 175

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 72/97 (74%)

Query: 41  DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
           D  +D  +    + R P +Y+VL++ND+YTPMEFV+HVL+ FF K+ E A  IML VH +
Sbjct: 78  DGMIDVVIHTRPQTRKPAMYKVLMLNDDYTPMEFVVHVLERFFQKNREEATDIMLHVHKR 137

Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           G+G CGV+ YE+AE KV QVM+ +RQ+Q+PLQC +E+
Sbjct: 138 GVGVCGVFTYEVAETKVTQVMDLARQNQHPLQCTIEK 174


>gi|319408390|emb|CBI82045.1| Clp protease adaptor protein [Bartonella schoenbuchensis R1]
          Length = 119

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/106 (53%), Positives = 77/106 (72%), Gaps = 2/106 (1%)

Query: 33  NKKGIAEFDNCLDSEV--RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
           N+KG    ++  D+ V  +   K + PKLYRVLL+ND+YTPM+FV+ +L++FF K  E  
Sbjct: 14  NEKGKGWSEDKYDTIVIPQVKPKFQKPKLYRVLLLNDDYTPMDFVVFILESFFKKSFEET 73

Query: 91  KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
             IML VH  G+GECGVY YE+AEMKV QVM  +RQ+++PLQC+ME
Sbjct: 74  TRIMLNVHQNGVGECGVYTYEVAEMKVVQVMECARQNEHPLQCVME 119


>gi|296116796|ref|ZP_06835402.1| ATP-dependent Clp protease adaptor protein ClpS [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295976597|gb|EFG83369.1| ATP-dependent Clp protease adaptor protein ClpS [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 134

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 69/90 (76%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
           +R   + R P +Y+VL++ND+YTPMEFV+HVL+ FF K  E A  IML VH +G+G CGV
Sbjct: 44  IRTRPQTRKPAMYKVLMLNDDYTPMEFVVHVLERFFQKSREEATDIMLHVHKRGVGVCGV 103

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           + YE+AE KV QVM+ +RQ+Q+PLQC +E+
Sbjct: 104 FTYEVAETKVTQVMDLARQNQHPLQCTIEK 133


>gi|329114968|ref|ZP_08243723.1| ATP-dependent Clp protease adapter protein ClpS [Acetobacter
           pomorum DM001]
 gi|326695411|gb|EGE47097.1| ATP-dependent Clp protease adapter protein ClpS [Acetobacter
           pomorum DM001]
          Length = 117

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 70/90 (77%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
           VR   K R P +Y+VL++ND+YTPMEFV++VL+ FF K+ E A  IML VH +G+G CGV
Sbjct: 27  VRAKPKTRKPAMYKVLMLNDDYTPMEFVVYVLERFFQKNREEATDIMLNVHRRGVGVCGV 86

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           + YE+AE KV QVM+ +RQ+Q+PLQC +E+
Sbjct: 87  FTYEVAETKVAQVMDLARQNQHPLQCTIEK 116


>gi|288957528|ref|YP_003447869.1| ATP-dependent Clp protease adaptor protein [Azospirillum sp. B510]
 gi|288909836|dbj|BAI71325.1| ATP-dependent Clp protease adaptor protein [Azospirillum sp. B510]
          Length = 108

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 69/90 (76%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
           V+   K + P +Y+VL++ND+YTPMEFV+ VL+ FF K  E A  IML VH +G+G CGV
Sbjct: 18  VKAKPKTKKPSMYKVLMLNDDYTPMEFVVLVLERFFSKSREEATQIMLHVHRRGVGLCGV 77

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           + YE+AE KV QVM+++RQHQ+PLQC +E+
Sbjct: 78  FTYEVAETKVTQVMDFARQHQHPLQCTLEK 107


>gi|315498280|ref|YP_004087084.1| ATP-dependent clp protease adaptor protein clps [Asticcacaulis
           excentricus CB 48]
 gi|315416292|gb|ADU12933.1| ATP-dependent Clp protease adaptor protein ClpS [Asticcacaulis
           excentricus CB 48]
          Length = 132

 Score =  118 bits (296), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/111 (48%), Positives = 74/111 (66%), Gaps = 3/111 (2%)

Query: 30  SRMNKKGIAEFDNCLDSE---VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           +R  K  + + D   ++    +    K   P LYRVL++ND+YTPMEFV++VL+ FF K 
Sbjct: 21  ARAPKAPVTDVDKPANAPFAVIDAKPKAAKPSLYRVLILNDDYTPMEFVVYVLERFFNKS 80

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            E A  IML VH  G+G CGVY YE+AE KV QV++ +R+HQ+PLQC ME+
Sbjct: 81  REDATRIMLHVHQTGVGVCGVYTYEVAETKVAQVVDMARRHQHPLQCTMEK 131


>gi|258541379|ref|YP_003186812.1| Clp protease adaptor protein ClpS [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632457|dbj|BAH98432.1| Clp protease adaptor protein ClpS [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635514|dbj|BAI01483.1| Clp protease adaptor protein ClpS [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638569|dbj|BAI04531.1| Clp protease adaptor protein ClpS [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641623|dbj|BAI07578.1| Clp protease adaptor protein ClpS [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644678|dbj|BAI10626.1| Clp protease adaptor protein ClpS [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647733|dbj|BAI13674.1| Clp protease adaptor protein ClpS [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650786|dbj|BAI16720.1| Clp protease adaptor protein ClpS [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653777|dbj|BAI19704.1| Clp protease adaptor protein ClpS [Acetobacter pasteurianus IFO
           3283-12]
          Length = 125

 Score =  118 bits (296), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 70/90 (77%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
           VR   K R P +Y+VL++ND+YTPMEFV++VL+ FF K+ E A  IML VH +G+G CGV
Sbjct: 35  VRAKPKTRKPAMYKVLMLNDDYTPMEFVVYVLERFFQKNREEATDIMLNVHRRGVGVCGV 94

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           + YE+AE KV QVM+ +RQ+Q+PLQC +E+
Sbjct: 95  FTYEVAETKVAQVMDLARQNQHPLQCTIEK 124


>gi|144898735|emb|CAM75599.1| ATP-dependent Clp protease adaptor protein clpS [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 146

 Score =  118 bits (295), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 72/97 (74%)

Query: 41  DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
           DN     ++   K + P +Y+VL++ND+YTPMEFV+HVL++FF K  E A  IML VH +
Sbjct: 49  DNQTGVVIKTRPKTKKPSMYKVLMLNDDYTPMEFVVHVLEHFFNKSREDATRIMLHVHTR 108

Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           G+G CGVY YE+AE KV QVM+ +RQ+Q+PLQC +E+
Sbjct: 109 GVGICGVYTYEVAETKVTQVMDLARQNQHPLQCTIEK 145


>gi|83951021|ref|ZP_00959754.1| ATP-dependent Clp protease, adaptor protein ClpS [Roseovarius
           nubinhibens ISM]
 gi|83838920|gb|EAP78216.1| ATP-dependent Clp protease, adaptor protein ClpS [Roseovarius
           nubinhibens ISM]
          Length = 114

 Score =  118 bits (295), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/108 (50%), Positives = 75/108 (69%)

Query: 31  RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
           ++N  G  + D  +   V    K + P LY+VLL+ND+YTPMEFV+HVL+ FF   H  A
Sbjct: 7   QLNSSGQDDGDGHISVAVATRPKTKRPPLYKVLLLNDDYTPMEFVVHVLERFFGMTHAEA 66

Query: 91  KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
             IML VH +G+   GV+++EIAE KV QVM+++RQHQ+PLQC ME++
Sbjct: 67  FEIMLTVHKKGVAVVGVFSHEIAETKVAQVMDFARQHQHPLQCTMEKE 114


>gi|91774864|ref|YP_544620.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacillus
           flagellatus KT]
 gi|91708851|gb|ABE48779.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacillus
           flagellatus KT]
          Length = 128

 Score =  118 bits (295), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/109 (50%), Positives = 79/109 (72%), Gaps = 4/109 (3%)

Query: 29  DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
           D RM    I   DN ++   +  + ++ P +Y+V+L+ND+YTPMEFV+ V+Q FF+K+ E
Sbjct: 23  DQRM--ASIKHQDNLIEKTGK--ANIKPPSMYKVILLNDDYTPMEFVVDVMQRFFHKNRE 78

Query: 89  TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            A  IML+VH +G G CGVY + IAE KVNQV++Y+R+HQ+PLQC ME+
Sbjct: 79  QATQIMLQVHTEGAGVCGVYPHGIAETKVNQVISYAREHQHPLQCTMEE 127


>gi|329851348|ref|ZP_08266105.1| ATP-dependent Clp protease adaptor protein ClpS family protein
           [Asticcacaulis biprosthecum C19]
 gi|328840194|gb|EGF89766.1| ATP-dependent Clp protease adaptor protein ClpS family protein
           [Asticcacaulis biprosthecum C19]
          Length = 161

 Score =  118 bits (295), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 67/90 (74%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
           V    K + P LYRVL++ND+YTPMEFV++VL+ FF K  E A  IML VH  G+G CGV
Sbjct: 71  VETKPKPQKPSLYRVLILNDDYTPMEFVVYVLERFFNKSREDATRIMLHVHQTGVGVCGV 130

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           Y YE+AE KV QV++ +R+HQ+PLQC ME+
Sbjct: 131 YTYEVAETKVAQVVDMARRHQHPLQCTMEK 160


>gi|162149242|ref|YP_001603703.1| ATP-dependent Clp protease adaptor protein ClpS [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787819|emb|CAP57417.1| putative ATP-dependent Clp protease adaptor protein clpS
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 146

 Score =  118 bits (295), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 69/90 (76%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
           VR   + R P +Y+VL++ND+YTPMEFV+HVL+ FF K  + A  IML VH +G+G CGV
Sbjct: 56  VRTRPQTRKPAMYKVLMLNDDYTPMEFVVHVLERFFQKSRDEATDIMLHVHKRGVGVCGV 115

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           + YE+AE KV QVM+ +RQ+Q+PLQC +E+
Sbjct: 116 FTYEVAETKVTQVMDLARQNQHPLQCTIEK 145


>gi|46201030|ref|ZP_00055925.2| COG2127: Uncharacterized conserved protein [Magnetospirillum
           magnetotacticum MS-1]
          Length = 110

 Score =  117 bits (294), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 70/91 (76%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
           ++   K + P +Y+VL++ND+YTPMEFV+HVL+ FF K  E A  +ML VH +G+G CGV
Sbjct: 20  IKTRPKTKKPSMYKVLMLNDDYTPMEFVVHVLERFFNKSREDATRVMLNVHTRGVGICGV 79

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           Y YE+AE KV QVM+ +RQ+Q+PLQC +E++
Sbjct: 80  YTYEVAETKVTQVMDLARQNQHPLQCTIEKE 110


>gi|209545021|ref|YP_002277250.1| ATP-dependent Clp protease adaptor protein ClpS [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532698|gb|ACI52635.1| ATP-dependent Clp protease adaptor protein ClpS [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 135

 Score =  117 bits (294), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 69/90 (76%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
           VR   + R P +Y+VL++ND+YTPMEFV+HVL+ FF K  + A  IML VH +G+G CGV
Sbjct: 45  VRTRPQTRKPAMYKVLMLNDDYTPMEFVVHVLERFFQKSRDEATDIMLHVHKRGVGVCGV 104

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           + YE+AE KV QVM+ +RQ+Q+PLQC +E+
Sbjct: 105 FTYEVAETKVTQVMDLARQNQHPLQCTIEK 134


>gi|114799620|ref|YP_759751.1| ATP-dependent Clp protease, adaptor protein ClpS [Hyphomonas
           neptunium ATCC 15444]
 gi|123028220|sp|Q0C3E2|CLPS_HYPNA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|114739794|gb|ABI77919.1| ATP-dependent Clp protease, adaptor protein ClpS [Hyphomonas
           neptunium ATCC 15444]
          Length = 118

 Score =  117 bits (293), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 72/95 (75%), Gaps = 2/95 (2%)

Query: 44  LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIG 103
           L +E R  +K   P LYRVLL+ND+YTPMEFV+ +L+ FF +  E A  IML VH +G+G
Sbjct: 25  LATETRIKTKK--PSLYRVLLLNDDYTPMEFVVFILERFFNRSREQATRIMLHVHQKGVG 82

Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            CGVY YE+AE KV QV++ +R+H++PLQC+ME++
Sbjct: 83  LCGVYTYEVAETKVAQVLDLARRHEHPLQCVMEKE 117


>gi|83310221|ref|YP_420485.1| ATP-dependent Clp protease adaptor protein ClpS [Magnetospirillum
           magneticum AMB-1]
 gi|123542818|sp|Q2W899|CLPS_MAGSA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|82945062|dbj|BAE49926.1| ATP-dependent Clp protease adaptor protein clpS [Magnetospirillum
           magneticum AMB-1]
          Length = 119

 Score =  117 bits (293), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 70/91 (76%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
           ++   K + P +Y+VL++ND+YTPMEFV+HVL+ FF K  E A  +ML VH +G+G CGV
Sbjct: 29  IKTRPKTKKPSMYKVLMLNDDYTPMEFVVHVLERFFNKSREDATRVMLHVHTRGVGICGV 88

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           Y YE+AE KV QVM+ +RQ+Q+PLQC +E++
Sbjct: 89  YTYEVAETKVTQVMDLARQNQHPLQCTIEKE 119


>gi|296446322|ref|ZP_06888268.1| ATP-dependent Clp protease adaptor protein ClpS [Methylosinus
           trichosporium OB3b]
 gi|296256223|gb|EFH03304.1| ATP-dependent Clp protease adaptor protein ClpS [Methylosinus
           trichosporium OB3b]
          Length = 141

 Score =  117 bits (293), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 52/82 (63%), Positives = 66/82 (80%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           P +YRVLL+ND+YT  EFV+ VL+ +F K  E A  IML VH+ G+GECGVY YE+AE K
Sbjct: 60  PNMYRVLLLNDDYTTQEFVVIVLRKYFNKSLEEATRIMLHVHNHGVGECGVYTYEVAETK 119

Query: 117 VNQVMNYSRQHQYPLQCIMEQK 138
           V QVM+Y+R+HQ+PLQCIME+K
Sbjct: 120 VTQVMDYARKHQHPLQCIMEKK 141


>gi|323138622|ref|ZP_08073689.1| ATP-dependent Clp protease adaptor protein ClpS [Methylocystis sp.
           ATCC 49242]
 gi|322396110|gb|EFX98644.1| ATP-dependent Clp protease adaptor protein ClpS [Methylocystis sp.
           ATCC 49242]
          Length = 130

 Score =  117 bits (292), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 68/86 (79%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           + R P +YRVLL+ND+YT  EFV+ VL+ +F K  E A  IML VH+ G+GECGVY YE+
Sbjct: 45  QTRRPNMYRVLLLNDDYTTQEFVVIVLRKYFNKSVEEATRIMLHVHNHGVGECGVYTYEV 104

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQK 138
           AE KV QVM+++R+HQ+PLQCIME+K
Sbjct: 105 AETKVTQVMDFARKHQHPLQCIMEKK 130


>gi|221235488|ref|YP_002517925.1| ATP-dependent Clp protease adaptor protein ClpS [Caulobacter
           crescentus NA1000]
 gi|254763812|sp|B8GZM8|CLPS_CAUCN RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|220964661|gb|ACL96017.1| ATP-dependent Clp protease adaptor protein ClpS [Caulobacter
           crescentus NA1000]
          Length = 109

 Score =  117 bits (292), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 57/113 (50%), Positives = 76/113 (67%), Gaps = 7/113 (6%)

Query: 27  MADSRMNKKGIAEFDNCLDSEV--RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFY 84
           MA+ +   +G     N + S V      K + P LYRVL++ND+YTPMEFV++VL+ FF 
Sbjct: 1   MAERKQGGQG-----NGVGSSVVTEVKPKTQKPSLYRVLILNDDYTPMEFVVYVLERFFN 55

Query: 85  KDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           K  E A  IML VH  G+G CGVY YE+AE KV QV++ +R+HQ+PLQC ME+
Sbjct: 56  KSREDATRIMLHVHQNGVGVCGVYTYEVAETKVAQVIDSARRHQHPLQCTMEK 108


>gi|49474301|ref|YP_032343.1| hypothetical protein BQ07060 [Bartonella quintana str. Toulouse]
 gi|49239805|emb|CAF26195.1| hypothetical protein BQ07060 [Bartonella quintana str. Toulouse]
          Length = 123

 Score =  116 bits (291), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 69/90 (76%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           +  SK++ PKLYRV L ND+YTPM+FV+ VL+NFF K  E A  IML VH  G+GECG+Y
Sbjct: 34  KMRSKLQKPKLYRVFLFNDDYTPMDFVVFVLKNFFKKSFEEATHIMLNVHQNGVGECGIY 93

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           +YE+AEMKV QV   + Q+++PLQC+ME K
Sbjct: 94  SYEVAEMKVIQVRECAHQNEHPLQCVMEWK 123


>gi|240850299|ref|YP_002971692.1| ATP-dependent Clp protease adaptor protein ClpS [Bartonella
           grahamii as4aup]
 gi|240267422|gb|ACS51010.1| ATP-dependent Clp protease adaptor protein ClpS [Bartonella
           grahamii as4aup]
          Length = 110

 Score =  116 bits (291), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 67/87 (77%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           +K+  PKL RV L+ND+YTPM+FV+ VL+NFF K  E A  IML VHH GIGECG Y YE
Sbjct: 24  AKLEKPKLCRVFLLNDDYTPMDFVVFVLKNFFKKSFEEATRIMLNVHHSGIGECGTYTYE 83

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           +AEMK+ QV   +RQ+++PLQC+ME K
Sbjct: 84  VAEMKILQVRECARQNEHPLQCVMEWK 110


>gi|49475405|ref|YP_033446.1| hypothetical protein BH06170 [Bartonella henselae str. Houston-1]
 gi|49238211|emb|CAF27421.1| hypothetical protein BH06170 [Bartonella henselae str. Houston-1]
          Length = 123

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 72/90 (80%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           +  SK++ PKLYRVLL++D+YTPM+FVI VL++FF K+ E A  IML VH  G+GECG+Y
Sbjct: 34  KMRSKLQKPKLYRVLLLDDDYTPMDFVIFVLKSFFKKNFEEAMHIMLSVHQNGVGECGIY 93

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            YE+AEMK+ QV   +RQ+++PLQC+ME K
Sbjct: 94  NYEVAEMKIIQVRECARQNEHPLQCVMEWK 123


>gi|67460273|sp|Q6FZM5|CLPS_BARQU RecName: Full=ATP-dependent Clp protease adapter protein ClpS
          Length = 110

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 69/90 (76%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           +  SK++ PKLYRV L ND+YTPM+FV+ VL+NFF K  E A  IML VH  G+GECG+Y
Sbjct: 21  KMRSKLQKPKLYRVFLFNDDYTPMDFVVFVLKNFFKKSFEEATHIMLNVHQNGVGECGIY 80

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           +YE+AEMKV QV   + Q+++PLQC+ME K
Sbjct: 81  SYEVAEMKVIQVRECAHQNEHPLQCVMEWK 110


>gi|67460279|sp|Q6G5D4|CLPS_BARHE RecName: Full=ATP-dependent Clp protease adapter protein ClpS
          Length = 110

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 72/90 (80%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           +  SK++ PKLYRVLL++D+YTPM+FVI VL++FF K+ E A  IML VH  G+GECG+Y
Sbjct: 21  KMRSKLQKPKLYRVLLLDDDYTPMDFVIFVLKSFFKKNFEEAMHIMLSVHQNGVGECGIY 80

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            YE+AEMK+ QV   +RQ+++PLQC+ME K
Sbjct: 81  NYEVAEMKIIQVRECARQNEHPLQCVMEWK 110


>gi|16126706|ref|NP_421270.1| ATP-dependent Clp protease adaptor protein ClpS [Caulobacter
           crescentus CB15]
 gi|21542323|sp|Q9A5I0|CLPS_CAUCR RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|13424016|gb|AAK24438.1| conserved hypothetical protein [Caulobacter crescentus CB15]
          Length = 119

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/113 (50%), Positives = 76/113 (67%), Gaps = 7/113 (6%)

Query: 27  MADSRMNKKGIAEFDNCLDSEV--RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFY 84
           MA+ +   +G     N + S V      K + P LYRVL++ND+YTPMEFV++VL+ FF 
Sbjct: 11  MAERKQGGQG-----NGVGSSVVTEVKPKTQKPSLYRVLILNDDYTPMEFVVYVLERFFN 65

Query: 85  KDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           K  E A  IML VH  G+G CGVY YE+AE KV QV++ +R+HQ+PLQC ME+
Sbjct: 66  KSREDATRIMLHVHQNGVGVCGVYTYEVAETKVAQVIDSARRHQHPLQCTMEK 118


>gi|295690174|ref|YP_003593867.1| ATP-dependent Clp protease adaptor protein ClpS [Caulobacter segnis
           ATCC 21756]
 gi|295432077|gb|ADG11249.1| ATP-dependent Clp protease adaptor protein ClpS [Caulobacter segnis
           ATCC 21756]
          Length = 109

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/85 (60%), Positives = 66/85 (77%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           K + P LYRVL++ND+YTPMEFV++VL+ FF K  E A  IML VH  G+G CGVY YE+
Sbjct: 24  KTQKPSLYRVLILNDDYTPMEFVVYVLERFFNKSREDATRIMLHVHQNGVGVCGVYTYEV 83

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           AE KV QV++ +R+HQ+PLQC ME+
Sbjct: 84  AETKVAQVIDSARRHQHPLQCTMEK 108


>gi|197104769|ref|YP_002130146.1| hypothetical protein PHZ_c1303 [Phenylobacterium zucineum HLK1]
 gi|238690132|sp|B4R947|CLPS_PHEZH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|196478189|gb|ACG77717.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 109

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/85 (60%), Positives = 66/85 (77%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           K + P +YRVLL+ND+YTPMEFV++VL+ FF K  E A  IML VH  G+G CGVY YE+
Sbjct: 24  KTQKPAMYRVLLLNDDYTPMEFVVYVLEQFFNKSREDATRIMLHVHQHGVGVCGVYTYEV 83

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           AE KV QV++ +R+HQ+PLQC ME+
Sbjct: 84  AETKVAQVVDTARRHQHPLQCTMEK 108


>gi|260432448|ref|ZP_05786419.1| ATP-dependent Clp protease adaptor protein ClpS [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260416276|gb|EEX09535.1| ATP-dependent Clp protease adaptor protein ClpS [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 113

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/112 (48%), Positives = 76/112 (67%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           M  +R    G ++ D      V+   K + P LY+VLL+ND+YTPMEFV+HVL+ FF   
Sbjct: 1   MLTARWMMAGKSDDDGDTSILVQTKPKTKRPPLYKVLLLNDDYTPMEFVVHVLERFFGMS 60

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           H  A  IML VH +G+   GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 61  HAQAFEIMLTVHKKGVAVVGVFSHEIAETKVGQVMDFARRHQHPLQCTMERE 112


>gi|296283029|ref|ZP_06861027.1| ATP-dependent Clp protease adaptor protein ClpS [Citromicrobium
           bathyomarinum JL354]
          Length = 140

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/97 (51%), Positives = 72/97 (74%), Gaps = 4/97 (4%)

Query: 45  DSEVRFSSKVRV----PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
           D  V  ++K R     P  Y+VL++ND+YTPMEFV+ VL+ FF  D E A  +ML+VH +
Sbjct: 43  DPNVGVATKTRAKPKKPSQYKVLMLNDDYTPMEFVVIVLKRFFRMDMEEATRVMLQVHQR 102

Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           G+G CG++ YE+AE KVNQVM+++RQ+Q+PLQC +E+
Sbjct: 103 GVGVCGIFPYEVAETKVNQVMDFARQNQHPLQCTLEK 139


>gi|253999942|ref|YP_003052005.1| ATP-dependent Clp protease adaptor protein ClpS [Methylovorus sp.
           SIP3-4]
 gi|253986621|gb|ACT51478.1| ATP-dependent Clp protease adaptor protein ClpS [Methylovorus sp.
           SIP3-4]
          Length = 103

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/87 (56%), Positives = 69/87 (79%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
           +++ + P +Y+V+L+ND+YTPMEFV+ V+Q FF K  E A  IMLKVH +G G CGVY +
Sbjct: 16  TARPKPPSMYKVILLNDDYTPMEFVVEVIQRFFNKSREQATQIMLKVHTEGAGICGVYPH 75

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +IAE KVNQV+ Y+R++Q+PLQC ME+
Sbjct: 76  DIAETKVNQVLGYAREYQHPLQCAMEE 102


>gi|146276596|ref|YP_001166755.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacter
           sphaeroides ATCC 17025]
 gi|166214741|sp|A4WPY6|CLPS_RHOS5 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|145554837|gb|ABP69450.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 113

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 76/106 (71%), Gaps = 2/106 (1%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
           +K G    D  + ++ R  SK + P LY+VLL+ND+YTPMEFV+HVL+ FF   H  A  
Sbjct: 10  DKTGGTGDDTSILTKTR--SKTQRPPLYKVLLLNDDYTPMEFVVHVLERFFGLSHAQAFE 67

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IML VH +G+   GV+++E+AE KV QVM+++R+HQ+PLQC ME++
Sbjct: 68  IMLTVHKKGLAVVGVFSFEVAETKVAQVMDFARRHQHPLQCTMEKE 113


>gi|149186435|ref|ZP_01864748.1| hypothetical protein ED21_23138 [Erythrobacter sp. SD-21]
 gi|148830024|gb|EDL48462.1| hypothetical protein ED21_23138 [Erythrobacter sp. SD-21]
          Length = 121

 Score =  115 bits (287), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 72/97 (74%), Gaps = 4/97 (4%)

Query: 45  DSEVRFSSKVRV----PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
           D +V  ++K R     P  Y+VLL+ND+YTPMEFV+ VL+ FF  D E A  +ML VH +
Sbjct: 24  DGQVAIATKTRAKPKKPSQYKVLLLNDDYTPMEFVVIVLKRFFRMDMEEATRVMLHVHQK 83

Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           G+G CG++ YE+AE KVNQVM+++RQ+Q+PLQC +E+
Sbjct: 84  GVGVCGIFPYEVAETKVNQVMDFARQNQHPLQCTLEK 120


>gi|224824763|ref|ZP_03697870.1| ATP-dependent Clp protease adaptor protein ClpS [Lutiella
           nitroferrum 2002]
 gi|224603256|gb|EEG09432.1| ATP-dependent Clp protease adaptor protein ClpS [Lutiella
           nitroferrum 2002]
          Length = 102

 Score =  115 bits (287), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 49/94 (52%), Positives = 73/94 (77%), Gaps = 1/94 (1%)

Query: 45  DSEVRFS-SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIG 103
           D+++  S +K R P +Y+VLL+ND+YTPM+FV+ +LQ+FF+K+ E A  IML+VH QG G
Sbjct: 8   DAQLEASRAKTRPPSMYKVLLLNDDYTPMDFVVQILQHFFHKNREQATSIMLQVHTQGRG 67

Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            CGVY  ++A  KV QV+ +++ HQ+PLQC+ME+
Sbjct: 68  VCGVYTKDVAATKVEQVLQFAKAHQHPLQCVMEE 101


>gi|154253238|ref|YP_001414062.1| ATP-dependent Clp protease adaptor protein ClpS [Parvibaculum
           lavamentivorans DS-1]
 gi|171769648|sp|A7HWX2|CLPS_PARL1 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|154157188|gb|ABS64405.1| ATP-dependent Clp protease adaptor protein ClpS [Parvibaculum
           lavamentivorans DS-1]
          Length = 110

 Score =  115 bits (287), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 49/81 (60%), Positives = 65/81 (80%)

Query: 58  KLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKV 117
            LY+VLL+ND+YTPMEFV+HVL+ FF K  + A  IML VH  G+G CG+Y YE+AE KV
Sbjct: 30  SLYKVLLLNDDYTPMEFVVHVLERFFNKGRDEATVIMLHVHQHGVGICGLYTYEVAETKV 89

Query: 118 NQVMNYSRQHQYPLQCIMEQK 138
            QVM++++QHQ+PLQC ME++
Sbjct: 90  TQVMDFAQQHQHPLQCTMERE 110


>gi|77464259|ref|YP_353763.1| ATP-dependent Clp protease adaptor protein clpS [Rhodobacter
           sphaeroides 2.4.1]
 gi|126463101|ref|YP_001044215.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221640143|ref|YP_002526405.1| ATP-dependent Clp protease adapter protein clpS [Rhodobacter
           sphaeroides KD131]
 gi|77388677|gb|ABA79862.1| ATP-dependent Clp protease adaptor protein clpS [Rhodobacter
           sphaeroides 2.4.1]
 gi|126104765|gb|ABN77443.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221160924|gb|ACM01904.1| ATP-dependent Clp protease adapter protein clpS [Rhodobacter
           sphaeroides KD131]
          Length = 106

 Score =  114 bits (286), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 76/106 (71%), Gaps = 2/106 (1%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
           +K G    D  + ++ R  SK + P LY+VLL+ND+YTPMEFV+HVL+ FF   H  A  
Sbjct: 3   DKTGGPGDDTSILTKTR--SKTQRPPLYKVLLLNDDYTPMEFVVHVLERFFGLSHAQAFE 60

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IML VH +G+   GV+++E+AE KV QVM+++R+HQ+PLQC ME++
Sbjct: 61  IMLTVHKKGLAVVGVFSFEVAETKVAQVMDFARRHQHPLQCTMEKE 106


>gi|253997306|ref|YP_003049370.1| ATP-dependent Clp protease adaptor protein ClpS [Methylotenera
           mobilis JLW8]
 gi|253983985|gb|ACT48843.1| ATP-dependent Clp protease adaptor protein ClpS [Methylotenera
           mobilis JLW8]
          Length = 103

 Score =  114 bits (286), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 73/98 (74%), Gaps = 3/98 (3%)

Query: 39  EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           E D  L  EV   +K ++P +++VLL+ND+YTPMEFVI V++ FF K  E A  IMLKVH
Sbjct: 7   ENDIALKPEV---AKPKLPPMFKVLLLNDDYTPMEFVIEVIERFFNKSREQATQIMLKVH 63

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
            +G G CG+Y  +IAE K+NQV++Y+RQ Q+PLQCI+E
Sbjct: 64  TEGAGICGIYPQDIAETKMNQVVSYARQSQHPLQCIVE 101


>gi|167647097|ref|YP_001684760.1| ATP-dependent Clp protease adaptor protein ClpS [Caulobacter sp.
           K31]
 gi|254763813|sp|B0T2L1|CLPS_CAUSK RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|167349527|gb|ABZ72262.1| ATP-dependent Clp protease adaptor protein ClpS [Caulobacter sp.
           K31]
          Length = 109

 Score =  114 bits (286), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/85 (58%), Positives = 66/85 (77%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           K + P LYRVL++ND+YTPMEFV++VL+ FF K  E A  IML VH  G+G CGV+ YE+
Sbjct: 24  KTQKPSLYRVLILNDDYTPMEFVVYVLERFFNKSREDATRIMLHVHQHGVGVCGVFTYEV 83

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           AE KV QV++ +R+HQ+PLQC ME+
Sbjct: 84  AETKVAQVIDSARRHQHPLQCTMEK 108


>gi|241762133|ref|ZP_04760216.1| ATP-dependent Clp protease adaptor protein ClpS [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|260753723|ref|YP_003226616.1| ATP-dependent Clp protease adaptor protein ClpS [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|283856536|ref|YP_163460.2| ATP-dependent Clp protease adaptor protein ClpS [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|67460185|sp|Q5NLR1|CLPS_ZYMMO RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|241373383|gb|EER62983.1| ATP-dependent Clp protease adaptor protein ClpS [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|258553086|gb|ACV76032.1| ATP-dependent Clp protease adaptor protein ClpS [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|283775543|gb|AAV90349.2| ATP-dependent Clp protease adaptor protein ClpS [Zymomonas mobilis
           subsp. mobilis ZM4]
          Length = 107

 Score =  114 bits (286), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/104 (50%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 36  GIAEFDNCLDSEV--RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
           G  +FD   D  V  R + + + P+ Y+VL++ND+YTPMEFV+  LQ FF    E A  +
Sbjct: 3   GDKDFDKDSDVTVITRTTPQTKKPQPYKVLMLNDDYTPMEFVVLCLQRFFRMGIEDATKV 62

Query: 94  MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           ML+VH +G+G CGV+ YE+AE KVNQV++++RQHQ+PLQC +E+
Sbjct: 63  MLQVHQRGVGICGVFTYEVAETKVNQVVDFARQHQHPLQCTLEK 106


>gi|114569835|ref|YP_756515.1| ATP-dependent Clp protease adaptor protein ClpS [Maricaulis maris
           MCS10]
 gi|122316182|sp|Q0AQ60|CLPS_MARMM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|114340297|gb|ABI65577.1| ATP-dependent Clp protease adaptor protein ClpS [Maricaulis maris
           MCS10]
          Length = 109

 Score =  114 bits (286), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 75/112 (66%), Gaps = 3/112 (2%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           M + + +  G+ E    L ++ R ++K   P LYRVLL+ND+YTPMEFV+ VL   F K 
Sbjct: 1   MTERKHDDTGVEE-GTGLATKTRPATKK--PSLYRVLLLNDDYTPMEFVVEVLARIFRKS 57

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            E A  IML VH  G+G CGVY YE+AE KV QVM+ +R+ Q+PLQC ME++
Sbjct: 58  PEDAARIMLHVHQNGVGMCGVYTYEVAETKVAQVMDAARRAQHPLQCTMEKE 109


>gi|114765842|ref|ZP_01444935.1| ATP-dependent Clp protease, adaptor protein ClpS [Pelagibaca
           bermudensis HTCC2601]
 gi|114541841|gb|EAU44878.1| ATP-dependent Clp protease, adaptor protein ClpS [Roseovarius sp.
           HTCC2601]
          Length = 120

 Score =  114 bits (285), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/98 (52%), Positives = 71/98 (72%)

Query: 41  DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
           D   D  ++   K + P LY+VLL+ND+YTPMEFV+HVL+ FF   H  A  IML VH +
Sbjct: 23  DGDADVVLQTKPKTKRPPLYKVLLLNDDYTPMEFVVHVLERFFGMSHAQAFEIMLTVHKK 82

Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           G+   GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 83  GVAVVGVFSHEIAETKVGQVMDFARRHQHPLQCTMEKE 120


>gi|260426993|ref|ZP_05780972.1| ATP-dependent Clp protease adapter protein ClpS [Citreicella sp.
           SE45]
 gi|260421485|gb|EEX14736.1| ATP-dependent Clp protease adapter protein ClpS [Citreicella sp.
           SE45]
          Length = 120

 Score =  114 bits (285), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/94 (54%), Positives = 70/94 (74%)

Query: 45  DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
           D  V+   K + P LY+VLL+ND+YTPMEFV+HVL+ FF   H  A  IML VH +G+  
Sbjct: 27  DVVVQTKPKTKRPPLYKVLLLNDDYTPMEFVVHVLERFFGMSHAQAFEIMLTVHKKGVAV 86

Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 87  VGVFSHEIAETKVGQVMDFARRHQHPLQCTMEKE 120


>gi|295917937|gb|ADG60244.1| ATP-dependent Clp protease adaptor protein ClpS [uncultured
           bacterium]
          Length = 133

 Score =  114 bits (285), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/123 (43%), Positives = 81/123 (65%), Gaps = 5/123 (4%)

Query: 19  LALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRV----PKLYRVLLVNDNYTPMEF 74
           LAL+  + ++D      G    D     +V  +++ R     P  Y+VL++ND+YTPMEF
Sbjct: 11  LALLP-VRLSDEDEGGSGPGNDDGDGQGQVGLATRTRAKPKKPSQYKVLMLNDDYTPMEF 69

Query: 75  VIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCI 134
           V+ VL+ FF  D E A  +ML VH +G+G CG++ YE+AE KV+QVM+++RQ+Q+PLQC 
Sbjct: 70  VVMVLKRFFRMDLEQATRVMLHVHQRGVGVCGIFPYEVAETKVSQVMDFARQNQHPLQCT 129

Query: 135 MEQ 137
           +E+
Sbjct: 130 LEK 132


>gi|329889200|ref|ZP_08267543.1| ATP-dependent Clp protease adaptor protein ClpS family protein
           [Brevundimonas diminuta ATCC 11568]
 gi|328844501|gb|EGF94065.1| ATP-dependent Clp protease adaptor protein ClpS family protein
           [Brevundimonas diminuta ATCC 11568]
          Length = 109

 Score =  114 bits (285), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 66/86 (76%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            K++ P LYRVL++ND+YTPMEFVI+VL+ FF K  E A  IML VH  G+G CGV+ YE
Sbjct: 23  PKLQRPSLYRVLILNDDYTPMEFVIYVLERFFQKSREDATRIMLHVHQHGVGVCGVFTYE 82

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +AE KV QV+  +R+HQ+PLQC ME+
Sbjct: 83  VAETKVAQVVETARRHQHPLQCTMEK 108


>gi|114328313|ref|YP_745470.1| ATP-dependent Clp protease adaptor protein ClpS [Granulibacter
           bethesdensis CGDNIH1]
 gi|114316487|gb|ABI62547.1| ATP-dependent Clp protease adaptor protein ClpS [Granulibacter
           bethesdensis CGDNIH1]
          Length = 178

 Score =  114 bits (285), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 49/85 (57%), Positives = 66/85 (77%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
            R P LY+VL++ND+YTPMEFV+HVL+ FF K  E A  IML VH +G+G CGV+ YE+A
Sbjct: 94  TRKPSLYKVLMLNDDYTPMEFVVHVLERFFQKTREEATQIMLHVHRRGVGVCGVFTYEVA 153

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQK 138
           E KV QVM+ +R +Q+PLQC +E++
Sbjct: 154 ETKVTQVMDLARHNQHPLQCTIEKE 178


>gi|302382575|ref|YP_003818398.1| ATP-dependent Clp protease adaptor protein ClpS [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193203|gb|ADL00775.1| ATP-dependent Clp protease adaptor protein ClpS [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 110

 Score =  114 bits (285), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 66/86 (76%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            K++ P LYRVL++ND+YTPMEFV++VL+ FF K  E A  IML VH  G+G CGV+ YE
Sbjct: 24  PKLQKPSLYRVLILNDDYTPMEFVVYVLERFFQKSREDATRIMLHVHQHGVGVCGVFTYE 83

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +AE KV QV+  +R+HQ+PLQC ME+
Sbjct: 84  VAETKVAQVVETARRHQHPLQCTMEK 109


>gi|213424208|pdb|3DNJ|A Chain A, The Structure Of The Caulobacter Crescentus Clps Protease
           Adaptor Protein In Complex With A N-End Rule Peptide
 gi|213424209|pdb|3DNJ|B Chain B, The Structure Of The Caulobacter Crescentus Clps Protease
           Adaptor Protein In Complex With A N-End Rule Peptide
 gi|228312130|pdb|3G19|A Chain A, The Structure Of The Caulobacter Crescentus Clps Protease
           Adaptor Protein In Complex With Lll Tripeptide
 gi|228312330|pdb|3GQ0|A Chain A, The Structure Of The Caulobacter Crescentus Clps Protease
           Adaptor Protein - Apo Structure With No Peptide
 gi|228312331|pdb|3GQ0|B Chain B, The Structure Of The Caulobacter Crescentus Clps Protease
           Adaptor Protein - Apo Structure With No Peptide
 gi|229597899|pdb|3GQ1|A Chain A, The Structure Of The Caulobacter Crescentus Clps Protease
           Adaptor Protein In Complex With A Wlfvqrdske Decapeptide
 gi|229597900|pdb|3GQ1|B Chain B, The Structure Of The Caulobacter Crescentus Clps Protease
           Adaptor Protein In Complex With A Wlfvqrdske Decapeptide
 gi|229597907|pdb|3GW1|A Chain A, The Structure Of The Caulobacter Crescentus Clps Protease
           Adaptor Protein In Complex With Fgg Tripeptide
 gi|229597908|pdb|3GW1|B Chain B, The Structure Of The Caulobacter Crescentus Clps Protease
           Adaptor Protein In Complex With Fgg Tripeptide
          Length = 85

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 50/81 (61%), Positives = 64/81 (79%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           P LYRVL++ND+YTPMEFV++VL+ FF K  E A  IML VH  G+G CGVY YE+AE K
Sbjct: 4   PSLYRVLILNDDYTPMEFVVYVLERFFNKSREDATRIMLHVHQNGVGVCGVYTYEVAETK 63

Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
           V QV++ +R+HQ+PLQC ME+
Sbjct: 64  VAQVIDSARRHQHPLQCTMEK 84


>gi|297564863|ref|YP_003683835.1| ATP-dependent Clp protease adaptor protein ClpS [Meiothermus
           silvanus DSM 9946]
 gi|296849312|gb|ADH62327.1| ATP-dependent Clp protease adaptor protein ClpS [Meiothermus
           silvanus DSM 9946]
          Length = 100

 Score =  113 bits (283), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 50/94 (53%), Positives = 68/94 (72%)

Query: 45  DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
           D++ +  S+ R P  Y+VLL+ND+YTPM+FV+ VL  FF K    A  IML+VHH+G+G 
Sbjct: 7   DTKTKTQSRTRTPPQYKVLLLNDDYTPMDFVVEVLMRFFRKSELEATRIMLQVHHEGVGV 66

Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           CGVY +EIAE KV+QVM  + +  +PLQCIME +
Sbjct: 67  CGVYPFEIAETKVHQVMEAAAEEGHPLQCIMEPE 100


>gi|254294360|ref|YP_003060383.1| ATP-dependent Clp protease adaptor protein ClpS [Hirschia baltica
           ATCC 49814]
 gi|254042891|gb|ACT59686.1| ATP-dependent Clp protease adaptor protein ClpS [Hirschia baltica
           ATCC 49814]
          Length = 109

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 69/91 (75%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R  +K + P LYRVL++ND++TPMEFV+ +L++FF K  E A  +ML VH+ G+G CGV
Sbjct: 18  TRTETKTKRPSLYRVLILNDDFTPMEFVVLILEHFFNKTREEATKVMLHVHNTGVGVCGV 77

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YE+AE KV QVM+ +R+ ++PLQC ME++
Sbjct: 78  FTYEVAETKVAQVMDLARRSEHPLQCTMERE 108


>gi|85374864|ref|YP_458926.1| hypothetical protein ELI_10185 [Erythrobacter litoralis HTCC2594]
 gi|84787947|gb|ABC64129.1| hypothetical protein ELI_10185 [Erythrobacter litoralis HTCC2594]
          Length = 127

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 47/90 (52%), Positives = 69/90 (76%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            +  +K + P  Y+VL++ND+YTPMEFV+ VL+ FF  D E A  +ML VH +G+G CG+
Sbjct: 37  TKTRAKPKKPSQYKVLMLNDDYTPMEFVVMVLKRFFKMDLEQATRVMLHVHQKGVGVCGI 96

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           + YE+AE KVNQVM+++RQ+Q+PLQC +E+
Sbjct: 97  FPYEVAETKVNQVMDFARQNQHPLQCTLEK 126


>gi|87198523|ref|YP_495780.1| ATP-dependent Clp protease adaptor protein ClpS [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134204|gb|ABD24946.1| ATP-dependent Clp protease adaptor protein ClpS [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 126

 Score =  112 bits (280), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/97 (50%), Positives = 72/97 (74%), Gaps = 4/97 (4%)

Query: 45  DSEVRFSSKVRV----PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
           D ++  ++K R     P  ++VL++ND+YTPMEFV+ VL+ FF  D E A  +ML VH +
Sbjct: 29  DEQIGIATKTRARPKKPSQFKVLMLNDDYTPMEFVVMVLKRFFNMDLEQATRVMLHVHQR 88

Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           G+G CG++ YEIAE KVNQVM+++RQ+Q+PLQC +E+
Sbjct: 89  GVGVCGIFPYEIAETKVNQVMDFARQNQHPLQCTLEK 125


>gi|84685218|ref|ZP_01013117.1| ATP-dependent Clp protease adaptor protein clpS [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84666950|gb|EAQ13421.1| ATP-dependent Clp protease adaptor protein clpS [Rhodobacterales
           bacterium HTCC2654]
          Length = 118

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/91 (56%), Positives = 69/91 (75%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
           VR  +K + P LY+VLL+ND++TPMEFV+ VL+ FF  +H  A  IML VH +G+   GV
Sbjct: 28  VRPKAKSKRPPLYKVLLINDDFTPMEFVVMVLERFFSMNHAQAFEIMLTVHKKGLAVVGV 87

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           ++YEIAE KVNQVM  +RQ+Q+PLQC ME++
Sbjct: 88  FSYEIAETKVNQVMEMARQYQHPLQCTMERE 118


>gi|126732062|ref|ZP_01747864.1| ATP-dependent Clp protease adaptor protein ClpS [Sagittula stellata
           E-37]
 gi|126707351|gb|EBA06415.1| ATP-dependent Clp protease adaptor protein ClpS [Sagittula stellata
           E-37]
          Length = 116

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 68/91 (74%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            +   K + P LY+VLL+ND+YTPMEFV+HVL+ FF   H  A  +ML VH +G+   GV
Sbjct: 26  TKTKPKTKRPPLYKVLLLNDDYTPMEFVVHVLERFFGMTHAQAFEVMLTVHKKGVAVVGV 85

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           +++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 86  FSHEIAETKVGQVMDFARRHQHPLQCTMEKE 116


>gi|254509526|ref|ZP_05121593.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacteraceae
           bacterium KLH11]
 gi|221533237|gb|EEE36225.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacteraceae
           bacterium KLH11]
          Length = 113

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/91 (54%), Positives = 69/91 (75%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
           V+   K + P LY+VLL+ND+YTPMEFV+HVL+ FF   H  A  IML VH +G+   GV
Sbjct: 22  VQTRPKTQRPPLYKVLLLNDDYTPMEFVVHVLERFFGMTHAQAFEIMLTVHKKGVAVVGV 81

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           +++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 82  FSHEIAETKVGQVMDFARRHQHPLQCTMERE 112


>gi|326388617|ref|ZP_08210210.1| ATP-dependent Clp protease adaptor protein ClpS [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206868|gb|EGD57692.1| ATP-dependent Clp protease adaptor protein ClpS [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 118

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/95 (51%), Positives = 73/95 (76%), Gaps = 2/95 (2%)

Query: 45  DSEVRFSSKVRV--PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
           D  V  +++ R   P ++RVL++ND+YTPMEFV+ VL+ FF+ D E A  +ML VH +G+
Sbjct: 23  DGLVGIATRARPKKPSMFRVLMLNDDYTPMEFVVMVLKRFFHMDLEQATRVMLHVHQRGV 82

Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           G CGV+ YEIAE KVNQVM++++Q+Q+PL+C +E+
Sbjct: 83  GVCGVFPYEIAETKVNQVMDFAKQNQHPLRCTLEK 117


>gi|260574204|ref|ZP_05842209.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacter sp.
           SW2]
 gi|259023670|gb|EEW26961.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacter sp.
           SW2]
          Length = 117

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/111 (45%), Positives = 76/111 (68%), Gaps = 2/111 (1%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           M+    +K G  E D    +  +  ++   P LY+VLL+ND+YTPMEFV+H+L+ FF  +
Sbjct: 8   MSGRMSDKPGGTEGDAS--TLTKTHTRTERPPLYKVLLLNDDYTPMEFVVHILERFFGLN 65

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           H  A  IML VH +G+   GV+++E+AE KV QVM+++R+HQ+PLQC ME+
Sbjct: 66  HAQAFEIMLTVHKKGLAVVGVFSFEVAETKVAQVMDFARRHQHPLQCTMEK 116


>gi|254486976|ref|ZP_05100181.1| ATP-dependent Clp protease adaptor protein ClpS [Roseobacter sp.
           GAI101]
 gi|214043845|gb|EEB84483.1| ATP-dependent Clp protease adaptor protein ClpS [Roseobacter sp.
           GAI101]
          Length = 113

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/98 (50%), Positives = 72/98 (73%)

Query: 41  DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
           D+  D   +   K + P LY+V+L+ND++TPMEFV+HVL+ FF  +H  A  IML VH +
Sbjct: 15  DDETDLLTKTKPKTKRPPLYKVMLLNDDFTPMEFVVHVLERFFGLNHAQAFEIMLTVHKK 74

Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           G+   GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 75  GLAVVGVFSHEIAETKVAQVMDFARRHQHPLQCTMEKE 112


>gi|294676717|ref|YP_003577332.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacter
           capsulatus SB 1003]
 gi|294475537|gb|ADE84925.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacter
           capsulatus SB 1003]
          Length = 117

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 70/91 (76%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
           V+ + +   P +Y+V+L+ND+YTPMEFV+H+L+ FF   H  A  IML VH +G+   GV
Sbjct: 27  VKTAPRTARPPMYKVMLLNDDYTPMEFVVHILERFFGMTHAQAFEIMLTVHKKGLAVVGV 86

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           Y++E+AE KV+QVM++SR+HQ+PLQC ME++
Sbjct: 87  YSFEVAETKVSQVMDFSRRHQHPLQCTMEKE 117


>gi|228312133|pdb|3G1B|A Chain A, The Structure Of The M53a Mutant Of Caulobacter Crescentus
           Clps Protease Adaptor Protein In Complex With Wlfvqrdske
           Peptide
 gi|228312134|pdb|3G1B|B Chain B, The Structure Of The M53a Mutant Of Caulobacter Crescentus
           Clps Protease Adaptor Protein In Complex With Wlfvqrdske
           Peptide
 gi|290789973|pdb|3G3P|A Chain A, The Structure Of The M53a Mutant Of The Caulobacter
           Crescentus Clps In Complex With A Peptide Containing An
           Amino-Terminal Norleucine Residue
 gi|290789974|pdb|3G3P|B Chain B, The Structure Of The M53a Mutant Of The Caulobacter
           Crescentus Clps In Complex With A Peptide Containing An
           Amino-Terminal Norleucine Residue
          Length = 85

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/81 (60%), Positives = 63/81 (77%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           P LYRVL++ND+YTP EFV++VL+ FF K  E A  IML VH  G+G CGVY YE+AE K
Sbjct: 4   PSLYRVLILNDDYTPAEFVVYVLERFFNKSREDATRIMLHVHQNGVGVCGVYTYEVAETK 63

Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
           V QV++ +R+HQ+PLQC ME+
Sbjct: 64  VAQVIDSARRHQHPLQCTMEK 84


>gi|110678604|ref|YP_681611.1| ATP-dependent Clp protease, putative [Roseobacter denitrificans OCh
           114]
 gi|123362148|sp|Q16AR8|CLPS_ROSDO RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|109454720|gb|ABG30925.1| ATP-dependent Clp protease, putative [Roseobacter denitrificans OCh
           114]
          Length = 113

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 48/87 (55%), Positives = 68/87 (78%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            K + P LY+VLL+ND++TPMEFV+HVL+ FF  +H  A  IML VH +G+   GV+++E
Sbjct: 26  PKTKRPPLYKVLLLNDDFTPMEFVVHVLERFFGLNHAQAFEIMLTVHKKGVAVVGVFSHE 85

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 86  IAETKVAQVMDFARRHQHPLQCTMEKE 112


>gi|163733946|ref|ZP_02141388.1| ATP-dependent Clp protease, putative [Roseobacter litoralis Och
           149]
 gi|161393057|gb|EDQ17384.1| ATP-dependent Clp protease, putative [Roseobacter litoralis Och
           149]
          Length = 113

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 48/87 (55%), Positives = 68/87 (78%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            K + P LY+VLL+ND++TPMEFV+HVL+ FF  +H  A  IML VH +G+   GV+++E
Sbjct: 26  PKTKRPPLYKVLLLNDDFTPMEFVVHVLERFFGLNHAQAFEIMLTVHKKGVAVVGVFSHE 85

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 86  IAETKVAQVMDFARRHQHPLQCTMEKE 112


>gi|53718539|ref|YP_107525.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei K96243]
 gi|53725847|ref|YP_103843.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           mallei ATCC 23344]
 gi|67642115|ref|ZP_00440876.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           mallei GB8 horse 4]
 gi|76810861|ref|YP_332526.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei 1710b]
 gi|121600243|ref|YP_991923.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           mallei SAVP1]
 gi|124384404|ref|YP_001027038.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           mallei NCTC 10229]
 gi|126440545|ref|YP_001058010.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei 668]
 gi|126448935|ref|YP_001081687.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           mallei NCTC 10247]
 gi|126455350|ref|YP_001065244.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei 1106a]
 gi|134281101|ref|ZP_01767810.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei 305]
 gi|167003875|ref|ZP_02269654.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           mallei PRL-20]
 gi|167718445|ref|ZP_02401681.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei DM98]
 gi|167737495|ref|ZP_02410269.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei 14]
 gi|167814613|ref|ZP_02446293.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei 91]
 gi|167823083|ref|ZP_02454554.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei 9]
 gi|167844644|ref|ZP_02470152.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei B7210]
 gi|167893175|ref|ZP_02480577.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei 7894]
 gi|167901629|ref|ZP_02488834.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei NCTC 13177]
 gi|167909878|ref|ZP_02496969.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei 112]
 gi|167917901|ref|ZP_02504992.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei BCC215]
 gi|217420084|ref|ZP_03451590.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei 576]
 gi|226194397|ref|ZP_03789995.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei Pakistan 9]
 gi|237811161|ref|YP_002895612.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei MSHR346]
 gi|242318006|ref|ZP_04817022.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei 1106b]
 gi|254178824|ref|ZP_04885478.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           mallei ATCC 10399]
 gi|254181505|ref|ZP_04888102.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei 1655]
 gi|254196779|ref|ZP_04903203.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei S13]
 gi|254202547|ref|ZP_04908910.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           mallei FMH]
 gi|254207884|ref|ZP_04914234.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           mallei JHU]
 gi|254261197|ref|ZP_04952251.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei 1710a]
 gi|254296418|ref|ZP_04963875.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei 406e]
 gi|254298242|ref|ZP_04965694.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei 406e]
 gi|67460237|sp|Q62HH7|CLPS_BURMA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|67460244|sp|Q63WJ1|CLPS_BURPS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|123600017|sp|Q3JV77|CLPS_BURP1 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|158513522|sp|A3NSC3|CLPS_BURP0 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|166214726|sp|A3MN51|CLPS_BURM7 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|166214727|sp|A2S519|CLPS_BURM9 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|166214728|sp|A1V120|CLPS_BURMS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|166214729|sp|A3N6N9|CLPS_BURP6 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|52208953|emb|CAH34892.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
 gi|52429270|gb|AAU49863.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           mallei ATCC 23344]
 gi|76580314|gb|ABA49789.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei 1710b]
 gi|121229053|gb|ABM51571.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           mallei SAVP1]
 gi|124292424|gb|ABN01693.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           mallei NCTC 10229]
 gi|126220038|gb|ABN83544.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei 668]
 gi|126228992|gb|ABN92532.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei 1106a]
 gi|126241805|gb|ABO04898.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           mallei NCTC 10247]
 gi|134247407|gb|EBA47492.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei 305]
 gi|147746794|gb|EDK53871.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           mallei FMH]
 gi|147751778|gb|EDK58845.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           mallei JHU]
 gi|157806177|gb|EDO83347.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei 406e]
 gi|157808080|gb|EDO85250.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei 406e]
 gi|160694738|gb|EDP84746.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           mallei ATCC 10399]
 gi|169653522|gb|EDS86215.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei S13]
 gi|184212043|gb|EDU09086.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei 1655]
 gi|217397388|gb|EEC37404.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei 576]
 gi|225933482|gb|EEH29471.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei Pakistan 9]
 gi|237503292|gb|ACQ95610.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei MSHR346]
 gi|238523195|gb|EEP86635.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           mallei GB8 horse 4]
 gi|242141245|gb|EES27647.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei 1106b]
 gi|243060669|gb|EES42855.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           mallei PRL-20]
 gi|254219886|gb|EET09270.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           pseudomallei 1710a]
          Length = 104

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 70/95 (73%), Gaps = 2/95 (2%)

Query: 45  DSEV--RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
           DS V  R   K++ P +Y+V+L+ND++TPMEFV+ V+Q +F KD ETA  IMLKVH +G 
Sbjct: 9   DSSVLERKEQKLKPPSMYKVVLLNDDFTPMEFVVMVVQEYFKKDRETATQIMLKVHREGR 68

Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           G CGVY  +IA  KV QV+ ++RQ  +PLQC+ME+
Sbjct: 69  GVCGVYTRDIASTKVEQVVTHARQAGHPLQCVMEE 103


>gi|325526418|gb|EGD04006.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia sp.
           TJI49]
          Length = 104

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 70/95 (73%), Gaps = 2/95 (2%)

Query: 45  DSEV--RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
           DS V  R   K++ P +Y+V+L+ND++TPMEFV+ V+Q +F KD ETA  IMLKVH +G 
Sbjct: 9   DSTVLERKEQKLKPPSMYKVVLLNDDFTPMEFVVMVVQEYFKKDRETATQIMLKVHREGR 68

Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           G CGVY  +IA  KV QV+ ++RQ  +PLQC+ME+
Sbjct: 69  GVCGVYTRDIASTKVEQVVTHARQAGHPLQCVMEE 103


>gi|84500364|ref|ZP_00998613.1| ATP-dependent Clp protease, adaptor protein ClpS [Oceanicola
           batsensis HTCC2597]
 gi|84391317|gb|EAQ03649.1| ATP-dependent Clp protease, adaptor protein ClpS [Oceanicola
           batsensis HTCC2597]
          Length = 121

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 49/87 (56%), Positives = 67/87 (77%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            K + P LY+VLL+ND+YTPMEFV+ VL+ FF  +H  A  IML VH +G+   GV+++E
Sbjct: 35  PKTKRPPLYKVLLLNDDYTPMEFVVAVLERFFGMNHAQAFEIMLTVHKKGVAVVGVFSHE 94

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IAE KV QVM+++RQHQ+PLQC ME++
Sbjct: 95  IAETKVAQVMDFARQHQHPLQCTMEKE 121


>gi|330818077|ref|YP_004361782.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           gladioli BSR3]
 gi|327370470|gb|AEA61826.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           gladioli BSR3]
          Length = 104

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 48/89 (53%), Positives = 67/89 (75%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R   K++ P +Y+V+L+ND++TPMEFV+ V+Q +F KD ETA  IMLKVH +G G CGVY
Sbjct: 15  RSEQKLKPPSMYKVVLLNDDFTPMEFVVMVVQEYFKKDRETATQIMLKVHREGRGVCGVY 74

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             +IA  KV QV+ ++RQ  +PLQC+ME+
Sbjct: 75  TRDIASTKVEQVVTHARQAGHPLQCVMEE 103


>gi|78067320|ref|YP_370089.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia sp.
           383]
 gi|107023457|ref|YP_621784.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           cenocepacia AU 1054]
 gi|115352618|ref|YP_774457.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           ambifaria AMMD]
 gi|116690539|ref|YP_836162.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           cenocepacia HI2424]
 gi|134296692|ref|YP_001120427.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           vietnamiensis G4]
 gi|161523956|ref|YP_001578968.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           multivorans ATCC 17616]
 gi|167585699|ref|ZP_02378087.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           ubonensis Bu]
 gi|170697705|ref|ZP_02888793.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           ambifaria IOP40-10]
 gi|170733880|ref|YP_001765827.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           cenocepacia MC0-3]
 gi|171319748|ref|ZP_02908836.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           ambifaria MEX-5]
 gi|172061479|ref|YP_001809131.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           ambifaria MC40-6]
 gi|189351283|ref|YP_001946911.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           multivorans ATCC 17616]
 gi|206561069|ref|YP_002231834.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           cenocepacia J2315]
 gi|221199250|ref|ZP_03572294.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           multivorans CGD2M]
 gi|221205848|ref|ZP_03578863.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           multivorans CGD2]
 gi|221211472|ref|ZP_03584451.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           multivorans CGD1]
 gi|254247420|ref|ZP_04940741.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           cenocepacia PC184]
 gi|254251618|ref|ZP_04944936.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           dolosa AUO158]
 gi|122322413|sp|Q0BCK0|CLPS_BURCM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|123371357|sp|Q1BU94|CLPS_BURCA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|123567808|sp|Q39DM1|CLPS_BURS3 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|166214725|sp|A0K9U2|CLPS_BURCH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|166214730|sp|A4JH39|CLPS_BURVG RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238687030|sp|A9AGM9|CLPS_BURM1 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238688602|sp|B1JXD0|CLPS_BURCC RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238692854|sp|B1YVB1|CLPS_BURA4 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238693085|sp|B4E904|CLPS_BURCJ RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|77968065|gb|ABB09445.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia sp.
           383]
 gi|105893646|gb|ABF76811.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           cenocepacia AU 1054]
 gi|115282606|gb|ABI88123.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           ambifaria AMMD]
 gi|116648628|gb|ABK09269.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           cenocepacia HI2424]
 gi|124872196|gb|EAY63912.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           cenocepacia PC184]
 gi|124894227|gb|EAY68107.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           dolosa AUO158]
 gi|134139849|gb|ABO55592.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           vietnamiensis G4]
 gi|160341385|gb|ABX14471.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           multivorans ATCC 17616]
 gi|169817122|gb|ACA91705.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           cenocepacia MC0-3]
 gi|170137453|gb|EDT05693.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           ambifaria IOP40-10]
 gi|171095020|gb|EDT40043.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           ambifaria MEX-5]
 gi|171993996|gb|ACB64915.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           ambifaria MC40-6]
 gi|189335305|dbj|BAG44375.1| ATP-dependent Clp protease adaptor protein [Burkholderia
           multivorans ATCC 17616]
 gi|198037111|emb|CAR53032.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           cenocepacia J2315]
 gi|221168833|gb|EEE01301.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           multivorans CGD1]
 gi|221174686|gb|EEE07118.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           multivorans CGD2]
 gi|221180535|gb|EEE12938.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           multivorans CGD2M]
          Length = 104

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 70/95 (73%), Gaps = 2/95 (2%)

Query: 45  DSEV--RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
           DS V  R   K++ P +Y+V+L+ND++TPMEFV+ V+Q +F KD ETA  IMLKVH +G 
Sbjct: 9   DSTVLERKQQKLKPPSMYKVVLLNDDFTPMEFVVMVVQEYFKKDRETATQIMLKVHREGR 68

Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           G CGVY  +IA  KV QV+ ++RQ  +PLQC+ME+
Sbjct: 69  GVCGVYTRDIASTKVEQVVTHARQAGHPLQCVMEE 103


>gi|83945502|ref|ZP_00957849.1| ATP-dependent Clp protease adaptor protein ClpS [Oceanicaulis
           alexandrii HTCC2633]
 gi|83851078|gb|EAP88936.1| ATP-dependent Clp protease adaptor protein ClpS [Oceanicaulis
           alexandrii HTCC2633]
          Length = 108

 Score =  110 bits (275), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 49/90 (54%), Positives = 66/90 (73%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
           V+  ++ + P +Y+VLL+ND+YTPMEFVI VL   F+K  E A  IML VH  G+G CGV
Sbjct: 18  VKPRARTKRPSMYKVLLLNDDYTPMEFVIEVLVRIFHKGQEDATRIMLHVHQHGVGVCGV 77

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           + YE+AE KV QVM+ +R+ Q+PLQC ME+
Sbjct: 78  FTYEVAETKVAQVMDAARRAQHPLQCTMEK 107


>gi|126031981|gb|ABN71557.1| putative ATP-dependent Clp protease adaptor protein ClpS
           [uncultured bacterium]
          Length = 131

 Score =  110 bits (275), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 67/86 (77%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           +K + P  ++VL++ND+YTPMEFV+  L+ FF  D E A  +ML VH +G+G CG++ YE
Sbjct: 45  TKPKKPSQFKVLMLNDDYTPMEFVVMCLKRFFSMDLEQATRVMLHVHQRGVGVCGIFPYE 104

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           IAE KVNQVM+++RQ+Q+PLQC +E+
Sbjct: 105 IAETKVNQVMDFARQNQHPLQCTLEK 130


>gi|149913907|ref|ZP_01902439.1| ATP-dependent Clp protease, putative [Roseobacter sp. AzwK-3b]
 gi|149812191|gb|EDM72022.1| ATP-dependent Clp protease, putative [Roseobacter sp. AzwK-3b]
          Length = 107

 Score =  110 bits (275), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 70/91 (76%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
           V+  +K + P LY+VLL+ND+YTPMEFV+ VL+ FF  +H  A  +ML VH +G+   GV
Sbjct: 17  VKTRAKTKRPPLYKVLLLNDDYTPMEFVVAVLERFFGMNHAQAFEVMLTVHKKGVAVVGV 76

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           +++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 77  FSHEIAETKVAQVMDFARRHQHPLQCTMEKE 107


>gi|56698476|ref|YP_168851.1| ATP-dependent Clp protease, adaptor protein ClpS [Ruegeria pomeroyi
           DSS-3]
 gi|67460174|sp|Q5LMA7|CLPS_SILPO RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|56680213|gb|AAV96879.1| ATP-dependent Clp protease, adaptor protein ClpS [Ruegeria pomeroyi
           DSS-3]
          Length = 113

 Score =  110 bits (274), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 50/96 (52%), Positives = 72/96 (75%), Gaps = 2/96 (2%)

Query: 45  DSEVRFSSKVRV--PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
           D+ V   ++ R   P LY+VLL+ND+YTPMEFV+HVL+ FF  +H  A  IML VH +G+
Sbjct: 17  DASVLLQTRPRTKRPPLYKVLLLNDDYTPMEFVVHVLERFFGMNHAQAFEIMLTVHKKGV 76

Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
              GV+++EIAE KV+ VM+++R+HQ+PLQC ME++
Sbjct: 77  AVVGVFSHEIAETKVSLVMDFARRHQHPLQCTMEKE 112


>gi|167835724|ref|ZP_02462607.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           thailandensis MSMB43]
          Length = 104

 Score =  110 bits (274), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 70/95 (73%), Gaps = 2/95 (2%)

Query: 45  DSEV--RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
           DS V  R   K++ P +Y+V+L+ND++TPMEFV+ ++Q +F KD ETA  IMLKVH +G 
Sbjct: 9   DSTVLERKEQKLKPPSMYKVVLLNDDFTPMEFVVMIVQEYFRKDRETATQIMLKVHREGR 68

Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           G CGVY  +IA  KV QV+ ++RQ  +PLQC+ME+
Sbjct: 69  GVCGVYTRDIASTKVEQVVTHARQAGHPLQCVMEE 103


>gi|118594453|ref|ZP_01551800.1| ATP-dependent Clp protease adaptor protein ClpS [Methylophilales
           bacterium HTCC2181]
 gi|118440231|gb|EAV46858.1| ATP-dependent Clp protease adaptor protein ClpS [Methylophilales
           bacterium HTCC2181]
          Length = 103

 Score =  110 bits (274), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 68/86 (79%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           +K ++P LY+V+++ND+YTPMEFV+  +Q  F K H+ A  IMLK+H +GIG CG++  E
Sbjct: 17  TKPKLPSLYKVIILNDDYTPMEFVVFSIQKVFQKSHDEATRIMLKIHTEGIGVCGMFPLE 76

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           IAE K+ QV+N +++HQ+PLQCI+E+
Sbjct: 77  IAETKMKQVLNLAKEHQHPLQCIIEK 102


>gi|119944513|ref|YP_942193.1| ATP-dependent Clp protease adaptor protein ClpS [Psychromonas
           ingrahamii 37]
 gi|119863117|gb|ABM02594.1| ATP-dependent Clp protease adaptor protein ClpS [Psychromonas
           ingrahamii 37]
          Length = 108

 Score =  110 bits (274), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 76/107 (71%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
           M+ K   +  N  D+  +  +K+R P +Y VLL ND+YTPM+FVI VLQ FF  D++ A 
Sbjct: 1   MSDKKAPKTVNKSDTIEKVETKLRPPSMYNVLLHNDDYTPMDFVIDVLQQFFRLDNQKAT 60

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            +ML VH++ +G CG ++ EIAE KV QVMNY+RQ+++PL+C ME++
Sbjct: 61  EVMLNVHYKEVGICGTFSAEIAETKVMQVMNYARQNEHPLRCSMEKE 107


>gi|83721401|ref|YP_441318.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           thailandensis E264]
 gi|167561846|ref|ZP_02354762.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           oklahomensis EO147]
 gi|167569069|ref|ZP_02361943.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           oklahomensis C6786]
 gi|167580102|ref|ZP_02372976.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           thailandensis TXDOH]
 gi|167618167|ref|ZP_02386798.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           thailandensis Bt4]
 gi|257140007|ref|ZP_05588269.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           thailandensis E264]
 gi|123537862|sp|Q2T0I1|CLPS_BURTA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|83655226|gb|ABC39289.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           thailandensis E264]
          Length = 104

 Score =  110 bits (274), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 70/95 (73%), Gaps = 2/95 (2%)

Query: 45  DSEV--RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
           DS V  R   K++ P +Y+V+L+ND++TPMEFV+ ++Q +F KD ETA  IMLKVH +G 
Sbjct: 9   DSTVLERKEQKLKPPSMYKVVLLNDDFTPMEFVVMIVQEYFKKDRETATQIMLKVHREGR 68

Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           G CGVY  +IA  KV QV+ ++RQ  +PLQC+ME+
Sbjct: 69  GVCGVYTRDIASTKVEQVVTHARQAGHPLQCVMEE 103


>gi|71908707|ref|YP_286294.1| ATP-dependent Clp protease adaptor protein ClpS [Dechloromonas
           aromatica RCB]
 gi|123626787|sp|Q47BF7|CLPS_DECAR RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|71848328|gb|AAZ47824.1| ATP-dependent Clp protease adaptor protein ClpS [Dechloromonas
           aromatica RCB]
          Length = 102

 Score =  110 bits (274), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 66/86 (76%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           S++  PK+Y+V+L+ND+YTPM+FVI VLQ FF  D E A  IMLKVH++G G CGV+  +
Sbjct: 16  SRLGPPKMYKVVLLNDDYTPMDFVITVLQRFFSLDTEQATRIMLKVHNEGRGVCGVFPRD 75

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           IA  KV QV  ++RQHQ+PL CIME+
Sbjct: 76  IAATKVEQVSAFARQHQHPLACIMEE 101


>gi|89069767|ref|ZP_01157103.1| ATP-dependent Clp protease adaptor protein clpS [Oceanicola
           granulosus HTCC2516]
 gi|89044713|gb|EAR50824.1| ATP-dependent Clp protease adaptor protein clpS [Oceanicola
           granulosus HTCC2516]
          Length = 113

 Score =  110 bits (274), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 73/100 (73%), Gaps = 2/100 (2%)

Query: 41  DNCLDSEVRFSS--KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           D   D+ V+  +  K + P LY+VL++ND+YTPMEFV+HVL+ FF   H  A  +ML VH
Sbjct: 14  DGGTDAGVKVETRPKTKRPPLYKVLILNDDYTPMEFVVHVLERFFGLSHAQAFDLMLTVH 73

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            +G+   GV+++EIAE KV QVM+++++HQ+PLQC ME++
Sbjct: 74  KKGLAVVGVFSFEIAETKVAQVMDFAQRHQHPLQCTMEKE 113


>gi|119897424|ref|YP_932637.1| ATP-dependent Clp protease adaptor protein ClpS [Azoarcus sp. BH72]
 gi|166214724|sp|A1K4J5|CLPS_AZOSB RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|119669837|emb|CAL93750.1| ClpS protein [Azoarcus sp. BH72]
          Length = 102

 Score =  110 bits (274), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 67/86 (77%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           ++ R P LY+VLL+ND++TPM+FVI VLQ +F  D E A  +ML+VH +G+G CGV+  +
Sbjct: 16  TRTRPPPLYKVLLLNDDFTPMDFVIVVLQKYFSMDRERATRVMLQVHREGMGVCGVFPRD 75

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           IA  KV QV++++RQHQ+PL C+ME+
Sbjct: 76  IASTKVEQVVSFARQHQHPLACVMEE 101


>gi|148553784|ref|YP_001261366.1| ATP-dependent Clp protease adaptor protein ClpS [Sphingomonas
           wittichii RW1]
 gi|148498974|gb|ABQ67228.1| ATP-dependent Clp protease adaptor protein ClpS [Sphingomonas
           wittichii RW1]
          Length = 131

 Score =  110 bits (274), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 78/120 (65%)

Query: 18  ILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIH 77
           I++  +F         +K   +    L    R  ++ + P  Y+VL++ND+YTPMEFV+ 
Sbjct: 11  IMSHSAFTTAPTGMATRKDGDDNGTGLGLATRTRTRTKKPSPYKVLMLNDDYTPMEFVVL 70

Query: 78  VLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            LQ FF  + E A  +ML VH +G+G CGV++YE+AE KV+QV++++RQ+Q+PLQC +E+
Sbjct: 71  CLQRFFRMNLEDATRVMLHVHQKGVGVCGVFSYEVAETKVSQVVDFARQNQHPLQCTLEK 130


>gi|238028418|ref|YP_002912649.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           glumae BGR1]
 gi|237877612|gb|ACR29945.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           glumae BGR1]
          Length = 104

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/89 (52%), Positives = 67/89 (75%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R   K++ P +Y+V+L+ND++TPMEFV+ V+Q +F KD ETA  IML+VH +G G CGVY
Sbjct: 15  RSEQKLKPPSMYKVVLLNDDFTPMEFVVMVVQEYFKKDRETATQIMLRVHREGRGVCGVY 74

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             +IA  KV QV+ ++RQ  +PLQC+ME+
Sbjct: 75  TRDIASTKVEQVVTHARQAGHPLQCVMEE 103


>gi|187925140|ref|YP_001896782.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           phytofirmans PsJN]
 gi|238689617|sp|B2T6J4|CLPS_BURPP RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|187716334|gb|ACD17558.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           phytofirmans PsJN]
          Length = 104

 Score =  109 bits (272), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/89 (52%), Positives = 67/89 (75%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R   K++ P +Y+V+L+ND++TPMEFV+ V+Q +F KD ETA  +MLKVH +G G CGVY
Sbjct: 15  RQEKKLKPPSMYKVVLLNDDFTPMEFVVMVVQEYFNKDRETATQVMLKVHREGRGVCGVY 74

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             +IA  KV QV+ ++RQ  +PLQC+ME+
Sbjct: 75  TRDIASTKVEQVVTHARQAGHPLQCVMEE 103


>gi|300310730|ref|YP_003774822.1| ATP-dependent Clp protease adaptor protein [Herbaspirillum
           seropedicae SmR1]
 gi|300073515|gb|ADJ62914.1| ATP-dependent Clp protease adaptor protein [Herbaspirillum
           seropedicae SmR1]
          Length = 104

 Score =  109 bits (272), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/89 (55%), Positives = 66/89 (74%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R  SK++ P +Y+VLL+ND+YTPMEFV+ V+Q +F KD ETA  IMLKVH  G G CGVY
Sbjct: 15  RQESKLKPPPMYQVLLLNDDYTPMEFVVAVIQQYFNKDRETATQIMLKVHRDGKGMCGVY 74

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             +IA  KV  V+ ++R+  +PLQC+ME+
Sbjct: 75  PKDIASTKVELVLTHARKAGHPLQCVMEE 103


>gi|89056376|ref|YP_511827.1| ATP-dependent Clp protease adaptor protein ClpS [Jannaschia sp.
           CCS1]
 gi|88865925|gb|ABD56802.1| ATP-dependent Clp protease adaptor protein ClpS [Jannaschia sp.
           CCS1]
          Length = 116

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 76/113 (67%), Gaps = 3/113 (2%)

Query: 26  FMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK 85
            MAD   N  G    D  +    +  +K + P +Y+V+L+ND+YTPMEFV+HVL+ FF  
Sbjct: 6   MMADEPDNVDG---GDGDVSVATKTKTKTQRPPMYKVMLLNDDYTPMEFVVHVLERFFGI 62

Query: 86  DHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            H  A  IML VH +G+   GV+++EIAE KV QVM+++R++Q+PLQC ME++
Sbjct: 63  THSQAVEIMLVVHKKGLAVVGVFSHEIAETKVAQVMDFARRNQHPLQCTMEKE 115


>gi|124267648|ref|YP_001021652.1| hypothetical protein Mpe_A2462 [Methylibium petroleiphilum PM1]
 gi|124260423|gb|ABM95417.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 118

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 66/88 (75%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R S++V  P++Y+V+L+ND+YTPMEFV+ VLQ FF +D ETA  IMLK+HH+G G CGVY
Sbjct: 29  RQSARVEPPRMYQVVLLNDDYTPMEFVVMVLQEFFQRDIETATQIMLKIHHEGRGVCGVY 88

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIME 136
             ++A  KV  V+  +++  +PLQC ME
Sbjct: 89  TKDVASTKVESVLAAAKRSGHPLQCTME 116


>gi|312795291|ref|YP_004028213.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           rhizoxinica HKI 454]
 gi|312167066|emb|CBW74069.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           rhizoxinica HKI 454]
          Length = 104

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/89 (53%), Positives = 67/89 (75%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R   K + P +YRV+L+ND++TPMEFV+ V+Q +F KD +TA  IMLKVH++G G CGVY
Sbjct: 15  RQEHKAKPPSMYRVVLLNDDFTPMEFVVMVIQQYFNKDRDTATQIMLKVHYEGRGICGVY 74

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             +IA  KV QV+ ++RQ  +PLQC+ME+
Sbjct: 75  TRDIASTKVEQVVTHARQAGHPLQCVMEE 103


>gi|82703365|ref|YP_412931.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrosospira
           multiformis ATCC 25196]
 gi|123544045|sp|Q2Y6T2|CLPS_NITMU RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|82411430|gb|ABB75539.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrosospira
           multiformis ATCC 25196]
          Length = 102

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 66/86 (76%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           SK++ P +++V+L+ND++TPM+FV+ VLQ FF  + E A  IMLKVH  G G CGVY  +
Sbjct: 16  SKLKPPPMFKVILLNDDFTPMDFVVTVLQTFFSMNREQATQIMLKVHMDGAGVCGVYPND 75

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +A  KV QV+ ++RQHQ+PLQC+ME+
Sbjct: 76  VASTKVEQVVAFARQHQHPLQCVMEE 101


>gi|91784980|ref|YP_560186.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           xenovorans LB400]
 gi|170693565|ref|ZP_02884723.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           graminis C4D1M]
 gi|296157172|ref|ZP_06840008.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia sp.
           Ch1-1]
 gi|307730769|ref|YP_003907993.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia sp.
           CCGE1003]
 gi|323527132|ref|YP_004229285.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia sp.
           CCGE1001]
 gi|122970195|sp|Q13UV5|CLPS_BURXL RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|91688934|gb|ABE32134.1| Putative ATP-dependent Clp protease adaptor protein ClpS
           [Burkholderia xenovorans LB400]
 gi|170141347|gb|EDT09517.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           graminis C4D1M]
 gi|295892508|gb|EFG72290.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia sp.
           Ch1-1]
 gi|307585304|gb|ADN58702.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia sp.
           CCGE1003]
 gi|323384134|gb|ADX56225.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia sp.
           CCGE1001]
          Length = 104

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/89 (51%), Positives = 67/89 (75%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R   K++ P +Y+V+L+ND++TPMEFV+ ++Q +F KD ETA  +MLKVH +G G CGVY
Sbjct: 15  RQEKKLKPPSMYKVVLLNDDFTPMEFVVMIVQEYFNKDRETATQVMLKVHREGRGVCGVY 74

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             +IA  KV QV+ ++RQ  +PLQC+ME+
Sbjct: 75  TRDIASTKVEQVVTHARQAGHPLQCVMEE 103


>gi|262274511|ref|ZP_06052322.1| ATP-dependent Clp protease adaptor protein ClpS [Grimontia hollisae
           CIP 101886]
 gi|262221074|gb|EEY72388.1| ATP-dependent Clp protease adaptor protein ClpS [Grimontia hollisae
           CIP 101886]
          Length = 106

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 71/95 (74%), Gaps = 2/95 (2%)

Query: 45  DSEVRFS--SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
           DS+V+ +  +K++ P LY+V+L ND+YTPMEFV+ VLQ FF  D + A  +ML VH++G 
Sbjct: 11  DSDVKEAEETKLKPPSLYKVVLNNDDYTPMEFVVEVLQRFFSMDIDKATQLMLTVHYEGR 70

Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             CG+Y  E+AEMKV QVM Y+++HQ+PL C ME+
Sbjct: 71  AVCGIYTAEVAEMKVAQVMMYAKEHQHPLLCTMEK 105


>gi|325981356|ref|YP_004293758.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrosomonas sp.
           AL212]
 gi|325530875|gb|ADZ25596.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrosomonas sp.
           AL212]
          Length = 102

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 67/85 (78%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           K + P LY++LL+ND++TPMEFV+ VL++FF  + E A  IMLKVH +G+G CG+Y  +I
Sbjct: 17  KYKPPPLYKILLLNDDFTPMEFVVEVLKSFFSMNQEQATLIMLKVHTEGVGVCGIYPGDI 76

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           A  KV QV+ +SR++Q+PL+C+ME+
Sbjct: 77  ASTKVKQVIEFSRRNQHPLRCVMEE 101


>gi|209517459|ref|ZP_03266300.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia sp.
           H160]
 gi|295677449|ref|YP_003605973.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia sp.
           CCGE1002]
 gi|209502113|gb|EEA02128.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia sp.
           H160]
 gi|295437292|gb|ADG16462.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia sp.
           CCGE1002]
          Length = 104

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/89 (51%), Positives = 67/89 (75%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R   K++ P +Y+V+L+ND++TPMEFV+ ++Q +F KD ETA  +MLKVH +G G CGVY
Sbjct: 15  RQEQKLKPPSMYKVVLLNDDFTPMEFVVMIVQEYFNKDRETATQVMLKVHREGRGVCGVY 74

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             +IA  KV QV+ ++RQ  +PLQC+ME+
Sbjct: 75  TRDIASTKVEQVVTHARQAGHPLQCVMEE 103


>gi|187478584|ref|YP_786608.1| ATP-dependent Clp protease adaptor protein ClpS [Bordetella avium
           197N]
 gi|123514730|sp|Q2KZI1|CLPS_BORA1 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|115423170|emb|CAJ49701.1| ATP-dependent clp protease adaptor protein [Bordetella avium 197N]
          Length = 104

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/86 (54%), Positives = 64/86 (74%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
           S++   P +Y+V+L+ND+YTPMEFV+ VLQ FF K+ E A  IML+VHH+G G CGVY  
Sbjct: 17  SARTAPPPMYQVVLLNDDYTPMEFVVKVLQKFFGKNQEEATRIMLQVHHEGRGICGVYVR 76

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIME 136
           ++A  ++ QV  Y+R  Q+PLQCIME
Sbjct: 77  DVAATRIAQVAQYARARQHPLQCIME 102


>gi|85704460|ref|ZP_01035562.1| ATP-dependent Clp protease, adaptor protein ClpS [Roseovarius sp.
           217]
 gi|85670868|gb|EAQ25727.1| ATP-dependent Clp protease, adaptor protein ClpS [Roseovarius sp.
           217]
          Length = 112

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 67/91 (73%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
           V    K + P LY+VLL+ND+YTPMEFV+ VL+ FF   H  A  IML VH +G+   GV
Sbjct: 22  VATRPKTKRPPLYKVLLLNDDYTPMEFVVAVLERFFGMSHAQAFEIMLTVHKKGLAVVGV 81

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           +++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 82  FSHEIAETKVAQVMDFARRHQHPLQCTMEKE 112


>gi|149201108|ref|ZP_01878083.1| ATP-dependent Clp protease adaptor protein ClpS [Roseovarius sp.
           TM1035]
 gi|149145441|gb|EDM33467.1| ATP-dependent Clp protease adaptor protein ClpS [Roseovarius sp.
           TM1035]
          Length = 112

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 67/91 (73%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
           V    K + P LY+VLL+ND+YTPMEFV+ VL+ FF   H  A  IML VH +G+   GV
Sbjct: 22  VATRPKTKRPPLYKVLLLNDDYTPMEFVVAVLERFFGMSHAQAFEIMLTVHKKGLAVVGV 81

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           +++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 82  FSHEIAETKVAQVMDFARRHQHPLQCTMEKE 112


>gi|217969671|ref|YP_002354905.1| ATP-dependent Clp protease adaptor protein ClpS [Thauera sp. MZ1T]
 gi|217506998|gb|ACK54009.1| ATP-dependent Clp protease adaptor protein ClpS [Thauera sp. MZ1T]
          Length = 102

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 66/86 (76%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           ++ R P L++V+L+ND+YTPM+FVI VLQ +F  D E A  +ML+VH +G+G CGV+  +
Sbjct: 16  TRTRPPPLFKVMLLNDDYTPMDFVIVVLQKYFGMDRERATRVMLQVHREGMGVCGVFPRD 75

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           IA  KV QV +++RQHQ+PL C+ME+
Sbjct: 76  IATTKVEQVTSFARQHQHPLACVMEE 101


>gi|149928085|ref|ZP_01916332.1| ATP-dependent Clp protease adaptor protein ClpS [Limnobacter sp.
           MED105]
 gi|149823171|gb|EDM82408.1| ATP-dependent Clp protease adaptor protein ClpS [Limnobacter sp.
           MED105]
          Length = 134

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 48/87 (55%), Positives = 65/87 (74%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
           + K ++P +Y+V+L+ND+YTPMEFV+ VLQ FF K  E A  IMLKVH +G G CGVY  
Sbjct: 47  TQKAKLPPMYQVVLLNDDYTPMEFVVIVLQKFFGKGREQATQIMLKVHREGKGVCGVYPK 106

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +IA  KV  V  +++QHQ+PLQC+ME+
Sbjct: 107 DIASTKVEMVCGFAKQHQHPLQCVMEE 133


>gi|153835790|ref|ZP_01988457.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio harveyi
           HY01]
 gi|156973856|ref|YP_001444763.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio harveyi
           ATCC BAA-1116]
 gi|269960956|ref|ZP_06175325.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio harveyi
           1DA3]
 gi|166214749|sp|A7N1L5|CLPS_VIBHB RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|148867478|gb|EDL66853.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio harveyi
           HY01]
 gi|156525450|gb|ABU70536.1| hypothetical protein VIBHAR_01566 [Vibrio harveyi ATCC BAA-1116]
 gi|269834175|gb|EEZ88265.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio harveyi
           1DA3]
          Length = 106

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 66/89 (74%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R S+KV+ PKLY V+L ND+YTPM+FVI VL+ FF  D + A  IMLK+H++G   CG Y
Sbjct: 17  RESTKVQPPKLYNVVLNNDDYTPMDFVIEVLERFFSHDIDKATQIMLKIHYEGKAICGTY 76

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           + EIAE KV QV  YSR++++PL C MEQ
Sbjct: 77  SAEIAETKVAQVTMYSRENEHPLLCTMEQ 105


>gi|163856974|ref|YP_001631272.1| ATP-dependent Clp protease adaptor protein ClpS [Bordetella petrii
           DSM 12804]
 gi|229889825|sp|A9IQ03|CLPS_BORPD RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|163260702|emb|CAP43004.1| hypothetical protein Bpet2662 [Bordetella petrii]
          Length = 104

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 64/88 (72%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           +  ++   P +Y+V+L+ND+YTPMEFV+ VLQ FF K+ E A  IML+VHH+G G CGVY
Sbjct: 15  KAPARTAPPPMYQVVLLNDDYTPMEFVVKVLQKFFGKNQEDATRIMLQVHHEGRGTCGVY 74

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIME 136
             ++A  ++ QV  Y+R  Q+PLQC+ME
Sbjct: 75  PRDVAATRIAQVAQYARARQHPLQCVME 102


>gi|297539530|ref|YP_003675299.1| ATP-dependent Clp protease adaptor protein ClpS [Methylotenera sp.
           301]
 gi|297258877|gb|ADI30722.1| ATP-dependent Clp protease adaptor protein ClpS [Methylotenera sp.
           301]
          Length = 108

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/98 (51%), Positives = 69/98 (70%), Gaps = 3/98 (3%)

Query: 39  EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           E D  L  EV   +K ++P ++ VLL+ND+YTPMEFV+  ++ FF K  E A  IMLKVH
Sbjct: 12  ENDVALKPEV---AKPKLPPMFNVLLLNDDYTPMEFVVECIERFFNKSREQATQIMLKVH 68

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
            +G+  CGVY  +IAE K+NQV++Y+R  Q+PLQC+ E
Sbjct: 69  TEGLAVCGVYPQDIAETKMNQVLSYARDQQHPLQCVTE 106


>gi|304321615|ref|YP_003855258.1| ATP-dependent Clp protease adaptor protein ClpS [Parvularcula
           bermudensis HTCC2503]
 gi|303300517|gb|ADM10116.1| ATP-dependent Clp protease adaptor protein ClpS [Parvularcula
           bermudensis HTCC2503]
          Length = 146

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/107 (45%), Positives = 75/107 (70%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
           M++ G  +    + + V+   K + P LY+VLL+ND+YTP EFV+ +L+  F+K H+ A 
Sbjct: 40  MSEDGDEKPGGNVATIVKEKPKAKRPSLYKVLLLNDDYTPQEFVVWLLEAVFHKGHDEAL 99

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            IML VH+ G+G CGVY YE+AE KV QV+  +R++++PLQC ME++
Sbjct: 100 RIMLHVHNHGVGICGVYTYEVAETKVAQVLELARRNEHPLQCTMERE 146


>gi|255264828|ref|ZP_05344170.1| ATP-dependent Clp protease adaptor protein ClpS [Thalassiobium sp.
           R2A62]
 gi|255107163|gb|EET49837.1| ATP-dependent Clp protease adaptor protein ClpS [Thalassiobium sp.
           R2A62]
          Length = 113

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/114 (47%), Positives = 77/114 (67%), Gaps = 6/114 (5%)

Query: 25  IFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFY 84
           I MAD      G  + D  L  E R   K + P LY+V+++ND+YTPMEFV+ VL+ FF 
Sbjct: 6   IMMADD----PGGDDSDVGLAVETR--PKTKRPPLYKVMILNDDYTPMEFVVMVLERFFG 59

Query: 85  KDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            +H  +  +ML VH +G+   GV++YEIAE KV QVM++++QHQ+PLQC ME++
Sbjct: 60  MNHAQSFELMLTVHKKGLAVVGVFSYEIAETKVAQVMDFAQQHQHPLQCTMEKE 113


>gi|91788801|ref|YP_549753.1| ATP-dependent Clp protease adaptor protein ClpS [Polaromonas sp.
           JS666]
 gi|91698026|gb|ABE44855.1| ATP-dependent Clp protease adaptor protein ClpS [Polaromonas sp.
           JS666]
          Length = 125

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 66/88 (75%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R   K + P++Y+V+L+ND+YTPMEFV+ +LQ FF KDHETA  IMLK+H  G G CGV+
Sbjct: 35  RRPQKTKPPQMYQVVLLNDDYTPMEFVVVILQEFFNKDHETATQIMLKIHLDGKGVCGVF 94

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIME 136
           + ++A  KV+QV   +R++ +PLQC+ E
Sbjct: 95  SKDVAATKVDQVTEAARKNGHPLQCVSE 122


>gi|83855083|ref|ZP_00948613.1| ATP-dependent Clp protease, adaptor protein ClpS [Sulfitobacter sp.
           NAS-14.1]
 gi|83941607|ref|ZP_00954069.1| ATP-dependent Clp protease, adaptor protein ClpS [Sulfitobacter sp.
           EE-36]
 gi|83842926|gb|EAP82093.1| ATP-dependent Clp protease, adaptor protein ClpS [Sulfitobacter sp.
           NAS-14.1]
 gi|83847427|gb|EAP85302.1| ATP-dependent Clp protease, adaptor protein ClpS [Sulfitobacter sp.
           EE-36]
          Length = 113

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 48/98 (48%), Positives = 71/98 (72%)

Query: 41  DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
           D+  D   +   K + P LY+V+L+ND++TPMEFV+ VL+ FF  +H  A  IML VH +
Sbjct: 15  DDETDLLTKTKPKTKRPPLYKVMLLNDDFTPMEFVVIVLERFFGLNHAQAFEIMLTVHKK 74

Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           G+   GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 75  GLAVVGVFSHEIAETKVAQVMDFARRHQHPLQCTMEKE 112


>gi|186475335|ref|YP_001856805.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           phymatum STM815]
 gi|238691266|sp|B2JDY3|CLPS_BURP8 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|184191794|gb|ACC69759.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
           phymatum STM815]
          Length = 104

 Score =  108 bits (269), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 46/89 (51%), Positives = 67/89 (75%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R   K++ P +++V+L+ND++TPMEFV+ ++Q +F KD ETA  IMLKVH +G G CGVY
Sbjct: 15  RQEQKLKPPAMFKVVLLNDDFTPMEFVVMIVQEYFNKDRETATQIMLKVHREGRGVCGVY 74

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             +IA  KV QV+ ++RQ  +PLQC+ME+
Sbjct: 75  TRDIASTKVEQVVTHARQAGHPLQCVMEE 103


>gi|56477975|ref|YP_159564.1| ATP-dependent Clp protease adaptor protein ClpS [Aromatoleum
           aromaticum EbN1]
 gi|67460190|sp|Q5P201|CLPS_AZOSE RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|56314018|emb|CAI08663.1| ATP-dependent Clp protease adaptor protein ClpS [Aromatoleum
           aromaticum EbN1]
          Length = 102

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 66/87 (75%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
            ++ + P LY+VLL+ND++TPM+FVI VLQ FF  D E A  +ML+VH +G+G CGV+  
Sbjct: 15  QTRTKPPPLYKVLLLNDDFTPMDFVIVVLQKFFGMDRERATRVMLQVHREGMGVCGVFPK 74

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           ++A  KV QV+ ++RQHQ+PL C+ME+
Sbjct: 75  DVAATKVEQVVAFARQHQHPLACVMEE 101


>gi|28897787|ref|NP_797392.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153837344|ref|ZP_01990011.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
           parahaemolyticus AQ3810]
 gi|260365333|ref|ZP_05777884.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
           parahaemolyticus K5030]
 gi|260876951|ref|ZP_05889306.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
           parahaemolyticus AN-5034]
 gi|260897908|ref|ZP_05906404.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
           parahaemolyticus Peru-466]
 gi|260901417|ref|ZP_05909812.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
           parahaemolyticus AQ4037]
 gi|33301900|sp|Q87QY5|CLPS_VIBPA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|28806000|dbj|BAC59276.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149749375|gb|EDM60148.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
           parahaemolyticus AQ3810]
 gi|308085449|gb|EFO35144.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
           parahaemolyticus Peru-466]
 gi|308093908|gb|EFO43603.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
           parahaemolyticus AN-5034]
 gi|308107509|gb|EFO45049.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
           parahaemolyticus AQ4037]
 gi|308112689|gb|EFO50229.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
           parahaemolyticus K5030]
 gi|328473237|gb|EGF44085.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
           parahaemolyticus 10329]
          Length = 106

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 66/89 (74%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R S+KV+ PKLY V+L ND+YTPM+FVI VL+ FF  D + A  IMLKVH++G   CG Y
Sbjct: 17  RESTKVQPPKLYNVVLNNDDYTPMDFVIEVLERFFSHDIDKATQIMLKVHYEGKAVCGTY 76

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           + EIAE KV QV  Y+R++++PL C MEQ
Sbjct: 77  SAEIAETKVAQVTMYARENEHPLLCTMEQ 105


>gi|296135869|ref|YP_003643111.1| ATP-dependent Clp protease adaptor protein ClpS [Thiomonas
           intermedia K12]
 gi|294340063|emb|CAZ88431.1| ATP-dependent Clp protease adaptor protein clpS [Thiomonas sp. 3As]
 gi|295795991|gb|ADG30781.1| ATP-dependent Clp protease adaptor protein ClpS [Thiomonas
           intermedia K12]
          Length = 108

 Score =  107 bits (268), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 66/88 (75%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R + +++ P +Y+V+L+NDN+TPMEFV+ V+Q++F KD ETA  IMLKVH  G G CGVY
Sbjct: 19  RQTLRLKPPAMYQVILLNDNFTPMEFVVVVIQHYFNKDRETATQIMLKVHRDGRGVCGVY 78

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIME 136
             +IA  KV QV+  +RQ  +PLQC+ME
Sbjct: 79  TRDIAATKVEQVIGAARQAGHPLQCVME 106


>gi|163802085|ref|ZP_02195981.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio sp. AND4]
 gi|159174226|gb|EDP59034.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio sp. AND4]
          Length = 106

 Score =  107 bits (268), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 65/89 (73%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R S+KV+ PKLY V+L ND+YTPM+FVI VL+ FF  D + A  IMLK+H+ G   CG Y
Sbjct: 17  RESTKVQPPKLYNVVLNNDDYTPMDFVIEVLERFFSHDIDKATQIMLKIHYDGKAICGTY 76

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           + EIAE KV QV  YSR++++PL C MEQ
Sbjct: 77  SAEIAETKVAQVTMYSRENEHPLLCTMEQ 105


>gi|34499123|ref|NP_903338.1| hypothetical protein CV_3668 [Chromobacterium violaceum ATCC 12472]
 gi|39930967|sp|Q7NRW1|CLPS_CHRVO RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|34104974|gb|AAQ61330.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 106

 Score =  107 bits (268), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 48/89 (53%), Positives = 68/89 (76%), Gaps = 2/89 (2%)

Query: 51  SSKVR--VPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           +S+VR   P +Y+VLL+ND++TPM+FV+ VLQ FF+ + E A  IML+VH QG G CGVY
Sbjct: 17  ASRVRENPPPMYKVLLLNDDFTPMDFVVQVLQQFFHMNREKATHIMLQVHTQGHGVCGVY 76

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             ++A  KV QV+ Y++ HQ+PLQC+ME+
Sbjct: 77  TKDVAATKVEQVLQYAKAHQHPLQCVMEE 105


>gi|292492310|ref|YP_003527749.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrosococcus
           halophilus Nc4]
 gi|291580905|gb|ADE15362.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrosococcus
           halophilus Nc4]
          Length = 107

 Score =  107 bits (267), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 47/86 (54%), Positives = 64/86 (74%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            K++ P +Y+V+++ND+YTPMEFV+ VLQ FF  D E A  IM +VH +G G CGV+ YE
Sbjct: 21  PKLKRPPMYKVVMLNDDYTPMEFVVEVLQTFFAMDREKATRIMWQVHTEGKGICGVFTYE 80

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           IAE KV QV  YS  HQ+PL+C++E+
Sbjct: 81  IAETKVAQVNEYSLNHQHPLKCVLEK 106


>gi|152969471|ref|YP_001334580.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|206576057|ref|YP_002239467.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella
           pneumoniae 342]
 gi|238893943|ref|YP_002918677.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella
           pneumoniae NTUH-K2044]
 gi|288936315|ref|YP_003440374.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella
           variicola At-22]
 gi|290510629|ref|ZP_06549999.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella sp.
           1_1_55]
 gi|329998510|ref|ZP_08303132.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella sp. MS
           92-3]
 gi|166214736|sp|A6T6X9|CLPS_KLEP7 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238066652|sp|B5XYB2|CLPS_KLEP3 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|150954320|gb|ABR76350.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|206565115|gb|ACI06891.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella
           pneumoniae 342]
 gi|238546259|dbj|BAH62610.1| ATP-dependent Clp protease adaptor protein [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|288891024|gb|ADC59342.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella
           variicola At-22]
 gi|289777345|gb|EFD85343.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella sp.
           1_1_55]
 gi|328538655|gb|EGF64752.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella sp. MS
           92-3]
          Length = 105

 Score =  107 bits (267), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 50/106 (47%), Positives = 74/106 (69%), Gaps = 2/106 (1%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
           M+K+   +F++ +D EVR    ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A 
Sbjct: 1   MSKRDWLDFEHLVDDEVR--DAIKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERAT 58

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            +ML VH++G   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 59  QLMLTVHYEGKAICGVFTAEVAETKVAMVNQYARENEHPLLCTLEK 104


>gi|198282816|ref|YP_002219137.1| ATP-dependent Clp protease adaptor protein ClpS [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|198247337|gb|ACH82930.1| ATP-dependent Clp protease adaptor protein ClpS [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 102

 Score =  107 bits (267), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 43/82 (52%), Positives = 66/82 (80%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           P++YRVLLVND++TPM++V+H+L+ +F+K H+ A  +M+ VH QG G CG++ Y++AE K
Sbjct: 21  PRMYRVLLVNDDFTPMDYVVHILEAYFHKPHDEAVAVMMAVHQQGRGLCGIFPYDLAETK 80

Query: 117 VNQVMNYSRQHQYPLQCIMEQK 138
           V  V   +RQHQ+PL+CIME++
Sbjct: 81  VALVTADARQHQHPLRCIMEKE 102


>gi|220935008|ref|YP_002513907.1| ATP-dependent Clp protease adaptor protein ClpS [Thioalkalivibrio
           sp. HL-EbGR7]
 gi|219996318|gb|ACL72920.1| ATP-dependent Clp protease adaptor protein ClpS [Thioalkalivibrio
           sp. HL-EbGR7]
          Length = 106

 Score =  107 bits (267), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 49/86 (56%), Positives = 64/86 (74%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            K++ P  Y+V+L+ND+YTPMEFV+ VL++FF  D E A  IML VH +G G CG+Y  +
Sbjct: 20  PKLKPPPQYQVVLLNDDYTPMEFVVEVLESFFGMDREKATRIMLHVHTRGKGVCGIYPRD 79

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           IAE KV QV +Y+RQHQ+PL C MEQ
Sbjct: 80  IAETKVAQVNDYARQHQHPLLCAMEQ 105


>gi|332187681|ref|ZP_08389416.1| ATP-dependent Clp protease adaptor ClpS family protein
           [Sphingomonas sp. S17]
 gi|332012247|gb|EGI54317.1| ATP-dependent Clp protease adaptor ClpS family protein
           [Sphingomonas sp. S17]
          Length = 118

 Score =  107 bits (266), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 68/96 (70%)

Query: 42  NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
           N L    R  ++ + P  YRVL++ND+YTPMEFV+  LQ FF    + A  +ML VH +G
Sbjct: 22  NGLGVATRTRARTKQPTPYRVLMLNDDYTPMEFVVLCLQRFFRMSMDDATRVMLHVHQRG 81

Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +G CGV++YE+AE KV QV++++R +Q+PLQC +E+
Sbjct: 82  VGVCGVFSYEVAETKVAQVIDFARANQHPLQCTLEK 117


>gi|78485455|ref|YP_391380.1| ATP-dependent Clp protease adaptor protein ClpS [Thiomicrospira
           crunogena XCL-2]
 gi|123555526|sp|Q31GL7|CLPS_THICR RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|78363741|gb|ABB41706.1| ATP-dependent Clp protease adaptor protein ClpS [Thiomicrospira
           crunogena XCL-2]
          Length = 104

 Score =  107 bits (266), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 48/85 (56%), Positives = 63/85 (74%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            KV+ PK Y+V+L+ND++TPM+FV+ VL  FF  D   A  +ML VH +G G CGVY+ E
Sbjct: 18  PKVKPPKRYQVVLLNDDFTPMDFVVDVLTRFFGMDEAKANAVMLAVHTKGKGTCGVYSRE 77

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIME 136
           +AEMKV QV  Y+R+HQ+PLQC ME
Sbjct: 78  VAEMKVMQVNQYAREHQHPLQCEME 102


>gi|218668114|ref|YP_002425013.1| ATP-dependent Clp protease adaptor protein ClpS [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|218520327|gb|ACK80913.1| ATP-dependent Clp protease adaptor protein ClpS [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 114

 Score =  107 bits (266), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 43/82 (52%), Positives = 66/82 (80%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           P++YRVLLVND++TPM++V+H+L+ +F+K H+ A  +M+ VH QG G CG++ Y++AE K
Sbjct: 33  PRMYRVLLVNDDFTPMDYVVHILEAYFHKPHDEAVAVMMAVHQQGRGLCGIFPYDLAETK 92

Query: 117 VNQVMNYSRQHQYPLQCIMEQK 138
           V  V   +RQHQ+PL+CIME++
Sbjct: 93  VALVTADARQHQHPLRCIMEKE 114


>gi|134095622|ref|YP_001100697.1| ATP-dependent Clp protease adaptor protein ClpS [Herminiimonas
           arsenicoxydans]
 gi|254763818|sp|A4G7T9|CLPS_HERAR RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|133739525|emb|CAL62576.1| ATP-dependent Clp protease adaptor protein ClpS [Herminiimonas
           arsenicoxydans]
          Length = 102

 Score =  107 bits (266), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 48/90 (53%), Positives = 66/90 (73%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
           +R   K++ P +Y+VLL+ND+YTPMEFV+ +LQ +F KD ETA  IML VH  G G CGV
Sbjct: 12  MRQEQKLKPPSMYQVLLLNDDYTPMEFVVMILQEYFSKDRETATQIMLMVHRDGKGICGV 71

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           Y  +IA  KV  V+N++R+  +PLQC+ME+
Sbjct: 72  YPKDIASTKVELVLNHARKAGHPLQCVMEE 101


>gi|319793921|ref|YP_004155561.1| ATP-dependent clp protease adaptor protein clps [Variovorax
           paradoxus EPS]
 gi|315596384|gb|ADU37450.1| ATP-dependent Clp protease adaptor protein ClpS [Variovorax
           paradoxus EPS]
          Length = 119

 Score =  106 bits (265), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 64/88 (72%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R   K   P++Y+V+++ND+YTPMEFVI VLQ +F KD ETA  IMLK+H  G G CGVY
Sbjct: 29  RRPQKTAPPQMYQVVMLNDDYTPMEFVIVVLQEYFSKDRETATQIMLKIHLDGRGVCGVY 88

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIME 136
           + ++A  KVNQVM  ++Q  +PLQC+ E
Sbjct: 89  SRDMAATKVNQVMEAAQQAGHPLQCVSE 116


>gi|152983115|ref|YP_001354205.1| ATP-dependent Clp protease adaptor protein ClpS [Janthinobacterium
           sp. Marseille]
 gi|254763819|sp|A6T108|CLPS_JANMA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|151283192|gb|ABR91602.1| ATP-dependent Clp protease adaptor protein ClpS [Janthinobacterium
           sp. Marseille]
          Length = 102

 Score =  106 bits (265), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 48/90 (53%), Positives = 66/90 (73%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
           +R   K++ P +Y+VLL+ND+YTPMEFV+ +LQ +F KD ETA  IML VH  G G CGV
Sbjct: 12  MRQEQKLKPPSMYQVLLLNDDYTPMEFVVLILQEYFSKDRETATQIMLMVHRDGKGICGV 71

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           Y  +IA  KV  V+N++R+  +PLQC+ME+
Sbjct: 72  YPKDIASTKVELVLNHARKAGHPLQCVMEE 101


>gi|77165887|ref|YP_344412.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrosococcus
           oceani ATCC 19707]
 gi|254433959|ref|ZP_05047467.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrosococcus
           oceani AFC27]
 gi|76884201|gb|ABA58882.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrosococcus
           oceani ATCC 19707]
 gi|207090292|gb|EDZ67563.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrosococcus
           oceani AFC27]
          Length = 107

 Score =  106 bits (265), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 64/86 (74%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            K++ P LY+V+++ND+YTPMEFV+ VLQ FF  D E A  +M +VH +G G CGV+ YE
Sbjct: 21  PKLKRPPLYKVVMLNDDYTPMEFVVKVLQAFFAMDREKATRVMWQVHTEGKGICGVFTYE 80

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           IAE K +QV  YS  HQ+PL+C++E+
Sbjct: 81  IAETKASQVNEYSMNHQHPLKCVLER 106


>gi|255020026|ref|ZP_05292099.1| ATP-dependent Clp protease adaptor protein ClpS [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970555|gb|EET28044.1| ATP-dependent Clp protease adaptor protein ClpS [Acidithiobacillus
           caldus ATCC 51756]
          Length = 102

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 66/88 (75%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
             +++ P  YRVLL+ND++TPM++V+ VLQ +F+K HE A  IML+VHH G G CGVY Y
Sbjct: 15  EPRLKEPSRYRVLLLNDDFTPMDYVVQVLQQYFHKTHEEAVQIMLEVHHSGRGICGVYPY 74

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           ++AE KV  V   +RQHQ+PL+C ME++
Sbjct: 75  DMAETKVALVTADARQHQHPLRCTMEKE 102


>gi|332110106|gb|EGJ10734.1| hypothetical protein RBXJA2T_10429 [Rubrivivax benzoatilyticus JA2]
          Length = 110

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 67/88 (76%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R + +V+ P LY+V+L+ND+YTPMEFV+ VLQ++F +D +TA  IMLK+HH+G G CGVY
Sbjct: 21  RKAQRVKPPSLYQVVLLNDDYTPMEFVVMVLQHYFQRDLDTATHIMLKIHHEGRGVCGVY 80

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIME 136
             ++A  KV  V+  +R+  +PLQCIME
Sbjct: 81  PKDVAATKVELVLAAARRDGHPLQCIME 108


>gi|163744786|ref|ZP_02152146.1| ATP-dependent Clp protease, putative [Oceanibulbus indolifex
           HEL-45]
 gi|161381604|gb|EDQ06013.1| ATP-dependent Clp protease, putative [Oceanibulbus indolifex
           HEL-45]
          Length = 130

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 72/96 (75%), Gaps = 2/96 (2%)

Query: 45  DSEV--RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
           D+E+  +   K + P LY+V+L+ND++TPMEFV+ VL+ FF  +H  A  IML VH +G+
Sbjct: 34  DTELLTKTRPKTKRPPLYKVMLLNDDFTPMEFVVLVLERFFGLNHAQAFEIMLTVHKKGL 93

Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
              GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 94  AVVGVFSHEIAETKVAQVMDFARRHQHPLQCTMEKE 129


>gi|310815392|ref|YP_003963356.1| ATP-dependent Clp protease adaptor protein clpS [Ketogulonicigenium
           vulgare Y25]
 gi|308754127|gb|ADO42056.1| ATP-dependent Clp protease adaptor protein clpS [Ketogulonicigenium
           vulgare Y25]
          Length = 117

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 71/106 (66%), Gaps = 9/106 (8%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
           N++G+A         ++   K + P LY+V+L+ND+YTPMEFV+ VLQ FF  D   +  
Sbjct: 21  NERGVA---------LKTRPKTKRPPLYKVMLLNDDYTPMEFVVLVLQRFFSLDESRSVE 71

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IML VH +G+    V+ YE+AE KV QVM ++R++Q+PLQC MEQ+
Sbjct: 72  IMLAVHTKGVAVVAVFPYEVAETKVAQVMEFARRNQHPLQCTMEQE 117


>gi|241763390|ref|ZP_04761445.1| ATP-dependent Clp protease adaptor protein ClpS [Acidovorax
           delafieldii 2AN]
 gi|241367432|gb|EER61743.1| ATP-dependent Clp protease adaptor protein ClpS [Acidovorax
           delafieldii 2AN]
          Length = 122

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 66/88 (75%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R + KVR P++Y+V+++ND+YTPMEFVI VLQ FF KD ETA  IMLK+H  G G CGVY
Sbjct: 32  RRAQKVRPPQMYQVVMLNDDYTPMEFVIVVLQEFFNKDRETATQIMLKIHLDGKGICGVY 91

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIME 136
           + ++A  KV+QV+  + +  +PLQC+ E
Sbjct: 92  SRDVAATKVDQVLEAALKAGHPLQCVSE 119


>gi|91229058|ref|ZP_01262884.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
           alginolyticus 12G01]
 gi|269967653|ref|ZP_06181703.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
           alginolyticus 40B]
 gi|91187451|gb|EAS73791.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
           alginolyticus 12G01]
 gi|269827740|gb|EEZ82024.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
           alginolyticus 40B]
          Length = 106

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 66/89 (74%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R S+KV+ PKLY V+L ND+YTPM+FVI VL+ FF  D + A  IML+VH++G   CG Y
Sbjct: 17  RESTKVQPPKLYNVVLNNDDYTPMDFVIEVLERFFSHDIDKATQIMLQVHYEGKAICGTY 76

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           + EIAE KV QV  Y+R++++PL C MEQ
Sbjct: 77  SAEIAETKVAQVTMYARENEHPLLCTMEQ 105


>gi|319944074|ref|ZP_08018353.1| ATP-dependent Clp protease [Lautropia mirabilis ATCC 51599]
 gi|319742651|gb|EFV95059.1| ATP-dependent Clp protease [Lautropia mirabilis ATCC 51599]
          Length = 102

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/84 (53%), Positives = 64/84 (76%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P LY+VLL+ND++TPM+FV+ VLQ FF    E A  +ML+VHH+G G CG++  +IA
Sbjct: 18  LKPPPLYKVLLLNDDFTPMDFVVQVLQKFFSMSLEKATDVMLQVHHEGRGVCGMFPRDIA 77

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
             KV QV  ++RQHQ+PLQC+ME+
Sbjct: 78  LTKVEQVSGFARQHQHPLQCVMEE 101


>gi|237809064|ref|YP_002893504.1| ATP-dependent Clp protease adaptor protein ClpS [Tolumonas auensis
           DSM 9187]
 gi|237501325|gb|ACQ93918.1| ATP-dependent Clp protease adaptor protein ClpS [Tolumonas auensis
           DSM 9187]
          Length = 104

 Score =  105 bits (263), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 66/86 (76%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           ++++ P +Y+V+L+ND+YTPM+FV+ VLQ FF  D E A  +ML VH+ G G CGVY  +
Sbjct: 18  TEIQPPSMYKVVLLNDDYTPMDFVVEVLQRFFRMDLEKATQVMLAVHYDGKGICGVYTAD 77

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           IAE KV+QV +Y+R+H++PL C MEQ
Sbjct: 78  IAETKVDQVNHYARKHEHPLLCTMEQ 103


>gi|171464059|ref|YP_001798172.1| ATP-dependent Clp protease adaptor protein ClpS [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171193597|gb|ACB44558.1| ATP-dependent Clp protease adaptor protein ClpS [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 118

 Score =  105 bits (263), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/85 (55%), Positives = 66/85 (77%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           +V+VP +Y+VLL+ND+YTPMEFV+ V+Q +F KD+ETA  IML+VH  G G CGV+  ++
Sbjct: 33  QVKVPSMYKVLLLNDDYTPMEFVVMVIQEYFNKDYETATRIMLQVHLVGKGACGVFTRDV 92

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           A  KV+QV+  SR+  +PLQC ME+
Sbjct: 93  AATKVHQVIELSREAGHPLQCTMEE 117


>gi|262041017|ref|ZP_06014237.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259041633|gb|EEW42684.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 105

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 73/106 (68%), Gaps = 2/106 (1%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
           M+K+   +F++ +D EVR    ++ P +Y+V+ VND+YTPMEFVI VLQ FF  D E A 
Sbjct: 1   MSKRDWLDFEHLVDDEVR--DAIKPPSMYKVIFVNDDYTPMEFVIDVLQKFFSYDVERAT 58

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            +ML VH++G   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 59  QLMLTVHYEGKAICGVFTAEVAETKVAMVNQYARENEHPLLCTLEK 104


>gi|83746257|ref|ZP_00943310.1| ATP-dependent Clp protease adaptor protein ClpS [Ralstonia
           solanacearum UW551]
 gi|207723598|ref|YP_002253997.1| atp-dependent clp protease adaptor protein clps [Ralstonia
           solanacearum MolK2]
 gi|207742558|ref|YP_002258950.1| atp-dependent clp protease adaptor protein clps [Ralstonia
           solanacearum IPO1609]
 gi|300690670|ref|YP_003751665.1| ATP-dependent Clp protease adapter protein clpS [Ralstonia
           solanacearum PSI07]
 gi|300703254|ref|YP_003744856.1| ATP-dependent clp protease adapter protein clps [Ralstonia
           solanacearum CFBP2957]
 gi|83727007|gb|EAP74132.1| ATP-dependent Clp protease adaptor protein ClpS [Ralstonia
           solanacearum UW551]
 gi|206588800|emb|CAQ35763.1| atp-dependent clp protease adaptor protein clps [Ralstonia
           solanacearum MolK2]
 gi|206593951|emb|CAQ60878.1| atp-dependent clp protease adaptor protein clps [Ralstonia
           solanacearum IPO1609]
 gi|299070917|emb|CBJ42221.1| ATP-dependent Clp protease adapter protein clpS [Ralstonia
           solanacearum CFBP2957]
 gi|299077730|emb|CBJ50368.1| ATP-dependent Clp protease adapter protein clpS [Ralstonia
           solanacearum PSI07]
          Length = 108

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/89 (51%), Positives = 63/89 (70%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R    ++ P +Y+VLL+ND+YTPMEFV+ +LQ +F KD ETA  IML VH +G G CG+Y
Sbjct: 19  RKEQALKPPAMYKVLLLNDDYTPMEFVVMILQQYFSKDRETATQIMLTVHREGKGVCGIY 78

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             +IA  KV  V  ++RQ  +PLQC+ME+
Sbjct: 79  TRDIAATKVELVSTHARQAGHPLQCVMEE 107


>gi|311107314|ref|YP_003980167.1| ATP-dependent Clp protease adaptor protein ClpS [Achromobacter
           xylosoxidans A8]
 gi|310762003|gb|ADP17452.1| ATP-dependent Clp protease adaptor protein ClpS [Achromobacter
           xylosoxidans A8]
 gi|317407691|gb|EFV87624.1| ATP-dependent Clp protease adapter protein ClpS [Achromobacter
           xylosoxidans C54]
          Length = 104

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 61/78 (78%)

Query: 59  LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
           +Y+VLL+ND+YTPMEFV+ VLQ FF K+HE A  IML+VHH+G G CGVY  ++A  ++ 
Sbjct: 25  MYQVLLLNDDYTPMEFVVKVLQKFFNKNHEEATRIMLQVHHEGRGVCGVYPRDLAATRIA 84

Query: 119 QVMNYSRQHQYPLQCIME 136
           QV  Y+R  Q+PLQC+ME
Sbjct: 85  QVAQYARARQHPLQCVME 102


>gi|17547184|ref|NP_520586.1| ATP-dependent Clp protease adaptor protein ClpS [Ralstonia
           solanacearum GMI1000]
 gi|21542317|sp|Q8XWK9|CLPS_RALSO RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|17429486|emb|CAD16172.1| hypothetical atp-dependent clp protease adaptor protein clps
           [Ralstonia solanacearum GMI1000]
 gi|299065938|emb|CBJ37119.1| ATP-dependent Clp protease adapter protein clpS [Ralstonia
           solanacearum CMR15]
          Length = 108

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/89 (51%), Positives = 63/89 (70%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R    ++ P +Y+VLL+ND+YTPMEFV+ +LQ +F KD ETA  IML VH +G G CG+Y
Sbjct: 19  RKEQALKPPAMYKVLLLNDDYTPMEFVVMILQQYFSKDRETATQIMLTVHREGRGVCGIY 78

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             +IA  KV  V  ++RQ  +PLQC+ME+
Sbjct: 79  TRDIAATKVELVSTHARQAGHPLQCVMEE 107


>gi|145589929|ref|YP_001156526.1| ATP-dependent Clp protease adaptor protein ClpS [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048335|gb|ABP34962.1| ATP-dependent Clp protease adaptor protein ClpS [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 118

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 65/85 (76%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           +++ P +Y+VLL+ND+YTPMEFV+ V+Q +F KDHETA  IML+VH  G G CGV+  ++
Sbjct: 33  QIKAPSMYKVLLLNDDYTPMEFVVMVIQEYFNKDHETATRIMLQVHLVGKGICGVFTRDV 92

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           A  KV+QV+  SR+  +PLQC ME+
Sbjct: 93  AATKVHQVIELSREAGHPLQCTMEE 117


>gi|291295834|ref|YP_003507232.1| ATP-dependent Clp protease adaptor protein ClpS [Meiothermus ruber
           DSM 1279]
 gi|290470793|gb|ADD28212.1| ATP-dependent Clp protease adaptor protein ClpS [Meiothermus ruber
           DSM 1279]
          Length = 98

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/93 (50%), Positives = 62/93 (66%)

Query: 46  SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
           ++ R  +  R P  Y+VLL+ND+YTPM+FV+ VL  +F K    A  IML+VHH G+G  
Sbjct: 6   TKTRSQTATRTPPRYKVLLLNDDYTPMDFVVEVLMRYFKKSKLEATRIMLQVHHAGVGVA 65

Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           GVY +EIAE KVNQVM  +    +PLQC ME +
Sbjct: 66  GVYPFEIAETKVNQVMAAASAEGHPLQCTMEPE 98


>gi|239815631|ref|YP_002944541.1| ATP-dependent Clp protease adaptor protein ClpS [Variovorax
           paradoxus S110]
 gi|259491251|sp|C5CLL8|CLPS_VARPS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|239802208|gb|ACS19275.1| ATP-dependent Clp protease adaptor protein ClpS [Variovorax
           paradoxus S110]
          Length = 119

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 63/88 (71%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R   K   P++Y+V+++ND+YTPMEFVI VLQ +F KD ETA  IMLK+H  G G CGVY
Sbjct: 29  RRPQKTAPPQMYQVVMLNDDYTPMEFVIVVLQEYFNKDRETATQIMLKIHLDGRGVCGVY 88

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIME 136
           + ++A  KVNQVM  + Q  +PLQC+ E
Sbjct: 89  SRDLAATKVNQVMEAAHQAGHPLQCVSE 116


>gi|153871083|ref|ZP_02000343.1| ATP-dependent Clp protease adaptor protein ClpS [Beggiatoa sp. PS]
 gi|152072449|gb|EDN69655.1| ATP-dependent Clp protease adaptor protein ClpS [Beggiatoa sp. PS]
          Length = 106

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/97 (49%), Positives = 74/97 (76%), Gaps = 2/97 (2%)

Query: 41  DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
           D+ ++ E +  SK++ P +Y+V+L+ND+YTPM+FV+H+L+ FF  + + A  IML+VH +
Sbjct: 11  DDVIEEEQK--SKLKRPPMYKVILLNDDYTPMDFVVHILEIFFGMEKDLATHIMLQVHTK 68

Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           G G CG Y+ EIAE KV QV NY+R++Q+PL CI+E+
Sbjct: 69  GKGICGTYSREIAETKVAQVNNYARENQHPLLCILEK 105


>gi|254465322|ref|ZP_05078733.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacterales
           bacterium Y4I]
 gi|206686230|gb|EDZ46712.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacterales
           bacterium Y4I]
          Length = 121

 Score =  105 bits (261), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 66/91 (72%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            +   K + P  Y+VLL+ND+YTPMEFV+ VL+ FF   H  A  IML VH +G+   GV
Sbjct: 30  TKTRPKTKRPPRYKVLLLNDDYTPMEFVVMVLERFFGMTHAQAFEIMLTVHKKGVAVVGV 89

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           +++E+AE KV QVM+++R+HQ+PLQC ME++
Sbjct: 90  FSHEVAETKVGQVMDFARRHQHPLQCTMEKE 120


>gi|84516587|ref|ZP_01003946.1| ATP-dependent Clp protease, adaptor protein ClpS [Loktanella
           vestfoldensis SKA53]
 gi|84509623|gb|EAQ06081.1| ATP-dependent Clp protease, adaptor protein ClpS [Loktanella
           vestfoldensis SKA53]
          Length = 118

 Score =  105 bits (261), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 44/87 (50%), Positives = 67/87 (77%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            K + P +Y+VL++ND++TPMEFV+HVL+ FF   H  A  +ML VH +G+   GV+++E
Sbjct: 32  PKTKRPPMYKVLILNDDFTPMEFVVHVLERFFGLSHAQAFELMLTVHKKGVAVVGVFSHE 91

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IAE KV QVM+++++HQ+PLQC ME++
Sbjct: 92  IAETKVAQVMDFAQRHQHPLQCTMEKE 118


>gi|170727045|ref|YP_001761071.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella woodyi
           ATCC 51908]
 gi|238688675|sp|B1KIC5|CLPS_SHEWM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|169812392|gb|ACA86976.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella woodyi
           ATCC 51908]
          Length = 102

 Score =  105 bits (261), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 65/91 (71%)

Query: 47  EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
           E R  S+V  P +Y+V+L ND+YTPM+FVI VLQ FF K  E A  IML +HHQG G CG
Sbjct: 11  EERVESEVMPPSMYKVILNNDDYTPMDFVIEVLQLFFKKTEEQATDIMLAIHHQGKGICG 70

Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           ++ + IAE KV QV  ++RQ+Q+PL C +E+
Sbjct: 71  IFPFGIAETKVAQVNQFARQNQHPLLCSLEK 101


>gi|261344322|ref|ZP_05971966.1| ATP-dependent Clp protease adaptor protein ClpS [Providencia
           rustigianii DSM 4541]
 gi|282567927|gb|EFB73462.1| ATP-dependent Clp protease adaptor protein ClpS [Providencia
           rustigianii DSM 4541]
          Length = 106

 Score =  105 bits (261), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/102 (49%), Positives = 66/102 (64%), Gaps = 2/102 (1%)

Query: 36  GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
           G  + D    +EV     ++ P +Y+VLL ND+YTPM+FV+ VLQ FF  D E A  IML
Sbjct: 6   GTFKTDTIFKNEVE--QTLQPPSMYKVLLNNDDYTPMDFVVEVLQKFFSFDEERATQIML 63

Query: 96  KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            VH QG G CGVY  E+AE K  QV  ++R+H+YPL C +E+
Sbjct: 64  DVHFQGKGSCGVYTAEVAETKAAQVNAFAREHEYPLLCTIEK 105


>gi|187929804|ref|YP_001900291.1| ATP-dependent Clp protease adaptor protein ClpS [Ralstonia
           pickettii 12J]
 gi|241663930|ref|YP_002982290.1| ATP-dependent Clp protease adaptor protein ClpS [Ralstonia
           pickettii 12D]
 gi|309781481|ref|ZP_07676217.1| ATP-dependent Clp protease adaptor protein ClpS [Ralstonia sp.
           5_7_47FAA]
 gi|238691811|sp|B2UAR2|CLPS_RALPJ RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|187726694|gb|ACD27859.1| ATP-dependent Clp protease adaptor protein ClpS [Ralstonia
           pickettii 12J]
 gi|240865957|gb|ACS63618.1| ATP-dependent Clp protease adaptor protein ClpS [Ralstonia
           pickettii 12D]
 gi|308919894|gb|EFP65555.1| ATP-dependent Clp protease adaptor protein ClpS [Ralstonia sp.
           5_7_47FAA]
          Length = 108

 Score =  105 bits (261), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/89 (51%), Positives = 63/89 (70%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R    ++ P +Y+VLL+ND+YTPMEFV+ +LQ +F KD ETA  IML VH +G G CG+Y
Sbjct: 19  RKEQALKPPAMYKVLLLNDDYTPMEFVVMILQQYFSKDRETATQIMLTVHREGKGVCGLY 78

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             +IA  KV  V  ++RQ  +PLQC+ME+
Sbjct: 79  TRDIAATKVELVSTHARQAGHPLQCVMEE 107


>gi|126733462|ref|ZP_01749209.1| ATP-dependent Clp protease, putative [Roseobacter sp. CCS2]
 gi|126716328|gb|EBA13192.1| ATP-dependent Clp protease, putative [Roseobacter sp. CCS2]
          Length = 113

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 44/87 (50%), Positives = 67/87 (77%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            K + P +Y+VL++ND++TPMEFV+HVL+ FF   H  A  +ML VH +G+   GV+++E
Sbjct: 27  PKTKRPPMYKVLILNDDFTPMEFVVHVLERFFGLSHAQAFELMLTVHKKGVAVVGVFSHE 86

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IAE KV QVM+++++HQ+PLQC ME++
Sbjct: 87  IAETKVAQVMDFAQRHQHPLQCTMEKE 113


>gi|254438854|ref|ZP_05052348.1| ATP-dependent Clp protease adaptor protein ClpS [Octadecabacter
           antarcticus 307]
 gi|198254300|gb|EDY78614.1| ATP-dependent Clp protease adaptor protein ClpS [Octadecabacter
           antarcticus 307]
          Length = 113

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 44/87 (50%), Positives = 67/87 (77%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           +K + P LY+V+++ND+YTPMEFV+HVL+ FF   H+ +  IM+ VH +G+   GV+++E
Sbjct: 27  TKTKRPPLYKVMILNDDYTPMEFVVHVLERFFSLTHDQSVDIMMAVHKKGLAVVGVFSHE 86

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IAE KV QVM+ + +HQ+PLQC ME++
Sbjct: 87  IAETKVAQVMDLAARHQHPLQCTMEKE 113


>gi|293606229|ref|ZP_06688592.1| ATP-dependent Clp protease adaptor protein ClpS [Achromobacter
           piechaudii ATCC 43553]
 gi|292815376|gb|EFF74494.1| ATP-dependent Clp protease adaptor protein ClpS [Achromobacter
           piechaudii ATCC 43553]
          Length = 104

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 61/78 (78%)

Query: 59  LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
           +Y+VLL+ND+YTPMEFV+ VLQ FF K+HE A  IML+VHH+G G CGVY  ++A  ++ 
Sbjct: 25  MYQVLLLNDDYTPMEFVVKVLQKFFNKNHEEATRIMLQVHHEGRGVCGVYPRDLAATRIA 84

Query: 119 QVMNYSRQHQYPLQCIME 136
           QV  Y+R  Q+PLQC+ME
Sbjct: 85  QVGQYARARQHPLQCVME 102


>gi|121998183|ref|YP_001002970.1| ATP-dependent Clp protease adaptor protein ClpS [Halorhodospira
           halophila SL1]
 gi|158514017|sp|A1WWV6|CLPS_HALHL RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|121589588|gb|ABM62168.1| ATP-dependent Clp protease adaptor protein ClpS [Halorhodospira
           halophila SL1]
          Length = 106

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 65/86 (75%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
             ++ P +Y+V+L+ND+YTPM+FV+ VLQ FF KD   A  IML VH +G G CGVY+ +
Sbjct: 20  PSLKQPPMYKVVLLNDDYTPMDFVVEVLQRFFNKDRSQATQIMLHVHTRGKGVCGVYSRD 79

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +AE KV+QV +Y+R+H++PL C ME+
Sbjct: 80  VAETKVSQVNDYAREHEHPLLCTMEE 105


>gi|325915388|ref|ZP_08177705.1| hypothetical protein XVE_1596 [Xanthomonas vesicatoria ATCC 35937]
 gi|325538435|gb|EGD10114.1| hypothetical protein XVE_1596 [Xanthomonas vesicatoria ATCC 35937]
          Length = 126

 Score =  104 bits (260), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/109 (50%), Positives = 71/109 (65%), Gaps = 1/109 (0%)

Query: 29  DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
           + RM +K   E D+ L  E     +V  P  Y+VLL+ND+YTPM+FV+ VLQ FF  D E
Sbjct: 18  NGRMPRKTSHEHDHGLTVEAS-KPEVAPPPRYQVLLLNDDYTPMDFVVTVLQQFFNLDLE 76

Query: 89  TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            A  +ML VH +G G CGVY+ E+AE KV QV  +SR +Q+PL C MEQ
Sbjct: 77  RATQVMLHVHTRGRGVCGVYSREVAESKVAQVNEFSRMNQHPLLCTMEQ 125


>gi|237749126|ref|ZP_04579606.1| ATP-dependent Clp protease adaptor protein ClpS [Oxalobacter
           formigenes OXCC13]
 gi|229380488|gb|EEO30579.1| ATP-dependent Clp protease adaptor protein ClpS [Oxalobacter
           formigenes OXCC13]
          Length = 102

 Score =  104 bits (260), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 44/87 (50%), Positives = 65/87 (74%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
           ++ ++ P +Y+V+L+ND++TPMEFVI VLQ +F+KD E A  IMLKVHH+G G CG++  
Sbjct: 15  AAILKAPPMYKVVLLNDDFTPMEFVISVLQEYFFKDREAATRIMLKVHHEGKGICGIFPK 74

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +IA  KV  V+ ++R   +PLQC ME+
Sbjct: 75  DIANTKVELVLKHARGEGHPLQCTMEE 101


>gi|121604835|ref|YP_982164.1| ATP-dependent Clp protease adaptor protein ClpS [Polaromonas
           naphthalenivorans CJ2]
 gi|120593804|gb|ABM37243.1| ATP-dependent Clp protease adaptor protein ClpS [Polaromonas
           naphthalenivorans CJ2]
          Length = 145

 Score =  104 bits (260), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/97 (50%), Positives = 69/97 (71%), Gaps = 2/97 (2%)

Query: 42  NCLDSEV--RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
           N  DS V  R   K + P++Y+V+L+ND+YTPMEFV+ V+Q FF KD ETA  IMLK+H 
Sbjct: 46  NGGDSVVLERRPQKTKPPQMYQVVLLNDDYTPMEFVVVVIQEFFNKDRETATQIMLKIHL 105

Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
            G G CGV++ ++A  KV+QV   +R++ +PLQC+ E
Sbjct: 106 DGKGICGVFSRDVAATKVDQVTEAARKNGHPLQCVSE 142


>gi|218548404|ref|YP_002382195.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia
           fergusonii ATCC 35469]
 gi|226706568|sp|B7LN49|CLPS_ESCF3 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|218355945|emb|CAQ88560.1| regulatory protein for ClpA substrate specificity [Escherichia
           fergusonii ATCC 35469]
 gi|324113823|gb|EGC07798.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia
           fergusonii B253]
 gi|325496825|gb|EGC94684.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia
           fergusonii ECD227]
          Length = 106

 Score =  104 bits (260), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 69/99 (69%), Gaps = 2/99 (2%)

Query: 39  EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           +FD   + +VR    ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A  +ML VH
Sbjct: 9   DFDQLAEDKVR--DALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLTVH 66

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +QG   CGV+  E+AE KV  V NY+R++++PL C +E+
Sbjct: 67  YQGKAICGVFTAEVAETKVAMVNNYARENEHPLLCTLEK 105


>gi|99082374|ref|YP_614528.1| ATP-dependent Clp protease adaptor protein ClpS [Ruegeria sp.
           TM1040]
 gi|122397582|sp|Q1GDK0|CLPS_SILST RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|99038654|gb|ABF65266.1| ATP-dependent Clp protease adaptor protein ClpS [Ruegeria sp.
           TM1040]
          Length = 113

 Score =  104 bits (260), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 79/117 (67%), Gaps = 7/117 (5%)

Query: 21  LMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQ 80
           LM  + M+D+  +     E D  L ++ R   + + P  Y+VLL+ND+YTPMEFV+ VL+
Sbjct: 2   LMQPLMMSDNPDD-----ESDLGLLTKTR--PRTQRPPRYKVLLLNDDYTPMEFVVIVLE 54

Query: 81  NFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            FF  +H  A  IML VH +G+   GV+++E+AE KV QVM+Y+R+HQ+PLQC ME+
Sbjct: 55  RFFGLNHAQAFEIMLTVHKKGLAVVGVFSHEVAETKVAQVMDYARRHQHPLQCTMEK 111


>gi|121611395|ref|YP_999202.1| ATP-dependent Clp protease adaptor protein ClpS [Verminephrobacter
           eiseniae EF01-2]
 gi|158514006|sp|A1WRC7|CLPS_VEREI RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|121556035|gb|ABM60184.1| ATP-dependent Clp protease adaptor protein ClpS [Verminephrobacter
           eiseniae EF01-2]
          Length = 119

 Score =  104 bits (259), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 65/88 (73%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R   K   P++Y+V+++ND+YTPMEFVI VLQ FF KD ETA  IMLK+H  G G CGVY
Sbjct: 29  RRPEKTPPPQMYQVVMLNDDYTPMEFVIVVLQEFFSKDRETATRIMLKIHLDGKGICGVY 88

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIME 136
           ++++A  KV+QV++ + +  +PLQC+ E
Sbjct: 89  SHDVAATKVDQVLDAALKAGHPLQCVSE 116


>gi|119384493|ref|YP_915549.1| ATP-dependent Clp protease adaptor protein ClpS [Paracoccus
           denitrificans PD1222]
 gi|119374260|gb|ABL69853.1| ATP-dependent Clp protease adaptor protein ClpS [Paracoccus
           denitrificans PD1222]
          Length = 105

 Score =  104 bits (259), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 66/91 (72%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
           V+   + + P +Y+VLL+ND++TPMEFV+HVL+  F  +H  A  IML VH +GI   GV
Sbjct: 15  VKTRPRTQRPPMYKVLLLNDDFTPMEFVVHVLERLFNMNHAQAIEIMLTVHRKGIAVVGV 74

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           +++EIAE KV QVM  +R+ Q+PLQC ME++
Sbjct: 75  FSHEIAETKVAQVMELARRQQHPLQCTMEKE 105


>gi|33597157|ref|NP_884800.1| ATP-dependent Clp protease adaptor protein ClpS [Bordetella
           parapertussis 12822]
 gi|33601001|ref|NP_888561.1| ATP-dependent Clp protease adaptor protein ClpS [Bordetella
           bronchiseptica RB50]
 gi|39931037|sp|Q7W7E8|CLPS_BORPA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|39931045|sp|Q7WKT7|CLPS_BORBR RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|33566608|emb|CAE37866.1| hypothetical protein BPP2572 [Bordetella parapertussis]
 gi|33575436|emb|CAE32514.1| hypothetical protein BB2017 [Bordetella bronchiseptica RB50]
          Length = 104

 Score =  104 bits (259), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 62/86 (72%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
            ++   P +Y+V+L+ND+YTPMEFV+ VLQ FF K+ E A  IML+VHH+G   CGVY  
Sbjct: 17  PARTAPPPMYQVVLLNDDYTPMEFVVKVLQKFFGKNSEDATRIMLQVHHEGRAVCGVYPR 76

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIME 136
           ++A  ++ QV  Y+R  Q+PLQCIME
Sbjct: 77  DLAATRIAQVSQYARARQHPLQCIME 102


>gi|33593716|ref|NP_881360.1| ATP-dependent Clp protease adaptor protein ClpS [Bordetella
           pertussis Tohama I]
 gi|39931026|sp|Q7VVC1|CLPS_BORPE RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|33563789|emb|CAE43031.1| hypothetical protein BP2756 [Bordetella pertussis Tohama I]
          Length = 104

 Score =  104 bits (259), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 62/86 (72%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
            ++   P +Y+V+L+ND+YTPMEFV+ VLQ FF K+ E A  IML+VHH+G   CGVY  
Sbjct: 17  PARTAPPPMYQVVLLNDDYTPMEFVVKVLQKFFGKNSEDATRIMLQVHHEGRAVCGVYPR 76

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIME 136
           ++A  ++ QV  Y+R  Q+PLQCIME
Sbjct: 77  DLAATRIAQVSQYARARQHPLQCIME 102


>gi|300113413|ref|YP_003759988.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrosococcus
           watsonii C-113]
 gi|299539350|gb|ADJ27667.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrosococcus
           watsonii C-113]
          Length = 107

 Score =  103 bits (258), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 63/86 (73%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            K++ P LY+V+++ND+YTPMEFV+ VLQ FF  D   A  +M +VH +G G CGV+ YE
Sbjct: 21  PKLKRPPLYKVVMLNDDYTPMEFVVKVLQTFFAMDRGKATRVMWQVHTEGRGICGVFTYE 80

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           IAE K +QV  YS  HQ+PL+C++E+
Sbjct: 81  IAETKASQVNEYSMNHQHPLKCVLER 106


>gi|94311825|ref|YP_585035.1| ATP-dependent Clp protease adaptor protein ClpS [Cupriavidus
           metallidurans CH34]
 gi|158564205|sp|Q1LJB0|CLPS_RALME RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|93355677|gb|ABF09766.1| regulatory protein for ClpA substrate specificity [Cupriavidus
           metallidurans CH34]
          Length = 108

 Score =  103 bits (258), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 64/89 (71%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R   +++ P +Y+V+L+ND+YTPMEFV+ +LQ +F +D ETA  IML VH +G G CG+Y
Sbjct: 19  RKEQQLKPPAMYKVVLLNDDYTPMEFVVMILQQYFSRDRETATQIMLTVHREGKGVCGIY 78

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             +IA  KV  V  ++RQ  +PLQC+ME+
Sbjct: 79  TRDIAATKVELVSTHARQAGHPLQCVMEE 107


>gi|73542438|ref|YP_296958.1| ATP-dependent Clp protease adaptor protein ClpS [Ralstonia eutropha
           JMP134]
 gi|123624188|sp|Q46XL9|CLPS_RALEJ RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|72119851|gb|AAZ62114.1| ATP-dependent Clp protease adaptor protein ClpS [Ralstonia eutropha
           JMP134]
          Length = 108

 Score =  103 bits (258), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 64/89 (71%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R   +++ P +Y+V+L+ND+YTPMEFV+ +LQ +F +D ETA  IML VH +G G CG+Y
Sbjct: 19  RKEQQLKPPAMYKVVLLNDDYTPMEFVVMILQQYFSRDRETATQIMLTVHREGKGVCGIY 78

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             +IA  KV  V  ++RQ  +PLQC+ME+
Sbjct: 79  TRDIAATKVELVSTHARQAGHPLQCVMEE 107


>gi|259417778|ref|ZP_05741697.1| ATP-dependent Clp protease adaptor protein ClpS [Silicibacter sp.
           TrichCH4B]
 gi|259346684|gb|EEW58498.1| ATP-dependent Clp protease adaptor protein ClpS [Silicibacter sp.
           TrichCH4B]
          Length = 107

 Score =  103 bits (258), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 46/90 (51%), Positives = 66/90 (73%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            +   + + P  Y+VLL+ND+YTPMEFV+ VL+ FF  +H  A  IML VH +G+   GV
Sbjct: 16  TKTRPRTQRPPRYKVLLLNDDYTPMEFVVIVLERFFGLNHAQAFEIMLTVHKKGLAVVGV 75

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +++E+AE KV QVM+Y+R+HQ+PLQC ME+
Sbjct: 76  FSHEVAETKVAQVMDYARRHQHPLQCTMEK 105


>gi|237746972|ref|ZP_04577452.1| ATP-dependent Clp protease adaptor protein ClpS [Oxalobacter
           formigenes HOxBLS]
 gi|229378323|gb|EEO28414.1| ATP-dependent Clp protease adaptor protein ClpS [Oxalobacter
           formigenes HOxBLS]
          Length = 143

 Score =  103 bits (258), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 66/87 (75%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
           ++ ++ P +YRVLL+ND++TPM+FVI VLQ +F+K+ E A  IMLKVH +G G CG++  
Sbjct: 56  ATVLKPPPMYRVLLLNDDFTPMDFVIFVLQEYFHKNAEMATRIMLKVHREGKGVCGIFPK 115

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +IA  KV QV+ ++RQ  +PLQC ME+
Sbjct: 116 DIANTKVEQVIRHARQEGHPLQCTMEE 142


>gi|188991659|ref|YP_001903669.1| hypothetical protein xccb100_2265 [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167733419|emb|CAP51620.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 169

 Score =  103 bits (257), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/109 (50%), Positives = 71/109 (65%), Gaps = 1/109 (0%)

Query: 29  DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
           + RM +K   E D+ L  E     +V  P  Y+VLL+ND+YTPM+FV+ VLQ FF  D E
Sbjct: 61  NGRMPRKTSHEHDHGLVVET-SKPEVAPPPRYQVLLLNDDYTPMDFVVTVLQQFFNLDLE 119

Query: 89  TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            A  +ML VH +G G CGVY+ E+AE KV QV  +SR +Q+PL C MEQ
Sbjct: 120 RATQVMLHVHTRGRGVCGVYSREVAESKVAQVNEFSRMNQHPLLCTMEQ 168


>gi|113969987|ref|YP_733780.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella sp.
           MR-4]
 gi|114047222|ref|YP_737772.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella sp.
           MR-7]
 gi|117920199|ref|YP_869391.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella sp.
           ANA-3]
 gi|123130486|sp|Q0HJP4|CLPS_SHESM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|123131487|sp|Q0HVZ0|CLPS_SHESR RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|166214747|sp|A0KW16|CLPS_SHESA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|113884671|gb|ABI38723.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella sp.
           MR-4]
 gi|113888664|gb|ABI42715.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella sp.
           MR-7]
 gi|117612531|gb|ABK47985.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella sp.
           ANA-3]
          Length = 102

 Score =  103 bits (257), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 66/91 (72%)

Query: 47  EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
           E R  S++  P +Y+V+L ND+YTPM+FVI VLQ FF K+ + A  IML +HHQG G CG
Sbjct: 11  EERVESELMPPSMYKVILNNDDYTPMDFVIEVLQIFFRKNEQEATDIMLTIHHQGKGICG 70

Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           ++ Y IAE KV QV  ++RQ+Q+PL C +E+
Sbjct: 71  IFPYGIAETKVIQVNQFARQNQHPLLCSLEK 101


>gi|114332013|ref|YP_748235.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrosomonas
           eutropha C91]
 gi|122313284|sp|Q0AEG2|CLPS_NITEC RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|114309027|gb|ABI60270.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrosomonas
           eutropha C91]
          Length = 103

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 43/87 (49%), Positives = 66/87 (75%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           +++  P LY+V+L+ND++TPM+FV+ VL++FF+ D E A  IMLK+H +G G CG Y  +
Sbjct: 17  TRLTPPPLYKVILINDDFTPMDFVVKVLRHFFFMDEEMATRIMLKIHTEGAGICGTYPGD 76

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IA  KV QV  +S+Q+Q+PL C+ME++
Sbjct: 77  IAATKVQQVNEFSKQNQHPLMCVMEKE 103


>gi|313201916|ref|YP_004040574.1| ATP-dependent clp protease adaptor protein clps [Methylovorus sp.
           MP688]
 gi|312441232|gb|ADQ85338.1| ATP-dependent Clp protease adaptor protein ClpS [Methylovorus sp.
           MP688]
          Length = 77

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 46/75 (61%), Positives = 60/75 (80%)

Query: 63  LLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMN 122
           +L+ND+YTPMEFV+ V+Q FF K  E A  IMLKVH +G G CGVY ++IAE KVNQV+ 
Sbjct: 2   ILLNDDYTPMEFVVEVIQRFFNKSREQATQIMLKVHTEGAGICGVYPHDIAETKVNQVLG 61

Query: 123 YSRQHQYPLQCIMEQ 137
           Y+R++Q+PLQC ME+
Sbjct: 62  YAREYQHPLQCAMEE 76


>gi|126725142|ref|ZP_01740985.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacterales
           bacterium HTCC2150]
 gi|126706306|gb|EBA05396.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacterales
           bacterium HTCC2150]
          Length = 115

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 72/102 (70%), Gaps = 4/102 (3%)

Query: 41  DNCLDSEVRFSSKVRV----PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           D+  +SE   ++K R     P +Y+VLL+ND+YTPMEFV+HVL+ FF  ++  A  IML 
Sbjct: 13  DDGDNSEGDVATKTRARTKRPPMYKVLLLNDDYTPMEFVVHVLERFFGINNAQAVEIMLT 72

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           VH +G+   GV+++EIAEMKV QVM+ + Q ++PLQC  E++
Sbjct: 73  VHKKGMAVVGVFSHEIAEMKVTQVMDLAHQQEHPLQCTFEKE 114


>gi|126174686|ref|YP_001050835.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
           OS155]
 gi|153000985|ref|YP_001366666.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
           OS185]
 gi|160875698|ref|YP_001555014.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
           OS195]
 gi|217973055|ref|YP_002357806.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
           OS223]
 gi|304409063|ref|ZP_07390684.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
           OS183]
 gi|307303066|ref|ZP_07582821.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
           BA175]
 gi|166214743|sp|A3D5F3|CLPS_SHEB5 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|166214744|sp|A6WP64|CLPS_SHEB8 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|189082478|sp|A9L4G4|CLPS_SHEB9 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|254763824|sp|B8E950|CLPS_SHEB2 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|125997891|gb|ABN61966.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
           OS155]
 gi|151365603|gb|ABS08603.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
           OS185]
 gi|160861220|gb|ABX49754.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
           OS195]
 gi|217498190|gb|ACK46383.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
           OS223]
 gi|304352884|gb|EFM17281.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
           OS183]
 gi|306913426|gb|EFN43848.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
           BA175]
 gi|315267887|gb|ADT94740.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
           OS678]
          Length = 102

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 70/101 (69%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           +A+  N    E R  S++  P +Y+V+L ND+YTPM+FVI VLQ FF K+ + A  IML 
Sbjct: 1   MAKIGNIEHVEERVESELMPPSMYKVVLNNDDYTPMDFVIEVLQVFFRKNEQEATDIMLT 60

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +HHQG G CG++ + IAE KV QV  ++RQ+Q+PL C +E+
Sbjct: 61  IHHQGKGICGIFPFGIAETKVIQVNQFARQNQHPLLCSLEK 101


>gi|254450586|ref|ZP_05064023.1| ATP-dependent Clp protease adaptor protein ClpS [Octadecabacter
           antarcticus 238]
 gi|198264992|gb|EDY89262.1| ATP-dependent Clp protease adaptor protein ClpS [Octadecabacter
           antarcticus 238]
          Length = 107

 Score =  103 bits (257), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 44/87 (50%), Positives = 66/87 (75%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           +K + P LY+V+++ND+YTPMEFV+HVL+ FF   H+ +  IML VH +G+   GV+++E
Sbjct: 21  TKTKRPPLYKVMILNDDYTPMEFVVHVLERFFSLTHDQSVEIMLAVHKKGLAVVGVFSHE 80

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IAE KV  VM+ + +HQ+PLQC ME++
Sbjct: 81  IAETKVALVMDLAARHQHPLQCTMEKE 107


>gi|257095587|ref|YP_003169228.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257048111|gb|ACV37299.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 102

 Score =  103 bits (256), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 64/87 (73%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
            ++++ P LY+VLL+ND++TPM+FVI VLQ FF  D E A  IMLKVH +G G CGV+  
Sbjct: 15  PTQLKPPPLYKVLLLNDDFTPMDFVIVVLQRFFGMDREHATRIMLKVHTEGRGVCGVFPR 74

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           ++A  KV QV  ++R +Q+PL C+ME+
Sbjct: 75  DVAATKVEQVTTFARSNQHPLACVMEE 101


>gi|311280209|ref|YP_003942440.1| ATP-dependent Clp protease adaptor protein ClpS [Enterobacter
           cloacae SCF1]
 gi|308749404|gb|ADO49156.1| ATP-dependent Clp protease adaptor protein ClpS [Enterobacter
           cloacae SCF1]
          Length = 106

 Score =  103 bits (256), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 67/99 (67%), Gaps = 2/99 (2%)

Query: 39  EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           +FD     +VR    ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A  +ML VH
Sbjct: 9   DFDQLTKDQVR--DALKPPAMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLTVH 66

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +QG   CGV+  E+AE KV  V  Y+R++++PL C +EQ
Sbjct: 67  YQGKAICGVFTAEVAETKVAMVNQYARENEHPLLCTLEQ 105


>gi|288941931|ref|YP_003444171.1| ATP-dependent Clp protease adaptor protein ClpS [Allochromatium
           vinosum DSM 180]
 gi|288897303|gb|ADC63139.1| ATP-dependent Clp protease adaptor protein ClpS [Allochromatium
           vinosum DSM 180]
          Length = 107

 Score =  103 bits (256), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 47/86 (54%), Positives = 64/86 (74%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            K+R P LY+VLL+ND+YTPMEFV+ VL+ FF  + E A  +ML VH +G+G CGV+  +
Sbjct: 21  PKLRRPPLYKVLLLNDDYTPMEFVVLVLEIFFGMNREKATQVMLHVHTRGVGVCGVFTKD 80

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           IAE KV QV +Y+R +Q+PL C ME+
Sbjct: 81  IAETKVAQVNDYARGNQHPLMCTMEE 106


>gi|15838043|ref|NP_298731.1| ATP-dependent Clp protease adaptor protein ClpS [Xylella fastidiosa
           9a5c]
 gi|12230825|sp|Q9PDD7|CLPS_XYLFA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|9106460|gb|AAF84251.1|AE003974_6 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 106

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 71/106 (66%), Gaps = 1/106 (0%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
           M++K + + DN L  E   ++KV  P  Y+VLL+ND+YTPM+FVI VLQ FF  D + A 
Sbjct: 1   MSQKTVHDQDNALLLETG-NTKVAPPPRYQVLLLNDDYTPMDFVIVVLQQFFAMDLKKAT 59

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            +ML VH +G G CG Y  E+AE KV QV  +SR HQ+PL C M+Q
Sbjct: 60  QVMLHVHTRGCGVCGFYTREVAESKVAQVNEFSRIHQHPLLCTMKQ 105


>gi|163737216|ref|ZP_02144634.1| ATP-dependent Clp protease adaptor protein ClpS [Phaeobacter
           gallaeciensis BS107]
 gi|163740373|ref|ZP_02147767.1| ATP-dependent Clp protease, adaptor protein ClpS [Phaeobacter
           gallaeciensis 2.10]
 gi|161386231|gb|EDQ10606.1| ATP-dependent Clp protease, adaptor protein ClpS [Phaeobacter
           gallaeciensis 2.10]
 gi|161389820|gb|EDQ14171.1| ATP-dependent Clp protease adaptor protein ClpS [Phaeobacter
           gallaeciensis BS107]
          Length = 113

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/98 (47%), Positives = 67/98 (68%)

Query: 41  DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
           D  L    +   K + P  Y+VLL+ND+YTPMEFV+ VL+ FF   H  A  +ML VH +
Sbjct: 15  DTDLGVLTKTRPKTQRPPRYKVLLLNDDYTPMEFVVMVLERFFNMTHAEAFEVMLTVHKK 74

Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           G+   GV+++EIAE KV QVM+++ +HQ+PLQC ME++
Sbjct: 75  GVAVVGVFSHEIAETKVGQVMDFAHRHQHPLQCTMEKE 112


>gi|239994276|ref|ZP_04714800.1| ATP-dependent Clp protease adaptor protein ClpS [Alteromonas
           macleodii ATCC 27126]
 gi|238693285|sp|B4S1R5|CLPS_ALTMD RecName: Full=ATP-dependent Clp protease adapter protein ClpS
          Length = 106

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/85 (56%), Positives = 60/85 (70%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           K + P +Y+VLL ND+YTPM+FVI VL  FF  D E A  +ML VH+QG   CG++  EI
Sbjct: 21  KPQPPPMYKVLLNNDDYTPMDFVIEVLMQFFNMDAEKANQLMLTVHYQGKAVCGIFTAEI 80

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           AE KV QV  Y+R+HQ+PL C MEQ
Sbjct: 81  AETKVMQVNQYARKHQHPLMCTMEQ 105


>gi|153864221|ref|ZP_01997190.1| ATP-dependent Clp protease adaptor protein ClpS [Beggiatoa sp. SS]
 gi|152146285|gb|EDN72811.1| ATP-dependent Clp protease adaptor protein ClpS [Beggiatoa sp. SS]
          Length = 106

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 65/86 (75%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            K++ P LY+V+L+ND+YTPM+FV+HVL+NFF  + + A  +ML+VH +G G CG Y  +
Sbjct: 20  PKLKRPPLYKVVLLNDDYTPMDFVVHVLENFFGMNQDLANHVMLQVHLEGKGICGTYTRD 79

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +AE KV QV  Y+R++Q+PL C ME+
Sbjct: 80  VAETKVTQVNTYARENQHPLLCTMEK 105


>gi|28198572|ref|NP_778886.1| ATP-dependent Clp protease adaptor protein ClpS [Xylella fastidiosa
           Temecula1]
 gi|71274782|ref|ZP_00651070.1| ATP-dependent Clp protease adaptor protein ClpS [Xylella fastidiosa
           Dixon]
 gi|71897611|ref|ZP_00679856.1| ATP-dependent Clp protease adaptor protein ClpS [Xylella fastidiosa
           Ann-1]
 gi|71901078|ref|ZP_00683187.1| ATP-dependent Clp protease adaptor protein ClpS [Xylella fastidiosa
           Ann-1]
 gi|170729972|ref|YP_001775405.1| ATP-dependent Clp protease adaptor protein ClpS [Xylella fastidiosa
           M12]
 gi|182681253|ref|YP_001829413.1| ATP-dependent Clp protease adaptor protein ClpS [Xylella fastidiosa
           M23]
 gi|32130316|sp|Q87DL8|CLPS_XYLFT RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238687979|sp|B0U6Q9|CLPS_XYLFM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238691117|sp|B2I9Y0|CLPS_XYLF2 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|28056656|gb|AAO28535.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
 gi|71164514|gb|EAO14228.1| ATP-dependent Clp protease adaptor protein ClpS [Xylella fastidiosa
           Dixon]
 gi|71729160|gb|EAO31282.1| ATP-dependent Clp protease adaptor protein ClpS [Xylella fastidiosa
           Ann-1]
 gi|71732514|gb|EAO34567.1| ATP-dependent Clp protease adaptor protein ClpS [Xylella fastidiosa
           Ann-1]
 gi|167964765|gb|ACA11775.1| conserved hypothetical protein [Xylella fastidiosa M12]
 gi|182631363|gb|ACB92139.1| ATP-dependent Clp protease adaptor protein ClpS [Xylella fastidiosa
           M23]
 gi|307579703|gb|ADN63672.1| ATP-dependent Clp protease adaptor protein ClpS [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 106

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 71/106 (66%), Gaps = 1/106 (0%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
           M++K + + DN L  E   ++KV  P  Y+VLL+ND+YTPM+FVI VLQ FF  D + A 
Sbjct: 1   MSQKTVHDQDNALLLETG-NTKVAPPPRYQVLLLNDDYTPMDFVIVVLQQFFAMDLKKAT 59

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            +ML VH +G G CG Y  E+AE KV QV  +SR HQ+PL C M+Q
Sbjct: 60  QVMLHVHTRGRGVCGFYTREVAESKVAQVNEFSRIHQHPLLCTMKQ 105


>gi|226939299|ref|YP_002794370.1| ATP-dependent Clp protease adaptor protein ClpS [Laribacter
           hongkongensis HLHK9]
 gi|226714223|gb|ACO73361.1| ATP-dependent Clp protease adaptor protein ClpS [Laribacter
           hongkongensis HLHK9]
          Length = 103

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 66/90 (73%), Gaps = 2/90 (2%)

Query: 51  SSKVRV--PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
            SK+R   P +Y+V+L+ND++TPM+FV+ VL+ FFY   E A  +MLK+H +G G CG +
Sbjct: 13  PSKIRTAPPPMYKVVLLNDDFTPMDFVVIVLERFFYMGREQATQVMLKIHTEGRGICGTF 72

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
             ++A  KV+QV +Y+R H++PLQC+ME+ 
Sbjct: 73  TRDVAATKVSQVRDYARTHEHPLQCVMEES 102


>gi|114320604|ref|YP_742287.1| ATP-dependent Clp protease adaptor protein ClpS [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|122311718|sp|Q0A8P0|CLPS_ALHEH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|114226998|gb|ABI56797.1| ATP-dependent Clp protease adaptor protein ClpS [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 106

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 42/87 (48%), Positives = 66/87 (75%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
             +V+ P L++V+++ND+YTPM+FV+ VLQ FF+ D   A  +ML VH +G G CGV++ 
Sbjct: 19  PPQVKRPPLFKVIILNDDYTPMDFVVEVLQKFFHMDRARATQVMLHVHTRGEGVCGVFSR 78

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           ++AE KVNQV ++SRQH++PL C +++
Sbjct: 79  DVAETKVNQVNDWSRQHEHPLMCTLKE 105


>gi|330446454|ref|ZP_08310106.1| specificity factor for ClpA-ClpP chaperone-protease complex
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490645|dbj|GAA04603.1| specificity factor for ClpA-ClpP chaperone-protease complex
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 106

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 62/85 (72%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           +V+ P +Y+V+L ND+YTPM+FVI VLQ FF  D E A  +ML VH++G   CG +  E+
Sbjct: 21  QVKPPSMYKVILNNDDYTPMDFVIDVLQTFFSMDLEKAAQLMLAVHYEGKAVCGTFTAEV 80

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           AE KV QVM Y+R+H++PL C ME+
Sbjct: 81  AETKVAQVMMYAREHEHPLLCTMEK 105


>gi|148977557|ref|ZP_01814136.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrionales
           bacterium SWAT-3]
 gi|145963208|gb|EDK28475.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrionales
           bacterium SWAT-3]
          Length = 106

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 64/87 (73%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
           ++KV+ P +Y V+L ND+YTPM+FVI +L+ FF  D E A  +MLKVH++G   CG Y+ 
Sbjct: 19  ATKVKPPAMYNVVLNNDDYTPMDFVIEILERFFSLDIEKATEVMLKVHYEGKAICGTYSA 78

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           EIAE KV QV  YS+++++PL C MEQ
Sbjct: 79  EIAETKVAQVTMYSKENEHPLLCTMEQ 105


>gi|90579120|ref|ZP_01234930.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio angustum
           S14]
 gi|90439953|gb|EAS65134.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio angustum
           S14]
          Length = 106

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 62/85 (72%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           +V+ P +Y+V+L ND+YTPM+FVI VLQ FF  D E A  +ML VH++G   CG +  E+
Sbjct: 21  QVKPPSMYKVILNNDDYTPMDFVIEVLQTFFSMDLEKAAQLMLAVHYEGKAICGTFTAEV 80

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           AE KV QVM Y+R+H++PL C ME+
Sbjct: 81  AETKVAQVMMYAREHEHPLLCTMEK 105


>gi|89073385|ref|ZP_01159909.1| ATP-dependent Clp protease adaptor protein ClpS [Photobacterium sp.
           SKA34]
 gi|89050872|gb|EAR56346.1| ATP-dependent Clp protease adaptor protein ClpS [Photobacterium sp.
           SKA34]
          Length = 106

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 62/85 (72%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           +V+ P +Y+V+L ND+YTPM+FVI VLQ FF  D E A  +ML VH++G   CG +  E+
Sbjct: 21  QVKPPSMYKVILNNDDYTPMDFVIEVLQTFFSMDLEKAAQLMLAVHYEGKAICGTFTAEV 80

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           AE KV QVM Y+R+H++PL C ME+
Sbjct: 81  AETKVAQVMMYAREHEHPLLCTMEK 105


>gi|212709755|ref|ZP_03317883.1| hypothetical protein PROVALCAL_00803 [Providencia alcalifaciens DSM
           30120]
 gi|212687566|gb|EEB47094.1| hypothetical protein PROVALCAL_00803 [Providencia alcalifaciens DSM
           30120]
          Length = 106

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/102 (49%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 36  GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
           G  + D     EV     ++ P +Y+VLL ND+YTPM+FV+ VLQ +F  D E A  IML
Sbjct: 6   GTFKTDTIFKDEVE--KALQPPSMYKVLLNNDDYTPMDFVVEVLQKYFSFDEERATQIML 63

Query: 96  KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            VH QG G CGVY  EIAE K  QV  ++R+H+YPL C +E+
Sbjct: 64  DVHFQGKGVCGVYTAEIAETKAAQVNAFAREHEYPLLCTIEK 105


>gi|120598597|ref|YP_963171.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella sp.
           W3-18-1]
 gi|146293324|ref|YP_001183748.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           putrefaciens CN-32]
 gi|166214746|sp|A4Y7L6|CLPS_SHEPC RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|166214748|sp|A1RIX2|CLPS_SHESW RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|120558690|gb|ABM24617.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella sp.
           W3-18-1]
 gi|145565014|gb|ABP75949.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           putrefaciens CN-32]
 gi|319426624|gb|ADV54698.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           putrefaciens 200]
          Length = 102

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 66/91 (72%)

Query: 47  EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
           E R  S++  P +Y+V+L ND+YTPM+FVI VLQ FF K+ + A  IML +HHQG G CG
Sbjct: 11  EERVESELMPPSMYKVILNNDDYTPMDFVIEVLQVFFRKNEQEATDIMLTIHHQGKGICG 70

Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           ++ + IAE KV QV  ++RQ+Q+PL C +E+
Sbjct: 71  IFPFGIAETKVIQVNQFARQNQHPLLCSLEK 101


>gi|323190703|gb|EFZ75972.1| ATP-dependent Clp protease adaptor protein ClpS family protein
           [Escherichia coli RN587/1]
          Length = 106

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 68/99 (68%), Gaps = 2/99 (2%)

Query: 39  EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           +FD   + +VR    ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A  +ML VH
Sbjct: 9   DFDQLAEEKVR--DALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVH 66

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 67  YQGKAICGVFTAEVAETKVTMVNKYARENEHPLLCTLEK 105


>gi|16759817|ref|NP_455434.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|16764306|ref|NP_459921.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|29142410|ref|NP_805752.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|56414003|ref|YP_151078.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|62179469|ref|YP_215886.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161614825|ref|YP_001588790.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167550381|ref|ZP_02344138.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|167992164|ref|ZP_02573262.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168230818|ref|ZP_02655876.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168236855|ref|ZP_02661913.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168240792|ref|ZP_02665724.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168263570|ref|ZP_02685543.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168466528|ref|ZP_02700390.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168819925|ref|ZP_02831925.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194444791|ref|YP_002040145.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194450386|ref|YP_002044938.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194470024|ref|ZP_03076008.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194734739|ref|YP_002114001.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197247594|ref|YP_002145862.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197264687|ref|ZP_03164761.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197362926|ref|YP_002142563.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|198243258|ref|YP_002214872.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|204929828|ref|ZP_03220849.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|207856339|ref|YP_002242990.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|213021515|ref|ZP_03335962.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
 gi|213052429|ref|ZP_03345307.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213419934|ref|ZP_03353000.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
 gi|213428022|ref|ZP_03360772.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhi str. E02-1180]
 gi|213581370|ref|ZP_03363196.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
 gi|213620715|ref|ZP_03373498.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
 gi|213649852|ref|ZP_03379905.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|213865354|ref|ZP_03387473.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
 gi|224582756|ref|YP_002636554.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|238913424|ref|ZP_04657261.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|289825000|ref|ZP_06544363.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|54036861|sp|P67650|CLPS_SALTI RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|54041058|sp|P67649|CLPS_SALTY RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|67460139|sp|Q57R56|CLPS_SALCH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|67460197|sp|Q5PGK0|CLPS_SALPA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|189082477|sp|A9N7Z5|CLPS_SALPB RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238689929|sp|B5BBT0|CLPS_SALPK RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238690018|sp|B5F127|CLPS_SALA4 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238690349|sp|B5FQ21|CLPS_SALDC RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238690424|sp|B5QYM8|CLPS_SALEP RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238690613|sp|B4TD06|CLPS_SALHS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238693573|sp|B4T0G6|CLPS_SALNS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238693662|sp|B4TRR1|CLPS_SALSV RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|254763823|sp|C0PXR3|CLPS_SALPC RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|25321103|pir||AH0609 conserved hypothetical protein STY0942 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16419456|gb|AAL19880.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16502110|emb|CAD05346.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29138040|gb|AAO69601.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56128260|gb|AAV77766.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62127102|gb|AAX64805.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161364189|gb|ABX67957.1| hypothetical protein SPAB_02578 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403454|gb|ACF63676.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194408690|gb|ACF68909.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194456388|gb|EDX45227.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194710241|gb|ACF89462.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195630880|gb|EDX49466.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197094403|emb|CAR59919.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197211297|gb|ACH48694.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197242942|gb|EDY25562.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197290191|gb|EDY29548.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197937774|gb|ACH75107.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|204320822|gb|EDZ06023.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205324512|gb|EDZ12351.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205329607|gb|EDZ16371.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205334903|gb|EDZ21667.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205340436|gb|EDZ27200.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205343076|gb|EDZ29840.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205347686|gb|EDZ34317.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|206708142|emb|CAR32435.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467283|gb|ACN45113.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|261246161|emb|CBG23965.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267992673|gb|ACY87558.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301157489|emb|CBW16979.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312911934|dbj|BAJ35908.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|320085181|emb|CBY94968.1| ATP-dependent Clp protease adapter protein clpS [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321223269|gb|EFX48338.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322616381|gb|EFY13290.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322619631|gb|EFY16506.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322622673|gb|EFY19518.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322628586|gb|EFY25373.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322631522|gb|EFY28278.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322637049|gb|EFY33752.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322641753|gb|EFY38389.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322644455|gb|EFY40995.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649575|gb|EFY46006.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322654123|gb|EFY50446.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658038|gb|EFY54305.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322663512|gb|EFY59714.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322670248|gb|EFY66388.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322671484|gb|EFY67606.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322676840|gb|EFY72907.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322682765|gb|EFY78784.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322686444|gb|EFY82426.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|322713939|gb|EFZ05510.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
 gi|323129211|gb|ADX16641.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|323196102|gb|EFZ81265.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323196752|gb|EFZ81896.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323202968|gb|EFZ88002.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323209009|gb|EFZ93946.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323211914|gb|EFZ96742.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323215154|gb|EFZ99899.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323222357|gb|EGA06735.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323226878|gb|EGA11061.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323229832|gb|EGA13955.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323233057|gb|EGA17153.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323240792|gb|EGA24834.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323243109|gb|EGA27129.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323247430|gb|EGA31386.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323251652|gb|EGA35519.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323257360|gb|EGA41058.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323261949|gb|EGA45515.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323267964|gb|EGA51443.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323271969|gb|EGA55384.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
 gi|326622625|gb|EGE28970.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 106

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 68/99 (68%), Gaps = 2/99 (2%)

Query: 39  EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           +FD  ++  VR    ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A  +ML VH
Sbjct: 9   DFDQLVEDSVR--DALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVH 66

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 67  YQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105


>gi|126740638|ref|ZP_01756325.1| ATP-dependent Clp protease, adaptor protein ClpS [Roseobacter sp.
           SK209-2-6]
 gi|126718439|gb|EBA15154.1| ATP-dependent Clp protease, adaptor protein ClpS [Roseobacter sp.
           SK209-2-6]
          Length = 121

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 69/100 (69%), Gaps = 2/100 (2%)

Query: 41  DNCLDSEV--RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           D+  D+ V  +   K + P  Y+VLL+ND+YTPMEFV+ VL+ FF   H  A  IML VH
Sbjct: 21  DDDADTGVLTKTRPKTKRPPRYKVLLLNDDYTPMEFVVMVLERFFSMTHAEAFDIMLTVH 80

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            +G+   GV+ +EIAE KV QVM+++ +HQ+PLQC ME++
Sbjct: 81  KKGLAVVGVFTHEIAETKVAQVMDFAGRHQHPLQCTMEKE 120


>gi|53804154|ref|YP_114226.1| ATP-dependent Clp protease adaptor protein ClpS [Methylococcus
           capsulatus str. Bath]
 gi|67460232|sp|Q607H2|CLPS_METCA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|53757915|gb|AAU92206.1| ATP-dependent Clp protease adaptor protein ClpS [Methylococcus
           capsulatus str. Bath]
          Length = 106

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 65/86 (75%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            KV+ P LY+V+L+ND++TPMEFV+HVL  FF  + E A  +ML VH +G+G CGV++ +
Sbjct: 20  PKVKRPPLYKVMLLNDDFTPMEFVVHVLMLFFGMNEEKATQVMLHVHTRGVGVCGVFSKD 79

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +AE KV QV  ++RQ+Q+PL C ME+
Sbjct: 80  VAETKVQQVNAHARQNQHPLLCTMEE 105


>gi|238897684|ref|YP_002923363.1| regulatory protein for ClpA substrate specificity [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465441|gb|ACQ67215.1| regulatory protein for ClpA substrate specificity [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 105

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 71/106 (66%), Gaps = 2/106 (1%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
           MNK G   F++ L+ +    S V+ P +Y+V+L ND+YTPMEFV+ VLQNFF  + E A 
Sbjct: 1   MNKNGGLNFEHLLNEQE--ISAVKPPDMYKVILNNDDYTPMEFVVDVLQNFFSYNLEQAT 58

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            +MLKVH+QG   CG +  E+AE KV  V  Y+R++++P  C +E+
Sbjct: 59  ALMLKVHYQGKAICGTFTAEVAETKVASVNQYARENEHPFLCTLEK 104


>gi|24374169|ref|NP_718212.1| hypothetical protein SO_2627 [Shewanella oneidensis MR-1]
 gi|37077213|sp|Q8EDW4|CLPS_SHEON RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|24348676|gb|AAN55656.1|AE015704_7 conserved hypothetical protein [Shewanella oneidensis MR-1]
          Length = 102

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 66/91 (72%)

Query: 47  EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
           E R  S++  P +Y+V+L ND+YTPM+FVI VLQ FF K+ + A  IML +HHQG G CG
Sbjct: 11  EERVESELMPPSMYKVILNNDDYTPMDFVIEVLQIFFRKNEQEATDIMLTIHHQGKGICG 70

Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           ++ + IAE KV QV  ++RQ+Q+PL C +E+
Sbjct: 71  IFPFGIAETKVIQVNQFARQNQHPLLCSLEK 101


>gi|127512494|ref|YP_001093691.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella loihica
           PV-4]
 gi|166214745|sp|A3QD84|CLPS_SHELP RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|126637789|gb|ABO23432.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella loihica
           PV-4]
          Length = 102

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 66/91 (72%)

Query: 47  EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
           E R  +++  P +Y+V+L ND+YTPM+FVI VLQ FF K+ + A  IML +HHQG G CG
Sbjct: 11  EERAETELMPPSMYKVILNNDDYTPMDFVIEVLQLFFNKNEQEATDIMLAIHHQGKGICG 70

Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           V+ + IAE KV QV  ++RQ+Q+PL C +E+
Sbjct: 71  VFPFGIAETKVAQVNQFARQNQHPLLCSLEK 101


>gi|94985574|ref|YP_604938.1| ATP-dependent Clp protease adaptor protein ClpS [Deinococcus
           geothermalis DSM 11300]
 gi|94555855|gb|ABF45769.1| ATP-dependent Clp protease adaptor protein ClpS [Deinococcus
           geothermalis DSM 11300]
          Length = 113

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 67/107 (62%), Gaps = 1/107 (0%)

Query: 31  RMNKK-GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
           RM ++ G         +  R  +  + P+LYRVLL+ND+YTPM+FV+ VLQ +F K    
Sbjct: 2   RMTRRDGEGRTGTLERAGTREQTTTQRPRLYRVLLLNDDYTPMDFVVEVLQTYFRKSETE 61

Query: 90  AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
           A+ IML VHH+G G  GVY  ++AE KV QV  ++R+  YPL+ + E
Sbjct: 62  AQLIMLAVHHKGQGVAGVYTRDVAETKVAQVTAHARRAGYPLRLVAE 108


>gi|88798703|ref|ZP_01114286.1| substrate modulator for ClpAP, directs protease activity towards
           aggregated proteins [Reinekea sp. MED297]
 gi|88778466|gb|EAR09658.1| substrate modulator for ClpAP, directs protease activity towards
           aggregated proteins [Reinekea sp. MED297]
          Length = 113

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 63/85 (74%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           +++ P LYRV+L+ND+YTPMEFV+H+L+ FF  + E A  +ML VH QG G CGVY  +I
Sbjct: 23  ELKRPSLYRVVLLNDDYTPMEFVVHILEQFFAMNREKATQVMLAVHTQGKGVCGVYTKDI 82

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           AE K   V +YSR++Q+PL C +E+
Sbjct: 83  AETKAALVNDYSRENQHPLLCEVEE 107


>gi|113869007|ref|YP_727496.1| ATP-dependent Clp protease adaptor protein ClpS [Ralstonia eutropha
           H16]
 gi|194290613|ref|YP_002006520.1| ATP-dependent clp protease adaptor protein clps [Cupriavidus
           taiwanensis LMG 19424]
 gi|123133653|sp|Q0K793|CLPS_RALEH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238692769|sp|B3R6C0|CLPS_CUPTR RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|113527783|emb|CAJ94128.1| ATP-dependent Clp protease adaptor protein [Ralstonia eutropha H16]
 gi|193224448|emb|CAQ70459.1| ATP-dependent Clp protease substrate specificity regulator
           [Cupriavidus taiwanensis LMG 19424]
          Length = 108

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 63/89 (70%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R    ++ P +++V+L+ND+YTPMEFV+ +LQ +F +D ETA  IML VH +G G CG+Y
Sbjct: 19  RKEQALKPPAMFKVVLLNDDYTPMEFVVMILQQYFSRDRETATQIMLTVHREGKGVCGIY 78

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             +IA  KV  V  ++RQ  +PLQC+ME+
Sbjct: 79  TRDIAATKVELVSTHARQAGHPLQCVMEE 107


>gi|167623651|ref|YP_001673945.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           halifaxensis HAW-EB4]
 gi|189082479|sp|B0TQ07|CLPS_SHEHH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|167353673|gb|ABZ76286.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           halifaxensis HAW-EB4]
          Length = 102

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 67/97 (69%)

Query: 41  DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
           +N    E    ++ + P +Y+V+L ND+YTPM+FVI +LQ FF KD + A  IML +HH+
Sbjct: 5   ENIEQIEESVEAEFKQPSMYKVILNNDDYTPMDFVIEILQLFFKKDEQQATEIMLAIHHK 64

Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           G G CG+Y + IAE KV QV  ++RQ+Q+PL C +E+
Sbjct: 65  GKGICGIYPFGIAETKVAQVNQFARQNQHPLLCSLEE 101


>gi|254475794|ref|ZP_05089180.1| ATP-dependent Clp protease adaptor protein ClpS [Ruegeria sp. R11]
 gi|214030037|gb|EEB70872.1| ATP-dependent Clp protease adaptor protein ClpS [Ruegeria sp. R11]
          Length = 107

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 64/87 (73%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            K + P  Y+VLL+ND+YTPMEFV+ VL+ FF   H  A  +ML VH +G+   GV+++E
Sbjct: 20  PKTQRPPRYKVLLLNDDYTPMEFVVMVLERFFNMTHAEAFEVMLTVHKKGVAVVGVFSHE 79

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IAE KV QVM+++ +HQ+PLQC ME++
Sbjct: 80  IAETKVGQVMDFAHRHQHPLQCTMEKE 106


>gi|161503926|ref|YP_001571038.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|189082476|sp|A9MI06|CLPS_SALAR RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|160865273|gb|ABX21896.1| hypothetical protein SARI_02017 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 106

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 69/99 (69%), Gaps = 2/99 (2%)

Query: 39  EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           +FD  ++ ++R    ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A  +ML VH
Sbjct: 9   DFDQLVEDDLR--DALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVH 66

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 67  YQGKAICGVFTAEVAETKVEMVNQYARENEHPLLCTLEK 105


>gi|228311827|pdb|2W9R|A Chain A, Structural Basis Of N-End Rule Substrate Recognition In
           Escherichia Coli By The Clpap Adaptor Protein Clps
 gi|228311836|pdb|2WA9|A Chain A, Structural Basis Of N-End Rule Substrate Recognition In
           Escherichia Coli By The Clpap Adaptor Protein Clps - Trp
           Peptide Structure
 gi|228311837|pdb|2WA9|B Chain B, Structural Basis Of N-End Rule Substrate Recognition In
           Escherichia Coli By The Clpap Adaptor Protein Clps - Trp
           Peptide Structure
 gi|228311838|pdb|2WA9|C Chain C, Structural Basis Of N-End Rule Substrate Recognition In
           Escherichia Coli By The Clpap Adaptor Protein Clps - Trp
           Peptide Structure
 gi|228311839|pdb|2WA9|D Chain D, Structural Basis Of N-End Rule Substrate Recognition In
           Escherichia Coli By The Clpap Adaptor Protein Clps - Trp
           Peptide Structure
 gi|228311840|pdb|2WA9|E Chain E, Structural Basis Of N-End Rule Substrate Recognition In
           Escherichia Coli By The Clpap Adaptor Protein Clps - Trp
           Peptide Structure
 gi|228311841|pdb|2WA9|F Chain F, Structural Basis Of N-End Rule Substrate Recognition In
           Escherichia Coli By The Clpap Adaptor Protein Clps - Trp
           Peptide Structure
 gi|228311842|pdb|2WA9|G Chain G, Structural Basis Of N-End Rule Substrate Recognition In
           Escherichia Coli By The Clpap Adaptor Protein Clps - Trp
           Peptide Structure
          Length = 108

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 68/99 (68%), Gaps = 2/99 (2%)

Query: 39  EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           +FD   + +VR    ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A  +ML VH
Sbjct: 9   DFDQLAEEKVR--DALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVH 66

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 67  YQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105


>gi|46580012|ref|YP_010820.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120602577|ref|YP_966977.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
           vulgaris DP4]
 gi|67460332|sp|Q72BN4|CLPS_DESVH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|166214734|sp|A1VDN4|CLPS_DESVV RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|46449428|gb|AAS96079.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120562806|gb|ABM28550.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
           vulgaris DP4]
 gi|311233989|gb|ADP86843.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
           vulgaris RCH1]
          Length = 104

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/93 (49%), Positives = 61/93 (65%)

Query: 45  DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
           DS++     VR+P++YRVLL ND+YT MEFV+ +L   F K  E A  IML VH  G+GE
Sbjct: 11  DSDILVEDDVRLPRMYRVLLHNDDYTTMEFVVSILVEVFRKTAEQATAIMLAVHRDGVGE 70

Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           CGVY +E+AE K   V   +R+  YPL+C  E+
Sbjct: 71  CGVYTFEVAETKAAIVHARARREGYPLRCSTEE 103


>gi|193071768|ref|ZP_03052664.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           E110019]
 gi|192954925|gb|EDV85432.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           E110019]
          Length = 106

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 68/99 (68%), Gaps = 2/99 (2%)

Query: 39  EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           +FD   + +VR    ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A  +ML VH
Sbjct: 9   DFDQVAEEKVR--DALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVH 66

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 67  YQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105


>gi|228311830|pdb|2WA8|A Chain A, Structural Basis Of N-End Rule Substrate Recognition In
           Escherichia Coli By The Clpap Adaptor Protein Clps - The
           Phe Peptide Structure
 gi|228311832|pdb|2WA8|C Chain C, Structural Basis Of N-End Rule Substrate Recognition In
           Escherichia Coli By The Clpap Adaptor Protein Clps - The
           Phe Peptide Structure
          Length = 107

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 68/99 (68%), Gaps = 2/99 (2%)

Query: 39  EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           +FD   + +VR    ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A  +ML VH
Sbjct: 9   DFDQLAEEKVR--DALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVH 66

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 67  YQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105


>gi|157146439|ref|YP_001453758.1| ATP-dependent Clp protease adaptor protein ClpS [Citrobacter koseri
           ATCC BAA-895]
 gi|166214733|sp|A8AIK9|CLPS_CITK8 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|157083644|gb|ABV13322.1| hypothetical protein CKO_02199 [Citrobacter koseri ATCC BAA-895]
          Length = 106

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 68/99 (68%), Gaps = 2/99 (2%)

Query: 39  EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           +FD   + +VR    ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A  +ML VH
Sbjct: 9   DFDQLAEDKVR--DALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVH 66

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 67  YQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105


>gi|329298246|ref|ZP_08255582.1| ATP-dependent Clp protease adaptor protein ClpS [Plautia stali
           symbiont]
          Length = 106

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
           N      F+   + +VR    ++ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A  
Sbjct: 3   NTNDWLNFERLAEDKVR--EGLKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDVERATQ 60

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +MLKVH+ G   CGV+  E+AE KV QV NY+R++Q+PL C +E+
Sbjct: 61  LMLKVHYHGKAICGVFTAEVAETKVAQVNNYARENQHPLLCTLEK 105


>gi|15800639|ref|NP_286653.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 EDL933]
 gi|15830221|ref|NP_308994.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. Sakai]
 gi|16128849|ref|NP_415402.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           str. K-12 substr. MG1655]
 gi|24112257|ref|NP_706767.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella flexneri
           2a str. 301]
 gi|26246907|ref|NP_752947.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           CFT073]
 gi|30062369|ref|NP_836540.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella flexneri
           2a str. 2457T]
 gi|74311440|ref|YP_309859.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella sonnei
           Ss046]
 gi|82543368|ref|YP_407315.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella boydii
           Sb227]
 gi|82777596|ref|YP_403945.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella
           dysenteriae Sd197]
 gi|89107732|ref|AP_001512.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           str. K-12 substr. W3110]
 gi|91209918|ref|YP_539904.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           UTI89]
 gi|110641082|ref|YP_668812.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           536]
 gi|110804883|ref|YP_688403.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella flexneri
           5 str. 8401]
 gi|117623059|ref|YP_851972.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           APEC O1]
 gi|157156472|ref|YP_001462078.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           E24377A]
 gi|157160404|ref|YP_001457722.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           HS]
 gi|168752462|ref|ZP_02777484.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4113]
 gi|168759050|ref|ZP_02784057.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4401]
 gi|168769874|ref|ZP_02794881.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4486]
 gi|168777871|ref|ZP_02802878.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4196]
 gi|168783792|ref|ZP_02808799.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4076]
 gi|168789133|ref|ZP_02814140.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC869]
 gi|168802712|ref|ZP_02827719.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC508]
 gi|170020716|ref|YP_001725670.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           ATCC 8739]
 gi|170080540|ref|YP_001729860.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           str. K-12 substr. DH10B]
 gi|170683903|ref|YP_001744326.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           SMS-3-5]
 gi|187732054|ref|YP_001880921.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella boydii
           CDC 3083-94]
 gi|188493236|ref|ZP_03000506.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           53638]
 gi|191167602|ref|ZP_03029413.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           B7A]
 gi|191172151|ref|ZP_03033695.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           F11]
 gi|193064650|ref|ZP_03045729.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           E22]
 gi|194428349|ref|ZP_03060890.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           B171]
 gi|194433088|ref|ZP_03065370.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella
           dysenteriae 1012]
 gi|194438739|ref|ZP_03070826.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           101-1]
 gi|195939544|ref|ZP_03084926.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4024]
 gi|208807982|ref|ZP_03250319.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4206]
 gi|208815975|ref|ZP_03257154.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4045]
 gi|208822627|ref|ZP_03262946.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4042]
 gi|209399503|ref|YP_002269555.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4115]
 gi|209918130|ref|YP_002292214.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           SE11]
 gi|217326428|ref|ZP_03442512.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. TW14588]
 gi|218553467|ref|YP_002386380.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           IAI1]
 gi|218557785|ref|YP_002390698.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           S88]
 gi|218688663|ref|YP_002396875.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           ED1a]
 gi|218694355|ref|YP_002402022.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           55989]
 gi|218700603|ref|YP_002408232.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           IAI39]
 gi|218704310|ref|YP_002411829.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           UMN026]
 gi|227884153|ref|ZP_04001958.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           83972]
 gi|238900140|ref|YP_002925936.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           BW2952]
 gi|253774089|ref|YP_003036920.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160996|ref|YP_003044104.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli B
           str. REL606]
 gi|254792082|ref|YP_003076919.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. TW14359]
 gi|256020998|ref|ZP_05434863.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella sp. D9]
 gi|256023492|ref|ZP_05437357.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia sp.
           4_1_40B]
 gi|260843132|ref|YP_003220910.1| regulatory protein ClpS for ClpA substrate specificity [Escherichia
           coli O103:H2 str. 12009]
 gi|260854173|ref|YP_003228064.1| regulatory protein ClpS for ClpA substrate specificity [Escherichia
           coli O26:H11 str. 11368]
 gi|260867054|ref|YP_003233456.1| regulatory protein ClpS for ClpA substrate specificity [Escherichia
           coli O111:H- str. 11128]
 gi|261225537|ref|ZP_05939818.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261258494|ref|ZP_05951027.1| regulatory protein ClpS for ClpA substrate specificity [Escherichia
           coli O157:H7 str. FRIK966]
 gi|291281885|ref|YP_003498703.1| ATP-dependent Clp protease adapter protein clpS [Escherichia coli
           O55:H7 str. CB9615]
 gi|293404189|ref|ZP_06648183.1| ClpS [Escherichia coli FVEC1412]
 gi|293409260|ref|ZP_06652836.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293414164|ref|ZP_06656813.1| ATP-dependent Clp protease adapter protein ClpS [Escherichia coli
           B185]
 gi|293433179|ref|ZP_06661607.1| ATP-dependent Clp protease adapter protein ClpS [Escherichia coli
           B088]
 gi|297516224|ref|ZP_06934610.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           OP50]
 gi|298379970|ref|ZP_06989575.1| ATP-dependent Clp protease adapter protein ClpS [Escherichia coli
           FVEC1302]
 gi|300817017|ref|ZP_07097236.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 107-1]
 gi|300823619|ref|ZP_07103746.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 119-7]
 gi|300895696|ref|ZP_07114292.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 198-1]
 gi|300902417|ref|ZP_07120399.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 84-1]
 gi|300921087|ref|ZP_07137471.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 115-1]
 gi|300922550|ref|ZP_07138651.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 182-1]
 gi|300928422|ref|ZP_07143955.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 187-1]
 gi|300935725|ref|ZP_07150693.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 21-1]
 gi|300950109|ref|ZP_07164055.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 116-1]
 gi|300954436|ref|ZP_07166888.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 175-1]
 gi|300978555|ref|ZP_07174308.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 45-1]
 gi|300991762|ref|ZP_07179625.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 200-1]
 gi|301020523|ref|ZP_07184607.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 69-1]
 gi|301024394|ref|ZP_07188081.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 196-1]
 gi|301051189|ref|ZP_07198019.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 185-1]
 gi|301305345|ref|ZP_07211440.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 124-1]
 gi|301328605|ref|ZP_07221666.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 78-1]
 gi|301646325|ref|ZP_07246213.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 146-1]
 gi|306812669|ref|ZP_07446862.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           NC101]
 gi|307137509|ref|ZP_07496865.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           H736]
 gi|307311731|ref|ZP_07591371.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           W]
 gi|309783999|ref|ZP_07678643.1| ATP-dependent Clp protease adaptor ClpS family protein [Shigella
           dysenteriae 1617]
 gi|309795322|ref|ZP_07689740.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 145-7]
 gi|312969050|ref|ZP_07783257.1| ATP-dependent Clp protease adaptor ClpS family protein [Escherichia
           coli 2362-75]
 gi|312971008|ref|ZP_07785187.1| ATP-dependent Clp protease adaptor ClpS family protein [Escherichia
           coli 1827-70]
 gi|331641402|ref|ZP_08342537.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           H736]
 gi|331646149|ref|ZP_08347252.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           M605]
 gi|331651900|ref|ZP_08352919.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           M718]
 gi|331656953|ref|ZP_08357915.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           TA206]
 gi|331662295|ref|ZP_08363218.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           TA143]
 gi|331667255|ref|ZP_08368120.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           TA271]
 gi|331676669|ref|ZP_08377365.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           H591]
 gi|331682390|ref|ZP_08383009.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           H299]
 gi|67462206|sp|P0A8Q6|CLPS_ECOLI RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|67462207|sp|P0A8Q7|CLPS_ECOL6 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|67462208|sp|P0A8Q8|CLPS_ECO57 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|67462209|sp|P0A8Q9|CLPS_SHIFL RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|122424438|sp|Q1RE41|CLPS_ECOUT RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|123049335|sp|Q0TJG8|CLPS_ECOL5 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|123343208|sp|Q0T8P4|CLPS_SHIF8 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|123560128|sp|Q323M1|CLPS_SHIBS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|123562126|sp|Q32E01|CLPS_SHIDS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|123617606|sp|Q3Z3N8|CLPS_SHISS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|158512538|sp|A1A9B8|CLPS_ECOK1 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|167008653|sp|A7ZJU9|CLPS_ECO24 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|167008654|sp|A7ZYI5|CLPS_ECOHS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|189082474|sp|B1IWP1|CLPS_ECOLC RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|226706563|sp|B7MHI7|CLPS_ECO45 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|226706564|sp|B7NM96|CLPS_ECO7I RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|226706565|sp|B7M809|CLPS_ECO8A RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|226706566|sp|B7NAN2|CLPS_ECOLU RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|226706567|sp|B1LKM9|CLPS_ECOSM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|229889820|sp|B1X822|CLPS_ECODH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238066650|sp|B5YSH7|CLPS_ECO5E RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238066651|sp|B6I8V2|CLPS_ECOSE RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238691691|sp|B2TUJ7|CLPS_SHIB3 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|254763816|sp|B7LD74|CLPS_ECO55 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|254763817|sp|B7MRT8|CLPS_ECO81 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|259491246|sp|C4ZY53|CLPS_ECOBW RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|27573865|pdb|1MBU|C Chain C, Crystal Structure Analysis Of Clpsn Heterodimer
 gi|27573866|pdb|1MBU|D Chain D, Crystal Structure Analysis Of Clpsn Heterodimer
 gi|27573868|pdb|1MBV|B Chain B, Crystal Structure Analysis Of Clpsn Heterodimer Tetragonal
           Form
 gi|27573871|pdb|1MBX|C Chain C, Crystal Structure Analysis Of Clpsn With Transition Metal
           Ion Bound
 gi|27573872|pdb|1MBX|D Chain D, Crystal Structure Analysis Of Clpsn With Transition Metal
           Ion Bound
 gi|61679804|pdb|1R6O|C Chain C, Atp-Dependent Clp Protease Atp-Binding Subunit ClpaATP-
           Dependent Clp Protease Adaptor Protein Clps
 gi|61679805|pdb|1R6O|D Chain D, Atp-Dependent Clp Protease Atp-Binding Subunit ClpaATP-
           Dependent Clp Protease Adaptor Protein Clps
 gi|61679808|pdb|1R6Q|C Chain C, Clpns With Fragments
 gi|61679809|pdb|1R6Q|D Chain D, Clpns With Fragments
 gi|12513911|gb|AAG55263.1|AE005269_7 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|26107307|gb|AAN79490.1|AE016758_94 Protein yljA [Escherichia coli CFT073]
 gi|1787108|gb|AAC73968.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           str. K-12 substr. MG1655]
 gi|4062464|dbj|BAA35600.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           str. K12 substr. W3110]
 gi|13360426|dbj|BAB34390.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|24051108|gb|AAN42474.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30040614|gb|AAP16346.1| hypothetical protein S0881 [Shigella flexneri 2a str. 2457T]
 gi|73854917|gb|AAZ87624.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|81241744|gb|ABB62454.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|81244779|gb|ABB65487.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|91071492|gb|ABE06373.1| ATP-dependent Clp protease adaptor protein [Escherichia coli UTI89]
 gi|110342674|gb|ABG68911.1| hypothetical protein YljA [Escherichia coli 536]
 gi|110614431|gb|ABF03098.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|115512183|gb|ABJ00258.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|157066084|gb|ABV05339.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           HS]
 gi|157078502|gb|ABV18210.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           E24377A]
 gi|169755644|gb|ACA78343.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           ATCC 8739]
 gi|169888375|gb|ACB02082.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           str. K-12 substr. DH10B]
 gi|170521621|gb|ACB19799.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           SMS-3-5]
 gi|187429046|gb|ACD08320.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella boydii
           CDC 3083-94]
 gi|187766992|gb|EDU30836.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4196]
 gi|188013696|gb|EDU51818.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4113]
 gi|188488435|gb|EDU63538.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           53638]
 gi|188998902|gb|EDU67888.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4076]
 gi|189354287|gb|EDU72706.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4401]
 gi|189361171|gb|EDU79590.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4486]
 gi|189371156|gb|EDU89572.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC869]
 gi|189375364|gb|EDU93780.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC508]
 gi|190902363|gb|EDV62101.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           B7A]
 gi|190907678|gb|EDV67273.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           F11]
 gi|192927707|gb|EDV82322.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           E22]
 gi|194413564|gb|EDX29845.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           B171]
 gi|194418585|gb|EDX34672.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella
           dysenteriae 1012]
 gi|194422371|gb|EDX38371.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           101-1]
 gi|208727783|gb|EDZ77384.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4206]
 gi|208732623|gb|EDZ81311.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4045]
 gi|208738112|gb|EDZ85795.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4042]
 gi|209160903|gb|ACI38336.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4115]
 gi|209775128|gb|ACI85876.1| hypothetical protein ECs0967 [Escherichia coli]
 gi|209775130|gb|ACI85877.1| hypothetical protein ECs0967 [Escherichia coli]
 gi|209775132|gb|ACI85878.1| hypothetical protein ECs0967 [Escherichia coli]
 gi|209775134|gb|ACI85879.1| hypothetical protein ECs0967 [Escherichia coli]
 gi|209775136|gb|ACI85880.1| hypothetical protein ECs0967 [Escherichia coli]
 gi|209911389|dbj|BAG76463.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|217322649|gb|EEC31073.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. TW14588]
 gi|218351087|emb|CAU96791.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           55989]
 gi|218360235|emb|CAQ97785.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           IAI1]
 gi|218364554|emb|CAR02238.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           S88]
 gi|218370589|emb|CAR18396.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           IAI39]
 gi|218426227|emb|CAR07052.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           ED1a]
 gi|218431407|emb|CAR12285.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           UMN026]
 gi|222032610|emb|CAP75349.1| ATP-dependent Clp protease adaptor protein clpS [Escherichia coli
           LF82]
 gi|227838905|gb|EEJ49371.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           83972]
 gi|238863441|gb|ACR65439.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           BW2952]
 gi|242376696|emb|CAQ31409.1| specificity factor for ClpA-ClpP chaperone-protease complex
           [Escherichia coli BL21(DE3)]
 gi|253325133|gb|ACT29735.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972897|gb|ACT38568.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli B
           str. REL606]
 gi|253977111|gb|ACT42781.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           BL21(DE3)]
 gi|254591482|gb|ACT70843.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           O157:H7 str. TW14359]
 gi|257752822|dbj|BAI24324.1| regulatory protein ClpS for ClpA substrate specificity [Escherichia
           coli O26:H11 str. 11368]
 gi|257758279|dbj|BAI29776.1| regulatory protein ClpS for ClpA substrate specificity [Escherichia
           coli O103:H2 str. 12009]
 gi|257763410|dbj|BAI34905.1| regulatory protein ClpS for ClpA substrate specificity [Escherichia
           coli O111:H- str. 11128]
 gi|260449972|gb|ACX40394.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           DH1]
 gi|281600210|gb|ADA73194.1| ATP-dependent Clp protease adapter protein clpS [Shigella flexneri
           2002017]
 gi|284920735|emb|CBG33798.1| ATP-dependent Clp protease adaptor protein [Escherichia coli 042]
 gi|290761758|gb|ADD55719.1| ATP-dependent Clp protease adapter protein clpS [Escherichia coli
           O55:H7 str. CB9615]
 gi|291323998|gb|EFE63420.1| ATP-dependent Clp protease adapter protein ClpS [Escherichia coli
           B088]
 gi|291428775|gb|EFF01800.1| ClpS [Escherichia coli FVEC1412]
 gi|291434222|gb|EFF07195.1| ATP-dependent Clp protease adapter protein ClpS [Escherichia coli
           B185]
 gi|291469728|gb|EFF12212.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294493941|gb|ADE92697.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           IHE3034]
 gi|298279668|gb|EFI21176.1| ATP-dependent Clp protease adapter protein ClpS [Escherichia coli
           FVEC1302]
 gi|299880401|gb|EFI88612.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 196-1]
 gi|300297210|gb|EFJ53595.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 185-1]
 gi|300305516|gb|EFJ60036.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 200-1]
 gi|300318586|gb|EFJ68370.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 175-1]
 gi|300360365|gb|EFJ76235.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 198-1]
 gi|300398656|gb|EFJ82194.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 69-1]
 gi|300405449|gb|EFJ88987.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 84-1]
 gi|300409634|gb|EFJ93172.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 45-1]
 gi|300411938|gb|EFJ95248.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 115-1]
 gi|300421096|gb|EFK04407.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 182-1]
 gi|300450524|gb|EFK14144.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 116-1]
 gi|300459088|gb|EFK22581.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 21-1]
 gi|300463585|gb|EFK27078.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 187-1]
 gi|300523819|gb|EFK44888.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 119-7]
 gi|300530369|gb|EFK51431.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 107-1]
 gi|300839363|gb|EFK67123.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 124-1]
 gi|300844997|gb|EFK72757.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 78-1]
 gi|301075428|gb|EFK90234.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 146-1]
 gi|305853432|gb|EFM53871.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           NC101]
 gi|306908286|gb|EFN38785.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           W]
 gi|307552724|gb|ADN45499.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           ABU 83972]
 gi|307627693|gb|ADN71997.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           UM146]
 gi|308120972|gb|EFO58234.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 145-7]
 gi|308928142|gb|EFP73605.1| ATP-dependent Clp protease adaptor ClpS family protein [Shigella
           dysenteriae 1617]
 gi|309701158|emb|CBJ00458.1| ATP-dependent Clp protease adaptor protein [Escherichia coli ETEC
           H10407]
 gi|310336769|gb|EFQ01936.1| ATP-dependent Clp protease adaptor ClpS family protein [Escherichia
           coli 1827-70]
 gi|312286452|gb|EFR14365.1| ATP-dependent Clp protease adaptor ClpS family protein [Escherichia
           coli 2362-75]
 gi|312945399|gb|ADR26226.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|313650206|gb|EFS14618.1| ATP-dependent Clp protease adaptor ClpS family protein [Shigella
           flexneri 2a str. 2457T]
 gi|315060167|gb|ADT74494.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           W]
 gi|315135530|dbj|BAJ42689.1| ATP-dependent Clp protease adapter protein clpS [Escherichia coli
           DH1]
 gi|315257919|gb|EFU37887.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 85-1]
 gi|315287285|gb|EFU46696.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 110-3]
 gi|315291075|gb|EFU50438.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 153-1]
 gi|315296657|gb|EFU55952.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 16-3]
 gi|315619193|gb|EFU99772.1| ATP-dependent Clp protease adaptor ClpS family protein [Escherichia
           coli 3431]
 gi|320175322|gb|EFW50428.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella
           dysenteriae CDC 74-1112]
 gi|320180599|gb|EFW55528.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella boydii
           ATCC 9905]
 gi|320183180|gb|EFW58038.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella flexneri
           CDC 796-83]
 gi|320192633|gb|EFW67274.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC1212]
 gi|320196624|gb|EFW71247.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           WV_060327]
 gi|320202276|gb|EFW76847.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           EC4100B]
 gi|320637752|gb|EFX07544.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. G5101]
 gi|320642875|gb|EFX12076.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H- str. 493-89]
 gi|320648332|gb|EFX16987.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H- str. H 2687]
 gi|320654170|gb|EFX22238.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320659794|gb|EFX27350.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320664264|gb|EFX31415.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323155745|gb|EFZ41914.1| ATP-dependent Clp protease adaptor ClpS family protein [Escherichia
           coli EPECa14]
 gi|323159506|gb|EFZ45486.1| ATP-dependent Clp protease adaptor protein ClpS family protein
           [Escherichia coli E128010]
 gi|323165818|gb|EFZ51604.1| ATP-dependent Clp protease adaptor ClpS family protein [Shigella
           sonnei 53G]
 gi|323172148|gb|EFZ57786.1| ATP-dependent Clp protease adaptor protein ClpS family protein
           [Escherichia coli LT-68]
 gi|323175497|gb|EFZ61092.1| ATP-dependent Clp protease adaptor protein ClpS family protein
           [Escherichia coli 1180]
 gi|323185154|gb|EFZ70519.1| ATP-dependent Clp protease adaptor protein ClpS family protein
           [Escherichia coli 1357]
 gi|323379276|gb|ADX51544.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           KO11]
 gi|323937988|gb|EGB34250.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           E1520]
 gi|323942798|gb|EGB38963.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           E482]
 gi|323947161|gb|EGB43171.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           H120]
 gi|323953415|gb|EGB49281.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           H252]
 gi|323958183|gb|EGB53892.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           H263]
 gi|323962994|gb|EGB58566.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           H489]
 gi|323967317|gb|EGB62740.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           M863]
 gi|323969619|gb|EGB64906.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           TA007]
 gi|323976732|gb|EGB71820.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           TW10509]
 gi|324009833|gb|EGB79052.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 57-2]
 gi|324013007|gb|EGB82226.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 60-1]
 gi|324019029|gb|EGB88248.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 117-3]
 gi|324116095|gb|EGC10019.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           E1167]
 gi|326338224|gb|EGD62053.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. 1125]
 gi|326346201|gb|EGD69939.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. 1044]
 gi|327253669|gb|EGE65298.1| ATP-dependent Clp protease adaptor protein ClpS family protein
           [Escherichia coli STEC_7v]
 gi|330910663|gb|EGH39173.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           AA86]
 gi|331038200|gb|EGI10420.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           H736]
 gi|331044901|gb|EGI17028.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           M605]
 gi|331050178|gb|EGI22236.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           M718]
 gi|331055201|gb|EGI27210.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           TA206]
 gi|331060717|gb|EGI32681.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           TA143]
 gi|331065611|gb|EGI37504.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           TA271]
 gi|331075358|gb|EGI46656.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           H591]
 gi|331080021|gb|EGI51200.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           H299]
 gi|332091077|gb|EGI96167.1| ATP-dependent Clp protease adaptor protein ClpS family protein
           [Shigella dysenteriae 155-74]
 gi|332097186|gb|EGJ02169.1| ATP-dependent Clp protease adaptor protein ClpS family protein
           [Shigella boydii 3594-74]
 gi|332104576|gb|EGJ07922.1| regulatory protein for ClpA substrate specificity [Shigella sp. D9]
          Length = 106

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 68/99 (68%), Gaps = 2/99 (2%)

Query: 39  EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           +FD   + +VR    ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A  +ML VH
Sbjct: 9   DFDQLAEEKVR--DALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVH 66

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 67  YQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105


>gi|237707137|ref|ZP_04537618.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia sp.
           3_2_53FAA]
 gi|226898347|gb|EEH84606.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia sp.
           3_2_53FAA]
          Length = 106

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 68/99 (68%), Gaps = 2/99 (2%)

Query: 39  EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           +FD   + +VR    ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A  +ML VH
Sbjct: 9   DFDQLAEEKVR--DALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVH 66

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 67  YQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105


>gi|56459784|ref|YP_155065.1| ATP-dependent Clp protease adaptor protein ClpS [Idiomarina
           loihiensis L2TR]
 gi|67460203|sp|Q5R0C3|CLPS_IDILO RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|56178794|gb|AAV81516.1| Uncharacterized conserved protein [Idiomarina loihiensis L2TR]
          Length = 102

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 71/102 (69%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           +++FD+   S+     +++ P +Y+V++ ND+YTPM+FVI VL  FF  D E A   ML+
Sbjct: 1   MSQFDHQHLSDTEEKQELKPPSMYKVIINNDDYTPMDFVIEVLMRFFKMDQERATDTMLQ 60

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           VH++G   CGVY+ EIAE KV QV  Y+R++Q+PL C MEQ+
Sbjct: 61  VHYKGKAVCGVYSAEIAETKVVQVNQYARENQHPLLCTMEQE 102


>gi|109898690|ref|YP_661945.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudoalteromonas
           atlantica T6c]
 gi|123064521|sp|Q15T97|CLPS_PSEA6 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|109700971|gb|ABG40891.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudoalteromonas
           atlantica T6c]
 gi|332173682|gb|AEE22936.1| ATP-dependent Clp protease adaptor protein ClpS [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 106

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/85 (57%), Positives = 60/85 (70%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           K+  P +Y+VLL ND+YTPM+FVI VL  FF  D E A  IML VH++G   CGVY  EI
Sbjct: 21  KLAPPPMYKVLLNNDDYTPMDFVIEVLVRFFNLDSEKAHQIMLTVHYRGRAVCGVYTAEI 80

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           AE KV QV  Y+++HQ+PL C MEQ
Sbjct: 81  AETKVMQVTQYAKKHQHPLMCTMEQ 105


>gi|37680507|ref|NP_935116.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio vulnificus
           YJ016]
 gi|320155836|ref|YP_004188215.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio vulnificus
           MO6-24/O]
 gi|326423943|ref|NP_760980.2| ATP-dependent Clp protease adaptor protein ClpS [Vibrio vulnificus
           CMCP6]
 gi|39930932|sp|Q7MJ40|CLPS_VIBVY RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|37199255|dbj|BAC95087.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
 gi|319931148|gb|ADV86012.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio vulnificus
           MO6-24/O]
 gi|319999322|gb|AAO10507.2| ATP-dependent Clp protease adaptor protein clpS [Vibrio vulnificus
           CMCP6]
          Length = 106

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 71/105 (67%), Gaps = 3/105 (2%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
           N + I    + L+ E+   ++++ PK Y V+L ND+YTPM+FVI VL+ FF  D + A  
Sbjct: 4   NFEWITPDSDLLEKEI---TQIQPPKKYNVVLNNDDYTPMDFVIDVLERFFSHDLDKATQ 60

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           IMLKVH++G   CG Y+ EIAE KV QV  YSR++++PL C MEQ
Sbjct: 61  IMLKVHYEGKAICGTYSAEIAETKVAQVTMYSRENEHPLLCTMEQ 105


>gi|183598326|ref|ZP_02959819.1| hypothetical protein PROSTU_01717 [Providencia stuartii ATCC 25827]
 gi|188020501|gb|EDU58541.1| hypothetical protein PROSTU_01717 [Providencia stuartii ATCC 25827]
          Length = 106

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 70/105 (66%), Gaps = 4/105 (3%)

Query: 37  IAEFDNCLDSEVRFSSKV----RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
           +++F     ++V F  +V    + P +Y+V+L ND+YTPM+FV+ VLQ +F  D E A  
Sbjct: 1   MSDFLGTFKTDVVFKDEVEQVLQPPSMYKVILNNDDYTPMDFVVEVLQKYFSFDEERATQ 60

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           IML VH QG G CG++  E+AE K  QV +Y+R+H+YPL C +E+
Sbjct: 61  IMLDVHFQGKGVCGIFTAEVAETKAAQVNSYAREHEYPLLCTIEK 105


>gi|163751226|ref|ZP_02158454.1| hypothetical protein KT99_13792 [Shewanella benthica KT99]
 gi|161328940|gb|EDQ00014.1| hypothetical protein KT99_13792 [Shewanella benthica KT99]
          Length = 102

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 66/91 (72%)

Query: 47  EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
           E R  S++  P +Y+V+L ND+YTPM+FVI +LQ FF K+ + A  IML +HHQG G CG
Sbjct: 11  EERVESELMPPSMYKVVLNNDDYTPMDFVIEILQLFFKKNEQEATDIMLAIHHQGKGICG 70

Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           V+ + IAE KV QV  ++RQ+++PL C +E+
Sbjct: 71  VFPFGIAETKVAQVNQFARQNEHPLLCSLEK 101


>gi|254468722|ref|ZP_05082128.1| ATP-dependent Clp protease adaptor protein ClpS [beta
           proteobacterium KB13]
 gi|207087532|gb|EDZ64815.1| ATP-dependent Clp protease adaptor protein ClpS [beta
           proteobacterium KB13]
          Length = 102

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 72/101 (71%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           +A+ D+ +  E +   K  +PK+++VL++ND++TPMEFV+ V+   F K  + A  IMLK
Sbjct: 1   MAQEDHKIIVEPKKKVKPNLPKMFKVLVLNDDFTPMEFVVDVIMKVFTKTEDEATRIMLK 60

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +H +G+  CG+Y YEIAE K+NQV+  +++ Q+PLQ I+E+
Sbjct: 61  IHTEGMAICGIYPYEIAETKMNQVLKLAKEAQHPLQSIIEK 101


>gi|158522493|ref|YP_001530363.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfococcus
           oleovorans Hxd3]
 gi|158511319|gb|ABW68286.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfococcus
           oleovorans Hxd3]
          Length = 104

 Score =  101 bits (251), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 64/90 (71%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           +  ++V+ P LY+VLL ND+YT MEFV+ +L++ F K  E A  IML VH  G+G CG++
Sbjct: 15  KTGTRVKPPSLYKVLLHNDDYTTMEFVVEILRHIFRKSLEDATTIMLNVHRNGVGCCGLF 74

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            YEIAE K++ V  Y+R+  +PLQC ME++
Sbjct: 75  TYEIAETKIDLVHGYARERGFPLQCSMERE 104


>gi|157375024|ref|YP_001473624.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           sediminis HAW-EB3]
 gi|189082481|sp|A8FUH3|CLPS_SHESH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|157317398|gb|ABV36496.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           sediminis HAW-EB3]
          Length = 102

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 66/91 (72%)

Query: 47  EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
           E R  S++  P +Y+V+L ND+YTPM+FVI VLQ FF K+ + A  IML +H+QG G CG
Sbjct: 11  EERVESELMPPPMYKVILNNDDYTPMDFVIEVLQLFFKKNEQDATDIMLAIHNQGKGICG 70

Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           V+ + IAE KV QV  ++RQ+Q+PL C +E+
Sbjct: 71  VFPFGIAETKVAQVNQFARQNQHPLLCSLEK 101


>gi|86146449|ref|ZP_01064772.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio sp. MED222]
 gi|218709067|ref|YP_002416688.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio splendidus
           LGP32]
 gi|254763826|sp|B7VM32|CLPS_VIBSL RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|85835712|gb|EAQ53847.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio sp. MED222]
 gi|218322086|emb|CAV18173.1| ATP-dependent Clp protease adaptor protein clpS [Vibrio splendidus
           LGP32]
          Length = 106

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 63/86 (73%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           +KV+ P +Y V+L ND+YTPM+FVI +L+ FF  D E A  +MLKVH++G   CG Y+ E
Sbjct: 20  TKVKPPAMYNVVLHNDDYTPMDFVIEILERFFSLDIEKATEVMLKVHYEGKAICGTYSAE 79

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           IAE KV QV  YS+++++PL C MEQ
Sbjct: 80  IAETKVAQVTMYSKENEHPLLCTMEQ 105


>gi|329905634|ref|ZP_08274165.1| ATP-dependent Clp protease adaptor protein ClpS [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327547556|gb|EGF32362.1| ATP-dependent Clp protease adaptor protein ClpS [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 102

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 64/90 (71%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
           VR + K++ P +Y+V L+ND+YTPMEFV+ ++Q +F KD E A  IML VH  G G CGV
Sbjct: 12  VRQTQKLKPPSMYQVYLLNDDYTPMEFVVAIIQEYFNKDRENATQIMLMVHRDGKGMCGV 71

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           Y  +IA  KV  V+ ++R+  +PLQC+ME+
Sbjct: 72  YPKDIASTKVELVLTHARKAGHPLQCVMEE 101


>gi|117925058|ref|YP_865675.1| ATP-dependent Clp protease adaptor protein ClpS [Magnetococcus sp.
           MC-1]
 gi|117608814|gb|ABK44269.1| ATP-dependent Clp protease adaptor protein ClpS [Magnetococcus sp.
           MC-1]
          Length = 113

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 69/108 (63%), Gaps = 4/108 (3%)

Query: 33  NKKGIAEFDNCLDSE----VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
           N  G    D+ +D +    V     VR P +YRV+L+ND++TPMEFV+ +L +FF K  E
Sbjct: 4   NCSGPTMSDHNIDHDTSVAVHLDVVVREPPMYRVVLLNDDFTPMEFVVELLMHFFRKTAE 63

Query: 89  TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
            A  IML +HH+G+G CG Y  EIAE KV QV  ++R + +PL+C ME
Sbjct: 64  QATQIMLNIHHEGVGVCGTYPREIAETKVAQVHQHARTNGHPLKCRME 111


>gi|149909598|ref|ZP_01898251.1| ATP-dependent Clp protease adaptor protein ClpS [Moritella sp.
           PE36]
 gi|149807302|gb|EDM67255.1| ATP-dependent Clp protease adaptor protein ClpS [Moritella sp.
           PE36]
          Length = 104

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 68/101 (67%), Gaps = 4/101 (3%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           + +F   ++SE+    +++ P  Y+V L ND+YTPM+FV+ VLQ FF  D + A  IML 
Sbjct: 7   LIDFKTSIESEL----ELKPPSFYKVFLNNDDYTPMDFVVDVLQRFFSMDIDKANQIMLT 62

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           VHH+G G CGV+  EIAE KV+QVM Y++ ++  L C MEQ
Sbjct: 63  VHHRGRGVCGVFTAEIAETKVSQVMQYAKDNEQSLLCTMEQ 103


>gi|84393767|ref|ZP_00992515.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio splendidus
           12B01]
 gi|84375629|gb|EAP92528.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio splendidus
           12B01]
          Length = 106

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 63/86 (73%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           +KV+ P +Y V+L ND+YTPM+FVI +L+ FF  D E A  +MLKVH++G   CG Y+ E
Sbjct: 20  TKVKPPAMYNVVLNNDDYTPMDFVIEILERFFSLDIEQATEVMLKVHYEGKAICGTYSAE 79

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           IAE KV QV  YS+++++PL C MEQ
Sbjct: 80  IAETKVAQVKMYSKENEHPLLCTMEQ 105


>gi|170769198|ref|ZP_02903651.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia
           albertii TW07627]
 gi|170121850|gb|EDS90781.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia
           albertii TW07627]
          Length = 106

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 64/92 (69%)

Query: 46  SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
           +E R    ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A  +ML VH+QG   C
Sbjct: 14  AEERVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAIC 73

Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           GV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 74  GVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105


>gi|331672424|ref|ZP_08373214.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           TA280]
 gi|331070330|gb|EGI41695.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           TA280]
          Length = 106

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 68/99 (68%), Gaps = 2/99 (2%)

Query: 39  EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           +FD   + +VR    ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A  +ML VH
Sbjct: 9   DFDQLAEEKVR--DALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVH 66

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 67  YQGKAICGVFIAEVAETKVAMVNKYARENEHPLLCTLEK 105


>gi|332039758|gb|EGI76158.1| ATP-dependent Clp protease adaptor protein ClpS [Hylemonella
           gracilis ATCC 19624]
          Length = 126

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 65/88 (73%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R   KV+ P++++V+++ND+YTPMEFV+ V+Q +F KD ETA  IMLK+H  G G CGVY
Sbjct: 36  RRPQKVQPPQMFQVVMLNDDYTPMEFVVVVIQEYFNKDLETATQIMLKIHLDGRGICGVY 95

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIME 136
             ++A  KV+QV+  +R+  +PLQC+ E
Sbjct: 96  TKDVAATKVDQVLEAARKAGHPLQCVAE 123


>gi|294140597|ref|YP_003556575.1| ATP-dependent Clp protease adaptor protein clpS [Shewanella
           violacea DSS12]
 gi|293327066|dbj|BAJ01797.1| ATP-dependent Clp protease adaptor protein clpS [Shewanella
           violacea DSS12]
          Length = 102

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 66/91 (72%)

Query: 47  EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
           E R  S++  P +Y+V+L ND+YTPM+FVI +LQ FF K+ + A  IML +HHQG G CG
Sbjct: 11  EERVESELMPPSMYKVVLNNDDYTPMDFVIEILQFFFKKNEQEATDIMLAIHHQGKGICG 70

Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           ++ + IAE KV QV  ++RQ+++PL C +E+
Sbjct: 71  IFPFGIAETKVAQVNQFARQNEHPLLCSLEK 101


>gi|30249694|ref|NP_841764.1| hypothetical protein NE1732 [Nitrosomonas europaea ATCC 19718]
 gi|37076996|sp|Q82TY3|CLPS_NITEU RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|30180731|emb|CAD85643.1| DUF174 [Nitrosomonas europaea ATCC 19718]
          Length = 103

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 42/87 (48%), Positives = 67/87 (77%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           +++  P LY+V+L+ND++TPM+FV+ VL++FF  + E A  +MLK+H +G G CG+Y  +
Sbjct: 17  ARLNPPPLYKVILINDDFTPMDFVVKVLRHFFLMNEEMATKVMLKIHIEGAGICGIYPSD 76

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IA  KV QV ++SRQ+Q+PL C+ME++
Sbjct: 77  IAVTKVQQVNDFSRQNQHPLMCVMEKE 103


>gi|308049699|ref|YP_003913265.1| ATP-dependent Clp protease adaptor protein ClpS [Ferrimonas
           balearica DSM 9799]
 gi|307631889|gb|ADN76191.1| ATP-dependent Clp protease adaptor protein ClpS [Ferrimonas
           balearica DSM 9799]
          Length = 104

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/100 (48%), Positives = 66/100 (66%), Gaps = 1/100 (1%)

Query: 38  AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
            E D+ ++ E + S  V  P LY+V+L ND+YTPMEFV+ VL  FF    E A  +ML V
Sbjct: 5   TELDHVVEHE-KQSQAVEPPPLYKVVLNNDDYTPMEFVVEVLTKFFALTQEQATEVMLTV 63

Query: 98  HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           H++G G CGV+ Y++AE K  QV  YSR+H++PL C  E+
Sbjct: 64  HYKGKGVCGVFTYDVAETKAAQVNRYSREHEHPLLCSTEK 103


>gi|289208442|ref|YP_003460508.1| ATP-dependent Clp protease adaptor protein ClpS [Thioalkalivibrio
           sp. K90mix]
 gi|288944073|gb|ADC71772.1| ATP-dependent Clp protease adaptor protein ClpS [Thioalkalivibrio
           sp. K90mix]
          Length = 108

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 63/86 (73%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            +++ P+ Y+V+L+ND++TPMEFV+ VL+ FF  D E A  +ML VH +G G CG+Y  +
Sbjct: 22  PELKPPRQYKVVLLNDDFTPMEFVVEVLETFFSMDREKATQVMLHVHTRGKGICGIYTRD 81

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +AE KV QV +Y+R HQ+PL C ME+
Sbjct: 82  VAETKVAQVNDYARSHQHPLLCSMEE 107


>gi|325282898|ref|YP_004255439.1| ATP-dependent Clp protease adapter protein clpS [Deinococcus
           proteolyticus MRP]
 gi|324314707|gb|ADY25822.1| ATP-dependent Clp protease adapter protein clpS [Deinococcus
           proteolyticus MRP]
          Length = 109

 Score =  100 bits (250), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 61/85 (71%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           ++ R P+L+RVLL+ND+YTPM+FV+ VL+ +F K  + A+ IML VHH+G G  GVY  +
Sbjct: 18  TETRKPRLWRVLLLNDDYTPMDFVVLVLERYFRKTEQDAELIMLAVHHKGQGVAGVYTRD 77

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIME 136
           IAE KV QV   +RQ  YPL+ + E
Sbjct: 78  IAETKVAQVTQLARQEGYPLRVLAE 102


>gi|110834145|ref|YP_693004.1| hypothetical protein ABO_1284 [Alcanivorax borkumensis SK2]
 gi|110647256|emb|CAL16732.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
          Length = 124

 Score =  100 bits (250), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 63/86 (73%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            K++ P +Y+VL++ND+YTPM+FV+ +L++FF  D E A  +ML VH +G   CGVY  +
Sbjct: 38  PKLKPPSMYKVLMLNDDYTPMDFVVEILEDFFNLDREQATRVMLTVHTEGKAVCGVYPQD 97

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           IAE K  QV+ Y+R++Q+PL C +EQ
Sbjct: 98  IAETKATQVVEYARENQHPLMCQVEQ 123


>gi|226355736|ref|YP_002785476.1| ATP-dependent Clp protease adaptor protein clpS [Deinococcus
           deserti VCD115]
 gi|226317726|gb|ACO45722.1| putative ATP-dependent Clp protease adaptor protein clpS
           [Deinococcus deserti VCD115]
          Length = 105

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 61/85 (71%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           S  + P+LYRVLL+ND+YTPMEFV+ VL+ +F K  + A+ IML VHH+G G  G+Y  +
Sbjct: 16  SATQRPRLYRVLLLNDDYTPMEFVVRVLELYFRKTEQEAELIMLAVHHKGQGVAGIYTRD 75

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIME 136
           +AE KV QV + +RQ  YPL+ + E
Sbjct: 76  VAETKVAQVTDRARQEGYPLRLVSE 100


>gi|157962354|ref|YP_001502388.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           pealeana ATCC 700345]
 gi|189082480|sp|A8H5L6|CLPS_SHEPA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|157847354|gb|ABV87853.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           pealeana ATCC 700345]
          Length = 102

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/84 (52%), Positives = 63/84 (75%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+L ND+YTPM+FVI +LQ FF KD + A  IML +HH+G G CG+Y + IA
Sbjct: 18  LKQPSMYKVILNNDDYTPMDFVIEILQLFFKKDEQQATEIMLAIHHKGKGICGIYPFGIA 77

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E KV QV  ++RQ+Q+PL C +E+
Sbjct: 78  ETKVAQVNQFARQNQHPLLCSLEE 101


>gi|85059079|ref|YP_454781.1| ATP-dependent Clp protease adaptor protein ClpS [Sodalis
           glossinidius str. 'morsitans']
 gi|123519578|sp|Q2NTZ9|CLPS_SODGM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|84779599|dbj|BAE74376.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 106

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 64/92 (69%)

Query: 46  SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
           +E +    VR P +Y+V+L+ND+YTPMEFVI VLQ FF  D E A  +ML+VH+QG   C
Sbjct: 14  AEEQVKDAVRPPSMYKVILINDDYTPMEFVIDVLQKFFSYDVERATQLMLRVHYQGKAVC 73

Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           G+Y  E+AE K   V  Y+R++++PL C +E+
Sbjct: 74  GIYTAEVAETKAVHVNRYARENEHPLLCTLEK 105


>gi|205352155|ref|YP_002225956.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|238690486|sp|B5R8G5|CLPS_SALG2 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|205271936|emb|CAR36780.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326627199|gb|EGE33542.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 106

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 67/99 (67%), Gaps = 2/99 (2%)

Query: 39  EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           +FD  ++  VR    ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A  +M  VH
Sbjct: 9   DFDQLVEDSVR--DALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMFAVH 66

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 67  YQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105


>gi|237732131|ref|ZP_04562612.1| ATP-dependent Clp protease adapter protein clpS [Citrobacter sp.
           30_2]
 gi|226907670|gb|EEH93588.1| ATP-dependent Clp protease adapter protein clpS [Citrobacter sp.
           30_2]
          Length = 106

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 68/99 (68%), Gaps = 2/99 (2%)

Query: 39  EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           +FD  L +E +    ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A  +ML VH
Sbjct: 9   DFD--LLAEDKLRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVH 66

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 67  YQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105


>gi|42522812|ref|NP_968192.1| hypothetical protein Bd1289 [Bdellovibrio bacteriovorus HD100]
 gi|67460291|sp|Q6MNG7|CLPS_BDEBA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|39574008|emb|CAE79185.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100]
          Length = 114

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/94 (47%), Positives = 68/94 (72%)

Query: 45  DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
           ++ V+   K+  PK+Y+V+L+ND+YTPM+FV+ VL+ FF K  E A  IML VH +G G 
Sbjct: 20  EAGVQLVPKLDTPKMYKVILLNDDYTPMDFVVLVLRRFFAKTEEQATEIMLDVHKKGAGV 79

Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            GV++ EIAEMKV QV  +++ +QYPL+  +E++
Sbjct: 80  AGVFSLEIAEMKVMQVNQFAQLNQYPLKSTLEEE 113


>gi|148261822|ref|YP_001235949.1| ATP-dependent Clp protease adaptor protein ClpS [Acidiphilium
           cryptum JF-5]
 gi|146403503|gb|ABQ32030.1| ATP-dependent Clp protease adaptor protein ClpS [Acidiphilium
           cryptum JF-5]
          Length = 147

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 70/105 (66%), Gaps = 4/105 (3%)

Query: 36  GIAEFDNCLDSEVRFSSKVRV----PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
           G+ +FD     +  F+++ R     P LYRV++ ND+YTPMEFV+  L   F K  + A 
Sbjct: 41  GMDDFDGQDGMDPVFATQARARAKRPPLYRVMMFNDDYTPMEFVVATLVGLFGKTTDEAG 100

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
            I L++H +G+G CG++ YEIAE K+ QV+  +R++Q+PLQC++E
Sbjct: 101 RIALRIHRRGVGVCGIFTYEIAETKMIQVLELARENQHPLQCMIE 145


>gi|319763343|ref|YP_004127280.1| ATP-dependent clp protease adaptor protein clps [Alicycliphilus
           denitrificans BC]
 gi|317117904|gb|ADV00393.1| ATP-dependent Clp protease adaptor protein ClpS [Alicycliphilus
           denitrificans BC]
          Length = 120

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 63/88 (71%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R + K + P++Y+V+++ND+YTPMEFV+ VLQ FF KD E A  IMLK+H  G G CGVY
Sbjct: 30  RRTQKTKPPQMYQVVMLNDDYTPMEFVVVVLQEFFNKDREAATQIMLKIHLDGKGVCGVY 89

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIME 136
             ++A  KV QV++ + +  +PLQC+ E
Sbjct: 90  TRDVAATKVEQVLDAAHRAGHPLQCVSE 117


>gi|33301910|sp|Q8DAS0|CLPS_VIBVU RecName: Full=ATP-dependent Clp protease adapter protein ClpS
          Length = 106

 Score =  100 bits (250), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
           N + I    + L+ E+   ++++ PK Y V+L ND+YTPM+FVI VL+ FF  D   A  
Sbjct: 4   NFEWITPDSDLLEKEI---TQIQPPKKYNVVLNNDDYTPMDFVIDVLERFFSHDLNKATQ 60

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           IMLKVH++G   CG Y+ EIAE KV QV  YSR++++PL C MEQ
Sbjct: 61  IMLKVHYEGKAICGTYSAEIAETKVAQVTMYSRENEHPLLCTMEQ 105


>gi|283784648|ref|YP_003364513.1| ATP-dependent Clp protease adaptor protein [Citrobacter rodentium
           ICC168]
 gi|282948102|emb|CBG87667.1| ATP-dependent Clp protease adaptor protein [Citrobacter rodentium
           ICC168]
          Length = 106

 Score =  100 bits (249), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 67/99 (67%), Gaps = 2/99 (2%)

Query: 39  EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           +FD     +VR    ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A  +ML VH
Sbjct: 9   DFDQLAADKVR--DALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVH 66

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +QG   CG++  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 67  YQGKAICGIFTAEVAETKVAMVNKYARENEHPLLCTLEK 105


>gi|281178016|dbj|BAI54346.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 106

 Score =  100 bits (249), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 68/99 (68%), Gaps = 2/99 (2%)

Query: 39  EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           +FD   + +VR    ++ P +Y+V+LVND+YTPM+FVI VLQ FF  D E A  +ML VH
Sbjct: 9   DFDQLAEEKVR--DALKPPSMYKVILVNDDYTPMDFVIDVLQKFFSYDVERATQLMLAVH 66

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 67  YQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105


>gi|330825577|ref|YP_004388880.1| ATP-dependent Clp protease adapter protein clpS [Alicycliphilus
           denitrificans K601]
 gi|329310949|gb|AEB85364.1| ATP-dependent Clp protease adapter protein clpS [Alicycliphilus
           denitrificans K601]
          Length = 120

 Score =  100 bits (249), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 63/88 (71%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R + K + P++Y+V+++ND+YTPMEFV+ VLQ FF KD E A  IMLK+H  G G CGVY
Sbjct: 30  RRTQKTKPPQMYQVVMLNDDYTPMEFVVVVLQEFFNKDREAATQIMLKIHLDGKGVCGVY 89

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIME 136
             ++A  KV QV++ + +  +PLQC+ E
Sbjct: 90  TRDVAATKVEQVLDAAHRAGHPLQCVSE 117


>gi|307822307|ref|ZP_07652539.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacter
           tundripaludum SV96]
 gi|307736873|gb|EFO07718.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacter
           tundripaludum SV96]
          Length = 107

 Score =  100 bits (249), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 64/86 (74%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            K++ P LY+V+L+ND++TPM+FVI +L +FF    E A  +ML+VH QG+G CG+Y+ +
Sbjct: 21  PKLKRPPLYKVILLNDDFTPMDFVIEILMDFFAMSEEKATQVMLQVHTQGVGVCGMYSKD 80

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +AE KV  V +YSR+H +PL C ME+
Sbjct: 81  VAETKVYIVNDYSREHHHPLMCSMEE 106


>gi|332088859|gb|EGI93971.1| ATP-dependent Clp protease adaptor protein ClpS family protein
           [Shigella boydii 5216-82]
          Length = 106

 Score =  100 bits (249), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 68/99 (68%), Gaps = 2/99 (2%)

Query: 39  EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           +FD   + +VR    ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A  +ML VH
Sbjct: 9   DFDQLAEEKVR--DALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVH 66

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +QG   CGV+  E+AE K+  V  Y+R++++PL C +E+
Sbjct: 67  YQGKAICGVFTAEVAETKMAMVNKYARENEHPLLCTLEK 105


>gi|283832492|ref|ZP_06352233.1| ATP-dependent Clp protease adaptor protein ClpS [Citrobacter
           youngae ATCC 29220]
 gi|291072152|gb|EFE10261.1| ATP-dependent Clp protease adaptor protein ClpS [Citrobacter
           youngae ATCC 29220]
          Length = 106

 Score =  100 bits (249), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 68/99 (68%), Gaps = 2/99 (2%)

Query: 39  EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           +FD  L +E +    ++ P +Y+V+L+ND+YTPMEFVI VLQ FF  D E A  +ML VH
Sbjct: 9   DFD--LLAEDKLRDALKPPSMYKVILINDDYTPMEFVIDVLQKFFSYDVERATQLMLAVH 66

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 67  YQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105


>gi|86139108|ref|ZP_01057679.1| ATP-dependent Clp protease, adaptor protein ClpS [Roseobacter sp.
           MED193]
 gi|85824339|gb|EAQ44543.1| ATP-dependent Clp protease, adaptor protein ClpS [Roseobacter sp.
           MED193]
          Length = 114

 Score =  100 bits (249), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 63/87 (72%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            K + P  Y+VLL+ND+YTPMEFV+ VL+ FF   H  +  IML VH +G+   GV+ +E
Sbjct: 27  PKTQRPPRYKVLLLNDDYTPMEFVVMVLERFFGMTHAQSFEIMLTVHKKGVAVVGVFTHE 86

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IAE KV QVM+++ +HQ+PLQC ME++
Sbjct: 87  IAETKVAQVMDFANRHQHPLQCTMEKE 113


>gi|94499670|ref|ZP_01306207.1| ATP-dependent Clp protease adaptor protein ClpS [Oceanobacter sp.
           RED65]
 gi|94428424|gb|EAT13397.1| ATP-dependent Clp protease adaptor protein ClpS [Oceanobacter sp.
           RED65]
          Length = 116

 Score =  100 bits (248), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 61/85 (71%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           +++ P LY+V+++ND+YTPM+FVI VL  FF  D E A  IML VH QG   CGVY  +I
Sbjct: 29  ELKRPSLYQVIMLNDDYTPMDFVIDVLTRFFAMDMEKATQIMLAVHTQGSAVCGVYTKDI 88

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           AE K  QVM Y+ +HQ+PL+C ++Q
Sbjct: 89  AETKAAQVMAYAEEHQHPLKCNIQQ 113


>gi|285018228|ref|YP_003375939.1| ATP-dependent clp protease adaptor protein clps [Xanthomonas
           albilineans GPE PC73]
 gi|283473446|emb|CBA15951.1| putative atp-dependent clp protease adaptor protein clps
           [Xanthomonas albilineans]
          Length = 94

 Score =  100 bits (248), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 47/81 (58%), Positives = 59/81 (72%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           P +Y+VLL+ND+YTPMEFV+ VLQ FF  D E A  +ML VH +G G CGVY  E+AE K
Sbjct: 13  PPMYQVLLLNDDYTPMEFVVTVLQQFFALDLERATQVMLHVHTRGRGVCGVYTREVAESK 72

Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
           V QV  +SR +Q+PL C ME+
Sbjct: 73  VAQVNEFSRMNQHPLLCTMEK 93


>gi|215486012|ref|YP_002328443.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O127:H6 str. E2348/69]
 gi|254763815|sp|B7UMX3|CLPS_ECO27 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|215264084|emb|CAS08426.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           O127:H6 str. E2348/69]
          Length = 106

 Score =  100 bits (248), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 68/99 (68%), Gaps = 2/99 (2%)

Query: 39  EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           +F+   + +VR    ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A  +ML VH
Sbjct: 9   DFEQLAEEKVR--DALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVH 66

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 67  YQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105


>gi|229525754|ref|ZP_04415159.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           bv. albensis VL426]
 gi|229339335|gb|EEO04352.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           bv. albensis VL426]
          Length = 106

 Score =  100 bits (248), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 61/86 (70%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           + V+ P +Y V+L ND+YTPM+FVI +L+ FF  D E A  +MLKVH++G   CG +  E
Sbjct: 20  TAVKPPSMYHVVLNNDDYTPMDFVIEILERFFSMDIERATQVMLKVHYEGKAICGTFTAE 79

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +AE KV QV  YSR++++PL C MEQ
Sbjct: 80  VAETKVAQVTRYSRENEHPLLCTMEQ 105


>gi|222111090|ref|YP_002553354.1| ATP-dependent clp protease adaptor protein clps [Acidovorax ebreus
           TPSY]
 gi|221730534|gb|ACM33354.1| ATP-dependent Clp protease adaptor protein ClpS [Acidovorax ebreus
           TPSY]
          Length = 122

 Score =  100 bits (248), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 63/88 (71%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R + K + P++Y+V+++ND+YTPMEFV+ VLQ FF KD E A  IMLK+H  G G CGVY
Sbjct: 32  RRTQKTQPPQMYQVVMLNDDYTPMEFVVVVLQEFFNKDREAATQIMLKIHLDGKGVCGVY 91

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIME 136
             ++A  KV+QV+  + +  +PLQC+ E
Sbjct: 92  TRDVAATKVDQVLEAAHKAGHPLQCLSE 119


>gi|59712373|ref|YP_205149.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio fischeri
           ES114]
 gi|197335290|ref|YP_002156588.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio fischeri
           MJ11]
 gi|67460142|sp|Q5E3Y5|CLPS_VIBF1 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238690298|sp|B5FG65|CLPS_VIBFM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|59480474|gb|AAW86261.1| specificity factor for ClpA-ClpP chaperone-protease complex [Vibrio
           fischeri ES114]
 gi|197316780|gb|ACH66227.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio fischeri
           MJ11]
          Length = 106

 Score =  100 bits (248), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 65/95 (68%), Gaps = 2/95 (2%)

Query: 45  DSEV--RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
           DS+V  +  +++R P +Y+V+L ND+YTPMEFV+ VL  FF  D E A  +ML VH++G 
Sbjct: 11  DSDVLEQEKTELRPPSMYKVVLNNDDYTPMEFVVEVLDKFFSMDLEKATQLMLTVHYEGK 70

Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             CG +  E+AE KV QV  YSR +++PL C MEQ
Sbjct: 71  AVCGTFTAEVAETKVAQVNTYSRDNEHPLLCTMEQ 105


>gi|268590195|ref|ZP_06124416.1| ATP-dependent Clp protease adaptor protein ClpS [Providencia
           rettgeri DSM 1131]
 gi|291314476|gb|EFE54929.1| ATP-dependent Clp protease adaptor protein ClpS [Providencia
           rettgeri DSM 1131]
          Length = 106

 Score =  100 bits (248), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 4/105 (3%)

Query: 37  IAEFDNCLDSEVRFSSKV----RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
           +++F     ++V F  ++    + P +Y+VLL ND+YTPM+FV+ VLQ +F  D E A  
Sbjct: 1   MSDFLGTFKTDVIFKDEIEQTLQPPSMYKVLLNNDDYTPMDFVVEVLQKYFSFDEERATQ 60

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           IML VH QG G CG++  E+AE K  QV  ++R+H+YPL C +E+
Sbjct: 61  IMLDVHIQGKGVCGIFTAEVAETKAAQVNTFAREHEYPLLCTIEK 105


>gi|237752679|ref|ZP_04583159.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229376168|gb|EEO26259.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 101

 Score =  100 bits (248), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 69/100 (69%), Gaps = 4/100 (4%)

Query: 38  AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
           A+FD   ++      K++ P  YRV+L+ND+YT  EFVI VLQ  F+KD E +  +ML++
Sbjct: 5   AQFDQITET----LEKIQEPIRYRVILLNDDYTTQEFVIEVLQAIFHKDFEESLNLMLQI 60

Query: 98  HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           HH G G CG+Y Y+IAE+KV QV   +++ QYPL+ I+E+
Sbjct: 61  HHNGKGVCGIYPYDIAEIKVAQVRKMAKEKQYPLRAILEK 100


>gi|218885563|ref|YP_002434884.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|226706562|sp|B8DJU4|CLPS_DESVM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|218756517|gb|ACL07416.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 100

 Score =  100 bits (248), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 45/97 (46%), Positives = 64/97 (65%)

Query: 41  DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
           D   D+E+    +VR P+++RVLL ND+YT MEFV+ +L   F +  + A  IML VH +
Sbjct: 3   DGGRDTELLIEDEVREPRMFRVLLHNDDYTTMEFVVSILIEVFRRTPDEATRIMLAVHEK 62

Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           G+GECGVY  E+AE KV  V   +R+  YPL+C +E+
Sbjct: 63  GVGECGVYTAEVAETKVALVHARARREGYPLRCTLEE 99


>gi|90408367|ref|ZP_01216530.1| ATP-dependent Clp protease adaptor protein ClpS [Psychromonas sp.
           CNPT3]
 gi|90310530|gb|EAS38652.1| ATP-dependent Clp protease adaptor protein ClpS [Psychromonas sp.
           CNPT3]
          Length = 108

 Score =  100 bits (248), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 45/89 (50%), Positives = 65/89 (73%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           +  +K++ P +Y VLL ND+YTPM+FVI VLQ FF    + A  IML VH+  IG CG +
Sbjct: 18  KLETKLQPPAMYNVLLHNDDYTPMDFVIDVLQRFFQLSTDKATQIMLDVHYHDIGICGTF 77

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           + EIAE KV QVMNY++++++PL+C M++
Sbjct: 78  SAEIAETKVMQVMNYAQENEHPLRCSMQK 106


>gi|251789967|ref|YP_003004688.1| ATP-dependent Clp protease adaptor protein ClpS [Dickeya zeae
           Ech1591]
 gi|247538588|gb|ACT07209.1| ATP-dependent Clp protease adaptor protein ClpS [Dickeya zeae
           Ech1591]
          Length = 106

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 64/88 (72%)

Query: 50  FSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYA 109
           ++  ++ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A  +ML VH+QG   CGVY+
Sbjct: 18  YTEALQPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQLMLTVHYQGKAICGVYS 77

Query: 110 YEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            E+AE KV QV  Y+R++++PL C +E+
Sbjct: 78  AEVAETKVEQVNRYARENEHPLLCTLEK 105


>gi|91793189|ref|YP_562840.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           denitrificans OS217]
 gi|122968755|sp|Q12N59|CLPS_SHEDO RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|91715191|gb|ABE55117.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           denitrificans OS217]
          Length = 102

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/106 (47%), Positives = 68/106 (64%), Gaps = 5/106 (4%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
           M K G  E      ++ R  S++  P +Y+V+L ND+YTPM+FVI VL  FF K    A 
Sbjct: 1   MGKTGSVEH-----TKQRIESELMPPSMYKVILNNDDYTPMDFVIEVLARFFDKHEPQAT 55

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            IML +HHQG G CGVY + IAE KV QV  ++R++Q+PL C +E+
Sbjct: 56  DIMLTIHHQGKGICGVYPFGIAETKVLQVNQFARENQHPLLCTLEK 101


>gi|260222810|emb|CBA32750.1| ATP-dependent Clp protease adapter protein clpS [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 108

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 63/88 (71%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R S +V+ P +Y+V+++ND+YTPMEFV+ V+Q FF KD E A  IMLK+H  G G CGVY
Sbjct: 17  RLSQRVQPPSMYQVVMLNDDYTPMEFVVVVIQEFFGKDLEAATQIMLKIHLDGRGVCGVY 76

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIME 136
             +IA  KV+QV+  + +  +PL+C+ E
Sbjct: 77  PKDIAATKVDQVLEAAHKAGHPLKCVSE 104


>gi|254417766|ref|ZP_05031490.1| ATP-dependent Clp protease adaptor protein ClpS [Brevundimonas sp.
           BAL3]
 gi|196183943|gb|EDX78919.1| ATP-dependent Clp protease adaptor protein ClpS [Brevundimonas sp.
           BAL3]
          Length = 77

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/75 (57%), Positives = 58/75 (77%)

Query: 63  LLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMN 122
           L++ND+Y+PMEFV++VL+ FF K  E A  IML VH  G+G CGV+ YE+AE KV QV+ 
Sbjct: 2   LILNDDYSPMEFVVYVLERFFQKSREEATRIMLHVHQHGVGVCGVFTYEVAETKVAQVIE 61

Query: 123 YSRQHQYPLQCIMEQ 137
            +R+HQ+PLQC ME+
Sbjct: 62  TARRHQHPLQCTMEK 76


>gi|323496571|ref|ZP_08101624.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio sinaloensis
           DSM 21326]
 gi|323318317|gb|EGA71275.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio sinaloensis
           DSM 21326]
          Length = 106

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 62/86 (72%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           +K++ P +Y V+L ND+YTPM+FVI +L+ FF  D + A  +MLKVH++G   CG +  E
Sbjct: 20  TKIKPPSMYNVVLNNDDYTPMDFVIEILERFFSMDEDKATQVMLKVHYEGKAICGTFTAE 79

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +AE KV QV  YS+++++PL C MEQ
Sbjct: 80  VAETKVAQVTMYSKENEHPLLCTMEQ 105


>gi|121594198|ref|YP_986094.1| ATP-dependent Clp protease adaptor protein ClpS [Acidovorax sp.
           JS42]
 gi|120606278|gb|ABM42018.1| ATP-dependent Clp protease adaptor protein ClpS [Acidovorax sp.
           JS42]
          Length = 135

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 63/88 (71%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R + K + P++Y+V+++ND+YTPMEFV+ VLQ FF KD E A  IMLK+H  G G CGVY
Sbjct: 45  RRTQKTQPPQMYQVVMLNDDYTPMEFVVVVLQEFFNKDREAATQIMLKIHLDGKGVCGVY 104

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIME 136
             ++A  KV+QV+  + +  +PLQC+ E
Sbjct: 105 TRDVAATKVDQVLEAAHKAGHPLQCLSE 132


>gi|330427907|gb|AEC19241.1| ATP-dependent Clp protease adaptor protein ClpS [Pusillimonas sp.
           T7-7]
          Length = 107

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 61/88 (69%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R  +K+  P +Y+V+L+ND+YTPMEFV+ VLQ  F K+ + A  IMLKVHH+G G CGVY
Sbjct: 15  RQPAKLAPPPMYQVVLLNDDYTPMEFVVAVLQRIFGKNEDEAARIMLKVHHEGRGVCGVY 74

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIME 136
             +IA  +V  V   +   Q+PLQC+ME
Sbjct: 75  PRDIAATRVEMVRQMAHARQHPLQCVME 102


>gi|156934623|ref|YP_001438539.1| ATP-dependent Clp protease adaptor protein ClpS [Cronobacter
           sakazakii ATCC BAA-894]
 gi|260597283|ref|YP_003209854.1| ATP-dependent Clp protease adaptor protein ClpS [Cronobacter
           turicensis z3032]
 gi|166214735|sp|A7MEQ8|CLPS_ENTS8 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|156532877|gb|ABU77703.1| hypothetical protein ESA_02457 [Cronobacter sakazakii ATCC BAA-894]
 gi|260216460|emb|CBA29592.1| ATP-dependent Clp protease adapter protein clpS [Cronobacter
           turicensis z3032]
          Length = 106

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 69/103 (66%), Gaps = 2/103 (1%)

Query: 35  KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
           K   +FD+  + ++R    ++ P +Y+V+L+ND+YTPMEFVI VLQ FF  D E A  +M
Sbjct: 5   KSWLDFDHLAEDDLR--EALKPPSMYKVILMNDDYTPMEFVIDVLQKFFSYDVERATQLM 62

Query: 95  LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           L VH+QG   CGV+  E+AE KV  V  Y+R++ +PL C +E+
Sbjct: 63  LTVHYQGKAICGVFTAEVAETKVALVNKYARENDHPLLCTLEK 105


>gi|289805673|ref|ZP_06536302.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 107

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 65/95 (68%), Gaps = 2/95 (2%)

Query: 39  EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           +FD  ++  VR    ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A  +ML VH
Sbjct: 9   DFDQLVEDSVR--DALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVH 66

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQC 133
           +QG   CGV+  E+AE KV  V  Y+R++++PL C
Sbjct: 67  YQGKAICGVFTAEVAETKVAMVNKYARENEHPLLC 101


>gi|291616886|ref|YP_003519628.1| ClpS [Pantoea ananatis LMG 20103]
 gi|291151916|gb|ADD76500.1| ClpS [Pantoea ananatis LMG 20103]
 gi|327393314|dbj|BAK10736.1| ATP-dependent Clp protease adaptor protein ClpS [Pantoea ananatis
           AJ13355]
          Length = 106

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
           N      F+   D +VR    ++ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A  
Sbjct: 3   NTNDWLNFEQLADDKVR--EGLKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQ 60

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +MLKVH+ G   CGV+  E+AE K  QV NY+R + +PL C +E+
Sbjct: 61  LMLKVHYHGKAICGVFTAEVAETKAAQVNNYARDNHHPLLCTLEK 105


>gi|271500837|ref|YP_003333862.1| ATP-dependent Clp protease adaptor protein ClpS [Dickeya dadantii
           Ech586]
 gi|270344392|gb|ACZ77157.1| ATP-dependent Clp protease adaptor protein ClpS [Dickeya dadantii
           Ech586]
          Length = 106

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 64/88 (72%)

Query: 50  FSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYA 109
           ++  ++ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A  +ML VH+QG   CGVY+
Sbjct: 18  YTEALQPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQLMLTVHYQGKAICGVYS 77

Query: 110 YEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            E+AE KV QV  Y+R++++PL C +E+
Sbjct: 78  AEVAETKVAQVNRYARENEHPLLCTLEK 105


>gi|254506183|ref|ZP_05118327.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
           parahaemolyticus 16]
 gi|219551001|gb|EED27982.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
           parahaemolyticus 16]
          Length = 106

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 62/86 (72%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           +KV+ P +Y V+L ND+YTPM+FVI +L+ FF  D + A  +ML+VH++G   CG Y  E
Sbjct: 20  TKVKPPSMYNVVLNNDDYTPMDFVIEILERFFSMDADKATQVMLQVHYEGKAICGTYTAE 79

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +AE KV QV  YS+++++PL C MEQ
Sbjct: 80  VAETKVAQVTMYSKENEHPLLCTMEQ 105


>gi|21231414|ref|NP_637331.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66768532|ref|YP_243294.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|24638420|sp|Q8P999|CLPS_XANCP RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|81305496|sp|Q4UUJ9|CLPS_XANC8 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|21113082|gb|AAM41255.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573864|gb|AAY49274.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 106

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 69/106 (65%), Gaps = 1/106 (0%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
           M +K   E D+ L  E     +V  P  Y+VLL+ND+YTPM+FV+ VLQ FF  + E A 
Sbjct: 1   MPRKTSHEHDHGLVVETS-KPEVAPPPRYQVLLLNDDYTPMDFVVTVLQQFFNLELERAT 59

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            +ML VH +G G CGVY+ E+AE KV QV  +SR +Q+PL C MEQ
Sbjct: 60  QVMLHVHTRGRGVCGVYSREVAESKVAQVNEFSRMNQHPLLCTMEQ 105


>gi|256822682|ref|YP_003146645.1| ATP-dependent Clp protease adaptor protein ClpS [Kangiella
           koreensis DSM 16069]
 gi|256796221|gb|ACV26877.1| ATP-dependent Clp protease adaptor protein ClpS [Kangiella
           koreensis DSM 16069]
          Length = 115

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/87 (49%), Positives = 64/87 (73%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            K++ P +Y+VL++ND+YTPM+FV+ VL+ FF  D E A  +ML+VHH+G G CG +  +
Sbjct: 26  PKLKQPPMYKVLILNDDYTPMDFVVDVLRKFFTMDTEQATRVMLQVHHEGQGVCGTFTPD 85

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IAE KV QV  ++R +Q+PL C+ME +
Sbjct: 86  IAETKVVQVNEFARANQHPLLCVMEPE 112


>gi|304311206|ref|YP_003810804.1| ATP-dependent Clp protease adaptor protein [gamma proteobacterium
           HdN1]
 gi|301796939|emb|CBL45152.1| ATP-dependent Clp protease adaptor protein [gamma proteobacterium
           HdN1]
          Length = 120

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 71/106 (66%), Gaps = 3/106 (2%)

Query: 33  NKKGIAEFDNCLDSEVR-FSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
           N+  + E +   D  VR  S++V  P +++VL++ND+YTPMEFV+ VLQ FF  + E A 
Sbjct: 16  NRPSVTEAEG--DLAVREASAEVAPPPMFQVLMLNDDYTPMEFVVEVLQRFFGMNREAAT 73

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            +ML VH +G   CGV+  ++AE K  QVM Y+R++Q+PL C +E+
Sbjct: 74  QVMLIVHTKGQASCGVFTKDVAETKAMQVMKYARENQHPLMCRIER 119


>gi|261339214|ref|ZP_05967072.1| hypothetical protein ENTCAN_05442 [Enterobacter cancerogenus ATCC
           35316]
 gi|296103112|ref|YP_003613258.1| ATP-dependent Clp protease adaptor protein ClpS [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|288319063|gb|EFC58001.1| ATP-dependent Clp protease adaptor protein ClpS [Enterobacter
           cancerogenus ATCC 35316]
 gi|295057571|gb|ADF62309.1| ATP-dependent Clp protease adaptor protein ClpS [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295096412|emb|CBK85502.1| Uncharacterized conserved protein [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 106

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/99 (45%), Positives = 69/99 (69%), Gaps = 2/99 (2%)

Query: 39  EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           +FD   + +VR    ++ P +Y+V+L+ND+YTPMEFVI VLQ FF  D E A  +ML VH
Sbjct: 9   DFDQLAEDKVR--DALKPPSMYKVMLMNDDYTPMEFVIDVLQKFFSYDVERATQLMLTVH 66

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           ++G   CG++  E+AE KV  V +Y+R++++PL C +E+
Sbjct: 67  YRGKAICGIFTAEVAETKVAMVNDYARENEHPLLCTLEK 105


>gi|300716062|ref|YP_003740865.1| ATP-dependent Clp protease adaptor protein [Erwinia billingiae
           Eb661]
 gi|299061898|emb|CAX59014.1| ATP-dependent Clp protease adaptor protein [Erwinia billingiae
           Eb661]
          Length = 106

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 68/105 (64%), Gaps = 2/105 (1%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
           N      F++  D ++R    ++ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A  
Sbjct: 3   NTNDWLNFEHLADDKLR--EGLKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDTERATQ 60

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +ML VH+QG   CGVY  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 61  LMLAVHYQGKAICGVYTAEVAETKVAHVNKYARENEHPLLCTLEK 105


>gi|90413212|ref|ZP_01221207.1| ATP-dependent Clp protease adaptor protein ClpS [Photobacterium
           profundum 3TCK]
 gi|90325764|gb|EAS42222.1| ATP-dependent Clp protease adaptor protein ClpS [Photobacterium
           profundum 3TCK]
          Length = 106

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 73/108 (67%), Gaps = 4/108 (3%)

Query: 30  SRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
           S++ +  I E D  LD E    ++V+ P +Y+V+L ND+YTPM+FVI VLQ FF  D E 
Sbjct: 2   SKLYEWIIPESD-VLDKE---EAQVKPPAMYKVVLNNDDYTPMDFVIEVLQKFFSMDMEK 57

Query: 90  AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           A  +ML VH++G   CG +  E+AE KV QVM ++R++++PL C ME+
Sbjct: 58  ATQLMLNVHYEGKAICGTFTAEVAETKVAQVMMHARENEHPLLCTMEK 105


>gi|145299397|ref|YP_001142238.1| ATP-dependent Clp protease adaptor protein ClpS [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|158514051|sp|A4SNL8|CLPS_AERS4 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|142852169|gb|ABO90490.1| ATP-dependent Clp protease adaptor protein ClpS [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 105

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 61/86 (70%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           +K++ P +Y+V+L ND+YTPMEFV+ VLQ FF  D + A  +ML VH+ G G CG +  E
Sbjct: 19  TKLQPPPMYKVVLNNDDYTPMEFVVEVLQKFFGMDLDKATQVMLSVHYSGKGVCGTFTAE 78

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           IAE KV QV  YSR +++PL C ME+
Sbjct: 79  IAETKVVQVNTYSRNNEHPLLCTMEK 104


>gi|200390037|ref|ZP_03216648.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|199602482|gb|EDZ01028.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
          Length = 106

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 67/99 (67%), Gaps = 2/99 (2%)

Query: 39  EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           +FD  ++  V     ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A  +ML VH
Sbjct: 9   DFDQLVEDSV--CDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVH 66

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 67  YQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105


>gi|258621690|ref|ZP_05716721.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio mimicus
           VM573]
 gi|258626363|ref|ZP_05721210.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio mimicus
           VM603]
 gi|262165415|ref|ZP_06033152.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio mimicus
           VM223]
 gi|262171823|ref|ZP_06039501.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio mimicus
           MB-451]
 gi|258581415|gb|EEW06317.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio mimicus
           VM603]
 gi|258585921|gb|EEW10639.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio mimicus
           VM573]
 gi|261892899|gb|EEY38885.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio mimicus
           MB-451]
 gi|262025131|gb|EEY43799.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio mimicus
           VM223]
          Length = 106

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 61/86 (70%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           + V+ P +Y V+L ND+YTPM+FVI +L+ FF  D E A  +MLKVH++G   CG +  E
Sbjct: 20  TAVKPPSMYHVVLNNDDYTPMDFVIEILERFFSMDIERATQVMLKVHYEGKAICGTFTAE 79

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +AE KV QV  YSR++++PL C MEQ
Sbjct: 80  VAETKVAQVTMYSRENEHPLLCTMEQ 105


>gi|27065491|pdb|1LZW|A Chain A, Structural Basis Of Clps-Mediated Switch In Clpa Substrate
           Recognition
 gi|27065646|pdb|1MG9|A Chain A, The Structural Basis Of Clps-Mediated Switch In Clpa
           Substrate Recognition
          Length = 106

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 67/99 (67%), Gaps = 2/99 (2%)

Query: 39  EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           +FD   + +VR    ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A  +ML V 
Sbjct: 9   DFDQLAEEKVR--DALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVA 66

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 67  YQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105


>gi|114563426|ref|YP_750939.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           frigidimarina NCIMB 400]
 gi|122299542|sp|Q081G4|CLPS_SHEFN RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|114334719|gb|ABI72101.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           frigidimarina NCIMB 400]
          Length = 102

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 71/101 (70%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           +A+  N    E +  S+++ P +Y+V+L ND+YTPM+FV+ VLQ FF K+ + A  IML 
Sbjct: 1   MAKLGNVEHIEEKVESELQPPHMYKVVLNNDDYTPMDFVVEVLQRFFEKNEQQAVDIMLA 60

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +H+QG G CGV+ + IAE KV QV  ++R++Q+PL C +E+
Sbjct: 61  IHNQGKGLCGVFPFGIAETKVFQVNQFARENQHPLLCTLEK 101


>gi|15641156|ref|NP_230788.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121587408|ref|ZP_01677177.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           2740-80]
 gi|121726248|ref|ZP_01679538.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           V52]
 gi|147674267|ref|YP_001216663.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           O395]
 gi|153214234|ref|ZP_01949269.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           1587]
 gi|153802564|ref|ZP_01957150.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           MZO-3]
 gi|153816957|ref|ZP_01969624.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           NCTC 8457]
 gi|153821999|ref|ZP_01974666.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           B33]
 gi|153826033|ref|ZP_01978700.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           MZO-2]
 gi|153828695|ref|ZP_01981362.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           623-39]
 gi|227081316|ref|YP_002809867.1| ATP-dependent Clp protease adaptor protein [Vibrio cholerae M66-2]
 gi|229505262|ref|ZP_04394772.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae BX
           330286]
 gi|229511068|ref|ZP_04400547.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           B33]
 gi|229515526|ref|ZP_04404985.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           TMA 21]
 gi|229518188|ref|ZP_04407632.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           RC9]
 gi|229520427|ref|ZP_04409852.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae TM
           11079-80]
 gi|229529768|ref|ZP_04419158.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           12129(1)]
 gi|229608281|ref|YP_002878929.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           MJ-1236]
 gi|254225532|ref|ZP_04919142.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           V51]
 gi|254291568|ref|ZP_04962358.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           AM-19226]
 gi|254848271|ref|ZP_05237621.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           MO10]
 gi|255745555|ref|ZP_05419503.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholera
           CIRS 101]
 gi|262158371|ref|ZP_06029487.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           INDRE 91/1]
 gi|262170183|ref|ZP_06037871.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           RC27]
 gi|297578745|ref|ZP_06940673.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           RC385]
 gi|298498752|ref|ZP_07008559.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           MAK 757]
 gi|12230810|sp|Q9KSW3|CLPS_VIBCH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|172047399|sp|A5F294|CLPS_VIBC3 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|254763825|sp|C3LLJ0|CLPS_VIBCM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|9655616|gb|AAF94302.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121548328|gb|EAX58392.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           2740-80]
 gi|121631194|gb|EAX63567.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           V52]
 gi|124115483|gb|EAY34303.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           1587]
 gi|124121878|gb|EAY40621.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           MZO-3]
 gi|125622002|gb|EAZ50326.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           V51]
 gi|126512544|gb|EAZ75138.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           NCTC 8457]
 gi|126520464|gb|EAZ77687.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           B33]
 gi|146316150|gb|ABQ20689.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           O395]
 gi|148875848|gb|EDL73983.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           623-39]
 gi|149740253|gb|EDM54400.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           MZO-2]
 gi|150422520|gb|EDN14477.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           AM-19226]
 gi|227009204|gb|ACP05416.1| ATP-dependent Clp protease adaptor protein [Vibrio cholerae M66-2]
 gi|227013010|gb|ACP09220.1| ATP-dependent Clp protease adaptor protein [Vibrio cholerae O395]
 gi|229333542|gb|EEN99028.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           12129(1)]
 gi|229342525|gb|EEO07518.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae TM
           11079-80]
 gi|229344903|gb|EEO09877.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           RC9]
 gi|229347295|gb|EEO12255.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           TMA 21]
 gi|229351033|gb|EEO15974.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           B33]
 gi|229357485|gb|EEO22402.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae BX
           330286]
 gi|229370936|gb|ACQ61359.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           MJ-1236]
 gi|254843976|gb|EET22390.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           MO10]
 gi|255736630|gb|EET92027.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholera
           CIRS 101]
 gi|262021352|gb|EEY40065.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           RC27]
 gi|262029812|gb|EEY48460.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           INDRE 91/1]
 gi|297536339|gb|EFH75172.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           RC385]
 gi|297543085|gb|EFH79135.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           MAK 757]
 gi|327483847|gb|AEA78254.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
           LMA3894-4]
          Length = 106

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 61/86 (70%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           + V+ P +Y V+L ND+YTPM+FVI +L+ FF  D E A  +MLKVH++G   CG +  E
Sbjct: 20  TAVKPPSMYHVVLNNDDYTPMDFVIEILERFFSMDIERATQVMLKVHYEGKAICGTFTAE 79

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +AE KV QV  YSR++++PL C MEQ
Sbjct: 80  VAETKVAQVTMYSRENEHPLLCTMEQ 105


>gi|221134865|ref|ZP_03561168.1| ATP-dependent Clp protease adaptor protein ClpS [Glaciecola sp.
           HTCC2999]
          Length = 106

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 68/106 (64%), Gaps = 1/106 (0%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
           M+K+  +  D    +E     KV+ P +Y+V+L ND+YTPMEFV+ VL  FF  D E A 
Sbjct: 1   MSKENTSTIDEHKINE-SVEKKVQPPSMYKVILNNDDYTPMEFVVEVLCRFFNMDGEKAN 59

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            +ML VH+QG   CGVY  EIAE KV QV  Y+++HQ+PL C  EQ
Sbjct: 60  QVMLTVHYQGKAVCGVYTAEIAETKVMQVNQYAQKHQHPLLCSYEQ 105


>gi|212634694|ref|YP_002311219.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           piezotolerans WP3]
 gi|226706569|sp|B8CLI1|CLPS_SHEPW RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|212556178|gb|ACJ28632.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           piezotolerans WP3]
          Length = 102

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 62/84 (73%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+L ND+YTPM+FVI +LQ FF KD   A  IML +HH+G G CG+Y + IA
Sbjct: 18  LKQPSMYKVILNNDDYTPMDFVIEILQLFFRKDEAQATEIMLAIHHKGKGICGIYPFGIA 77

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E KV QV  ++RQ+++PL C +E+
Sbjct: 78  ETKVAQVNQFARQNEHPLLCSLEE 101


>gi|146311056|ref|YP_001176130.1| ATP-dependent Clp protease adaptor protein ClpS [Enterobacter sp.
           638]
 gi|167008655|sp|A4W8P9|CLPS_ENT38 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|145317932|gb|ABP60079.1| ATP-dependent Clp protease adaptor protein ClpS [Enterobacter sp.
           638]
          Length = 106

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 69/104 (66%), Gaps = 2/104 (1%)

Query: 34  KKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
           K    +FD   + +VR    ++ P +Y+V+L+ND+YTPMEFVI VLQ FF  D E A  +
Sbjct: 4   KNDWLDFDQLAEDKVR--DALKPPSMYKVMLMNDDYTPMEFVIDVLQKFFSYDVERATQL 61

Query: 94  MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           ML VH++G   CG++  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 62  MLTVHYRGKAICGIFTAEVAETKVAMVNEYARENEHPLLCTLEK 105


>gi|58582177|ref|YP_201193.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas oryzae
           pv. oryzae KACC10331]
 gi|58426771|gb|AAW75808.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 126

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/109 (48%), Positives = 70/109 (64%), Gaps = 1/109 (0%)

Query: 29  DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
           + RM +    E D+ L  E     +V  P  Y+VLL+ND+YTPM+FV+ VL+ FF  + E
Sbjct: 18  NGRMPRNTSHEHDHGLMVEAS-KPEVAPPPRYQVLLLNDDYTPMDFVVTVLEQFFNLNLE 76

Query: 89  TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            A  IML VH +G G CGVY+ E+AE KV QV  +SR +Q+PL C MEQ
Sbjct: 77  QATQIMLHVHTRGRGVCGVYSREVAESKVAQVNEFSRMNQHPLLCTMEQ 125


>gi|317047538|ref|YP_004115186.1| ATP-dependent Clp protease adaptor protein ClpS [Pantoea sp. At-9b]
 gi|316949155|gb|ADU68630.1| ATP-dependent Clp protease adaptor protein ClpS [Pantoea sp. At-9b]
          Length = 131

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 70/105 (66%), Gaps = 2/105 (1%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
           N      F++  + +VR    ++ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A  
Sbjct: 28  NTNDWLNFEHLAEDKVR--EGLKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDVERATQ 85

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +MLKVH+QG   CGV+  E+AE KV QV  Y+R++++PL C +E+
Sbjct: 86  LMLKVHYQGKAICGVFTAEVAETKVAQVNIYARENEHPLLCTLEK 130


>gi|269468372|gb|EEZ80037.1| hypothetical protein Sup05_1280 [uncultured SUP05 cluster
           bacterium]
          Length = 99

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 64/85 (75%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           KV+ P  ++VLL+ND+YT M+FV+ VL  FF K  E A+ IMLK+H +G G CGVY ++I
Sbjct: 12  KVKKPNRFQVLLLNDDYTTMDFVVEVLTKFFSKSEEAAQAIMLKIHLEGEGICGVYPHDI 71

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           A+ KV+QV+++SR+ + PL C++ +
Sbjct: 72  AQTKVSQVIDFSRKKEQPLMCVIRE 96


>gi|88703373|ref|ZP_01101089.1| ATP-dependent Clp protease adaptor protein ClpS [Congregibacter
           litoralis KT71]
 gi|88702087|gb|EAQ99190.1| ATP-dependent Clp protease adaptor protein ClpS [Congregibacter
           litoralis KT71]
          Length = 169

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 59/85 (69%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            KV+ P LY+V+L+ND+YTPMEFV+ +L+ FF  + E A  IML VH  G G CG+Y  +
Sbjct: 81  PKVKRPPLYKVVLLNDDYTPMEFVVEILEVFFKMNREQATQIMLTVHTHGKGVCGIYTKD 140

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIME 136
           IAE K  QV  Y+R HQ+PL C +E
Sbjct: 141 IAETKSAQVNQYARDHQHPLLCEIE 165


>gi|268680246|ref|YP_003304677.1| ATP-dependent Clp protease adaptor protein ClpS [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268618277|gb|ACZ12642.1| ATP-dependent Clp protease adaptor protein ClpS [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 102

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/84 (53%), Positives = 62/84 (73%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           +++ P+LY+VLL+ND+Y+ MEFVI VL   F+   E A  IML VH +G G CGVYAYEI
Sbjct: 17  EIKEPRLYKVLLLNDDYSSMEFVIKVLMQIFHHSFEKATEIMLSVHEKGKGLCGVYAYEI 76

Query: 113 AEMKVNQVMNYSRQHQYPLQCIME 136
           AE KV+QV   +++ ++PL+ IME
Sbjct: 77  AETKVSQVRKMAKEEKFPLRAIME 100


>gi|260779177|ref|ZP_05888069.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260605341|gb|EEX31636.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 106

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 62/86 (72%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           +KV+ P +Y V+L ND+YTPM+FVI +L+ FF  D + A  +MLKVH++G   CG +  E
Sbjct: 20  TKVKPPSMYNVVLNNDDYTPMDFVIEILERFFSMDIDKATQVMLKVHYEGKAICGTFTAE 79

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +AE KV QV  YS+++++PL C MEQ
Sbjct: 80  VAETKVAQVTMYSQENEHPLLCTMEQ 105


>gi|323493245|ref|ZP_08098374.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
           brasiliensis LMG 20546]
 gi|323312511|gb|EGA65646.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
           brasiliensis LMG 20546]
          Length = 106

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 62/86 (72%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           +KV+ P +Y V+L ND+YTPM+FVI +L+ FF  D + A  +ML+VH++G   CG Y  E
Sbjct: 20  TKVKPPSMYNVVLNNDDYTPMDFVIEILERFFSMDIDKATQVMLQVHYEGKAICGTYTAE 79

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +AE KV QV  YS+++++PL C MEQ
Sbjct: 80  VAETKVAQVTMYSKENEHPLLCTMEQ 105


>gi|254283858|ref|ZP_04958826.1| ATP-dependent Clp protease adaptor protein ClpS [gamma
           proteobacterium NOR51-B]
 gi|219680061|gb|EED36410.1| ATP-dependent Clp protease adaptor protein ClpS [gamma
           proteobacterium NOR51-B]
          Length = 132

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 60/85 (70%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            K++ P LYRV+L+ND+YTPMEFV+ VL+ FF  + + A  +ML VH QG G CG+Y  +
Sbjct: 41  PKLKRPPLYRVILLNDDYTPMEFVVEVLERFFSMNRDKATQVMLAVHTQGKGVCGIYPRD 100

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIME 136
           IAE K  QV   +++HQ+PL C +E
Sbjct: 101 IAETKAAQVNQCAKEHQHPLLCEVE 125


>gi|326405326|ref|YP_004285408.1| ATP-dependent Clp protease adaptor protein ClpS [Acidiphilium
           multivorum AIU301]
 gi|325052188|dbj|BAJ82526.1| ATP-dependent Clp protease adaptor protein ClpS [Acidiphilium
           multivorum AIU301]
          Length = 106

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 62/85 (72%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           ++ + P LYRV++ ND+YTPMEFV+  L   F K  + A  I L++H +G+G CG++ YE
Sbjct: 20  ARAKRPPLYRVMMFNDDYTPMEFVVATLVGLFGKTTDEAGRIALRIHRRGVGVCGIFTYE 79

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIME 136
           IAE K+ QV+  +R++Q+PLQC++E
Sbjct: 80  IAETKMIQVLELARENQHPLQCMIE 104


>gi|166712083|ref|ZP_02243290.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas oryzae
           pv. oryzicola BLS256]
          Length = 112

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 61/86 (70%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            +V  P  Y+VLL+ND+YTPM+FV+ VLQ FF  + E A  IML VH +G G CGVY+ E
Sbjct: 26  PEVAPPPRYQVLLLNDDYTPMDFVVTVLQQFFNLNLEQATQIMLHVHTRGRGVCGVYSRE 85

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +AE KV QV  +SR +Q+PL C MEQ
Sbjct: 86  VAESKVAQVNEFSRMNQHPLLCTMEQ 111


>gi|88860127|ref|ZP_01134766.1| modulator of ClpA substrate specificity [Pseudoalteromonas tunicata
           D2]
 gi|88818121|gb|EAR27937.1| modulator of ClpA substrate specificity [Pseudoalteromonas tunicata
           D2]
          Length = 105

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/85 (56%), Positives = 60/85 (70%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           K+R PK Y V+L ND+YTPM+FVI V+  FF K  E A  IMLKVH++G   CGVY+ EI
Sbjct: 20  KLRPPKQYHVILNNDDYTPMDFVIEVIMKFFNKTSEQAAEIMLKVHYEGKAVCGVYSAEI 79

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           AE KV QV  Y+R +++PL C  EQ
Sbjct: 80  AETKVAQVNQYARDNEHPLLCSYEQ 104


>gi|89901532|ref|YP_524003.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodoferax
           ferrireducens T118]
 gi|122478825|sp|Q21UT1|CLPS_RHOFD RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|89346269|gb|ABD70472.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodoferax
           ferrireducens T118]
          Length = 120

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/88 (48%), Positives = 64/88 (72%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R + K + P +Y+V+++ND+YTPMEFV+ V+Q FF KD E A  IMLK+H  G G CGVY
Sbjct: 29  RRTQKTKPPHMYQVVMLNDDYTPMEFVVVVIQEFFGKDLEAATRIMLKIHLDGKGVCGVY 88

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIME 136
           + ++A  KV+QV++ + +  +PL+CI E
Sbjct: 89  SKDVAATKVDQVLDAANKAGHPLKCISE 116


>gi|117619917|ref|YP_856387.1| ATP-dependent Clp protease adaptor protein ClpS [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|158512298|sp|A0KJD6|CLPS_AERHH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|117561324|gb|ABK38272.1| ATP-dependent Clp protease adaptor protein ClpS [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 105

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 61/86 (70%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           +K++ P +Y+V+L ND+YTPMEFV+ VLQ FF  D + A  +ML VH+ G G CG +  E
Sbjct: 19  TKLQPPPMYKVVLNNDDYTPMEFVVEVLQKFFGMDLDKATQVMLSVHYSGKGVCGTFTAE 78

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           IAE KV QV  Y+R +++PL C ME+
Sbjct: 79  IAETKVVQVNTYARNNEHPLLCTMEK 104


>gi|326316818|ref|YP_004234490.1| ATP-dependent Clp protease adaptor protein ClpS [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323373654|gb|ADX45923.1| ATP-dependent Clp protease adaptor protein ClpS [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 112

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 62/88 (70%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R + + + P++Y+V+++ND+YTPMEFVI VLQ FF KD E A  IMLK+H  G G CGVY
Sbjct: 22  RRTQRTQPPQMYQVVMLNDDYTPMEFVIVVLQEFFGKDREAATQIMLKIHLDGKGVCGVY 81

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIME 136
           + ++A  KV QV   + +  +PLQC+ E
Sbjct: 82  SRDVAATKVEQVREAAHKAGHPLQCLSE 109


>gi|120611897|ref|YP_971575.1| ATP-dependent Clp protease adaptor protein ClpS [Acidovorax
           citrulli AAC00-1]
 gi|158513033|sp|A1TS63|CLPS_ACIAC RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|120590361|gb|ABM33801.1| ATP-dependent Clp protease adaptor protein ClpS [Acidovorax
           citrulli AAC00-1]
          Length = 122

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 62/88 (70%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R + + + P++Y+V+++ND+YTPMEFVI VLQ FF KD E A  IMLK+H  G G CGVY
Sbjct: 32  RRTQRTQPPQMYQVVMLNDDYTPMEFVIVVLQEFFGKDREAATQIMLKIHLDGKGVCGVY 91

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIME 136
           + ++A  KV QV   + +  +PLQC+ E
Sbjct: 92  SRDVAATKVEQVREAAHKAGHPLQCLSE 119


>gi|330829987|ref|YP_004392939.1| ATP-dependent Clp protease adapter protein clpS [Aeromonas veronii
           B565]
 gi|328805123|gb|AEB50322.1| ATP-dependent Clp protease adapter protein clpS [Aeromonas veronii
           B565]
          Length = 105

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 62/86 (72%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           +K++ P +Y+V+L ND+YTPMEFV+ VLQ FF  D + A  +ML VH+ G G CG++  E
Sbjct: 19  TKLQPPPMYKVVLNNDDYTPMEFVVEVLQKFFGMDLDKATQVMLSVHYSGKGVCGMFTAE 78

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           IAE KV QV  Y+R +++PL C ME+
Sbjct: 79  IAETKVVQVNTYARNNEHPLLCTMEK 104


>gi|224436508|ref|ZP_03657522.1| hypothetical protein HcinC1_01115 [Helicobacter cinaedi CCUG 18818]
          Length = 105

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 63/102 (61%)

Query: 36  GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
             + FD   +S     + +  PKLYRVLL+ND++T M FV H+L   F K  + A+ I L
Sbjct: 2   AFSSFDTSFESWTHTGTMLEEPKLYRVLLLNDDWTAMNFVTHILMEVFDKTSQEARAITL 61

Query: 96  KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           KVH++G G CG+Y Y+IAE+K   V   +++  YPL+ I E+
Sbjct: 62  KVHNEGKGVCGIYPYDIAELKTQLVSQKAKEQGYPLRVITEE 103


>gi|270159871|ref|ZP_06188527.1| ATP-dependent Clp protease adaptor protein ClpS [Legionella
           longbeachae D-4968]
 gi|289165375|ref|YP_003455513.1| regulatory protein for ClpA substrate specificity [Legionella
           longbeachae NSW150]
 gi|269988210|gb|EEZ94465.1| ATP-dependent Clp protease adaptor protein ClpS [Legionella
           longbeachae D-4968]
 gi|288858548|emb|CBJ12429.1| regulatory protein for ClpA substrate specificity [Legionella
           longbeachae NSW150]
          Length = 107

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 46/93 (49%), Positives = 68/93 (73%)

Query: 46  SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
           +E   SS+++VP+ Y+V+L+ND+YTPM+FV+ VL++FF+   E A  IML+VH QG G C
Sbjct: 15  AEPEMSSEIKVPRKYKVVLLNDDYTPMDFVVDVLKHFFHLSEEMAVQIMLQVHFQGKGVC 74

Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           GV+  +IAE KV  V  Y+R++Q+PL   ME +
Sbjct: 75  GVFTRDIAETKVALVNEYARRNQHPLLSSMEPE 107


>gi|54308344|ref|YP_129364.1| ATP-dependent Clp protease adaptor protein ClpS [Photobacterium
           profundum SS9]
 gi|67460286|sp|Q6LT14|CLPS_PHOPR RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|46912772|emb|CAG19562.1| conserved hypothetical protein [Photobacterium profundum SS9]
          Length = 106

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 72/108 (66%), Gaps = 4/108 (3%)

Query: 30  SRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
           S++ +  I E D  LD E     +V+ P +Y+V+L ND+YTPM+FVI VLQ FF  D E 
Sbjct: 2   SKLYEWIIPESD-VLDKE---EVQVKPPAMYKVVLNNDDYTPMDFVIEVLQKFFSMDMEK 57

Query: 90  AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           A  +ML VH++G   CG +  E+AE KV QVM ++R++++PL C ME+
Sbjct: 58  ATQLMLNVHYEGKAICGTFTAEVAETKVAQVMMHARENEHPLLCTMEK 105


>gi|308272838|emb|CBX29442.1| ATP-dependent Clp protease adapter protein clpS [uncultured
           Desulfobacterium sp.]
          Length = 105

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 66/100 (66%), Gaps = 2/100 (2%)

Query: 38  AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
            E +  + SE R   +++ P +++VLL ND+YT M+FV+ +L   FYK  E A  IML V
Sbjct: 7   PEIEESITSETR--KEIKEPSMFKVLLHNDDYTTMDFVVEILMRVFYKSIEEAIQIMLNV 64

Query: 98  HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           H QG+G CG+Y YEIAE K+N V + SR   +PL+C +E+
Sbjct: 65  HRQGMGVCGLYTYEIAETKMNSVHSLSRDRGFPLRCSIEK 104


>gi|325919554|ref|ZP_08181568.1| hypothetical protein XGA_0507 [Xanthomonas gardneri ATCC 19865]
 gi|325549963|gb|EGD20803.1| hypothetical protein XGA_0507 [Xanthomonas gardneri ATCC 19865]
          Length = 106

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 68/106 (64%), Gaps = 1/106 (0%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
           M +    E+D+ L  E     +V  P  Y+VLL+ND+YTPM+FV+ VL+ FF    E A 
Sbjct: 1   MPRNTTHEYDHGLMVEAS-KPEVAPPPRYQVLLLNDDYTPMDFVVTVLEQFFNLSLEQAT 59

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            +ML VH +G G CGVY+ E+AE KV QV  +SR +Q+PL C MEQ
Sbjct: 60  QVMLHVHTRGRGVCGVYSREVAESKVAQVNEFSRMNQHPLLCTMEQ 105


>gi|242239694|ref|YP_002987875.1| ATP-dependent Clp protease adaptor protein ClpS [Dickeya dadantii
           Ech703]
 gi|242131751|gb|ACS86053.1| ATP-dependent Clp protease adaptor protein ClpS [Dickeya dadantii
           Ech703]
          Length = 106

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 45/84 (53%), Positives = 62/84 (73%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A  +ML VH+QG   CGVY+ E+A
Sbjct: 22  LQPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQLMLTVHYQGKAICGVYSAEVA 81

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E KV QV  Y+R++++PL C +E+
Sbjct: 82  ETKVAQVNRYARENEHPLLCTLEK 105


>gi|261252480|ref|ZP_05945053.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio orientalis
           CIP 102891]
 gi|260935871|gb|EEX91860.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio orientalis
           CIP 102891]
          Length = 106

 Score = 97.4 bits (241), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 61/86 (70%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           +KV+ P +Y V+L ND+YTPM+FVI +L+ FF  D + A  +ML+VH++G   CG Y  E
Sbjct: 20  TKVKPPSMYNVVLNNDDYTPMDFVIEILERFFSMDIDKATQVMLQVHYEGKAICGTYTAE 79

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +AE KV QV  YS ++++PL C MEQ
Sbjct: 80  VAETKVAQVTMYSTENEHPLLCTMEQ 105


>gi|220904698|ref|YP_002480010.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868997|gb|ACL49332.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 106

 Score = 97.4 bits (241), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 45/93 (48%), Positives = 63/93 (67%)

Query: 45  DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
           +S+V    K++ P  YRVLL ND+YT M+FV+ VL + F K  + A  IML VH QG+G+
Sbjct: 12  ESQVIVEKKLKEPDRYRVLLHNDDYTSMDFVVAVLCSIFNKTTQEATAIMLNVHQQGVGQ 71

Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           CGVY +E+AE KV +V   +R   +PL+C ME+
Sbjct: 72  CGVYTHEVAETKVKRVHQAARAAGFPLKCTMEK 104


>gi|254786019|ref|YP_003073448.1| ATP-dependent Clp protease adaptor protein ClpS [Teredinibacter
           turnerae T7901]
 gi|237686070|gb|ACR13334.1| Sua5/YciO/YrdC/YwlC [Teredinibacter turnerae T7901]
          Length = 124

 Score = 97.4 bits (241), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 63/84 (75%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           +++ P +Y+V+L+ND+YTPMEFV+HVL++FF  D E A  +ML VH +G   CGVY+ ++
Sbjct: 33  RLKKPPMYKVVLLNDDYTPMEFVVHVLESFFNMDREKATHVMLTVHTKGKAVCGVYSRDV 92

Query: 113 AEMKVNQVMNYSRQHQYPLQCIME 136
           AE K  QV  ++RQ+++PL C +E
Sbjct: 93  AETKAMQVNQFARQNEHPLLCEIE 116


>gi|308186236|ref|YP_003930367.1| ATP-dependent Clp protease adaptor protein [Pantoea vagans C9-1]
 gi|308056746|gb|ADO08918.1| ATP-dependent Clp protease adaptor protein [Pantoea vagans C9-1]
          Length = 126

 Score = 97.4 bits (241), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 70/109 (64%), Gaps = 2/109 (1%)

Query: 29  DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
           ++  N      F++  + +VR    ++ P +Y+V+L ND+YTPMEFVI V+Q FF  D E
Sbjct: 19  NTMANTNDWLNFEHLAEDKVR--EGLKPPSMYKVILNNDDYTPMEFVIDVVQKFFSYDVE 76

Query: 89  TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            A  +MLKVH+ G   CGV+  E+AE K  QV NY+R++ +PL C +E+
Sbjct: 77  RATQLMLKVHYHGKAICGVFTAEVAETKAAQVNNYARENHHPLLCTLEK 125


>gi|227329247|ref|ZP_03833271.1| ATP-dependent Clp protease adaptor protein ClpS [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 106

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 62/85 (72%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           K++ P +Y V+L ND+YTPMEFVI VLQ FF  D E A  +ML VH+QG   CGV++ E+
Sbjct: 21  KLQPPSMYNVVLNNDDYTPMEFVIDVLQKFFSYDIERATQLMLTVHYQGKAICGVFSAEV 80

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           AE KV QV  Y+R++++PL C +E+
Sbjct: 81  AETKVVQVNRYARENEHPLLCTLEK 105


>gi|227112014|ref|ZP_03825670.1| ATP-dependent Clp protease adaptor protein ClpS [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
 gi|253688098|ref|YP_003017288.1| ATP-dependent Clp protease adaptor protein ClpS [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|261821257|ref|YP_003259363.1| ATP-dependent Clp protease adaptor protein ClpS [Pectobacterium
           wasabiae WPP163]
 gi|259491248|sp|C6DF43|CLPS_PECCP RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|251754676|gb|ACT12752.1| ATP-dependent Clp protease adaptor protein ClpS [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|261605270|gb|ACX87756.1| ATP-dependent Clp protease adaptor protein ClpS [Pectobacterium
           wasabiae WPP163]
          Length = 106

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 62/85 (72%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           K++ P +Y V+L ND+YTPMEFVI VLQ FF  D E A  +ML VH+QG   CGV++ E+
Sbjct: 21  KLQPPSMYNVVLNNDDYTPMEFVIDVLQKFFSYDIERATQLMLTVHYQGKAICGVFSAEV 80

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           AE KV QV  Y+R++++PL C +E+
Sbjct: 81  AETKVVQVNRYARENEHPLLCTLEK 105


>gi|54293794|ref|YP_126209.1| hypothetical protein lpl0850 [Legionella pneumophila str. Lens]
 gi|148360536|ref|YP_001251743.1| ATP-dependent Clp protease adaptor protein [Legionella pneumophila
           str. Corby]
 gi|296106398|ref|YP_003618098.1| ATP-dependent Clp protease adaptor protein ClpS [Legionella
           pneumophila 2300/99 Alcoy]
 gi|67460217|sp|Q5WY89|CLPS_LEGPL RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|166214737|sp|A5IG97|CLPS_LEGPC RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|53753626|emb|CAH15084.1| hypothetical protein lpl0850 [Legionella pneumophila str. Lens]
 gi|148282309|gb|ABQ56397.1| ATP-dependent Clp protease adaptor protein [Legionella pneumophila
           str. Corby]
 gi|295648299|gb|ADG24146.1| ATP-dependent Clp protease adaptor protein ClpS [Legionella
           pneumophila 2300/99 Alcoy]
 gi|307609611|emb|CBW99113.1| hypothetical protein LPW_08981 [Legionella pneumophila 130b]
          Length = 111

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 72/103 (69%), Gaps = 4/103 (3%)

Query: 34  KKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
           + GIA  D  L +E+  S+ ++ P+ Y+VLL+ND+YTPM+FV+ VL++FF+ + E A  +
Sbjct: 11  QTGIA--DTELSTEI--STAIKRPRKYKVLLLNDDYTPMDFVVEVLKHFFHLNEEVAIQV 66

Query: 94  MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
           ML+VH QG G CGV+  +IAE KV  V  Y+R +Q+PL   ME
Sbjct: 67  MLQVHFQGKGVCGVFTRDIAETKVALVNEYARMNQHPLLSSME 109


>gi|194365699|ref|YP_002028309.1| ATP-dependent Clp protease adaptor protein ClpS [Stenotrophomonas
           maltophilia R551-3]
 gi|238693433|sp|B4SIN7|CLPS_STRM5 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|194348503|gb|ACF51626.1| ATP-dependent Clp protease adaptor protein ClpS [Stenotrophomonas
           maltophilia R551-3]
          Length = 108

 Score = 97.1 bits (240), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 60/86 (69%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            +V  P  Y+V+L+ND+YTPM+FV+ VLQ FF  D + A  +ML VH +G G CGV+  E
Sbjct: 22  PEVAPPPFYQVMLLNDDYTPMDFVVDVLQQFFTMDLDKATQVMLHVHTRGRGVCGVFTRE 81

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +AE KV QV  YSR +Q+PL C ME+
Sbjct: 82  VAETKVAQVNEYSRMNQHPLLCTMEK 107


>gi|254428859|ref|ZP_05042566.1| ATP-dependent Clp protease adaptor protein ClpS [Alcanivorax sp.
           DG881]
 gi|196195028|gb|EDX89987.1| ATP-dependent Clp protease adaptor protein ClpS [Alcanivorax sp.
           DG881]
          Length = 94

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 62/86 (72%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            K++ P +Y+VL++ND+YTPM+FV+ +L++FF    E A  +ML VH +G   CGVY  +
Sbjct: 8   PKLKPPSMYKVLMLNDDYTPMDFVVEILEDFFNLGREQATRVMLTVHTEGKAVCGVYPQD 67

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           IAE K  QV+ Y+R++Q+PL C +EQ
Sbjct: 68  IAETKATQVVEYARENQHPLMCQVEQ 93


>gi|52841053|ref|YP_094852.1| ATP-dependent Clp protease adaptor protein ClpS [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|54296838|ref|YP_123207.1| ATP-dependent Clp protease adaptor protein ClpS [Legionella
           pneumophila str. Paris]
 gi|67460221|sp|Q5X6T6|CLPS_LEGPA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|67460231|sp|Q5ZXB5|CLPS_LEGPH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|52628164|gb|AAU26905.1| hypothetical protein lpg0817 [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|53750623|emb|CAH12030.1| hypothetical protein lpp0879 [Legionella pneumophila str. Paris]
          Length = 111

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 72/103 (69%), Gaps = 4/103 (3%)

Query: 34  KKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
           + GIA  D  L +E+  S+ ++ P+ Y+VLL+ND+YTPM+FV+ VL++FF+ + E A  +
Sbjct: 11  QTGIA--DTELSTEI--STAIKRPRKYKVLLLNDDYTPMDFVVEVLKHFFHLNEEVAIQV 66

Query: 94  MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
           ML+VH QG G CGV+  +IAE KV  V  Y+R +Q+PL   ME
Sbjct: 67  MLQVHFQGKGVCGVFTRDIAETKVALVNEYARMNQHPLLSSME 109


>gi|291613434|ref|YP_003523591.1| ATP-dependent Clp protease adaptor protein ClpS [Sideroxydans
           lithotrophicus ES-1]
 gi|291583546|gb|ADE11204.1| ATP-dependent Clp protease adaptor protein ClpS [Sideroxydans
           lithotrophicus ES-1]
          Length = 100

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 63/86 (73%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           SK + PKLY+V+L+ND++T MEFVI VL+ FF    E A  +ML++H++G   CGVY  +
Sbjct: 14  SKTKPPKLYKVILLNDDFTTMEFVIEVLRIFFSMGQERATQVMLQIHNEGSAVCGVYPKD 73

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           IAE KV+QV  +++QH +PL+C  E+
Sbjct: 74  IAETKVSQVSEFAKQHGHPLRCQTEE 99


>gi|152990128|ref|YP_001355850.1| ATP-dependent Clp protease, adaptor protein ClpS [Nitratiruptor sp.
           SB155-2]
 gi|151421989|dbj|BAF69493.1| ATP-dependent Clp protease, adaptor protein ClpS [Nitratiruptor sp.
           SB155-2]
          Length = 97

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 64/92 (69%)

Query: 47  EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
           E +   K+  PK Y+V L+ND+YT M+FV+ +L + F K +E A  IML +H QG G CG
Sbjct: 6   ETKEVVKLEEPKKYKVFLLNDDYTTMDFVVDILCDIFDKSYEEAVNIMLTIHRQGKGLCG 65

Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           +Y YEIAE K++QV   +R H++PL+ +ME++
Sbjct: 66  IYTYEIAETKIDQVHRLARAHEFPLKAVMEEE 97


>gi|209695650|ref|YP_002263579.1| ATP-dependent Clp protease adaptor protein ClpS [Aliivibrio
           salmonicida LFI1238]
 gi|238066649|sp|B6EIX3|CLPS_ALISL RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|208009602|emb|CAQ79898.1| ATP-dependent Clp protease adaptor protein ClpS [Aliivibrio
           salmonicida LFI1238]
          Length = 106

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 60/86 (69%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           + ++ P +Y+V+L ND+YTPMEFV+ VL  FF  D E A  +ML VH++G   CGV+  E
Sbjct: 20  TGLKPPPMYKVVLNNDDYTPMEFVVEVLDKFFSMDLEKATQLMLTVHYEGKAVCGVFTAE 79

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +AE KV QV  YSR +++PL C MEQ
Sbjct: 80  VAETKVAQVNIYSRDNEHPLLCTMEQ 105


>gi|304397051|ref|ZP_07378930.1| ATP-dependent Clp protease adaptor protein ClpS [Pantoea sp. aB]
 gi|304355200|gb|EFM19568.1| ATP-dependent Clp protease adaptor protein ClpS [Pantoea sp. aB]
          Length = 106

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 68/105 (64%), Gaps = 2/105 (1%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
           N      F++  + +VR    ++ P +Y+V+L ND+YTPMEFVI V+Q FF  D E A  
Sbjct: 3   NTNDWLNFEHLAEDKVR--EGLKPPSMYKVILNNDDYTPMEFVIDVVQKFFSYDVERATQ 60

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +MLKVH+ G   CGV+  E+AE K  QV NY+R++ +PL C +E+
Sbjct: 61  LMLKVHYHGKAICGVFTAEVAETKAAQVNNYARENHHPLLCTLEK 105


>gi|190574283|ref|YP_001972128.1| putative ATP-dependent Clp protease adaptor protein ClpS
           [Stenotrophomonas maltophilia K279a]
 gi|229889824|sp|B2FQX5|CLPS_STRMK RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|190012205|emb|CAQ45828.1| putative ATP-dependent Clp protease adaptor protein ClpS
           [Stenotrophomonas maltophilia K279a]
          Length = 108

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 60/86 (69%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            +V  P  Y+V+L+ND+YTPM+FV+ VLQ FF  D + A  +ML VH +G G CGV+  E
Sbjct: 22  PEVAPPPFYQVMLLNDDYTPMDFVVDVLQQFFSMDLDKATQVMLHVHTRGRGVCGVFTRE 81

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +AE KV QV  YSR +Q+PL C ME+
Sbjct: 82  VAETKVAQVNEYSRMNQHPLLCTMEK 107


>gi|192360778|ref|YP_001983029.1| ATP-dependent Clp protease adaptor protein ClpS [Cellvibrio
           japonicus Ueda107]
 gi|190686943|gb|ACE84621.1| ATP-dependent Clp protease adaptor protein clpS [Cellvibrio
           japonicus Ueda107]
          Length = 125

 Score = 97.1 bits (240), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 65/104 (62%), Gaps = 1/104 (0%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
           N     E D  L + V    K++ P +Y+V+L+ND+YTPM+FV+H+L+ FF    E A  
Sbjct: 15  NDDSAGESDGGL-AVVTAKPKLKRPSMYKVVLLNDDYTPMDFVVHILETFFSMTREKATH 73

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
           +ML VH  G   CG+Y  +IAE K  QV  YSR++Q+PL C +E
Sbjct: 74  VMLTVHVHGKAVCGIYTRDIAETKAAQVNQYSRENQHPLLCEIE 117


>gi|188534289|ref|YP_001908086.1| ATP-dependent Clp protease adaptor protein ClpS [Erwinia
           tasmaniensis Et1/99]
 gi|238689683|sp|B2VC66|CLPS_ERWT9 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|188029331|emb|CAO97208.1| ATP-dependent Clp protease adaptor protein [Erwinia tasmaniensis
           Et1/99]
          Length = 106

 Score = 97.1 bits (240), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 46/98 (46%), Positives = 66/98 (67%), Gaps = 2/98 (2%)

Query: 40  FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
           F+   D +VR   +++ P +Y+V+L ND++TPMEFVI VLQ FF  D E A  +ML VH+
Sbjct: 10  FEQLADDKVR--EELKPPSMYKVILNNDDFTPMEFVIDVLQKFFSYDIERATQLMLTVHY 67

Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           QG   CGV+  E+AE KV  V  Y+R +++PL C +E+
Sbjct: 68  QGKAICGVFTAEVAETKVAHVNKYARDNEHPLLCTLEK 105


>gi|188576738|ref|YP_001913667.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas oryzae
           pv. oryzae PXO99A]
 gi|188576929|ref|YP_001913858.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas oryzae
           pv. oryzae PXO99A]
 gi|325927856|ref|ZP_08189080.1| hypothetical protein XPE_3120 [Xanthomonas perforans 91-118]
 gi|188521190|gb|ACD59135.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas oryzae
           pv. oryzae PXO99A]
 gi|188521381|gb|ACD59326.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas oryzae
           pv. oryzae PXO99A]
 gi|325541696|gb|EGD13214.1| hypothetical protein XPE_3120 [Xanthomonas perforans 91-118]
          Length = 93

 Score = 96.7 bits (239), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 47/86 (54%), Positives = 61/86 (70%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            +V  P  Y+VLL+ND+YTPM+FV+ VL+ FF  + E A  IML VH +G G CGVY+ E
Sbjct: 7   PEVAPPPRYQVLLLNDDYTPMDFVVTVLEQFFNLNLEQATQIMLHVHTRGRGVCGVYSRE 66

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +AE KV QV  +SR +Q+PL C MEQ
Sbjct: 67  VAESKVAQVNEFSRMNQHPLLCTMEQ 92


>gi|261856347|ref|YP_003263630.1| ATP-dependent Clp protease adaptor protein ClpS [Halothiobacillus
           neapolitanus c2]
 gi|261836816|gb|ACX96583.1| ATP-dependent Clp protease adaptor protein ClpS [Halothiobacillus
           neapolitanus c2]
          Length = 104

 Score = 96.7 bits (239), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 64/92 (69%)

Query: 45  DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
           D+E    + V  P +Y+V+L+ND++TPM+FVI +L   FY   E A+ +ML+VHH+G G 
Sbjct: 9   DTESIPEAIVAEPPMYQVILLNDDFTPMDFVIRILVELFYLSTEQAERVMLEVHHKGRGV 68

Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
           CG++  EIAE +V QV   +RQ+ +PL C+ME
Sbjct: 69  CGIFTREIAETRVAQVNQVARQNDHPLLCVME 100


>gi|160898941|ref|YP_001564523.1| ATP-dependent Clp protease adaptor protein ClpS [Delftia
           acidovorans SPH-1]
 gi|160364525|gb|ABX36138.1| ATP-dependent Clp protease adaptor protein ClpS [Delftia
           acidovorans SPH-1]
          Length = 125

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/88 (48%), Positives = 63/88 (71%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R   +V+ P++Y+V+++ND++TPMEFVI VLQ  F KD ETA  IMLK+H  G G CGVY
Sbjct: 35  RRRQRVQPPQMYQVVMLNDDFTPMEFVIIVLQELFGKDRETATQIMLKIHLDGRGVCGVY 94

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIME 136
           + ++A  KV QV+  +++  +PLQ + E
Sbjct: 95  SRDVAATKVEQVLQAAQKAGHPLQAMFE 122


>gi|87122218|ref|ZP_01078101.1| hypothetical protein MED121_05518 [Marinomonas sp. MED121]
 gi|86162538|gb|EAQ63820.1| hypothetical protein MED121_05518 [Marinomonas sp. MED121]
          Length = 114

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 66/87 (75%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
            ++++ P +Y+V+L+ND++TPM+FV+ VLQ FFY D E A+ +ML+VH++G G CGVY +
Sbjct: 26  ETELKPPSMYQVVLLNDDFTPMDFVVFVLQKFFYMDGEKAQKVMLEVHNKGKGVCGVYPF 85

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +IAE KV  V  +  Q+++PL C +++
Sbjct: 86  DIAETKVAMVQQFVEQNEHPLMCDLQK 112


>gi|254514303|ref|ZP_05126364.1| Sua5/YciO/YrdC/YwlC [gamma proteobacterium NOR5-3]
 gi|219676546|gb|EED32911.1| Sua5/YciO/YrdC/YwlC [gamma proteobacterium NOR5-3]
          Length = 134

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 60/85 (70%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            +++ P LY+V+L+ND+YTPMEFV+ VL+ FF  + E A  +ML VH QG G CG+Y  +
Sbjct: 46  PQLKRPPLYKVVLLNDDYTPMEFVVEVLEVFFKMNREQATQVMLTVHTQGKGVCGIYTKD 105

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIME 136
           IAE K  QV  ++R HQ+PL C +E
Sbjct: 106 IAETKSAQVNQFARDHQHPLLCEIE 130


>gi|88812888|ref|ZP_01128132.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrococcus
           mobilis Nb-231]
 gi|88789810|gb|EAR20933.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrococcus
           mobilis Nb-231]
          Length = 106

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 61/86 (70%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
             +V+ P LYRV+L+ND+YTPMEFV+ VLQ FF+ D   A  IML VH +G G CGVY  
Sbjct: 19  EPQVKRPPLYRVVLLNDDYTPMEFVVEVLQIFFHMDRGKATQIMLHVHTRGKGVCGVYNR 78

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIME 136
           ++AE KV+ V  ++R++ +PL C ME
Sbjct: 79  DVAETKVDLVNEHARKNDHPLMCTME 104


>gi|50121581|ref|YP_050748.1| ATP-dependent Clp protease adaptor protein ClpS [Pectobacterium
           atrosepticum SCRI1043]
 gi|67460269|sp|Q6D3T7|CLPS_ERWCT RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|49612107|emb|CAG75557.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 106

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 61/85 (71%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           K++ P +Y V+L ND+YTPMEFVI VLQ FF  D E A  +ML VH+QG   CGV++ E+
Sbjct: 21  KLQPPSMYNVVLNNDDYTPMEFVIDVLQKFFSYDIERATQLMLTVHYQGKAICGVFSAEV 80

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           AE KV QV  Y+R+++ PL C +E+
Sbjct: 81  AETKVVQVNRYARENEQPLLCTLEK 105


>gi|262372530|ref|ZP_06065809.1| substrate modulator for ClpAP [Acinetobacter junii SH205]
 gi|262312555|gb|EEY93640.1| substrate modulator for ClpAP [Acinetobacter junii SH205]
          Length = 136

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/88 (48%), Positives = 61/88 (69%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
             +++ P LY V+L+ND+YTPM+FVI +LQ++F  D + A  +ML VH++G G  GVY  
Sbjct: 48  PPELKRPPLYAVVLLNDDYTPMDFVIEILQSYFGMDFDQASQVMLTVHYEGKGTAGVYPR 107

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           +IAE K NQV NY+R   +PL C +E K
Sbjct: 108 DIAETKANQVNNYARSQGHPLLCQIEPK 135


>gi|21242744|ref|NP_642326.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|84624070|ref|YP_451442.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas oryzae
           pv. oryzae MAFF 311018]
 gi|289666027|ref|ZP_06487608.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
           campestris pv. vasculorum NCPPB702]
 gi|289670485|ref|ZP_06491560.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
           campestris pv. musacearum NCPPB4381]
 gi|294625258|ref|ZP_06703897.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|294666594|ref|ZP_06731833.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
 gi|24638421|sp|Q8PL06|CLPS_XANAC RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|67460158|sp|Q5GZR3|CLPS_XANOR RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|123521875|sp|Q2P2Q9|CLPS_XANOM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|21108222|gb|AAM36862.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|84368010|dbj|BAE69168.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|292600432|gb|EFF44530.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292603614|gb|EFF47026.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 106

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 68/106 (64%), Gaps = 1/106 (0%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
           M +    E D+ L  E     +V  P  Y+VLL+ND+YTPM+FV+ VL+ FF  + E A 
Sbjct: 1   MPRNTSHEHDHGLMVEAS-KPEVAPPPRYQVLLLNDDYTPMDFVVTVLEQFFNLNLEQAT 59

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            IML VH +G G CGVY+ E+AE KV QV  +SR +Q+PL C MEQ
Sbjct: 60  QIMLHVHTRGRGVCGVYSREVAESKVAQVNEFSRMNQHPLLCTMEQ 105


>gi|310767160|gb|ADP12110.1| ATP-dependent Clp protease adaptor protein ClpS [Erwinia sp.
           Ejp617]
          Length = 106

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/98 (46%), Positives = 65/98 (66%), Gaps = 2/98 (2%)

Query: 40  FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
           F+   D +VR    ++ P +Y+V+L ND++TPMEFVI VLQ FF  D E A  +ML VH+
Sbjct: 10  FEQLADDKVR--EALKPPSMYKVILNNDDFTPMEFVIDVLQKFFSYDIERATQLMLTVHY 67

Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           QG   CGV+  E+AE KV  V  Y+R +++PL C +E+
Sbjct: 68  QGKAICGVFTAEVAETKVAHVNKYARDNEHPLLCTLEK 105


>gi|90415922|ref|ZP_01223855.1| hypothetical protein GB2207_01777 [marine gamma proteobacterium
           HTCC2207]
 gi|90332296|gb|EAS47493.1| hypothetical protein GB2207_01777 [marine gamma proteobacterium
           HTCC2207]
          Length = 114

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 58/85 (68%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            K++ P +++V+L+ND+YTPMEFV+ +L+ FF K  E A  IML +H  G G CG+Y  +
Sbjct: 23  PKLKKPSMFKVVLLNDDYTPMEFVVELLEKFFSKTRENATRIMLSIHTDGKGVCGIYTKD 82

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIME 136
           +AE K   V  YSR HQ+PL C +E
Sbjct: 83  VAETKAGTVNQYSRDHQHPLLCEVE 107


>gi|238757595|ref|ZP_04618779.1| ATP-dependent Clp protease adapter protein clpS [Yersinia aldovae
           ATCC 35236]
 gi|238704100|gb|EEP96633.1| ATP-dependent Clp protease adapter protein clpS [Yersinia aldovae
           ATCC 35236]
          Length = 106

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 62/89 (69%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           ++   ++ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A  +ML VH+QG   CGV+
Sbjct: 17  KYKEALKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQLMLNVHYQGKAICGVF 76

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             E+AE KV  V  Y+R++++PL C +E+
Sbjct: 77  TAEVAETKVAHVNQYARENEHPLLCTLEK 105


>gi|171058346|ref|YP_001790695.1| ATP-dependent Clp protease adaptor protein ClpS [Leptothrix
           cholodnii SP-6]
 gi|238689087|sp|B1XY29|CLPS_LEPCP RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|170775791|gb|ACB33930.1| ATP-dependent Clp protease adaptor protein ClpS [Leptothrix
           cholodnii SP-6]
          Length = 115

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 59/84 (70%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           +V  P++Y+V+++ND++TPMEFV+ VLQ FF  D E A  IMLK+HH+G   CGVY  ++
Sbjct: 30  RVEPPRVYQVVMLNDDFTPMEFVVMVLQQFFRHDLEAATQIMLKIHHEGRAVCGVYTQDV 89

Query: 113 AEMKVNQVMNYSRQHQYPLQCIME 136
           A  KV  V   +R+  +PLQC ME
Sbjct: 90  AATKVEMVQAAARRAGHPLQCTME 113


>gi|298530330|ref|ZP_07017732.1| ATP-dependent Clp protease adaptor protein ClpS
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509704|gb|EFI33608.1| ATP-dependent Clp protease adaptor protein ClpS
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 104

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 62/100 (62%), Gaps = 1/100 (1%)

Query: 39  EFDNCLDSEVRFSSK-VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
           E    L S    S + ++ P+ Y+VLL ND+YT MEFV+HVLQ  F+K    A  IML V
Sbjct: 4   ELTGTLPSPGTVSEEEIKEPQRYKVLLHNDDYTTMEFVVHVLQKVFHKTESEAMHIMLSV 63

Query: 98  HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           H  G G CG+Y  E+AE KV  V + +R+  YPL+C ME+
Sbjct: 64  HKNGTGVCGIYTGEVAETKVAMVTSMARKKGYPLKCTMEE 103


>gi|242279301|ref|YP_002991430.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
           salexigens DSM 2638]
 gi|242122195|gb|ACS79891.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
           salexigens DSM 2638]
          Length = 102

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 66/101 (65%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           +AE+    +S+V    +++ P+ +RVLL ND+YT MEFV+ VL   F K  E +  IML+
Sbjct: 1   MAEYKENFESDVLLEDELKEPRKFRVLLHNDDYTSMEFVVAVLMQVFRKTEEESTKIMLQ 60

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           VH+ G+G CGVY  E+AE +V  V   ++Q  YPL+C +E+
Sbjct: 61  VHNDGVGVCGVYTAEVAETRVEMVKQLAQQAGYPLKCTIEE 101


>gi|119470167|ref|ZP_01612933.1| modulator of ClpA substrate specificity [Alteromonadales bacterium
           TW-7]
 gi|119446588|gb|EAW27862.1| modulator of ClpA substrate specificity [Alteromonadales bacterium
           TW-7]
          Length = 105

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/109 (45%), Positives = 69/109 (63%), Gaps = 5/109 (4%)

Query: 30  SRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
           S M   G+   D   DSE     K++ P+ Y+V+L ND+YTPM+FVI VL  FF  D + 
Sbjct: 2   SGMKDSGV--IDTVRDSE---KQKLQPPRKYKVVLNNDDYTPMDFVIEVLTTFFNMDSDR 56

Query: 90  AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           A  +ML+VH +G G CGVY+ ++A  KV QV  YSR +++PL C  EQ+
Sbjct: 57  ATDVMLQVHEKGKGICGVYSADVAYTKVEQVNRYSRDNEHPLLCSCEQE 105


>gi|307130779|ref|YP_003882795.1| regulatory protein for ClpA substrate specificity [Dickeya dadantii
           3937]
 gi|306528308|gb|ADM98238.1| regulatory protein for ClpA substrate specificity [Dickeya dadantii
           3937]
          Length = 106

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/87 (50%), Positives = 62/87 (71%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
           +  ++ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A  +ML VH+ G   CGVY+ 
Sbjct: 19  AEALQPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQLMLTVHYHGKAICGVYSA 78

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           E+AE KV QV  Y+R++++PL C +E+
Sbjct: 79  EVAETKVAQVNRYARENEHPLLCTLEK 105


>gi|292487808|ref|YP_003530683.1| ATP-dependent Clp protease adaptor protein ClpS [Erwinia amylovora
           CFBP1430]
 gi|292899037|ref|YP_003538406.1| ATP-dependent Clp protease adaptor protein [Erwinia amylovora ATCC
           49946]
 gi|291198885|emb|CBJ45995.1| ATP-dependent Clp protease adaptor protein [Erwinia amylovora ATCC
           49946]
 gi|291553230|emb|CBA20275.1| ATP-dependent Clp protease adaptor protein ClpS [Erwinia amylovora
           CFBP1430]
 gi|312171926|emb|CBX80183.1| ATP-dependent Clp protease adaptor protein ClpS [Erwinia amylovora
           ATCC BAA-2158]
          Length = 106

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 63/92 (68%)

Query: 46  SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
           +E +   +++ P +Y+VLL ND++TPMEFVI VLQ FF  D E A  +ML VH+QG   C
Sbjct: 14  AEDKVREELKPPSMYKVLLNNDDFTPMEFVIDVLQKFFSYDIERATQLMLTVHYQGKAIC 73

Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           GV+  E+AE KV  V  Y+R +++PL C +E+
Sbjct: 74  GVFTAEVAETKVAHVNKYARDNEHPLLCTLEK 105


>gi|254524583|ref|ZP_05136638.1| ATP-dependent Clp protease adaptor protein ClpS [Stenotrophomonas
           sp. SKA14]
 gi|219722174|gb|EED40699.1| ATP-dependent Clp protease adaptor protein ClpS [Stenotrophomonas
           sp. SKA14]
          Length = 85

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 58/81 (71%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           P  Y+V+L+ND+YTPM+FV+ VLQ FF  D + A  +ML VH +G G CGV+  E+AE K
Sbjct: 4   PPFYQVMLLNDDYTPMDFVVDVLQQFFSMDLDKATQVMLHVHTRGRGVCGVFTREVAETK 63

Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
           V QV  YSR +Q+PL C ME+
Sbjct: 64  VAQVNEYSRMNQHPLLCTMEK 84


>gi|332035126|gb|EGI71639.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 102

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/107 (45%), Positives = 68/107 (63%), Gaps = 5/107 (4%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
           M   G+   D   DSE     K++ P+ Y+V+L ND+YTPM+FVI VL  FF  D + A 
Sbjct: 1   MKDSGV--IDTVRDSE---KQKLQPPRKYKVVLNNDDYTPMDFVIEVLTTFFNMDSDRAT 55

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            +ML+VH +G G CGVY+ ++A  KV QV  YSR +++PL C  EQ+
Sbjct: 56  DVMLQVHEKGKGICGVYSADVAHTKVEQVNRYSRDNEHPLLCSCEQE 102


>gi|119775192|ref|YP_927932.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           amazonensis SB2B]
 gi|166214742|sp|A1S7A6|CLPS_SHEAM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|119767692|gb|ABM00263.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
          Length = 102

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 63/89 (70%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R  +++  P +Y+V+L ND+YTPM+FV+ VLQ FF  +   A  IML++HHQG   CGV+
Sbjct: 13  RADTELMPPSMYKVILNNDDYTPMDFVVEVLQLFFKMNEHQATEIMLQIHHQGKAVCGVF 72

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            + IAE KV QV  ++RQ+Q+PL C +E+
Sbjct: 73  PFGIAETKVAQVNQFARQNQHPLLCSLEK 101


>gi|78047604|ref|YP_363779.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78036034|emb|CAJ23725.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 128

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/86 (54%), Positives = 61/86 (70%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            +V  P  Y+VLL+ND+YTPM+FV+ VL+ FF  + E A  IML VH +G G CGVY+ E
Sbjct: 42  PEVAPPPRYQVLLLNDDYTPMDFVVTVLEQFFNLNLEQATQIMLHVHTRGRGVCGVYSRE 101

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +AE KV QV  +SR +Q+PL C MEQ
Sbjct: 102 VAESKVAQVNEFSRMNQHPLLCTMEQ 127


>gi|15805613|ref|NP_294309.1| ATP-dependent Clp protease adaptor protein ClpS [Deinococcus
           radiodurans R1]
 gi|6458284|gb|AAF10166.1|AE001917_3 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 139

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 63/87 (72%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           ++ + P+L+RVLL+ND+YTPM++V+ VL+ FF K  + A+ IML VHH+G G  GVY  +
Sbjct: 49  TETKKPRLWRVLLLNDDYTPMDYVVQVLEQFFRKTEQEAELIMLAVHHKGQGVAGVYTRD 108

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           +AE KV QV  ++++  +PL+ + E +
Sbjct: 109 VAETKVAQVTAHAQREGHPLRVVAEPE 135


>gi|197284584|ref|YP_002150456.1| ATP-dependent Clp protease adaptor protein [Proteus mirabilis
           HI4320]
 gi|227356766|ref|ZP_03841151.1| ATP-dependent Clp protease adaptor protein [Proteus mirabilis ATCC
           29906]
 gi|194682071|emb|CAR41609.1| ATP-dependent Clp protease adaptor protein [Proteus mirabilis
           HI4320]
 gi|227163056|gb|EEI47991.1| ATP-dependent Clp protease adaptor protein [Proteus mirabilis ATCC
           29906]
          Length = 104

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 64/96 (66%), Gaps = 4/96 (4%)

Query: 46  SEVRFSSKV----RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
           +E     KV      P +Y+V+L ND+YTPM+FV+ VL  +F+ + E A  IML VHH+G
Sbjct: 8   TETTLGEKVSQLNEPPAMYKVILNNDDYTPMDFVVEVLTMYFFLNEEKATQIMLDVHHKG 67

Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            G CGVY+ +IAE KV QV  Y+R++ +PL C +E+
Sbjct: 68  KGVCGVYSADIAETKVAQVNQYARENGHPLLCTLEK 103


>gi|262402498|ref|ZP_06079059.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio sp. RC586]
 gi|262351280|gb|EEZ00413.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio sp. RC586]
          Length = 106

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 60/86 (69%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           + V+ P +Y V+L ND+YT M+FVI +L+ FF  D E A  +MLKVH++G   CG +  E
Sbjct: 20  TAVKPPSMYHVVLNNDDYTSMDFVIEILERFFSMDIERATQVMLKVHYEGKAICGTFTAE 79

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +AE KV QV  YSR++++PL C MEQ
Sbjct: 80  VAETKVAQVTMYSRENEHPLLCTMEQ 105


>gi|319787138|ref|YP_004146613.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465650|gb|ADV27382.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 108

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 61/86 (70%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            ++  P +Y+V+L+ND+YTPM+FV+ VLQ FF  D E A  +ML VH +G G CGV+  E
Sbjct: 22  PEIAPPPMYQVILLNDDYTPMDFVVAVLQQFFGLDLERATQVMLHVHTRGRGVCGVFTRE 81

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +AE KV QV  +SR +Q+PL C ME+
Sbjct: 82  VAESKVAQVNEFSRMNQHPLLCTMEK 107


>gi|307545652|ref|YP_003898131.1| ATP-dependent Clp protease adaptor protein ClpS [Halomonas elongata
           DSM 2581]
 gi|307217676|emb|CBV42946.1| ATP-dependent Clp protease adaptor protein ClpS [Halomonas elongata
           DSM 2581]
          Length = 121

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 3/113 (2%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSS---KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFF 83
           +A  R       E D   D +V   S   ++  P +Y+V+L ND++TPMEFV+ VLQ FF
Sbjct: 5   LAPYRAGMTRPPEPDEEGDGDVAVQSSEPELAHPPMYKVVLHNDDFTPMEFVVEVLQTFF 64

Query: 84  YKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
           + D ETA  IML VH QG   CG++  +IAE K +QV  Y+R+ Q+PL C +E
Sbjct: 65  HMDSETAVQIMLAVHTQGKATCGIFTRDIAETKSHQVNQYARECQHPLLCDIE 117


>gi|94987059|ref|YP_594992.1| hypothetical protein LI0617 [Lawsonia intracellularis PHE/MN1-00]
 gi|229889821|sp|Q1MQQ6|CLPS_LAWIP RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|94731308|emb|CAJ54671.1| uncharacterized conserved protein [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 109

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 59/93 (63%)

Query: 45  DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
             E+    K+R PK+Y+VLL NDNYT MEFV+ +L   F K  E A  IML VH +GIG 
Sbjct: 14  SPELLLQEKIRRPKMYQVLLHNDNYTTMEFVVSILMKIFRKTMEQATSIMLSVHRKGIGV 73

Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            GVY  E+AE KVN     +R+  +PL+C +++
Sbjct: 74  AGVYTRELAETKVNTTHMLAREAGFPLRCTLQE 106


>gi|320335153|ref|YP_004171864.1| ATP-dependent Clp protease adapter protein clpS [Deinococcus
           maricopensis DSM 21211]
 gi|319756442|gb|ADV68199.1| ATP-dependent Clp protease adapter protein clpS [Deinococcus
           maricopensis DSM 21211]
          Length = 114

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/98 (43%), Positives = 63/98 (64%)

Query: 41  DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
           D+   +++    ++  P+ Y VLL+ND+YTPM+FV++VL++ F +D   A  IML VHHQ
Sbjct: 9   DSGAGTQLAQRPRLARPRRYTVLLLNDDYTPMDFVVYVLEHHFGRDEPDATRIMLAVHHQ 68

Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           G G  GVY  E+AE KV QV   +R   YPL+ + E +
Sbjct: 69  GRGVAGVYTREVAETKVAQVTRLARAQGYPLELLAEPE 106


>gi|85713420|ref|ZP_01044415.1| ATP-dependent Clp protease adaptor protein ClpS [Idiomarina baltica
           OS145]
 gi|85692756|gb|EAQ30759.1| ATP-dependent Clp protease adaptor protein ClpS [Idiomarina baltica
           OS145]
          Length = 104

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 71/104 (68%), Gaps = 2/104 (1%)

Query: 37  IAEFDN--CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
           +++FD+    D E     +++ P +Y+V+L ND+YTPM+FVI VL  FF  ++E A   M
Sbjct: 1   MSQFDHQHVYDVEEESKHELKPPSMYKVILNNDDYTPMDFVIEVLIRFFRMNNERATDTM 60

Query: 95  LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           L+VH++G   CGVY+ EIAE KV QV  Y+R++Q+PL C ME +
Sbjct: 61  LQVHYKGKAVCGVYSAEIAETKVVQVNQYARENQHPLLCTMEHE 104


>gi|77919855|ref|YP_357670.1| ATP-dependent Clp protease adaptor protein ClpS [Pelobacter
           carbinolicus DSM 2380]
 gi|77545938|gb|ABA89500.1| ATP-dependent Clp protease adaptor protein ClpS [Pelobacter
           carbinolicus DSM 2380]
          Length = 104

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 62/91 (68%)

Query: 47  EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
           E R +++   P L+RVL+ ND+YT MEFV+ VLQ  F+K    A  IML +H++G G+CG
Sbjct: 13  EERKATRTAPPPLFRVLMHNDDYTTMEFVVEVLQGVFHKSAAEAHRIMLNIHNEGTGQCG 72

Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            + +EIAE KV +V   +RQ  +PL+C +E+
Sbjct: 73  TFPHEIAETKVARVHQVARQAGFPLRCSLEE 103


>gi|317491428|ref|ZP_07949864.1| ATP-dependent Clp protease adaptor protein ClpS [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316920975|gb|EFV42298.1| ATP-dependent Clp protease adaptor protein ClpS [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 107

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 68/105 (64%), Gaps = 2/105 (1%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
           N+     F+   DS  +   +V+ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A  
Sbjct: 3   NQNDWLNFEQLADS--KQIDEVKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQ 60

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +ML VH++G   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 61  LMLTVHYKGKAICGVFTAEVAETKVAHVNRYARENEHPLLCTLEK 105


>gi|78357143|ref|YP_388592.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|123552230|sp|Q30ZJ9|CLPS_DESDG RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|78219548|gb|ABB38897.1| ATP-dependent clp protease adaptor protein ClpS [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 104

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 61/93 (65%)

Query: 45  DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
           D++V    +++ P+ +RVLL ND+YT M+FV+ VL + F K  E A  IML VH +GIG 
Sbjct: 11  DADVLLEEELKEPRRFRVLLHNDDYTSMDFVVAVLIDIFRKSREQAMSIMLSVHEKGIGV 70

Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           CGVY  E+AE KV  V   +R   +PL+C ME+
Sbjct: 71  CGVYTAEVAETKVAMVHARARAEGFPLRCSMEE 103


>gi|294636953|ref|ZP_06715277.1| ATP-dependent Clp protease adaptor protein ClpS [Edwardsiella tarda
           ATCC 23685]
 gi|291089846|gb|EFE22407.1| ATP-dependent Clp protease adaptor protein ClpS [Edwardsiella tarda
           ATCC 23685]
          Length = 106

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 61/92 (66%)

Query: 46  SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
           ++ R    V+ P LY V+L ND+YTPMEFVI VLQ FF  D E A  +ML VH++G   C
Sbjct: 14  ADERTREAVKPPSLYSVILNNDDYTPMEFVIEVLQKFFTYDIERATQLMLTVHYKGKAVC 73

Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           GV+  E+AE KV  +  Y+R++ +PL C +E+
Sbjct: 74  GVFTAEVAETKVALINRYARENDHPLLCTLEK 105


>gi|269139553|ref|YP_003296254.1| ATP-dependent Clp protease adaptor protein [Edwardsiella tarda
           EIB202]
 gi|267985214|gb|ACY85043.1| ATP-dependent Clp protease adaptor protein [Edwardsiella tarda
           EIB202]
 gi|304559441|gb|ADM42105.1| ATP-dependent Clp protease adaptor protein ClpS [Edwardsiella tarda
           FL6-60]
          Length = 106

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 60/91 (65%)

Query: 47  EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
           E R    V+ P LY V+L ND+YTPMEFVI VLQ FF  D E A  +ML VH++G   CG
Sbjct: 15  EDRTRRAVKPPSLYSVILNNDDYTPMEFVIEVLQKFFAYDIERATQLMLTVHYKGKAVCG 74

Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           V+  E+AE KV  +  Y+R +++PL C +E+
Sbjct: 75  VFTAEVAETKVALINRYARDNEHPLLCTLEK 105


>gi|253990327|ref|YP_003041683.1| ATP-dependent Clp protease adaptor protein ClpS [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253781777|emb|CAQ84940.1| atp-dependent clp protease adaptor protein clps [Photorhabdus
           asymbiotica]
          Length = 106

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 60/85 (70%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           K++ P +Y+V+L ND+YTPMEFV+ VL+ FF  D E A  +ML VH+QG   CGVY  E+
Sbjct: 21  KLQPPSMYQVILNNDDYTPMEFVVDVLRKFFSYDVERATQLMLDVHYQGKAVCGVYTAEV 80

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           AE K  QV  Y+R+ Q+PL C +E+
Sbjct: 81  AETKAAQVNMYAREQQHPLLCTLEK 105


>gi|312881479|ref|ZP_07741271.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309370845|gb|EFP98305.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 106

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 61/86 (70%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           +KV  P +Y V+L ND+YTPMEFVI +L+ FF  D + A  +MLKVH++G   CG +  E
Sbjct: 20  TKVTPPSMYNVILNNDDYTPMEFVIEILERFFSMDIDKATQVMLKVHYEGKAICGTFTAE 79

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +AE KV QV  +S+++++PL C ME+
Sbjct: 80  VAETKVAQVTLHSKENEHPLLCTMER 105


>gi|157369916|ref|YP_001477905.1| ATP-dependent Clp protease adaptor protein ClpS [Serratia
           proteamaculans 568]
 gi|270261165|ref|ZP_06189438.1| ATP-dependent Clp protease adapter protein ClpS [Serratia odorifera
           4Rx13]
 gi|293396848|ref|ZP_06641122.1| ATP-dependent Clp protease adaptor protein ClpS [Serratia odorifera
           DSM 4582]
 gi|167008656|sp|A8GCD7|CLPS_SERP5 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|157321680|gb|ABV40777.1| ATP-dependent Clp protease adaptor protein ClpS [Serratia
           proteamaculans 568]
 gi|270044649|gb|EFA17740.1| ATP-dependent Clp protease adapter protein ClpS [Serratia odorifera
           4Rx13]
 gi|291420319|gb|EFE93574.1| ATP-dependent Clp protease adaptor protein ClpS [Serratia odorifera
           DSM 4582]
          Length = 106

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/84 (52%), Positives = 60/84 (71%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           V+ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A  +ML VH+QG   CGV+  E+A
Sbjct: 22  VKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQLMLTVHYQGKAICGVFTAEVA 81

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E KV  V  Y+R++++PL C +E+
Sbjct: 82  ETKVVHVNRYARENEHPLLCTLEK 105


>gi|322832165|ref|YP_004212192.1| ATP-dependent Clp protease adaptor protein ClpS [Rahnella sp.
           Y9602]
 gi|321167366|gb|ADW73065.1| ATP-dependent Clp protease adaptor protein ClpS [Rahnella sp.
           Y9602]
          Length = 106

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 62/86 (72%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            +V+ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A  +ML+VH++G   CGVY  E
Sbjct: 20  DEVKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQLMLQVHYRGKAICGVYTAE 79

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +AE KV  V  Y++++++PL C +E+
Sbjct: 80  VAETKVAHVNEYAKENEHPLLCTLEK 105


>gi|12230837|sp|Q9RWS9|CLPS_DEIRA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
          Length = 113

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 62/85 (72%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           ++ + P+L+RVLL+ND+YTPM++V+ VL+ FF K  + A+ IML VHH+G G  GVY  +
Sbjct: 23  TETKKPRLWRVLLLNDDYTPMDYVVQVLEQFFRKTEQEAELIMLAVHHKGQGVAGVYTRD 82

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIME 136
           +AE KV QV  ++++  +PL+ + E
Sbjct: 83  VAETKVAQVTAHAQREGHPLRVVAE 107


>gi|315126397|ref|YP_004068400.1| modulator of ClpA substrate specificity [Pseudoalteromonas sp.
           SM9913]
 gi|315014911|gb|ADT68249.1| modulator of ClpA substrate specificity [Pseudoalteromonas sp.
           SM9913]
          Length = 102

 Score = 94.7 bits (234), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 67/107 (62%), Gaps = 5/107 (4%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
           M   G+   D   DSE     K++ P+ Y+V+L ND+YTPM+FVI +L  FF  D + A 
Sbjct: 1   MKDSGV--IDTVRDSE---KQKLQPPRKYKVVLNNDDYTPMDFVIEILMTFFNMDSDRAT 55

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            +ML++H QG G CGVY+ ++A  K  QV  YSR +++PL C  EQ+
Sbjct: 56  DVMLQIHQQGKGICGVYSADVAHTKAEQVNRYSRDNEHPLLCSCEQE 102


>gi|320539589|ref|ZP_08039254.1| putative regulatory protein for ClpA substrate specificity
           [Serratia symbiotica str. Tucson]
 gi|320030348|gb|EFW12362.1| putative regulatory protein for ClpA substrate specificity
           [Serratia symbiotica str. Tucson]
          Length = 106

 Score = 94.7 bits (234), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 64/92 (69%)

Query: 46  SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
           +E +    ++ P +Y+V+L  D+YTPMEFVI VLQ FF+ D E A  +ML+VH+QG   C
Sbjct: 14  TEEKQIDALKPPSMYKVILNKDDYTPMEFVIDVLQKFFFYDIERATQLMLRVHYQGKAIC 73

Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           GV+  E+AE KV  V  Y+R+++YPL C +E+
Sbjct: 74  GVFTAEVAETKVIHVNCYARENEYPLLCTLEK 105


>gi|262376116|ref|ZP_06069346.1| substrate modulator for ClpAP [Acinetobacter lwoffii SH145]
 gi|262308717|gb|EEY89850.1| substrate modulator for ClpAP [Acinetobacter lwoffii SH145]
          Length = 137

 Score = 94.7 bits (234), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/88 (48%), Positives = 60/88 (68%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
             +++ P LY V+L+ND+YTPMEFVI +LQ +F  + + A  +ML VH++G G  GVY  
Sbjct: 49  PPELKRPPLYAVVLLNDDYTPMEFVIEILQQYFAMNLDQATQVMLTVHYEGKGVAGVYPR 108

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           +IAE K NQV NY+R   +PL C +E K
Sbjct: 109 DIAETKANQVNNYARSQGHPLLCQIEPK 136


>gi|259908937|ref|YP_002649293.1| ATP-dependent Clp protease adaptor protein ClpS [Erwinia pyrifoliae
           Ep1/96]
 gi|224964559|emb|CAX56072.1| ATP-dependent Clp protease adaptor protein [Erwinia pyrifoliae
           Ep1/96]
 gi|283478941|emb|CAY74857.1| ATP-dependent Clp protease adaptor protein ClpS [Erwinia pyrifoliae
           DSM 12163]
          Length = 106

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 65/98 (66%), Gaps = 2/98 (2%)

Query: 40  FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
           F+   + +VR    ++ P +Y+V+L ND++TPMEFVI VLQ FF  D E A  +ML VH+
Sbjct: 10  FEQLANDKVR--EALKPPSMYKVILNNDDFTPMEFVIDVLQKFFSYDIERATQLMLTVHY 67

Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           QG   CGV+  E+AE KV  V  Y+R +++PL C +E+
Sbjct: 68  QGKAVCGVFTAEVAETKVAHVNKYARDNEHPLLCTLEK 105


>gi|238792421|ref|ZP_04636055.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
           intermedia ATCC 29909]
 gi|238728347|gb|EEQ19867.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
           intermedia ATCC 29909]
          Length = 106

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 60/84 (71%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A  +ML VH+QG   CGV+  E+A
Sbjct: 22  LKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQLMLNVHYQGKAICGVFTAEVA 81

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E KV  V  Y+R++++PL C +E+
Sbjct: 82  ETKVAHVNQYARENEHPLLCTLEK 105


>gi|238784507|ref|ZP_04628515.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
           bercovieri ATCC 43970]
 gi|238795830|ref|ZP_04639343.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
           mollaretii ATCC 43969]
 gi|238714570|gb|EEQ06574.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
           bercovieri ATCC 43970]
 gi|238720293|gb|EEQ12096.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
           mollaretii ATCC 43969]
          Length = 106

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 60/84 (71%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A  +ML VH+QG   CGV+  E+A
Sbjct: 22  LKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQLMLNVHYQGKAICGVFTAEVA 81

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E KV  V  Y+R++++PL C +E+
Sbjct: 82  ETKVAHVNQYARENEHPLLCTLEK 105


>gi|332162228|ref|YP_004298805.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318606291|emb|CBY27789.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325666458|gb|ADZ43102.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330860566|emb|CBX70865.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
           enterocolitica W22703]
          Length = 115

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 60/84 (71%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A  +ML VH+QG   CGV+  E+A
Sbjct: 31  LKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQLMLNVHYQGKAICGVFTAEVA 90

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E KV  V  Y+R++++PL C +E+
Sbjct: 91  ETKVAHVNQYARENEHPLLCTLEK 114


>gi|123441829|ref|YP_001005813.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|238762120|ref|ZP_04623093.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
           kristensenii ATCC 33638]
 gi|238789631|ref|ZP_04633414.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
           frederiksenii ATCC 33641]
 gi|158512680|sp|A1JMC5|CLPS_YERE8 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|122088790|emb|CAL11596.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|238699848|gb|EEP92592.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
           kristensenii ATCC 33638]
 gi|238722184|gb|EEQ13841.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
           frederiksenii ATCC 33641]
          Length = 106

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 60/84 (71%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A  +ML VH+QG   CGV+  E+A
Sbjct: 22  LKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQLMLNVHYQGKAICGVFTAEVA 81

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E KV  V  Y+R++++PL C +E+
Sbjct: 82  ETKVAHVNQYARENEHPLLCTLEK 105


>gi|300722512|ref|YP_003711802.1| modulator of ClpA substrate specificity [Xenorhabdus nematophila
           ATCC 19061]
 gi|297629019|emb|CBJ89604.1| modulator of ClpA substrate specificity [Xenorhabdus nematophila
           ATCC 19061]
          Length = 106

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 60/84 (71%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           +R P +Y+V+L ND+YTPMEFV+ VLQ FF  + E A  +ML VH++G   CG+Y  E+A
Sbjct: 22  LRPPSMYQVVLNNDDYTPMEFVVDVLQKFFSYNVERATQLMLDVHYKGKAVCGIYTAEVA 81

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E K  QV  Y+R+H++PL C +E+
Sbjct: 82  ETKAAQVNMYAREHEHPLLCTLEK 105


>gi|238920382|ref|YP_002933897.1| hypothetical protein NT01EI_2492 [Edwardsiella ictaluri 93-146]
 gi|259491247|sp|C5BEA1|CLPS_EDWI9 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238869951|gb|ACR69662.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 106

 Score = 94.4 bits (233), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 61/92 (66%)

Query: 46  SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
           +E +    V+ P LY V+L ND+YTPMEFVI VLQ FF  D E A  +ML VH++G   C
Sbjct: 14  AEDQTRRAVKPPSLYSVILNNDDYTPMEFVIEVLQTFFAYDIERATQLMLTVHYKGKAVC 73

Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           GV+  E+AE KV  +  Y+R +++PL C +E+
Sbjct: 74  GVFTAEVAETKVALINRYARDNEHPLLCTLEK 105


>gi|291334349|gb|ADD94008.1| hypothetical protein ED21_23138 [uncultured marine bacterium
           MedDCM-OCT-S11-C310]
          Length = 112

 Score = 94.4 bits (233), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/84 (52%), Positives = 60/84 (71%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           KV+ PK Y+VLL NDNYT MEFV+ VL+  F+ +  +A  +ML VH +G G  GV++YE+
Sbjct: 26  KVKRPKRYKVLLHNDNYTTMEFVVLVLKTVFHLEEPSAVQVMLHVHRKGAGVAGVFSYEV 85

Query: 113 AEMKVNQVMNYSRQHQYPLQCIME 136
           AE KV++V   +R H YPL+C ME
Sbjct: 86  AETKVHKVTELARAHDYPLRCSME 109


>gi|290473958|ref|YP_003466832.1| modulator of ClpA substrate specificity [Xenorhabdus bovienii
           SS-2004]
 gi|289173265|emb|CBJ80040.1| modulator of ClpA substrate specificity [Xenorhabdus bovienii
           SS-2004]
          Length = 106

 Score = 94.4 bits (233), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 4/105 (3%)

Query: 37  IAEFDNCLDSEVRFSSK----VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
           ++EF N L  E     K    ++ P +Y+V+L ND+YTPMEFV+ VL+ FF  D E A  
Sbjct: 1   MSEFYNSLKIEELIEDKTEQTLQPPSMYKVILNNDDYTPMEFVVDVLRKFFSYDVERATQ 60

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +ML +H+QG   CG+Y  E+AE K  QV  Y+++H++PL C +E+
Sbjct: 61  LMLDIHYQGKAICGIYTAEVAETKAAQVNMYAKEHEHPLLCSLEK 105


>gi|238749793|ref|ZP_04611298.1| ATP-dependent Clp protease adapter protein clpS [Yersinia rohdei
           ATCC 43380]
 gi|238712448|gb|EEQ04661.1| ATP-dependent Clp protease adapter protein clpS [Yersinia rohdei
           ATCC 43380]
          Length = 106

 Score = 94.4 bits (233), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 60/84 (71%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A  +ML VH+QG   CGV+  E+A
Sbjct: 22  LKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQLMLNVHYQGKAICGVFTAEVA 81

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E KV  V  Y+R++++PL C +E+
Sbjct: 82  ETKVAHVNQYARENEHPLLCTLEK 105


>gi|85858021|ref|YP_460223.1| ATP-dependent Clp protease adaptor protein [Syntrophus
           aciditrophicus SB]
 gi|123515753|sp|Q2LQK8|CLPS_SYNAS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|85721112|gb|ABC76055.1| ATP-dependent Clp protease adaptor protein [Syntrophus
           aciditrophicus SB]
          Length = 107

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 66/101 (65%), Gaps = 2/101 (1%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           I  FD  L+ E  +  KV  P++YRV+L ND+YT M+FV+ +L   F+K    A  IML 
Sbjct: 8   IKNFDQELNIE--WEDKVMEPRMYRVILHNDHYTTMDFVVQILMTIFHKPAAQATRIMLD 65

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           VH +G G CGVY Y+IA  K+ QV   +RQ++YPL+C M++
Sbjct: 66  VHRKGQGVCGVYTYDIASTKIAQVHFMARQNEYPLRCSMDE 106


>gi|258405491|ref|YP_003198233.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfohalobium
           retbaense DSM 5692]
 gi|257797718|gb|ACV68655.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfohalobium
           retbaense DSM 5692]
          Length = 103

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 56/86 (65%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           + V+ P  Y+VLL ND+YT MEFV+ VL + F K    A  IML VH  G+G CG+Y  E
Sbjct: 17  TAVKEPSRYKVLLHNDDYTTMEFVVQVLMDIFNKSEAEATQIMLNVHKNGVGVCGIYTAE 76

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +AE KV  V   +R+H YPL+C ME+
Sbjct: 77  VAETKVAMVSQMARKHGYPLKCTMEE 102


>gi|71278979|ref|YP_269595.1| ATP-dependent Clp protease adaptor protein ClpS [Colwellia
           psychrerythraea 34H]
 gi|123632117|sp|Q480C4|CLPS_COLP3 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|71144719|gb|AAZ25192.1| ATP-dependent Clp protease adaptor protein ClpS [Colwellia
           psychrerythraea 34H]
          Length = 106

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 59/89 (66%)

Query: 47  EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
           E     ++  P  Y V L+ND+YTPM+FV+ VL NFF K  E A  IML +H++G   CG
Sbjct: 15  EESVKEQIEEPAKYYVFLLNDDYTPMDFVVDVLCNFFNKSEEQATDIMLTIHYKGKALCG 74

Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIM 135
            Y  EIAE KV QV+ Y+ ++Q+PL+C+M
Sbjct: 75  TYTAEIAETKVEQVVQYAFENQHPLKCVM 103


>gi|226954273|ref|ZP_03824737.1| protease [Acinetobacter sp. ATCC 27244]
 gi|294650477|ref|ZP_06727836.1| protease [Acinetobacter haemolyticus ATCC 19194]
 gi|226835001|gb|EEH67384.1| protease [Acinetobacter sp. ATCC 27244]
 gi|292823620|gb|EFF82464.1| protease [Acinetobacter haemolyticus ATCC 19194]
          Length = 130

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 61/88 (69%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
             +++ P LY V+L+ND+YTPM+FVI VLQ++F  D + A  +ML VH++G G  G+Y  
Sbjct: 41  PPELKRPPLYAVVLMNDDYTPMDFVIEVLQSYFGMDFDQASQVMLTVHYEGKGTAGIYPR 100

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           +IAE K NQV NY+R   +PL C +E +
Sbjct: 101 DIAETKANQVNNYARSQGHPLLCQIEPE 128


>gi|284007607|emb|CBA73211.1| ATP-dependent Clp protease adaptor protein [Arsenophonus nasoniae]
          Length = 89

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 59/84 (70%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+L ND++TPM+FV+ VL+ +F  D E A  IML VH  G G CGVY  E+A
Sbjct: 5   LQPPSMYKVILNNDDFTPMDFVVQVLKKYFSFDEEQATQIMLDVHFHGKGICGVYTAEVA 64

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E K  QV  Y+R+H+YPL C +E+
Sbjct: 65  ETKAAQVNIYAREHEYPLLCTIEE 88


>gi|22126687|ref|NP_670110.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
           KIM 10]
 gi|45441053|ref|NP_992592.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51595733|ref|YP_069924.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia
           pseudotuberculosis IP 32953]
 gi|108806654|ref|YP_650570.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
           Antiqua]
 gi|108812774|ref|YP_648541.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
           Nepal516]
 gi|145599600|ref|YP_001163676.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
           Pestoides F]
 gi|149366624|ref|ZP_01888658.1| hypothetical protein YPE_1859 [Yersinia pestis CA88-4125]
 gi|153948682|ref|YP_001401572.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia
           pseudotuberculosis IP 31758]
 gi|162418231|ref|YP_001606105.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
           Angola]
 gi|165924312|ref|ZP_02220144.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165938973|ref|ZP_02227526.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166009809|ref|ZP_02230707.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166211395|ref|ZP_02237430.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167399829|ref|ZP_02305347.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167419808|ref|ZP_02311561.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167424070|ref|ZP_02315823.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167469762|ref|ZP_02334466.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
           FV-1]
 gi|170024918|ref|YP_001721423.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia
           pseudotuberculosis YPIII]
 gi|186894810|ref|YP_001871922.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia
           pseudotuberculosis PB1/+]
 gi|218928515|ref|YP_002346390.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
           CO92]
 gi|229841334|ref|ZP_04461493.1| regulatory protein for ClpA substrate specificity [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229843438|ref|ZP_04463584.1| regulatory protein for ClpA substrate specificity [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229895811|ref|ZP_04510981.1| regulatory protein for ClpA substrate specificity [Yersinia pestis
           Pestoides A]
 gi|229903187|ref|ZP_04518300.1| regulatory protein for ClpA substrate specificity [Yersinia pestis
           Nepal516]
 gi|270486980|ref|ZP_06204054.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
           KIM D27]
 gi|294503358|ref|YP_003567420.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
           Z176003]
 gi|21542306|sp|Q8ZGD5|CLPS_YERPE RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|67460254|sp|Q66CL0|CLPS_YERPS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|122383658|sp|Q1CA97|CLPS_YERPA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|122384459|sp|Q1CGD9|CLPS_YERPN RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|158514101|sp|A4TN41|CLPS_YERPP RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|167008657|sp|A7FJZ4|CLPS_YERP3 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238687306|sp|A9R4Y5|CLPS_YERPG RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238688568|sp|B1JRG2|CLPS_YERPY RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238691444|sp|B2KA00|CLPS_YERPB RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|21959704|gb|AAM86361.1|AE013884_8 hypothetical protein y2810 [Yersinia pestis KIM 10]
 gi|45435912|gb|AAS61469.1| conserved hypothetical protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51589015|emb|CAH20633.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108776422|gb|ABG18941.1| hypothetical protein YPN_2613 [Yersinia pestis Nepal516]
 gi|108778567|gb|ABG12625.1| hypothetical protein YPA_0657 [Yersinia pestis Antiqua]
 gi|115347126|emb|CAL20019.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|145211296|gb|ABP40703.1| hypothetical protein YPDSF_2328 [Yersinia pestis Pestoides F]
 gi|149290998|gb|EDM41073.1| hypothetical protein YPE_1859 [Yersinia pestis CA88-4125]
 gi|152960177|gb|ABS47638.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia
           pseudotuberculosis IP 31758]
 gi|162351046|gb|ABX84994.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
           Angola]
 gi|165913120|gb|EDR31744.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165923372|gb|EDR40504.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165991205|gb|EDR43506.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166207166|gb|EDR51646.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166962549|gb|EDR58570.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167050537|gb|EDR61945.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167056919|gb|EDR66682.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169751452|gb|ACA68970.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia
           pseudotuberculosis YPIII]
 gi|186697836|gb|ACC88465.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia
           pseudotuberculosis PB1/+]
 gi|229678957|gb|EEO75060.1| regulatory protein for ClpA substrate specificity [Yersinia pestis
           Nepal516]
 gi|229689785|gb|EEO81846.1| regulatory protein for ClpA substrate specificity [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229697700|gb|EEO87747.1| regulatory protein for ClpA substrate specificity [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229700734|gb|EEO88763.1| regulatory protein for ClpA substrate specificity [Yersinia pestis
           Pestoides A]
 gi|262361398|gb|ACY58119.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
           D106004]
 gi|262365065|gb|ACY61622.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
           D182038]
 gi|270335484|gb|EFA46261.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
           KIM D27]
 gi|294353817|gb|ADE64158.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
           Z176003]
 gi|320015777|gb|ADV99348.1| regulatory protein for ClpA substrate specificity [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 106

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 60/84 (71%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A  +ML VH+QG   CGV+  E+A
Sbjct: 22  LQPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQLMLNVHYQGKAICGVFTAEVA 81

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E KV  V  Y+R++++PL C +E+
Sbjct: 82  ETKVAHVNQYARENEHPLLCTLEK 105


>gi|254480629|ref|ZP_05093876.1| ATP-dependent Clp protease adaptor protein ClpS [marine gamma
           proteobacterium HTCC2148]
 gi|214039212|gb|EEB79872.1| ATP-dependent Clp protease adaptor protein ClpS [marine gamma
           proteobacterium HTCC2148]
          Length = 107

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 61/84 (72%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           +++ P L++V+L+ND+YTPMEFV+ VL++FF  + E A  +ML VH QG G CG++  +I
Sbjct: 20  ELKKPPLFKVVLMNDDYTPMEFVVEVLESFFRMNREQATHVMLTVHTQGKGVCGIFTRDI 79

Query: 113 AEMKVNQVMNYSRQHQYPLQCIME 136
           AE K  QV  Y+R+ ++PL C +E
Sbjct: 80  AETKAAQVNQYARESEHPLLCEVE 103


>gi|294084618|ref|YP_003551376.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292664191|gb|ADE39292.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 75

 Score = 93.6 bits (231), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 59/75 (78%)

Query: 64  LVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNY 123
           ++ND+YTPMEFV+HVLQ+FF +  + A  IML VH +G+G CG+Y++EIAE K ++ M Y
Sbjct: 1   MMNDDYTPMEFVVHVLQHFFGRTADEATQIMLNVHQRGVGICGIYSFEIAETKASKTMEY 60

Query: 124 SRQHQYPLQCIMEQK 138
           +RQ ++PLQ  +E++
Sbjct: 61  ARQKEHPLQLQLEKE 75


>gi|90021331|ref|YP_527158.1| ATP-dependent Clp protease adaptor protein ClpS [Saccharophagus
           degradans 2-40]
 gi|89950931|gb|ABD80946.1| ATP-dependent Clp protease adaptor protein ClpS [Saccharophagus
           degradans 2-40]
          Length = 124

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 63/84 (75%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           +++ P +Y+V+++ND+YTPMEFV+ VL+ FF  + E+A  IML+VH +G   CGV++ ++
Sbjct: 33  RLKRPPMYKVVMLNDDYTPMEFVVEVLELFFSMNRESATRIMLRVHTEGKAVCGVFSRDV 92

Query: 113 AEMKVNQVMNYSRQHQYPLQCIME 136
           AE K  QV  Y++Q+++PL C +E
Sbjct: 93  AETKAAQVNQYAKQNEHPLLCEIE 116


>gi|78776659|ref|YP_392974.1| ATP-dependent Clp protease adaptor protein ClpS [Sulfurimonas
           denitrificans DSM 1251]
 gi|78497199|gb|ABB43739.1| ATP-dependent Clp protease adaptor protein ClpS [Sulfurimonas
           denitrificans DSM 1251]
          Length = 99

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 65/95 (68%)

Query: 44  LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIG 103
           +D E +   K++ PK Y+VLL+ND+YT MEFVI +L   F+K++E A  IML++H +  G
Sbjct: 5   IDLETKEKVKIKYPKKYKVLLLNDDYTSMEFVIDILITIFHKNYEQAHQIMLEIHKKTKG 64

Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            CG+Y YEIAE KV QV   +R + + L+  ME++
Sbjct: 65  ICGIYTYEIAETKVMQVHKKARDNGFALRATMEEE 99


>gi|297570438|ref|YP_003691782.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296926353|gb|ADH87163.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 105

 Score = 93.6 bits (231), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 42/95 (44%), Positives = 64/95 (67%)

Query: 44  LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIG 103
           LD+  R   ++R P  Y+VLL ND+YT M+FV+ VL+  F  D ++A  IM+ VH +G+G
Sbjct: 11  LDAVTREEQELRQPPRYKVLLHNDDYTTMDFVVTVLETVFKHDTDSAHRIMMSVHKEGVG 70

Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
             GVY  ++AE K   V N +R+H+YPL+C +E++
Sbjct: 71  VAGVYPRDVAETKSAMVHNLARKHEYPLKCSLERE 105


>gi|304413815|ref|ZP_07395232.1| regulatory protein for ClpA substrate specificity [Candidatus
           Regiella insecticola LSR1]
 gi|304283535|gb|EFL91930.1| regulatory protein for ClpA substrate specificity [Candidatus
           Regiella insecticola LSR1]
          Length = 106

 Score = 93.6 bits (231), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 61/86 (70%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            K++ P LY+V+L ND+YTPMEFVI VLQ FF  D E A  IML +H+QG   CGV+  E
Sbjct: 20  DKLQPPSLYKVILNNDDYTPMEFVIDVLQKFFSYDIELATQIMLDIHYQGRAICGVFTAE 79

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +AE KV  V  Y+R++++PL C +++
Sbjct: 80  VAETKVVLVNQYARKNEHPLLCTLKK 105


>gi|330719866|gb|EGG98352.1| ATP-dependent Clp protease adaptor protein ClpS [gamma
           proteobacterium IMCC2047]
          Length = 131

 Score = 93.2 bits (230), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 60/86 (69%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            K++ P +Y+V++ ND+YTPM+FV+ +L++FF  + E A  IML VH QG   CGV+  +
Sbjct: 44  PKLKPPPMYKVVMYNDDYTPMDFVVEILESFFNLNREKATQIMLTVHTQGKAVCGVFTRD 103

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           IAE KV QV  YS  +++PL C M+Q
Sbjct: 104 IAETKVTQVNQYSSDNEHPLLCGMDQ 129


>gi|67460271|sp|Q6FCI2|CLPS_ACIAD RecName: Full=ATP-dependent Clp protease adapter protein ClpS
          Length = 107

 Score = 93.2 bits (230), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 60/88 (68%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
             +++ P LY V+L+ND+YTPM+FVI +LQ +F  + + A  +ML VH++G G  GVY  
Sbjct: 19  PPELKRPPLYAVVLLNDDYTPMDFVIEILQQYFALNLDQATQVMLTVHYEGKGVAGVYPR 78

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           +IAE K NQV NY+R   +PL C +E K
Sbjct: 79  DIAETKANQVNNYARSQGHPLLCQIEPK 106


>gi|115376673|ref|ZP_01463901.1| ATP-dependent Clp protease adaptor protein ClpS [Stigmatella
           aurantiaca DW4/3-1]
 gi|310823925|ref|YP_003956283.1| ATP-dependent CLP protease, adapter protein CLPs [Stigmatella
           aurantiaca DW4/3-1]
 gi|115366290|gb|EAU65297.1| ATP-dependent Clp protease adaptor protein ClpS [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396997|gb|ADO74456.1| ATP-dependent Clp protease, adapter protein ClpS [Stigmatella
           aurantiaca DW4/3-1]
          Length = 107

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/98 (47%), Positives = 61/98 (62%)

Query: 39  EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           E D  + +E R   K++ P LY+VLL NDNYT  EFV+ VL+  F+K    A  IML VH
Sbjct: 6   ENDENVVTETRPEKKLKKPTLYKVLLHNDNYTTREFVVAVLKEIFHKSEGDAVQIMLHVH 65

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
           + GIG  GVY YE+AE K+  V   +R + YPL+  ME
Sbjct: 66  YNGIGVAGVYTYEVAETKIKTVEAAARDNGYPLRLSME 103


>gi|238753481|ref|ZP_04614844.1| ATP-dependent Clp protease adapter protein clpS [Yersinia ruckeri
           ATCC 29473]
 gi|238708434|gb|EEQ00789.1| ATP-dependent Clp protease adapter protein clpS [Yersinia ruckeri
           ATCC 29473]
          Length = 106

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 60/84 (71%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A  +ML VH++G   CGV+  E+A
Sbjct: 22  LKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQLMLNVHYKGKAICGVFTAEVA 81

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E KV  V  Y+R++++PL C +E+
Sbjct: 82  ETKVAHVNQYARENEHPLLCTLEK 105


>gi|212703188|ref|ZP_03311316.1| hypothetical protein DESPIG_01230 [Desulfovibrio piger ATCC 29098]
 gi|212673454|gb|EEB33937.1| hypothetical protein DESPIG_01230 [Desulfovibrio piger ATCC 29098]
          Length = 106

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/111 (45%), Positives = 66/111 (59%), Gaps = 7/111 (6%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           MAD   N+ G        D+      K++ P  Y VLL ND+YT M+FV+ VL + F+K 
Sbjct: 1   MADETWNEPGT-------DTATIVKKKIKEPDRYVVLLHNDDYTSMDFVVGVLCDIFHKT 53

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            E A  IML VH QGIG+CGVY +EIAE KV  V   +R   +PL+C ME+
Sbjct: 54  PEEATAIMLAVHQQGIGQCGVYTHEIAETKVALVRRRARAAGFPLRCTMEK 104


>gi|329894886|ref|ZP_08270685.1| ATP-dependent Clp protease adaptor protein ClpS [gamma
           proteobacterium IMCC3088]
 gi|328922615|gb|EGG29950.1| ATP-dependent Clp protease adaptor protein ClpS [gamma
           proteobacterium IMCC3088]
          Length = 113

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 60/83 (72%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P LY+V+L+ND+YTPMEFV+ VL+ FF  + E A  IML VH QG G CG+Y  ++A
Sbjct: 24  LKKPPLYKVVLMNDDYTPMEFVVLVLERFFRMNREKATQIMLAVHTQGKGVCGIYPRDVA 83

Query: 114 EMKVNQVMNYSRQHQYPLQCIME 136
           E K  +V  +SR++Q+PL C +E
Sbjct: 84  ETKAYEVNEFSRENQHPLLCEVE 106


>gi|255320456|ref|ZP_05361637.1| substrate modulator for ClpAP, directs protease activity towards
           aggregated protein [Acinetobacter radioresistens SK82]
 gi|262378352|ref|ZP_06071509.1| substrate modulator for ClpAP [Acinetobacter radioresistens SH164]
 gi|255302428|gb|EET81664.1| substrate modulator for ClpAP, directs protease activity towards
           aggregated protein [Acinetobacter radioresistens SK82]
 gi|262299637|gb|EEY87549.1| substrate modulator for ClpAP [Acinetobacter radioresistens SH164]
          Length = 137

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 70/115 (60%), Gaps = 3/115 (2%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRF---SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFF 83
           + D  +N +     ++  D E+       +++ P LY V+L+ND+YTPM+FVI +LQ +F
Sbjct: 22  LVDWHLNPRLSDSQNDEADGEIAVKPAPPQLKKPPLYAVVLLNDDYTPMDFVIEILQQYF 81

Query: 84  YKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
             + + A  +ML VH++G G  G+Y  +IAE K NQV NY+R   +PL C +E K
Sbjct: 82  ALNLDQATQVMLTVHYEGKGVAGIYPRDIAETKANQVNNYARSQGHPLLCQIEPK 136


>gi|50084541|ref|YP_046051.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter sp.
           ADP1]
 gi|49530517|emb|CAG68229.1| substrate modulator for ClpAP, directs protease activity towards
           aggregated proteins [Acinetobacter sp. ADP1]
          Length = 137

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 60/88 (68%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
             +++ P LY V+L+ND+YTPM+FVI +LQ +F  + + A  +ML VH++G G  GVY  
Sbjct: 49  PPELKRPPLYAVVLLNDDYTPMDFVIEILQQYFALNLDQATQVMLTVHYEGKGVAGVYPR 108

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           +IAE K NQV NY+R   +PL C +E K
Sbjct: 109 DIAETKANQVNNYARSQGHPLLCQIEPK 136


>gi|301167864|emb|CBW27449.1| ATP-dependent Clp protease adaptor protein clpS [Bacteriovorax
           marinus SJ]
          Length = 123

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/77 (54%), Positives = 60/77 (77%)

Query: 60  YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQ 119
           Y+VL+ ND+YT MEFVI++LQ  F K+ E A+ IMLKVH++GIG CGVY+YEIAE K  +
Sbjct: 44  YKVLIHNDDYTTMEFVIYILQKVFAKNLEEAQAIMLKVHNEGIGVCGVYSYEIAETKSEK 103

Query: 120 VMNYSRQHQYPLQCIME 136
           V   ++++ +PL+C +E
Sbjct: 104 VNQEAKENGHPLKCTIE 120


>gi|39931007|sp|Q7VFW0|CLPS_HELHP RecName: Full=ATP-dependent Clp protease adapter protein ClpS
          Length = 99

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 59/91 (64%)

Query: 47  EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
           E    + +  PK+YRVLL+ND++T M+FV  +L   F K  + A  I LK+H+ G G CG
Sbjct: 7   ETSLDTLLEEPKMYRVLLLNDDWTAMDFVARILMEVFDKTSDEATAITLKIHNDGKGVCG 66

Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +Y Y+IAE+K+  V   ++QH YPL+ I E+
Sbjct: 67  IYTYDIAELKMQIVSQMAKQHGYPLRVITEE 97


>gi|152997267|ref|YP_001342102.1| ATP-dependent Clp protease adaptor protein ClpS [Marinomonas sp.
           MWYL1]
 gi|150838191|gb|ABR72167.1| ATP-dependent Clp protease adaptor protein ClpS [Marinomonas sp.
           MWYL1]
          Length = 116

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 62/87 (71%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
            ++++ P +Y+V+L ND+YTPM+FV+ VLQ FF  D E A  +ML+VH +G G CG+Y +
Sbjct: 28  ETELKPPSMYQVVLFNDDYTPMDFVVFVLQRFFSMDGEKANQVMLEVHQKGKGVCGIYPF 87

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +IAE KV  V  +  Q+++PL C +++
Sbjct: 88  DIAETKVAMVQQFVEQNEHPLMCDLQK 114


>gi|114778159|ref|ZP_01453046.1| hypothetical protein SPV1_00837 [Mariprofundus ferrooxydans PV-1]
 gi|114551577|gb|EAU54131.1| hypothetical protein SPV1_00837 [Mariprofundus ferrooxydans PV-1]
          Length = 112

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 67/102 (65%), Gaps = 1/102 (0%)

Query: 37  IAEFDNCLDSEVRFS-SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
           I   D+  + E   +  +++ P ++R+L++ND++TPM+FV+ VL  FF+K   TA  +ML
Sbjct: 4   ITTPDSVRNPETETAEPQLQPPPMFRILMLNDDFTPMDFVVDVLIRFFHKSEATANQLML 63

Query: 96  KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           ++H +G   CG+Y  +IAE K+ QV   SR   +PL+CIME+
Sbjct: 64  QIHLEGRAMCGIYPRDIAETKLQQVEAASRTSGHPLRCIMEK 105


>gi|77360665|ref|YP_340240.1| modulator of ClpA substrate specificity [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76875576|emb|CAI86797.1| modulator of ClpA substrate specificity [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 102

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 60/86 (69%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           K++ P+ Y+V+L ND+YTPM+FVI VL  FF  D + A  +ML++H QG G CGV++ ++
Sbjct: 17  KLQPPRKYKVVLNNDDYTPMDFVIEVLMTFFNMDSDRATDVMLQIHQQGKGICGVFSSDV 76

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQK 138
           A  K  QV  YSR +++PL C  EQ+
Sbjct: 77  AHTKAEQVNRYSRDNEHPLLCSCEQE 102


>gi|297183971|gb|ADI20091.1| uncharacterized conserved protein [uncultured alpha proteobacterium
           EB080_L06A09]
          Length = 111

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 73/110 (66%), Gaps = 2/110 (1%)

Query: 31  RMNKKGIAEFDNCLDSEVRFSSKVRVPK--LYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
           ++N+K I   D  +D  +   +  +  K  +Y+VLL+ND+YTPMEFV+H+L+ +F     
Sbjct: 2   QINEKAIMSEDENIDVGLATKATPKTKKPKMYKVLLLNDDYTPMEFVVHILERYFGTSGS 61

Query: 89  TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            A  +M+ VH +G+   GV++++IAE KV QV   +R+HQ+PLQC ME++
Sbjct: 62  QAYELMMVVHQKGLAVVGVFSHDIAETKVMQVTELARKHQHPLQCTMEKE 111


>gi|262370290|ref|ZP_06063616.1| substrate modulator for ClpAP [Acinetobacter johnsonii SH046]
 gi|262314632|gb|EEY95673.1| substrate modulator for ClpAP [Acinetobacter johnsonii SH046]
          Length = 138

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 60/88 (68%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
             +++ P LY V+L+ND+YTPM+FVI +LQ +F  + + A  +ML VH++G G  GVY  
Sbjct: 50  PPELKRPPLYAVVLMNDDYTPMDFVIEILQQYFALNLDQATQVMLTVHYEGKGVAGVYPR 109

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           +IAE K NQV NY+R   +PL C +E K
Sbjct: 110 DIAETKANQVNNYARSQGHPLLCQIEPK 137


>gi|320354854|ref|YP_004196193.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfobulbus
           propionicus DSM 2032]
 gi|320123356|gb|ADW18902.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfobulbus
           propionicus DSM 2032]
          Length = 105

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 63/91 (69%)

Query: 47  EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
           + R   +++ P LY+VLL ND+YT M+FV+ +LQ  F+K+ + A  IML VHHQG+G  G
Sbjct: 13  QTRDKEQLQEPPLYKVLLHNDDYTTMDFVVMILQTVFHKNTDEATRIMLNVHHQGVGIAG 72

Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           VY  EI E KV  V   ++++Q+PL+C +E+
Sbjct: 73  VYTREIGETKVAIVHRLAKRNQFPLRCSLEK 103


>gi|37525540|ref|NP_928884.1| ATP-dependent Clp protease adaptor protein ClpS [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|39930943|sp|Q7N6F7|CLPS_PHOLL RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|36784968|emb|CAE13886.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 106

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 66/103 (64%), Gaps = 4/103 (3%)

Query: 39  EFDNCLDSEVRF----SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
           E+ N L S+         K++ P +Y+V+L ND+YTPMEFV+ VL+ FF  D E A  +M
Sbjct: 3   EYHNSLKSKESVKDERQQKLQPPSMYQVILNNDDYTPMEFVVDVLRKFFSYDIERATQLM 62

Query: 95  LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           L VH+QG   CGVY  E+AE K  QV  Y++++ +PL C +E+
Sbjct: 63  LDVHYQGKAVCGVYTAEVAETKAAQVNMYAKEYGHPLLCTLEK 105


>gi|303327023|ref|ZP_07357465.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio sp.
           3_1_syn3]
 gi|302863011|gb|EFL85943.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio sp.
           3_1_syn3]
          Length = 106

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 62/95 (65%), Gaps = 2/95 (2%)

Query: 45  DSEVR--FSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
           D E R     K++ P  YRVLL ND+YT M+FVI++L   F+K  E A  IML VH QG+
Sbjct: 10  DGESRTIVVKKLKEPDRYRVLLHNDDYTSMDFVINILCGVFHKPLEEATAIMLAVHQQGV 69

Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           G+CG+Y  E+AE KV++V   +    +PL+C ME+
Sbjct: 70  GQCGIYTREVAEAKVSRVHREAHGAGFPLRCTMEK 104


>gi|315179860|gb|ADT86774.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio furnissii
           NCTC 11218]
          Length = 80

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/79 (51%), Positives = 57/79 (72%)

Query: 59  LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
           +Y V+L ND+YTPM+FVI +L+ FF  D E A  +MLKVH++G   CG +  E+AE KV 
Sbjct: 1   MYNVVLNNDDYTPMDFVIEILERFFSMDIERATQVMLKVHYEGKAICGTFTAEVAETKVA 60

Query: 119 QVMNYSRQHQYPLQCIMEQ 137
           QV  YSR++++PL C ME+
Sbjct: 61  QVTMYSRENEHPLLCTMER 79


>gi|162452665|ref|YP_001615032.1| hypothetical protein sce4389 [Sorangium cellulosum 'So ce 56']
 gi|161163247|emb|CAN94552.1| hypothetical protein sce4389 [Sorangium cellulosum 'So ce 56']
          Length = 132

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/126 (37%), Positives = 70/126 (55%), Gaps = 5/126 (3%)

Query: 13  VKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPM 72
            +R G LA++   FM +    ++     D   D       KV  P+ Y+V+  ND+YT M
Sbjct: 12  ARRGGALAILPDGFMPNDPEERE-----DRQGDLATERERKVEKPRRYKVVFHNDDYTTM 66

Query: 73  EFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQ 132
           EFV+ VL  FF++    A  IML VHH+G G  GVY  ++AE KV QV +++++H  PL+
Sbjct: 67  EFVVLVLMKFFHRTETEATHIMLSVHHRGHGVAGVYTKDVAETKVAQVQDFAKEHGMPLR 126

Query: 133 CIMEQK 138
              E +
Sbjct: 127 LTAEPE 132


>gi|254496296|ref|ZP_05109183.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254354484|gb|EET13132.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 107

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 66/94 (70%), Gaps = 2/94 (2%)

Query: 45  DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
           + EVR  +K+  P+ YRV+L+ND+YTPM+FV+ VL++FF+   E A  +ML+VH QG G 
Sbjct: 16  EPEVRTENKL--PRKYRVVLLNDDYTPMDFVVDVLKHFFHLSEEMAVQVMLQVHIQGKGV 73

Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           CGV+  +IAE KV  V  Y+R +Q+PL   ME +
Sbjct: 74  CGVFTRDIAETKVALVNEYARMNQHPLLSSMEPE 107


>gi|313143016|ref|ZP_07805209.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
           cinaedi CCUG 18818]
 gi|313128047|gb|EFR45664.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
           cinaedi CCUG 18818]
          Length = 87

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 56/81 (69%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PKLYRVLL+ND++T M FV H+L   F K  + A+ I LKVH++G G CG+Y Y+IAE+K
Sbjct: 5   PKLYRVLLLNDDWTAMNFVTHILMEVFDKTSQEARAITLKVHNEGKGVCGIYPYDIAELK 64

Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
              V   +++  YPL+ I E+
Sbjct: 65  TQLVSQKAKEQGYPLRVITEE 85


>gi|302879452|ref|YP_003848016.1| ATP-dependent Clp protease adaptor protein ClpS [Gallionella
           capsiferriformans ES-2]
 gi|302582241|gb|ADL56252.1| ATP-dependent Clp protease adaptor protein ClpS [Gallionella
           capsiferriformans ES-2]
          Length = 102

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 60/84 (71%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
            + P +Y+V+L ND+YT MEFVI VLQ FF  ++E A+ +ML++H+ G   CGVY  ++A
Sbjct: 18  TKPPGMYKVVLYNDDYTTMEFVIDVLQRFFAINNERAQQLMLQIHNNGSATCGVYTRDVA 77

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E KV QV  Y++Q+ +PL+C  E+
Sbjct: 78  ETKVAQVTEYAQQNGHPLRCGTEE 101


>gi|262198176|ref|YP_003269385.1| ATP-dependent Clp protease adaptor protein ClpS [Haliangium
           ochraceum DSM 14365]
 gi|262081523|gb|ACY17492.1| ATP-dependent Clp protease adaptor protein ClpS [Haliangium
           ochraceum DSM 14365]
          Length = 116

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 64/108 (59%), Gaps = 3/108 (2%)

Query: 29  DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
           DS   + G  E        ++  ++ + P LY+VLL ND+YT  EFV+ VLQ+ F +   
Sbjct: 9   DSGKKRPGTKEERGVA---IKERTRTKKPPLYKVLLHNDDYTTKEFVVWVLQSIFQRSES 65

Query: 89  TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
            A  IM+ VH+ G+G  G+Y  E+AE K+ +  N ++ H+YPLQC ME
Sbjct: 66  EAVRIMMHVHNTGVGIAGIYTLEVAETKMTKTTNLAQAHEYPLQCSME 113


>gi|146307417|ref|YP_001187882.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           mendocina ymp]
 gi|166214739|sp|A4XUY4|CLPS_PSEMY RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|145575618|gb|ABP85150.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           mendocina ymp]
          Length = 120

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 58/84 (69%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+L ND+YTPM+FV+ VL+ FF  + E A  IML VH +G   CGVY  +IA
Sbjct: 35  LQAPPMYKVVLFNDDYTPMDFVVEVLETFFGMNRELATKIMLTVHTEGRAVCGVYTRDIA 94

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E K  QV  Y+R+ Q+PL C +E+
Sbjct: 95  ETKAMQVNQYARESQHPLLCEIEK 118


>gi|330503290|ref|YP_004380159.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           mendocina NK-01]
 gi|328917576|gb|AEB58407.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           mendocina NK-01]
          Length = 120

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 58/84 (69%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+L ND+YTPM+FV+ VL+ FF  + E A  IML VH +G   CGVY  +IA
Sbjct: 35  LQAPPMYKVVLFNDDYTPMDFVVEVLETFFGMNRELATKIMLAVHTEGRAVCGVYTRDIA 94

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E K  QV  Y+R+ Q+PL C +E+
Sbjct: 95  ETKAMQVNQYARESQHPLLCEIEK 118


>gi|116328081|ref|YP_797801.1| hypothetical protein LBL_1378 [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331466|ref|YP_801184.1| hypothetical protein LBJ_1906 [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122280789|sp|Q04RP4|CLPS_LEPBJ RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|122284127|sp|Q051X7|CLPS_LEPBL RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|116120825|gb|ABJ78868.1| conserved hypothetical protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125155|gb|ABJ76426.1| conserved hypothetical protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 108

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 62/100 (62%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           I  FD    +  +   K++ P  YRV+++ND++TPMEFV+ +LQ  F++    ++ IMLK
Sbjct: 4   IFRFDTEEQTLTKEKVKLKRPSKYRVIILNDDFTPMEFVVWILQFVFHRSRAQSQQIMLK 63

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
            H  G   CGVY++++A  KV QV   + QH YPL C ME
Sbjct: 64  AHITGKALCGVYSHDVARTKVIQVQQLAEQHGYPLHCTME 103


>gi|323697696|ref|ZP_08109608.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio sp.
           ND132]
 gi|323457628|gb|EGB13493.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
           desulfuricans ND132]
          Length = 104

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 60/92 (65%)

Query: 45  DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
           DSE+    +V+ PK Y+VLL ND+YT M+FV+ +L   F++    A  IML VH+QG G 
Sbjct: 11  DSELLGQHEVKEPKKYKVLLHNDDYTTMDFVVEILVRVFHRTEAQATAIMLSVHNQGYGV 70

Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
           CGVY  E+AE KV+ V   ++   +PL+C ME
Sbjct: 71  CGVYTAEVAETKVDLVHRLAKSAGFPLKCSME 102


>gi|325267632|ref|ZP_08134284.1| ATP-dependent Clp protease adaptor protein ClpS [Kingella
           denitrificans ATCC 33394]
 gi|324980982|gb|EGC16642.1| ATP-dependent Clp protease adaptor protein ClpS [Kingella
           denitrificans ATCC 33394]
          Length = 100

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 59/85 (69%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           K+  PK Y V+L+ND+YTPM+FV+ VL   F  +HE A  +ML++HH+G G CGVY  +I
Sbjct: 13  KLTPPKRYAVVLLNDHYTPMDFVVAVLTEIFALNHEKAVAVMLQIHHEGSGVCGVYTRDI 72

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           AE K  QV+  + +  +PL CI+++
Sbjct: 73  AETKRQQVLQAADEAGHPLMCIVQE 97


>gi|119503235|ref|ZP_01625319.1| substrate modulator for ClpAP, directs protease activity towards
           aggregated proteins [marine gamma proteobacterium
           HTCC2080]
 gi|119460881|gb|EAW41972.1| substrate modulator for ClpAP, directs protease activity towards
           aggregated proteins [marine gamma proteobacterium
           HTCC2080]
          Length = 116

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 67/107 (62%), Gaps = 1/107 (0%)

Query: 31  RMNKKGIAEFDNCLDSEVRFS-SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
           +M     A+ D+  D  V  +  K++ P L++V+L+ND+YTPMEFV+ +L+++F    E 
Sbjct: 5   QMGPPDKADRDDEGDLAVAPAKPKLKRPPLFQVVLLNDDYTPMEFVVEILESYFRLGREQ 64

Query: 90  AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
           A  IML VH +G G CGVY  +IAE K  QV  Y+R   +PL C +E
Sbjct: 65  ATQIMLMVHTKGKGVCGVYPRDIAESKATQVNTYARDSGHPLLCEVE 111


>gi|126641956|ref|YP_001084940.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter
           baumannii ATCC 17978]
 gi|169633633|ref|YP_001707369.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter
           baumannii SDF]
 gi|169795754|ref|YP_001713547.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter
           baumannii AYE]
 gi|213157554|ref|YP_002319599.1| ATP-dependent Clp protease adaptor protein [Acinetobacter baumannii
           AB0057]
 gi|215483239|ref|YP_002325446.1| ATP-dependent Clp protease adaptor protein ClpS family protein
           [Acinetobacter baumannii AB307-0294]
 gi|239503974|ref|ZP_04663284.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter
           baumannii AB900]
 gi|260554817|ref|ZP_05827038.1| substrate modulator for ClpAP [Acinetobacter baumannii ATCC 19606]
 gi|294837620|ref|ZP_06782303.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter sp.
           6013113]
 gi|294840916|ref|ZP_06785599.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter sp.
           6014059]
 gi|294856990|ref|ZP_06794759.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter sp.
           6013150]
 gi|301344683|ref|ZP_07225424.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter
           baumannii AB056]
 gi|301511220|ref|ZP_07236457.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter
           baumannii AB058]
 gi|301595568|ref|ZP_07240576.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter
           baumannii AB059]
 gi|126387840|gb|ABO12338.1| putative protease [Acinetobacter baumannii ATCC 17978]
 gi|169148681|emb|CAM86547.1| substrate modulator for ClpAP, directs protease activity towards
           aggregated proteins [Acinetobacter baumannii AYE]
 gi|169152425|emb|CAP01380.1| substrate modulator for ClpAP, directs protease activity towards
           aggregated proteins [Acinetobacter baumannii]
 gi|213056714|gb|ACJ41616.1| ATP-dependent Clp protease adaptor protein [Acinetobacter baumannii
           AB0057]
 gi|213988872|gb|ACJ59171.1| ATP-dependent Clp protease adaptor protein ClpS family protein
           [Acinetobacter baumannii AB307-0294]
 gi|260411359|gb|EEX04656.1| substrate modulator for ClpAP [Acinetobacter baumannii ATCC 19606]
 gi|322508668|gb|ADX04122.1| clpS [Acinetobacter baumannii 1656-2]
 gi|323518276|gb|ADX92657.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter
           baumannii TCDC-AB0715]
          Length = 137

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 59/88 (67%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
             +++ P LY V+L+ND+YTPM+FVI +LQ +F  + + A  +ML VH++G G  GVY  
Sbjct: 49  PPELKRPPLYAVVLLNDDYTPMDFVIEILQQYFAMNLDQATQVMLTVHYEGKGTAGVYPR 108

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           +IAE K N V NY+R   +PL C +E K
Sbjct: 109 DIAETKANLVNNYARSQGHPLLCQIEPK 136


>gi|32267064|ref|NP_861096.1| hypothetical protein HH1565 [Helicobacter hepaticus ATCC 51449]
 gi|32263116|gb|AAP78162.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 87

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 56/81 (69%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PK+YRVLL+ND++T M+FV  +L   F K  + A  I LK+H+ G G CG+Y Y+IAE+K
Sbjct: 5   PKMYRVLLLNDDWTAMDFVARILMEVFDKTSDEATAITLKIHNDGKGVCGIYTYDIAELK 64

Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
           +  V   ++QH YPL+ I E+
Sbjct: 65  MQIVSQMAKQHGYPLRVITEE 85


>gi|118602881|ref|YP_904096.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567820|gb|ABL02625.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 99

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 38/77 (49%), Positives = 58/77 (75%)

Query: 61  RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQV 120
           +VLL+ND+YT MEFVI VL  FF K  E A+  MLK+H +G G CG+++Y+IA+ KV QV
Sbjct: 20  QVLLLNDDYTTMEFVIDVLVQFFSKSEEAAQATMLKIHIEGEGICGIFSYDIAQTKVTQV 79

Query: 121 MNYSRQHQYPLQCIMEQ 137
           + ++R+++ PL C++ +
Sbjct: 80  IEFARKNEQPLICVLRE 96


>gi|296273990|ref|YP_003656621.1| ATP-dependent Clp protease adaptor protein ClpS [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098164|gb|ADG94114.1| ATP-dependent Clp protease adaptor protein ClpS [Arcobacter
           nitrofigilis DSM 7299]
          Length = 99

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 44/97 (45%), Positives = 62/97 (63%)

Query: 42  NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
           N  + E+    +V+ PK Y+VLL+NDNY+ M+FVI +L   F K  + A  IML +H+ G
Sbjct: 3   NEFEIELNDDLEVQEPKKYKVLLLNDNYSTMDFVIDILVKIFKKTTDEATVIMLNIHNNG 62

Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
              CG Y +EIA  KV QV N +RQ  +PL+ IME++
Sbjct: 63  KEVCGTYTHEIASTKVMQVKNLARQKGFPLKAIMEEE 99


>gi|184158341|ref|YP_001846680.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter
           baumannii ACICU]
 gi|183209935|gb|ACC57333.1| uncharacterized conserved protein [Acinetobacter baumannii ACICU]
          Length = 93

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 59/88 (67%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
             +++ P LY V+L+ND+YTPM+FVI +LQ +F  + + A  +ML VH++G G  GVY  
Sbjct: 5   PPELKRPPLYAVVLLNDDYTPMDFVIEILQQYFAMNLDQATQVMLTVHYEGKGTAGVYPR 64

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           +IAE K N V NY+R   +PL C +E K
Sbjct: 65  DIAETKANLVNNYARSQGHPLLCQIEPK 92


>gi|94263020|ref|ZP_01286839.1| ATP-dependent Clp protease adaptor protein ClpS [delta
           proteobacterium MLMS-1]
 gi|93456563|gb|EAT06671.1| ATP-dependent Clp protease adaptor protein ClpS [delta
           proteobacterium MLMS-1]
          Length = 103

 Score = 90.5 bits (223), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 59/85 (69%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           +R P LY+VLL ND+YT M+FV+ VL+  F+ D   A  IM+ VH +G+G  GVY  + A
Sbjct: 19  LRRPPLYKVLLHNDDYTTMDFVVMVLEMVFHHDQAAAHRIMMNVHREGVGVAGVYPRDSA 78

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQK 138
           E KV  V N +R+H+YPL+C +EQ+
Sbjct: 79  ETKVAMVHNLARKHEYPLKCSLEQE 103


>gi|24214803|ref|NP_712284.1| ATP-dependent Clp protease adaptor protein ClpS [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45657680|ref|YP_001766.1| hypothetical protein LIC11815 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|37077224|sp|Q8F4D8|CLPS_LEPIN RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|67460336|sp|Q72RD1|CLPS_LEPIC RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|24195812|gb|AAN49302.1| ATP-dependent Clp protease adaptor protein ClpS [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45600920|gb|AAS70403.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 111

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 61/99 (61%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           I  FD    +  +   K++ P  YRV+++ND++TPMEFV+ +LQ  F++    ++ IMLK
Sbjct: 4   IFRFDTEEQTLTKEKIKLKKPSKYRVIILNDDFTPMEFVVWILQMVFHRSRAESQQIMLK 63

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIM 135
            H  G   CGVY++++A  KV QV   + QH YPL C M
Sbjct: 64  AHITGKALCGVYSHDVARTKVAQVQQLAEQHGYPLHCTM 102


>gi|222824061|ref|YP_002575635.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter lari
           RM2100]
 gi|222539283|gb|ACM64384.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter lari
           RM2100]
          Length = 97

 Score = 90.1 bits (222), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 63/96 (65%)

Query: 43  CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
            L +E+    K+  PK+++VLL+ND+ T MEFVI VL N F+ D E A  IML++H+QG 
Sbjct: 2   SLKNEILEQQKLTEPKMFKVLLLNDDITTMEFVIEVLMNIFHHDFEKASAIMLEIHNQGS 61

Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           G CG+Y  EIA  K  QV   ++ + +PLQ  +E++
Sbjct: 62  GICGIYTEEIALSKKQQVDLAAKSNNFPLQTRIEEQ 97


>gi|254491965|ref|ZP_05105143.1| ATP-dependent Clp protease adaptor protein ClpS [Methylophaga
           thiooxidans DMS010]
 gi|224462780|gb|EEF79051.1| ATP-dependent Clp protease adaptor protein ClpS [Methylophaga
           thiooxydans DMS010]
          Length = 75

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 55/75 (73%)

Query: 64  LVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNY 123
           ++ND+YTPM+FV+ VL+N F    E A   ML+VH +G   CG++ YEIAE KV QV +Y
Sbjct: 1   MLNDDYTPMDFVVEVLENLFGMGREKATQTMLQVHTEGSALCGIFTYEIAEAKVEQVNSY 60

Query: 124 SRQHQYPLQCIMEQK 138
           S++H +PLQC ME++
Sbjct: 61  SQRHGHPLQCTMEEE 75


>gi|116050608|ref|YP_790573.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|152987145|ref|YP_001347950.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           aeruginosa PA7]
 gi|296388919|ref|ZP_06878394.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           aeruginosa PAb1]
 gi|12230856|sp|Q9I0L7|CLPS_PSEAE RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|122259731|sp|Q02NB3|CLPS_PSEAB RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|166214738|sp|A6V4G5|CLPS_PSEA7 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|115585829|gb|ABJ11844.1| ATP-dependent Clp protease adaptor protein clpS [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|150962303|gb|ABR84328.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 122

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 58/84 (69%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P LY+V+L ND+YTPM+FV+ VL+ FF  D E A  IML VH QG   CG++  ++A
Sbjct: 37  LQPPPLYKVVLFNDDYTPMDFVVEVLEVFFNMDREKATKIMLTVHTQGKAVCGLFTRDVA 96

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E K  QV  Y+R+ Q+PL C +E+
Sbjct: 97  ETKAMQVNQYARESQHPLLCEIEK 120


>gi|307721665|ref|YP_003892805.1| ATP-dependent Clp protease adaptor protein ClpS [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979758|gb|ADN09793.1| ATP-dependent Clp protease adaptor protein ClpS [Sulfurimonas
           autotrophica DSM 16294]
          Length = 99

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 62/92 (67%)

Query: 47  EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
           E+   + ++ PK Y+V L+ND+YT M+FV+ +L + F+K +E A+ IML+VH    G CG
Sbjct: 8   EIDEDTALKYPKKYKVFLLNDDYTSMDFVVDILMSIFHKSYEQAQDIMLEVHKNDRGLCG 67

Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           VY YEIAE K+ QV   ++   +PL+  ME++
Sbjct: 68  VYTYEIAETKIMQVRRKAKDSGFPLKATMEEE 99


>gi|283850415|ref|ZP_06367704.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio sp.
           FW1012B]
 gi|283574441|gb|EFC22412.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio sp.
           FW1012B]
          Length = 100

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 60/90 (66%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
           V     VR P+ Y+VLL ND+YT MEFV+ VL   F+K+   A  IML VH+ G+G CG 
Sbjct: 10  VDVEEDVREPRRYKVLLHNDDYTTMEFVVQVLVGVFHKNENEATQIMLNVHNNGVGVCGE 69

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +  E+AE+KV+ V   ++++ YPL+C ME+
Sbjct: 70  FTAEVAELKVSLVHRLAKENGYPLKCSMEE 99


>gi|170722578|ref|YP_001750266.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas putida
           W619]
 gi|229889823|sp|B1JBE9|CLPS_PSEPW RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|169760581|gb|ACA73897.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas putida
           W619]
          Length = 120

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 58/84 (69%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+L ND+YTPM+FV+ VL+ FF  + E A  IML VH +G   CG++  +IA
Sbjct: 35  LQAPPMYKVVLFNDDYTPMDFVVEVLETFFSLNRELATKIMLTVHTEGRAVCGLFTRDIA 94

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E K  QV  Y+R+ Q+PL C +E+
Sbjct: 95  ETKAMQVNQYARESQHPLLCEIEK 118


>gi|258546117|ref|ZP_05706351.1| ATP-dependent Clp protease adaptor protein ClpS [Cardiobacterium
           hominis ATCC 15826]
 gi|258518542|gb|EEV87401.1| ATP-dependent Clp protease adaptor protein ClpS [Cardiobacterium
           hominis ATCC 15826]
          Length = 104

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 58/79 (73%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           P+ Y V+L+ND+YT M+FV+ VL  +F K+   A+ IM +VH QG G CG+Y ++IAE K
Sbjct: 23  PRQYEVVLLNDDYTTMDFVVDVLMRYFNKNFAEAEDIMYQVHEQGSGVCGIYPFDIAESK 82

Query: 117 VNQVMNYSRQHQYPLQCIM 135
           VNQV+ ++R + YPL C++
Sbjct: 83  VNQVIEHARANNYPLLCVL 101


>gi|26990714|ref|NP_746139.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas putida
           KT2440]
 gi|148547059|ref|YP_001267161.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas putida
           F1]
 gi|167034610|ref|YP_001669841.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas putida
           GB-1]
 gi|37077092|sp|Q88FS4|CLPS_PSEPK RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|166214740|sp|A5W1G7|CLPS_PSEP1 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|189082475|sp|B0KLX7|CLPS_PSEPG RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|24985707|gb|AAN69603.1|AE016593_11 conserved hypothetical protein [Pseudomonas putida KT2440]
 gi|148511117|gb|ABQ77977.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas putida
           F1]
 gi|166861098|gb|ABY99505.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas putida
           GB-1]
          Length = 120

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 58/84 (69%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+L ND+YTPM+FV+ VL+ FF  + E A  IML VH +G   CG++  +IA
Sbjct: 35  LQAPPMYKVVLFNDDYTPMDFVVEVLETFFSLNRELATKIMLTVHTEGRAVCGLFTRDIA 94

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E K  QV  Y+R+ Q+PL C +E+
Sbjct: 95  ETKAMQVNQYARESQHPLLCEIEK 118


>gi|260550322|ref|ZP_05824534.1| substrate modulator for ClpAP [Acinetobacter sp. RUH2624]
 gi|260406634|gb|EEX00115.1| substrate modulator for ClpAP [Acinetobacter sp. RUH2624]
          Length = 137

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 59/88 (67%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
             +++ P LY V+L+ND+YTPM+FVI +LQ +F  + + A  +ML VH++G G  GVY  
Sbjct: 49  PPELKRPPLYAVVLLNDDYTPMDFVIEILQQYFAMNLDQATQVMLTVHYEGKGTAGVYPR 108

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           +IAE K N V NY+R   +PL C ++ K
Sbjct: 109 DIAETKANLVNNYARSQGHPLLCQIKPK 136


>gi|330814167|ref|YP_004358406.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327487262|gb|AEA81667.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 101

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 58/90 (64%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           + S+K   P  Y V+L+ND++T MEFVI VL  FF   +  AK +MLK+H  G   CG Y
Sbjct: 12  KLSTKTTKPPYYNVILLNDDFTTMEFVIQVLIIFFKMTNNKAKNVMLKIHEDGSAICGTY 71

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
             +IA+   + V NY++Q+ +PL+CIME K
Sbjct: 72  TKDIAKTLTSLVNNYAKQNLFPLKCIMEVK 101


>gi|325273424|ref|ZP_08139676.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas sp.
           TJI-51]
 gi|324101437|gb|EGB99031.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas sp.
           TJI-51]
          Length = 120

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 58/84 (69%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+L ND+YTPM+FV+ VL+ FF  + E A  IML VH +G   CG++  +IA
Sbjct: 35  LQAPPMYKVVLFNDDYTPMDFVVEVLETFFSLNRELATKIMLTVHTEGRAVCGLFTRDIA 94

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E K  QV  Y+R+ Q+PL C +E+
Sbjct: 95  ETKAMQVNQYARESQHPLLCEIEK 118


>gi|262279297|ref|ZP_06057082.1| substrate modulator for ClpAP [Acinetobacter calcoaceticus RUH2202]
 gi|293607903|ref|ZP_06690206.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|299769891|ref|YP_003731917.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter sp.
           DR1]
 gi|262259648|gb|EEY78381.1| substrate modulator for ClpAP [Acinetobacter calcoaceticus RUH2202]
 gi|292828476|gb|EFF86838.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|298699979|gb|ADI90544.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter sp.
           DR1]
 gi|325122454|gb|ADY81977.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 137

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 59/88 (67%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
             +++ P LY V+L+ND+YTPM+FVI +LQ +F  + + A  +ML VH++G G  GVY  
Sbjct: 49  PPELKRPPLYAVVLMNDDYTPMDFVIEILQQYFAMNLDQATQVMLTVHYEGKGIAGVYPR 108

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           +IAE K N V NY+R   +PL C +E K
Sbjct: 109 DIAETKANLVNNYARSQGHPLLCQIEPK 136


>gi|320323776|gb|EFW79860.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320327916|gb|EFW83921.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330881201|gb|EGH15350.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 120

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 58/84 (69%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           +R P +Y+V+L ND+YTPM+FV+ VL+ FF  + E A  +ML VH +G   CG++  +IA
Sbjct: 35  LRAPPMYKVVLFNDDYTPMDFVVEVLEVFFNLNRELATKVMLAVHTEGRAVCGLFTRDIA 94

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E K  QV  Y+R+ Q+PL C +E+
Sbjct: 95  ETKAMQVNQYARESQHPLLCEIEK 118


>gi|253828028|ref|ZP_04870913.1| ATP-dependent Clp protease adaptor protein ClpS [Helicobacter
           canadensis MIT 98-5491]
 gi|253511434|gb|EES90093.1| ATP-dependent Clp protease adaptor protein ClpS [Helicobacter
           canadensis MIT 98-5491]
          Length = 101

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 64/96 (66%)

Query: 42  NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
           N +++      K++ P  Y+V+L+ND+YT  +FVI +LQ  F+K  E +  +ML++HH G
Sbjct: 5   NQIENATETLEKLQEPIRYKVILLNDDYTTQDFVIEILQKVFHKGFEESLNLMLQIHHNG 64

Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            G CG+Y Y+IAE K  QV   +++ Q+PL+ I+E+
Sbjct: 65  RGMCGIYPYDIAETKAMQVRKMAKEKQFPLRAILEK 100


>gi|320537709|ref|ZP_08037635.1| ATP-dependent Clp protease adaptor protein ClpS [Treponema
           phagedenis F0421]
 gi|320145446|gb|EFW37136.1| ATP-dependent Clp protease adaptor protein ClpS [Treponema
           phagedenis F0421]
          Length = 120

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 64/95 (67%)

Query: 44  LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIG 103
           ++S V    K++ P  YRVLL+ND+ T M+FVI +L   F+K+++ A+ IML +H QG G
Sbjct: 26  IESTVLIKEKIKEPGFYRVLLLNDDITTMDFVISILIEVFHKNYKEAEIIMLTIHTQGSG 85

Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
             G Y Y+IA  +  +V   ++++ +PL+CIME++
Sbjct: 86  LVGTYTYDIAATRCKKVEMLAQENGFPLKCIMEKE 120


>gi|224369760|ref|YP_002603924.1| ClpS [Desulfobacterium autotrophicum HRM2]
 gi|259491245|sp|C0QI24|CLPS_DESAH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|223692477|gb|ACN15760.1| ClpS [Desulfobacterium autotrophicum HRM2]
          Length = 104

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 4/94 (4%)

Query: 49  RFSSKVR----VPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
           R SSKV      P +YRV+L ND+YT MEFV+ +L   F K  E A  IML +H QG G 
Sbjct: 11  RTSSKVEKKEGYPPMYRVVLHNDDYTTMEFVVQILITVFGKSLEKASIIMLNIHKQGKGI 70

Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           CG Y  E+AE KVN V + +R+  +PL+  ME++
Sbjct: 71  CGSYTREVAETKVNTVHHLAREQGFPLKSTMEKE 104


>gi|149919976|ref|ZP_01908451.1| ATP-dependent Clp protease adaptor protein clpS [Plesiocystis
           pacifica SIR-1]
 gi|149819249|gb|EDM78683.1| ATP-dependent Clp protease adaptor protein clpS [Plesiocystis
           pacifica SIR-1]
          Length = 113

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 68/112 (60%), Gaps = 9/112 (8%)

Query: 27  MADSRMN--KKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFY 84
           M+D R +  ++G+A        + R   K + P++YRVLL ND+YTPM+FV+ +LQ  F 
Sbjct: 1   MSDKRKDDPQRGVA-------LKTRDERKSKRPRMYRVLLHNDDYTPMDFVVRLLQTVFR 53

Query: 85  KDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
                A  IML VH++G+G  GV+ +EIAE KV Q    +RQ++ PL   ME
Sbjct: 54  HSEGRATEIMLHVHNKGVGVAGVFTHEIAETKVAQTHMLARQNECPLMASME 105


>gi|319956042|ref|YP_004167305.1| ATP-dependent clp protease adaptor protein clps [Nitratifractor
           salsuginis DSM 16511]
 gi|319418446|gb|ADV45556.1| ATP-dependent Clp protease adaptor protein ClpS [Nitratifractor
           salsuginis DSM 16511]
          Length = 99

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 55/80 (68%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           P+LYRV+L ND+YT MEFVI VL++ F+K    A+ IM  VH +G   CGVY YEIAE K
Sbjct: 17  PELYRVILHNDDYTTMEFVIDVLRSIFHKSTREAEEIMWTVHEKGQAVCGVYTYEIAETK 76

Query: 117 VNQVMNYSRQHQYPLQCIME 136
           V QV   +RQ+ +PL   +E
Sbjct: 77  VEQVKLKARQNGFPLLATLE 96


>gi|104781332|ref|YP_607830.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           entomophila L48]
 gi|95110319|emb|CAK15026.1| ATP-dependent Clp protease adaptor protein clpS [Pseudomonas
           entomophila L48]
          Length = 124

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 58/84 (69%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+L ND+YTPM+FV+ VL+ FF  + E A  IML VH +G   CG++  +IA
Sbjct: 39  LQAPPMYKVVLFNDDYTPMDFVVEVLETFFNLNRELATKIMLTVHTEGRAVCGLFTRDIA 98

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E K  QV  Y+R+ Q+PL C +E+
Sbjct: 99  ETKAMQVNQYARESQHPLLCEIEK 122


>gi|264678276|ref|YP_003278183.1| ATP-dependent Clp protease adaptor protein ClpS [Comamonas
           testosteroni CNB-2]
 gi|299533529|ref|ZP_07046906.1| ATP-dependent Clp protease adaptor protein ClpS [Comamonas
           testosteroni S44]
 gi|262208789|gb|ACY32887.1| ATP-dependent Clp protease adaptor protein ClpS [Comamonas
           testosteroni CNB-2]
 gi|298718487|gb|EFI59467.1| ATP-dependent Clp protease adaptor protein ClpS [Comamonas
           testosteroni S44]
          Length = 95

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 56/78 (71%)

Query: 59  LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
           +Y+V+++ND++TPMEFVI VLQ  F KD E+A  IMLK+H  G G CGVY+ ++A  KV 
Sbjct: 15  MYQVVMLNDDFTPMEFVIAVLQELFGKDRESATQIMLKIHLDGRGVCGVYSQDVAATKVE 74

Query: 119 QVMNYSRQHQYPLQCIME 136
           QV+  +++  +PLQ   E
Sbjct: 75  QVLQAAQKAGHPLQATFE 92


>gi|330875785|gb|EGH09934.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 120

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 58/84 (69%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+L ND+YTPM+FV+ VL+ FF  + E A  +ML VH +G   CG++  +IA
Sbjct: 35  LQAPPMYKVVLFNDDYTPMDFVVEVLEAFFNLNRELATKVMLAVHTEGRAVCGLFTRDIA 94

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E K  QV  Y+R+ Q+PL C +E+
Sbjct: 95  ETKAAQVNQYARESQHPLLCEIEK 118


>gi|114771314|ref|ZP_01448734.1| ATP-dependent Clp protease, adaptor protein ClpS [alpha
           proteobacterium HTCC2255]
 gi|114548239|gb|EAU51126.1| ATP-dependent Clp protease, adaptor protein ClpS [alpha
           proteobacterium HTCC2255]
          Length = 120

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 60/80 (75%)

Query: 59  LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
           +Y+V+L+ND+YTPMEFV+H+L+ +F      A  +M+ VH +G+   GV++++IAE KV 
Sbjct: 41  MYKVILLNDDYTPMEFVVHILERYFGTTGSQAYELMMLVHQKGLAVVGVFSHDIAETKVM 100

Query: 119 QVMNYSRQHQYPLQCIMEQK 138
           QV   +++HQ+PLQC ME++
Sbjct: 101 QVTELAQKHQHPLQCTMEKE 120


>gi|116747493|ref|YP_844180.1| ATP-dependent Clp protease adaptor protein ClpS [Syntrophobacter
           fumaroxidans MPOB]
 gi|116696557|gb|ABK15745.1| ATP-dependent Clp protease adaptor protein ClpS [Syntrophobacter
           fumaroxidans MPOB]
          Length = 80

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/79 (51%), Positives = 55/79 (69%)

Query: 59  LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
           +YRVLL ND+YT MEFV+ +LQ+ F+K    A  IML VH  G G CGV+  E+AE KV 
Sbjct: 1   MYRVLLHNDDYTTMEFVVEILQSVFHKSPSEATRIMLLVHKSGTGVCGVFTAEVAETKVE 60

Query: 119 QVMNYSRQHQYPLQCIMEQ 137
            V + +R++ +PLQC ME+
Sbjct: 61  LVHHLARKNGFPLQCSMEE 79


>gi|256829859|ref|YP_003158587.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579035|gb|ACU90171.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfomicrobium
           baculatum DSM 4028]
          Length = 104

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 59/93 (63%)

Query: 45  DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
           D ++    +++ P+ ++VLL ND+YT M+FV+ VL N F K    +  IM+ VH +GIG 
Sbjct: 11  DPDIMVEDQLQEPRQFKVLLHNDDYTSMDFVVEVLMNVFGKSESESFAIMMSVHEKGIGL 70

Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           CG+Y  E+AE KV  V   +R   +PL+C ME+
Sbjct: 71  CGIYTAEVAETKVQLVHQMARARSFPLRCSMEE 103


>gi|317153522|ref|YP_004121570.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316943773|gb|ADU62824.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 104

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 54/84 (64%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           +VR P+ Y+VLL ND+YT M+FVI VL   F K    A  IML VH++G G CG Y  E+
Sbjct: 19  EVREPRKYKVLLHNDDYTTMDFVIEVLVRVFRKSEAQAMAIMLAVHNEGYGVCGTYTAEV 78

Query: 113 AEMKVNQVMNYSRQHQYPLQCIME 136
           AE KV+ V   +R   +PL+C ME
Sbjct: 79  AETKVDMVHRLARSAGFPLKCSME 102


>gi|330810450|ref|YP_004354912.1| ATP-dependent Clp protease adapter protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327378558|gb|AEA69908.1| ATP-dependent Clp protease adapter protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 120

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 58/84 (69%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+L ND+YTPM+FV+ VL+ FF  + E A  +ML VH +G   CGV+  +IA
Sbjct: 35  LQAPPMYKVVLFNDDYTPMDFVVEVLEVFFNLNRELATKVMLAVHTEGRAVCGVFTRDIA 94

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E K  QV  Y+R+ Q+PL C +E+
Sbjct: 95  ETKAMQVNQYARESQHPLLCEIEK 118


>gi|77459813|ref|YP_349320.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           fluorescens Pf0-1]
 gi|77383816|gb|ABA75329.1| ATP-dependent clp protease adaptor protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 127

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 58/84 (69%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+L ND+YTPM+FV+ VL+ FF  + E A  +ML VH +G   CGV+  +IA
Sbjct: 42  LQAPPMYKVVLFNDDYTPMDFVVEVLEVFFNLNRELATKVMLAVHTEGRAVCGVFTRDIA 101

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E K  QV  Y+R+ Q+PL C +E+
Sbjct: 102 ETKAMQVNQYARESQHPLLCEIEK 125


>gi|312961674|ref|ZP_07776172.1| ATP-dependent Clp protease adapter protein [Pseudomonas fluorescens
           WH6]
 gi|311283933|gb|EFQ62516.1| ATP-dependent Clp protease adapter protein [Pseudomonas fluorescens
           WH6]
          Length = 122

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 58/84 (69%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+L ND+YTPM+FV+ VL+ FF  + E A  +ML VH +G   CGV+  +IA
Sbjct: 37  LQAPPMYKVVLFNDDYTPMDFVVEVLEVFFNLNRELATKVMLAVHTEGRAVCGVFTRDIA 96

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E K  QV  Y+R+ Q+PL C +E+
Sbjct: 97  ETKAMQVNQYARESQHPLLCEIEK 120


>gi|326538898|gb|ADZ87113.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella
           melitensis M5-90]
          Length = 63

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 38/63 (60%), Positives = 53/63 (84%)

Query: 76  IHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIM 135
           +HVLQ FF K+ + A  IML VH+ G+GECGV+ YE+AE KV+QVM+++RQ+Q+PLQC+M
Sbjct: 1   MHVLQRFFQKNLDDATRIMLHVHNHGVGECGVFTYEVAETKVSQVMDFARQNQHPLQCVM 60

Query: 136 EQK 138
           E+K
Sbjct: 61  EKK 63


>gi|229591241|ref|YP_002873360.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           fluorescens SBW25]
 gi|259491249|sp|C3JY63|CLPS_PSEFS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|229363107|emb|CAY50115.1| ATP-dependent clp protease adaptor protein [Pseudomonas fluorescens
           SBW25]
          Length = 122

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 58/84 (69%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+L ND+YTPM+FV+ VL+ FF  + E A  +ML VH +G   CGV+  +IA
Sbjct: 37  LQAPPMYKVVLFNDDYTPMDFVVEVLEVFFNLNRELATKVMLAVHTEGRAVCGVFTRDIA 96

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E K  QV  Y+R+ Q+PL C +E+
Sbjct: 97  ETKAMQVNQYARESQHPLLCEIEK 120


>gi|28870518|ref|NP_793137.1| hypothetical protein PSPTO_3354 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213970047|ref|ZP_03398179.1| hypothetical protein PSPTOT1_5283 [Pseudomonas syringae pv. tomato
           T1]
 gi|301381402|ref|ZP_07229820.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           syringae pv. tomato Max13]
 gi|302058400|ref|ZP_07249941.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           syringae pv. tomato K40]
 gi|302130351|ref|ZP_07256341.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|37077076|sp|Q87ZS0|CLPS_PSESM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|28853766|gb|AAO56832.1| conserved protein of unknown function [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213925151|gb|EEB58714.1| hypothetical protein PSPTOT1_5283 [Pseudomonas syringae pv. tomato
           T1]
 gi|330965608|gb|EGH65868.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           syringae pv. actinidiae str. M302091]
 gi|331017259|gb|EGH97315.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 120

 Score = 87.4 bits (215), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 58/84 (69%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+L ND+YTPM+FV+ VL+ FF  + E A  +ML VH +G   CG++  +IA
Sbjct: 35  LQAPPMYKVVLFNDDYTPMDFVVEVLEVFFNLNRELATKVMLAVHTEGRAVCGLFTRDIA 94

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E K  QV  Y+R+ Q+PL C +E+
Sbjct: 95  ETKAAQVNQYARESQHPLLCEIEK 118


>gi|238020305|ref|ZP_04600731.1| hypothetical protein GCWU000324_00183 [Kingella oralis ATCC 51147]
 gi|237867285|gb|EEP68291.1| hypothetical protein GCWU000324_00183 [Kingella oralis ATCC 51147]
          Length = 101

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 59/96 (61%), Gaps = 2/96 (2%)

Query: 44  LDSEVRFSSKVRV--PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
           L    R S K ++  PK Y V L+ND+YTPM+FV+ VLQ+ F      A  IML+VHH G
Sbjct: 3   LHQATRQSQKTQLAPPKKYGVFLLNDHYTPMDFVVDVLQDVFRLPESKAVSIMLEVHHHG 62

Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            G CGVY  +IAE K  QVM  + +  +PL C +E+
Sbjct: 63  KGLCGVYTRDIAETKQQQVMQLADEAGHPLMCTIEE 98


>gi|242309928|ref|ZP_04809083.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
           pullorum MIT 98-5489]
 gi|239523225|gb|EEQ63091.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
           pullorum MIT 98-5489]
          Length = 101

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 57/81 (70%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           P  Y+V+L+ND+YT  +FVI VLQ  F+KD E +  +ML++HH G G CG+Y Y+IAE K
Sbjct: 20  PIRYKVILLNDDYTTQDFVIEVLQKVFHKDFEASLNLMLQIHHNGRGMCGIYPYDIAETK 79

Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
             +V   ++  Q+PL+ I+E+
Sbjct: 80  ALEVRKMAKAKQFPLRAILEK 100


>gi|194098152|ref|YP_002001200.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           gonorrhoeae NCCP11945]
 gi|291044246|ref|ZP_06569955.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
           gonorrhoeae DGI2]
 gi|293399443|ref|ZP_06643596.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           gonorrhoeae F62]
 gi|193933442|gb|ACF29266.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
           gonorrhoeae NCCP11945]
 gi|291011140|gb|EFE03136.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
           gonorrhoeae DGI2]
 gi|291610012|gb|EFF39134.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           gonorrhoeae F62]
 gi|317163877|gb|ADV07418.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           gonorrhoeae TCDC-NG08107]
          Length = 137

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 52/81 (64%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PK Y V L+ND+YT MEFV+ +L   F    E A  +ML VHH+G G CG Y  +IA+ K
Sbjct: 56  PKRYGVFLLNDDYTTMEFVVEILTEIFMLGQEQAVAVMLSVHHEGKGLCGTYTRDIAQTK 115

Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
             QVM  ++   +PLQCI+E+
Sbjct: 116 QQQVMQRAKAEGHPLQCIVEE 136


>gi|224372651|ref|YP_002607023.1| ATP-dependent Clp protease adaptor protein ClpS [Nautilia
           profundicola AmH]
 gi|254763821|sp|B9L8R5|CLPS_NAUPA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|223589176|gb|ACM92912.1| ATP-dependent Clp protease adaptor protein ClpS [Nautilia
           profundicola AmH]
          Length = 97

 Score = 87.0 bits (214), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 56/81 (69%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PKLY+V+L+ND+YT  +FVI +L+  F+K+ E A  I LKV  +G    GVY YEIA++K
Sbjct: 16  PKLYKVMLLNDDYTTFDFVIEILKTVFHKNEEEAINITLKVDREGSAAVGVYPYEIAQVK 75

Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
           + +    +RQ  YPL+ +ME+
Sbjct: 76  IEKTHTLARQAGYPLRAVMEE 96


>gi|313668693|ref|YP_004048977.1| atp-dependent Clp protease adaptor protein ClpS [Neisseria
           lactamica ST-640]
 gi|313006155|emb|CBN87616.1| atp-dependent Clp protease adaptor protein ClpS [Neisseria
           lactamica 020-06]
          Length = 128

 Score = 87.0 bits (214), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 53/81 (65%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PK Y V L+ND+YT MEFV+ +L   F    E A  +ML VHH+G G CG Y  +IA+ K
Sbjct: 47  PKRYGVFLLNDDYTTMEFVVEILTEIFMLGQEQAVAVMLLVHHEGKGLCGTYTRDIAQTK 106

Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
             QVM+ ++   +PLQCI+E+
Sbjct: 107 QRQVMDRAKAEGHPLQCIIEE 127


>gi|317487405|ref|ZP_07946193.1| ATP-dependent Clp protease adaptor protein ClpS [Bilophila
           wadsworthia 3_1_6]
 gi|316921337|gb|EFV42635.1| ATP-dependent Clp protease adaptor protein ClpS [Bilophila
           wadsworthia 3_1_6]
          Length = 108

 Score = 87.0 bits (214), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 61/92 (66%)

Query: 46  SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
            +V    +V  PK+Y+VLL ND+YT MEFV+++L   F+K  + A  IML VH +G G  
Sbjct: 14  PDVIMDVEVAEPKMYQVLLHNDDYTTMEFVVNILMTVFHKTADQATNIMLAVHKRGKGIA 73

Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           GVY +EIAE KV++    +R+  YPL+C +E+
Sbjct: 74  GVYPHEIAETKVDKTHFLAREAGYPLRCTLEE 105


>gi|70731245|ref|YP_260986.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           fluorescens Pf-5]
 gi|123654447|sp|Q4K9U7|CLPS_PSEF5 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|68345544|gb|AAY93150.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           fluorescens Pf-5]
          Length = 120

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 58/84 (69%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+L ND+YTPM+FV+ VL+ FF  + E A  +ML VH +G   CG++  +IA
Sbjct: 35  LQAPPMYKVVLFNDDYTPMDFVVEVLEMFFNLNRELATKVMLAVHTEGRAVCGLFTRDIA 94

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E K  QV  Y+R+ Q+PL C +E+
Sbjct: 95  ETKAMQVNQYARESQHPLLCEIEK 118


>gi|71735262|ref|YP_275268.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|257485425|ref|ZP_05639466.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|289625413|ref|ZP_06458367.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289649304|ref|ZP_06480647.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|298487537|ref|ZP_07005579.1| ATP-dependent Clp protease adaptor protein clpS [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|123635959|sp|Q48H65|CLPS_PSE14 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|71555815|gb|AAZ35026.1| ATP-dependent Clp protease adaptor protein clpS [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|298157921|gb|EFH98999.1| ATP-dependent Clp protease adaptor protein clpS [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|330866850|gb|EGH01559.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           syringae pv. aesculi str. 0893_23]
 gi|330889671|gb|EGH22332.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           syringae pv. mori str. 301020]
 gi|331010739|gb|EGH90795.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 120

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 58/84 (69%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+L ND+YTPM+FV+ VL+ FF  + E A  +ML VH +G   CG++  +IA
Sbjct: 35  LQAPPMYKVVLFNDDYTPMDFVVEVLEVFFNLNRELATKVMLAVHTEGRAVCGLFTRDIA 94

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E K  QV  Y+R+ Q+PL C +E+
Sbjct: 95  ETKAMQVNQYARESQHPLLCEIEK 118


>gi|89092941|ref|ZP_01165893.1| ATP-dependent Clp protease adaptor protein ClpS [Oceanospirillum
           sp. MED92]
 gi|89082966|gb|EAR62186.1| ATP-dependent Clp protease adaptor protein ClpS [Oceanospirillum
           sp. MED92]
          Length = 120

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 58/85 (68%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           +++ P +YRV+L+ND+YTPM+FV+ VL  FF  D E A  +ML VH QG G CG++  ++
Sbjct: 35  ELKKPSMYRVVLMNDDYTPMDFVVAVLMMFFSMDQEKATQVMLAVHTQGKGVCGIFTRDV 94

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           A+ K   V  Y+R + +PL C +E+
Sbjct: 95  ADTKAAIVNQYARDNSHPLLCEVEK 119


>gi|237800558|ref|ZP_04589019.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|330958173|gb|EGH58433.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           syringae pv. maculicola str. ES4326]
 gi|331023418|gb|EGI03475.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 120

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 58/84 (69%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+L ND+YTPM+FV+ VL+ FF  + E A  +ML VH +G   CG++  +IA
Sbjct: 35  LQAPPMYKVVLFNDDYTPMDFVVEVLEVFFNLNRELATKVMLAVHTEGRAVCGLFTRDIA 94

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E K  QV  Y+R+ Q+PL C +E+
Sbjct: 95  ETKAMQVNQYARESQHPLLCEIEK 118


>gi|218193695|gb|EEC76122.1| hypothetical protein OsI_13390 [Oryza sativa Indica Group]
          Length = 3986

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 54/76 (71%)

Query: 49   RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
            R + + + P++Y+V+++ND+YTPMEFVI VLQ FF KD E A  IMLK+H  G G CGVY
Sbjct: 3597 RRTQRTQPPQMYQVVMLNDDYTPMEFVIVVLQEFFGKDREAATQIMLKIHLDGKGVCGVY 3656

Query: 109  AYEIAEMKVNQVMNYS 124
            + ++A  KV Q +  S
Sbjct: 3657 SRDVAATKVEQELEVS 3672


>gi|66046413|ref|YP_236254.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           syringae pv. syringae B728a]
 gi|302185010|ref|ZP_07261683.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           syringae pv. syringae 642]
 gi|75501532|sp|Q4ZRK6|CLPS_PSEU2 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|63257120|gb|AAY38216.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           syringae pv. syringae B728a]
 gi|330972894|gb|EGH72960.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 120

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 58/84 (69%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+L ND+YTPM+FV+ VL+ FF  + E A  +ML VH +G   CG++  +IA
Sbjct: 35  LQAPPMYKVVLFNDDYTPMDFVVEVLEVFFNLNRELATKVMLAVHTEGRAVCGLFTRDIA 94

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E K  QV  Y+R+ Q+PL C +E+
Sbjct: 95  ETKAMQVNQYARESQHPLLCEIEK 118


>gi|330900612|gb|EGH32031.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           syringae pv. japonica str. M301072PT]
 gi|330940301|gb|EGH43421.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           syringae pv. pisi str. 1704B]
 gi|330981384|gb|EGH79487.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 120

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 58/84 (69%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+L ND+YTPM+FV+ VL+ FF  + E A  +ML VH +G   CG++  +IA
Sbjct: 35  LQAPPMYKVVLFNDDYTPMDFVVEVLEVFFNLNRELATKVMLAVHTEGRAVCGLFTRDIA 94

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E K  QV  Y+R+ Q+PL C +E+
Sbjct: 95  ETKAMQVNQYARESQHPLLCEIEK 118


>gi|255527633|ref|ZP_05394494.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
           carboxidivorans P7]
 gi|296185311|ref|ZP_06853721.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
           carboxidivorans P7]
 gi|255508675|gb|EET85054.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
           carboxidivorans P7]
 gi|296050145|gb|EFG89569.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
           carboxidivorans P7]
          Length = 99

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 57/86 (66%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           K+R PK+Y+V++ ND+YT MEFV+ +L   F K    A  IM  VH  GIG  G+Y+Y+I
Sbjct: 14  KIRKPKMYKVIIYNDDYTTMEFVVKILIEIFKKSVVEATKIMYDVHRSGIGIAGIYSYDI 73

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQK 138
           A  K+ Q M+ SR+  +PL+  +E++
Sbjct: 74  AATKITQAMSASRESGFPLKFSIEEE 99


>gi|327480905|gb|AEA84215.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           stutzeri DSM 4166]
          Length = 122

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 57/86 (66%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            +++ P +Y+V++ ND+YTPM+FV+ VL+  F    E A  IML VH +G   CGVY  +
Sbjct: 35  PQLKAPPMYKVVMFNDDYTPMDFVVEVLEGIFNHSREQATKIMLAVHTEGQAVCGVYTRD 94

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +AE K  QV  Y+R+ Q+PL C +E+
Sbjct: 95  VAETKAMQVNQYARECQHPLLCEIEK 120


>gi|239998603|ref|ZP_04718527.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           gonorrhoeae 35/02]
 gi|240013726|ref|ZP_04720639.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           gonorrhoeae DGI18]
 gi|240016164|ref|ZP_04722704.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           gonorrhoeae FA6140]
 gi|240080308|ref|ZP_04724851.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           gonorrhoeae FA19]
 gi|240112519|ref|ZP_04727009.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           gonorrhoeae MS11]
 gi|240115259|ref|ZP_04729321.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           gonorrhoeae PID18]
 gi|240117546|ref|ZP_04731608.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           gonorrhoeae PID1]
 gi|240120796|ref|ZP_04733758.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           gonorrhoeae PID24-1]
 gi|240123101|ref|ZP_04736057.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           gonorrhoeae PID332]
 gi|240125352|ref|ZP_04738238.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           gonorrhoeae SK-92-679]
 gi|240127805|ref|ZP_04740466.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           gonorrhoeae SK-93-1035]
 gi|254493323|ref|ZP_05106494.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
           gonorrhoeae 1291]
 gi|260440923|ref|ZP_05794739.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           gonorrhoeae DGI2]
 gi|268594461|ref|ZP_06128628.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
           gonorrhoeae 35/02]
 gi|268596457|ref|ZP_06130624.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
           gonorrhoeae FA19]
 gi|268598589|ref|ZP_06132756.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
           gonorrhoeae MS11]
 gi|268600942|ref|ZP_06135109.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
           gonorrhoeae PID18]
 gi|268603249|ref|ZP_06137416.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268681729|ref|ZP_06148591.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
           gonorrhoeae PID332]
 gi|268683956|ref|ZP_06150818.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
           gonorrhoeae SK-92-679]
 gi|268686201|ref|ZP_06153063.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
           gonorrhoeae SK-93-1035]
 gi|226512363|gb|EEH61708.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
           gonorrhoeae 1291]
 gi|268547850|gb|EEZ43268.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
           gonorrhoeae 35/02]
 gi|268550245|gb|EEZ45264.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
           gonorrhoeae FA19]
 gi|268582720|gb|EEZ47396.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
           gonorrhoeae MS11]
 gi|268585073|gb|EEZ49749.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
           gonorrhoeae PID18]
 gi|268587380|gb|EEZ52056.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268622013|gb|EEZ54413.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
           gonorrhoeae PID332]
 gi|268624240|gb|EEZ56640.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
           gonorrhoeae SK-92-679]
 gi|268626485|gb|EEZ58885.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
           gonorrhoeae SK-93-1035]
          Length = 112

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 52/81 (64%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PK Y V L+ND+YT MEFV+ +L   F    E A  +ML VHH+G G CG Y  +IA+ K
Sbjct: 31  PKRYGVFLLNDDYTTMEFVVEILTEIFMLGQEQAVAVMLSVHHEGKGLCGTYTRDIAQTK 90

Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
             QVM  ++   +PLQCI+E+
Sbjct: 91  QQQVMQRAKAEGHPLQCIVEE 111


>gi|120554676|ref|YP_959027.1| ATP-dependent Clp protease adaptor protein ClpS [Marinobacter
           aquaeolei VT8]
 gi|158513045|sp|A1U1H1|CLPS_MARAV RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|120324525|gb|ABM18840.1| ATP-dependent Clp protease adaptor protein ClpS [Marinobacter
           aquaeolei VT8]
          Length = 119

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 54/81 (66%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           P  YRV+L+ND+YTPM+FV+ VL  FF  + E A  +ML VH QG   CGVY  +IAE K
Sbjct: 37  PARYRVVLLNDDYTPMDFVVDVLMKFFAMNEEKATQVMLLVHTQGKAVCGVYTRDIAETK 96

Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
             QV  YS + ++PL C +E+
Sbjct: 97  AAQVNQYSSECEHPLLCEIER 117


>gi|226944902|ref|YP_002799975.1| ATP-dependent Clp protease adaptor protein ClpS [Azotobacter
           vinelandii DJ]
 gi|259491243|sp|C1DKZ8|CLPS_AZOVD RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|226719829|gb|ACO79000.1| ATP-dependent clp protease adaptor protein, ClpS [Azotobacter
           vinelandii DJ]
          Length = 120

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 59/84 (70%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++VP +Y+V++ ND+YTPM+FV+ VL+ FF  + E A  +ML VH +G   CG++  ++A
Sbjct: 35  LKVPPMYKVVMFNDDYTPMDFVVEVLEKFFNLNRELATKVMLTVHTEGRAVCGMFTRDVA 94

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E K  QV  Y+R+ Q+PL C +E+
Sbjct: 95  ETKAMQVNQYARECQHPLLCEIEK 118


>gi|59800852|ref|YP_207564.1| hypothetical protein NGO0409 [Neisseria gonorrhoeae FA 1090]
 gi|67460149|sp|Q5F9I5|CLPS_NEIG1 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|59717747|gb|AAW89152.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
          Length = 100

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 52/81 (64%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PK Y V L+ND+YT MEFV+ +L   F    E A  +ML VHH+G G CG Y  +IA+ K
Sbjct: 19  PKRYGVFLLNDDYTTMEFVVEILTEIFMLGQEQAVAVMLSVHHEGKGLCGTYTRDIAQTK 78

Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
             QVM  ++   +PLQCI+E+
Sbjct: 79  QQQVMQRAKAEGHPLQCIVEE 99


>gi|57167994|ref|ZP_00367133.1| Uncharacterized ACR, COG2127 [Campylobacter coli RM2228]
 gi|305431855|ref|ZP_07401022.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter coli
           JV20]
 gi|57020368|gb|EAL57037.1| Uncharacterized ACR, COG2127 [Campylobacter coli RM2228]
 gi|304444939|gb|EFM37585.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter coli
           JV20]
          Length = 96

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/87 (47%), Positives = 60/87 (68%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           SK++ PK+++V+L+ND+ T M+FVI VL N FY D ETA  IML+VH  G G CG+Y  E
Sbjct: 10  SKLKEPKMFKVILLNDDVTTMDFVIEVLINIFYHDFETANKIMLEVHLNGSGICGIYTQE 69

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IA  K  +V + ++   +PLQ  +E++
Sbjct: 70  IALSKQKKVSDAAKLANFPLQTRVEEE 96


>gi|34556771|ref|NP_906586.1| hypothetical protein WS0336 [Wolinella succinogenes DSM 1740]
 gi|39930938|sp|Q7MSL3|CLPS_WOLSU RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|34482485|emb|CAE09486.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 102

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 65/94 (69%)

Query: 44  LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIG 103
            ++E++    V  P+ ++V+L+ND+Y+ M+FV+ VL   F K+ + A  +MLKVH++G G
Sbjct: 8   FETEIKEEIIVAEPRRFKVILLNDDYSTMDFVVEVLMVIFNKNFDEALGVMLKVHNEGRG 67

Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            CG+Y Y++AE KV+QV   + +  +PL+ I+E+
Sbjct: 68  VCGIYPYDVAETKVSQVKKKAEESGFPLRAILEE 101


>gi|289679172|ref|ZP_06500062.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           syringae pv. syringae FF5]
          Length = 94

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 58/84 (69%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+L ND+YTPM+FV+ VL+ FF  + E A  +ML VH +G   CG++  +IA
Sbjct: 9   LQAPPMYKVVLFNDDYTPMDFVVEVLEVFFNLNRELATKVMLAVHTEGRAVCGLFTRDIA 68

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E K  QV  Y+R+ Q+PL C +E+
Sbjct: 69  ETKAMQVNQYARESQHPLLCEIEK 92


>gi|146282647|ref|YP_001172800.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           stutzeri A1501]
 gi|145570852|gb|ABP79958.1| ATP-dependent Clp protease adaptor protein clpS [Pseudomonas
           stutzeri A1501]
          Length = 167

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 57/86 (66%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            +++ P +Y+V++ ND+YTPM+FV+ VL+  F    E A  IML VH +G   CGVY  +
Sbjct: 80  PQLKAPPMYKVVMFNDDYTPMDFVVEVLEGIFNHSREQATKIMLAVHTEGQAVCGVYTRD 139

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +AE K  QV  Y+R+ Q+PL C +E+
Sbjct: 140 VAETKAMQVNQYARECQHPLLCEIEK 165


>gi|149376383|ref|ZP_01894146.1| ATP-dependent Clp protease adaptor protein ClpS [Marinobacter
           algicola DG893]
 gi|149359397|gb|EDM47858.1| ATP-dependent Clp protease adaptor protein ClpS [Marinobacter
           algicola DG893]
          Length = 119

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 56/84 (66%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P  +RVLL+ND+YTPM+FV+ VL  FF  + E A  +ML VH QG   CGVY  +IA
Sbjct: 34  LKRPARFRVLLLNDDYTPMDFVVDVLMKFFGMNEEKATQVMLLVHTQGKAVCGVYTRDIA 93

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E K  QV  YS + ++PL C +E+
Sbjct: 94  ETKAAQVNQYSSECEHPLLCEIER 117


>gi|82523955|emb|CAI78766.1| ATP-dependent Clp protease adaptor protein ClpS [uncultured epsilon
           proteobacterium]
          Length = 99

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 57/82 (69%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PK Y+V ++ND+YT M+FV+ VL   F+K +E ++ IML+VH +  G CGVY +EIAE K
Sbjct: 18  PKKYKVFILNDDYTSMDFVVDVLMTIFHKSYEESEAIMLEVHKKDRGLCGVYTHEIAETK 77

Query: 117 VNQVMNYSRQHQYPLQCIMEQK 138
           V QV   +R   +PL+  ME++
Sbjct: 78  VMQVHKKARDSGFPLKSTMEEE 99


>gi|330987929|gb|EGH86032.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 120

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 57/84 (67%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+L ND+YTPM+FV+ VL+ FF  + E A  +ML VH +G   CG++  +IA
Sbjct: 35  LQAPPMYKVVLFNDDYTPMDFVVEVLEVFFNLNRELATKVMLAVHTEGRAVCGLFTRDIA 94

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E K  QV  Y+R+ Q+PL C  E+
Sbjct: 95  ETKAMQVNQYARESQHPLLCETEK 118


>gi|316984242|gb|EFV63218.1| ATP-dependent Clp protease adaptor ClpS family protein [Neisseria
           meningitidis H44/76]
          Length = 183

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 52/81 (64%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PK Y V L+ND+YT MEFV+ +L   F    E A  +ML VHH+G G CG Y  +IA+ K
Sbjct: 102 PKRYGVFLLNDDYTTMEFVVEILTEIFMLGQEQAVAVMLLVHHEGKGLCGTYTRDIAQTK 161

Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
             QVM  ++   +PLQCI+E+
Sbjct: 162 QQQVMQRAKAEGHPLQCIVEE 182


>gi|296315334|ref|ZP_06865275.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           polysaccharea ATCC 43768]
 gi|296837710|gb|EFH21648.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           polysaccharea ATCC 43768]
          Length = 100

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/96 (42%), Positives = 56/96 (58%)

Query: 42  NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
           +C    +    K   PK Y V L+ND+YT MEFV+ +L   F    E A  +ML VHH+G
Sbjct: 4   HCQSDTLLSDLKTLPPKRYGVFLLNDDYTTMEFVVEILTEIFMLGQEQAVAVMLLVHHEG 63

Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            G CG Y  +IA+ K  QVM  ++   +PLQCI+E+
Sbjct: 64  KGLCGTYTRDIAQTKQQQVMQRAKAEGHPLQCIVEE 99


>gi|291277520|ref|YP_003517292.1| putative ATP-dependent Clp protease adapter protein ClpS
           [Helicobacter mustelae 12198]
 gi|290964714|emb|CBG40569.1| putative ATP-dependent Clp protease adapter protein, ClpS
           [Helicobacter mustelae 12198]
          Length = 100

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 57/81 (70%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           +K+  P +  V+++ND+YTPM+FVI++L + F K+ + A  IML+VHH+G G CG+Y Y+
Sbjct: 14  TKISEPIMASVIILNDDYTPMDFVINILMSVFEKNQDQATQIMLEVHHKGSGVCGIYPYD 73

Query: 112 IAEMKVNQVMNYSRQHQYPLQ 132
           IAE+K+      ++  Q PLQ
Sbjct: 74  IAELKLQIAREKTKTAQLPLQ 94


>gi|330954576|gb|EGH54836.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           syringae Cit 7]
          Length = 120

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 58/84 (69%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+L ND+YTPM+FV+ VL+ FF  + E A  +ML VH +G   CG++  +IA
Sbjct: 35  LQAPPMYKVVLFNDDYTPMDFVVEVLEVFFNLNRELATKVMLAVHTEGRAVCGLFTRDIA 94

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E K  QV  Y+R+ Q+PL C +E+
Sbjct: 95  ETKAMQVNQYAREGQHPLLCEIEK 118


>gi|261400156|ref|ZP_05986281.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           lactamica ATCC 23970]
 gi|269210155|gb|EEZ76610.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           lactamica ATCC 23970]
          Length = 112

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 53/81 (65%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PK Y V L+ND+YT MEFV+ +L   F    E A  +ML VHH+G G CG Y  +IA+ K
Sbjct: 31  PKRYGVFLLNDDYTTMEFVVEILTEIFMLGQEQAVAVMLLVHHEGKGLCGTYTRDIAQTK 90

Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
             QVM+ ++   +PLQCI+E+
Sbjct: 91  QRQVMDMAKAEGHPLQCIVEE 111


>gi|309379405|emb|CBX21972.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 100

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 53/81 (65%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PK Y V L+ND+YT MEFV+ +L   F    E A  +ML VHH+G G CG Y  +IA+ K
Sbjct: 19  PKRYGVFLLNDDYTTMEFVVEILTEIFMLGQEQAVAVMLLVHHEGKGLCGTYTRDIAQTK 78

Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
             QVM+ ++   +PLQCI+E+
Sbjct: 79  QRQVMDRAKAEGHPLQCIVEE 99


>gi|254458761|ref|ZP_05072185.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacterales
           bacterium GD 1]
 gi|207084527|gb|EDZ61815.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacterales
           bacterium GD 1]
          Length = 99

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 63/94 (67%)

Query: 45  DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
           D E+    K++ PK Y+V L+ND+YT M+FVI +L   F+K +  A+ IML +H +  G 
Sbjct: 6   DLELYNEVKLKHPKKYKVFLLNDDYTSMDFVIDILITIFHKSYSQAESIMLDIHKKERGL 65

Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           CGVY +EIAE KV QV   ++ + +PL+ +ME++
Sbjct: 66  CGVYTHEIAETKVMQVRRKAKDNGFPLKAMMEEE 99


>gi|255065179|ref|ZP_05317034.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria sicca
           ATCC 29256]
 gi|255050600|gb|EET46064.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria sicca
           ATCC 29256]
          Length = 103

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 53/85 (62%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           K   PK Y V L+ND+YT MEFV+ +L   F    E A  +ML VHH+G G CG Y  +I
Sbjct: 18  KTAPPKRYGVFLLNDDYTTMEFVVEILTEIFMLGQEQAVAVMLLVHHEGKGLCGTYTRDI 77

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           A+ K  QVM  ++   +PLQCI+E+
Sbjct: 78  AQTKQQQVMQRAKAEGHPLQCIVEE 102


>gi|261364236|ref|ZP_05977119.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria mucosa
           ATCC 25996]
 gi|288567473|gb|EFC89033.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria mucosa
           ATCC 25996]
          Length = 103

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 53/85 (62%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           K   PK Y V L+ND+YT MEFV+ +L   F    E A  +ML VHH+G G CG Y  +I
Sbjct: 18  KTAPPKRYGVFLLNDDYTTMEFVVEILTEIFMLGEEQAVAVMLLVHHEGKGLCGTYTRDI 77

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           A+ K  QVM  ++   +PLQCI+E+
Sbjct: 78  AQTKQQQVMQRAKAEGHPLQCIVEE 102


>gi|304387855|ref|ZP_07370029.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           meningitidis ATCC 13091]
 gi|304338120|gb|EFM04256.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           meningitidis ATCC 13091]
          Length = 112

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 52/81 (64%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PK Y V L+ND+YT MEFV+ +L   F    E A  +ML VHH+G G CG Y  +IA+ K
Sbjct: 31  PKRYGVFLLNDDYTTMEFVVEILTEIFMLGQEQAVAVMLLVHHEGKGLCGTYTRDIAQTK 90

Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
             QVM  ++   +PLQCI+E+
Sbjct: 91  QQQVMQRAKAEGHPLQCIVEE 111


>gi|197121252|ref|YP_002133203.1| ATP-dependent Clp protease adaptor protein ClpS [Anaeromyxobacter
           sp. K]
 gi|220915956|ref|YP_002491260.1| ATP-dependent Clp protease adaptor protein ClpS [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|196171101|gb|ACG72074.1| ATP-dependent Clp protease adaptor protein ClpS [Anaeromyxobacter
           sp. K]
 gi|219953810|gb|ACL64194.1| ATP-dependent Clp protease adaptor protein ClpS [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 108

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/99 (45%), Positives = 59/99 (59%), Gaps = 5/99 (5%)

Query: 45  DSEV-----RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
           D+EV     R   + + P LYRVLL ND+YT  EFV  VL   F  D E+A  IML VH 
Sbjct: 10  DTEVVVPKTRAERETKRPPLYRVLLHNDHYTTQEFVDFVLMTVFNHDPESAHRIMLHVHM 69

Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            G+G  G+Y YEIAE K  + M+ +R+ +YPL   +E +
Sbjct: 70  HGVGVAGIYPYEIAETKARKTMDLAREAEYPLLVTIEPE 108


>gi|161869772|ref|YP_001598940.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           meningitidis 053442]
 gi|161595325|gb|ABX72985.1| conserved hypothetical protein [Neisseria meningitidis 053442]
          Length = 153

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 52/81 (64%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PK Y V L+ND+YT MEFV+ +L   F    E A  +ML VHH+G G CG Y  +IA+ K
Sbjct: 72  PKRYGVFLLNDDYTTMEFVVEILTEIFMLGQEQAVAVMLLVHHEGKGLCGTYTRDIAQTK 131

Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
             QVM  ++   +PLQCI+E+
Sbjct: 132 QQQVMQRAKAEGHPLQCIVEE 152


>gi|254804708|ref|YP_003082929.1| putative ATP-dependent Clp protease adaptor protein [Neisseria
           meningitidis alpha14]
 gi|254668250|emb|CBA05092.1| putative ATP-dependent Clp protease adaptor protein [Neisseria
           meningitidis alpha14]
 gi|308389011|gb|ADO31331.1| putative ATP-dependent Clp protease adaptor protein clpS [Neisseria
           meningitidis alpha710]
 gi|325127944|gb|EGC50846.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           meningitidis N1568]
 gi|325129979|gb|EGC52775.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           meningitidis OX99.30304]
          Length = 100

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 52/81 (64%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PK Y V L+ND+YT MEFV+ +L   F    E A  +ML VHH+G G CG Y  +IA+ K
Sbjct: 19  PKRYGVFLLNDDYTTMEFVVEILTEIFMLGQEQAVAVMLLVHHEGKGLCGTYTRDIAQTK 78

Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
             QVM  ++   +PLQCI+E+
Sbjct: 79  QQQVMQRAKAEGHPLQCIVEE 99


>gi|126667265|ref|ZP_01738238.1| ATP-dependent Clp protease adaptor protein ClpS [Marinobacter sp.
           ELB17]
 gi|126628210|gb|EAZ98834.1| ATP-dependent Clp protease adaptor protein ClpS [Marinobacter sp.
           ELB17]
          Length = 117

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 57/84 (67%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P  +RV+L+ND+YTPM+FV+ VL  FF  + E A  +ML VH QG   CGVY+ +IA
Sbjct: 32  LKRPAQFRVILLNDDYTPMDFVVEVLTTFFGMNEEKATQVMLLVHTQGKAVCGVYSRDIA 91

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E K  QV +YS +  +PL C +E+
Sbjct: 92  ETKAAQVNHYSSECDHPLLCEIER 115


>gi|261377437|ref|ZP_05982010.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria cinerea
           ATCC 14685]
 gi|269146155|gb|EEZ72573.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria cinerea
           ATCC 14685]
          Length = 100

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 52/81 (64%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PK Y V L+ND+YT MEFV+ +L   F    E A  +ML VHH+G G CG Y  +IA+ K
Sbjct: 19  PKRYGVFLLNDDYTTMEFVVEILTEIFMLGQEQAVAVMLLVHHEGKGLCGTYTRDIAQTK 78

Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
             QVM  ++   +PLQCI+E+
Sbjct: 79  QQQVMQRAKAEGHPLQCIVEE 99


>gi|313683054|ref|YP_004060792.1| ATP-dependent clp protease adaptor protein clps [Sulfuricurvum
           kujiense DSM 16994]
 gi|313155914|gb|ADR34592.1| ATP-dependent Clp protease adaptor protein ClpS [Sulfuricurvum
           kujiense DSM 16994]
          Length = 99

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 56/81 (69%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PK Y V L+ND+YT M+FV+ +L   F K+   A  IM++VH  G G CGVY YE+AE K
Sbjct: 18  PKQYNVFLLNDDYTSMDFVVDILMKLFRKNFHDAHRIMIEVHQNGRGLCGVYPYEVAETK 77

Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
           V+QV   +R++ +PL+ IME+
Sbjct: 78  VHQVSILARENGFPLKAIMEE 98


>gi|119476169|ref|ZP_01616521.1| ATP-dependent Clp protease adaptor protein ClpS [marine gamma
           proteobacterium HTCC2143]
 gi|119450796|gb|EAW32030.1| ATP-dependent Clp protease adaptor protein ClpS [marine gamma
           proteobacterium HTCC2143]
          Length = 124

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 55/89 (61%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
                 ++ P +Y+V+L+ND+YTPMEFV+ +L+ FF    E A  +ML VH  G G CG+
Sbjct: 32  AELKPALKRPPMYKVVLLNDDYTPMEFVVEILETFFSMGREQATQVMLAVHTHGKGVCGL 91

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
           +  ++AE K  QV  Y+R+  +PL   +E
Sbjct: 92  FTRDVAETKAAQVNQYARESHHPLLAEVE 120


>gi|108758335|ref|YP_634160.1| ATP-dependent Clp protease adaptor protein ClpS [Myxococcus xanthus
           DK 1622]
 gi|122387659|sp|Q1CZL3|CLPS_MYXXD RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|108462215|gb|ABF87400.1| ATP-dependent Clp protease adaptor protein ClpS [Myxococcus xanthus
           DK 1622]
          Length = 107

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/98 (42%), Positives = 60/98 (61%)

Query: 39  EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           E D  + +E     K++ P LY+VLL NDNYT  EFV+ VL+  F+K    A  IML VH
Sbjct: 6   EHDTSVITESAPKQKLKKPPLYKVLLHNDNYTTREFVVAVLKEVFHKSETDAVQIMLHVH 65

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
           + G+G  GVY Y++AE K+  V   ++++  PL+  ME
Sbjct: 66  YNGVGVAGVYTYDVAETKIQTVEAAAQENDMPLRLSME 103


>gi|15676733|ref|NP_273878.1| hypothetical protein NMB0837 [Neisseria meningitidis MC58]
 gi|121634615|ref|YP_974860.1| hypothetical protein NMC0775 [Neisseria meningitidis FAM18]
 gi|12230808|sp|Q9JZZ5|CLPS_NEIMB RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|7226071|gb|AAF41248.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|120866321|emb|CAM10062.1| putative ATP-dependent Clp protease adaptor protein clpS [Neisseria
           meningitidis FAM18]
 gi|254670466|emb|CBA06136.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
 gi|254672383|emb|CBA05650.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
 gi|261392811|emb|CAX50392.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           meningitidis 8013]
 gi|319410196|emb|CBY90534.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
           meningitidis WUE 2594]
 gi|325132022|gb|EGC54720.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           meningitidis M6190]
 gi|325134027|gb|EGC56682.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           meningitidis M13399]
 gi|325135948|gb|EGC58558.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           meningitidis M0579]
 gi|325137776|gb|EGC60351.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           meningitidis ES14902]
 gi|325140015|gb|EGC62544.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           meningitidis CU385]
 gi|325144133|gb|EGC66440.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           meningitidis M01-240013]
 gi|325198040|gb|ADY93496.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           meningitidis G2136]
 gi|325200483|gb|ADY95938.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           meningitidis H44/76]
 gi|325202375|gb|ADY97829.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           meningitidis M01-240149]
 gi|325203908|gb|ADY99361.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           meningitidis M01-240355]
 gi|325206329|gb|ADZ01782.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           meningitidis M04-240196]
 gi|325207873|gb|ADZ03325.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           meningitidis NZ-05/33]
          Length = 100

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 52/81 (64%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PK Y V L+ND+YT MEFV+ +L   F    E A  +ML VHH+G G CG Y  +IA+ K
Sbjct: 19  PKRYGVFLLNDDYTTMEFVVEILTEIFMLGQEQAVAVMLLVHHEGKGLCGTYTRDIAQTK 78

Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
             QVM  ++   +PLQCI+E+
Sbjct: 79  QQQVMQRAKAEGHPLQCIVEE 99


>gi|298368623|ref|ZP_06979941.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298282626|gb|EFI24113.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 123

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 63/113 (55%), Gaps = 4/113 (3%)

Query: 26  FMADSRMNKKGIA-EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFY 84
           F    +MN+   + E D  L+   R   K   PK Y V L+ND+YT M+FV+ VL   F 
Sbjct: 13  FRTTYKMNRPNTSHESDTLLNENDR---KTAPPKRYGVFLLNDDYTTMDFVVEVLSEVFM 69

Query: 85  KDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
              E A  +ML VHH+G G CG Y  +IA+ K  QVM  ++   +PLQC +E+
Sbjct: 70  LGEEQAVAVMLLVHHEGKGLCGTYTRDIAQTKQLQVMQRAKAAGHPLQCTVEE 122


>gi|92114559|ref|YP_574487.1| ATP-dependent Clp protease adaptor protein ClpS [Chromohalobacter
           salexigens DSM 3043]
 gi|91797649|gb|ABE59788.1| ATP-dependent Clp protease adaptor protein ClpS [Chromohalobacter
           salexigens DSM 3043]
          Length = 131

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/77 (49%), Positives = 54/77 (70%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           P +Y+V+L ND++TPMEFV+ VLQ+FF  + E A  +ML VH  G   CG++  +IAE K
Sbjct: 49  PPMYKVVLHNDDFTPMEFVVEVLQSFFAMEREKAVQVMLVVHTHGKATCGIFTRDIAETK 108

Query: 117 VNQVMNYSRQHQYPLQC 133
            +QV  Y+R+ Q+PL C
Sbjct: 109 CHQVNEYARECQHPLLC 125


>gi|313498102|gb|ADR59468.1| ClpS [Pseudomonas putida BIRD-1]
          Length = 81

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 55/79 (69%)

Query: 59  LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
           +Y+V+L ND+YTPM+FV+ VL+ FF  + E A  IML VH +G   CG++  +IAE K  
Sbjct: 1   MYKVVLFNDDYTPMDFVVEVLETFFSLNRELATKIMLTVHTEGRAVCGLFTRDIAETKAM 60

Query: 119 QVMNYSRQHQYPLQCIMEQ 137
           QV  Y+R+ Q+PL C +E+
Sbjct: 61  QVNQYARESQHPLLCEIEK 79


>gi|42527626|ref|NP_972724.1| hypothetical protein TDE2123 [Treponema denticola ATCC 35405]
 gi|67460342|sp|Q73KU4|CLPS_TREDE RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|41818454|gb|AAS12643.1| conserved hypothetical protein [Treponema denticola ATCC 35405]
 gi|325474421|gb|EGC77608.1| ATP-dependent Clp protease adaptor protein ClpS [Treponema
           denticola F0402]
          Length = 101

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 57/87 (65%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
           S K   P+ YRV+L+ND++TPM+FV+ VL + F K  E A+ +M KVH  G    G+Y Y
Sbjct: 14  SEKFIEPENYRVILLNDDFTPMDFVVAVLISIFNKSQEEAETLMFKVHKTGQASVGIYVY 73

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +IA  K  QV+  ++ + +PLQC +E+
Sbjct: 74  DIATTKCFQVLTAAKNNNFPLQCKVEK 100


>gi|152993643|ref|YP_001359364.1| ATP-dependent Clp protease, adaptor protein ClpS [Sulfurovum sp.
           NBC37-1]
 gi|151425504|dbj|BAF73007.1| ATP-dependent Clp protease, adaptor protein ClpS [Sulfurovum sp.
           NBC37-1]
          Length = 99

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 58/81 (71%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           P++Y+VLL ND+YT M+FV+ VL + F+K  E A  IML++H +G   CGVY++EIA+ K
Sbjct: 17  PQMYKVLLHNDDYTSMDFVVEVLTSIFHKTQEQAVQIMLQIHEKGKAICGVYSFEIAQTK 76

Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
             QV   ++++++PL   +E+
Sbjct: 77  AEQVKQLAKKNEFPLLATIEE 97


>gi|149198609|ref|ZP_01875653.1| ATP-dependent Clp protease adaptor protein ClpS [Lentisphaera
           araneosa HTCC2155]
 gi|149138324|gb|EDM26733.1| ATP-dependent Clp protease adaptor protein ClpS [Lentisphaera
           araneosa HTCC2155]
          Length = 103

 Score = 84.7 bits (208), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 64/94 (68%)

Query: 45  DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
           D+ +    KV+ P  ++V+L ND+YTPM+FV++++ + F+K  + A  +ML VH +G   
Sbjct: 10  DAALLEKRKVKRPSRFKVILHNDDYTPMDFVVYLIMSVFHKTEDEAAQLMLTVHVKGKAI 69

Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           CG+Y  EIAE KV++ M+ ++Q  +PL C M+++
Sbjct: 70  CGIYPKEIAENKVDKAMSMAKQEGHPLLCTMQKE 103


>gi|57237989|ref|YP_179238.1| hypothetical protein CJE1250 [Campylobacter jejuni RM1221]
 gi|86150412|ref|ZP_01068638.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88596781|ref|ZP_01100018.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218562721|ref|YP_002344500.1| ATP-dependent Clp protease adaptor protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|12230833|sp|Q9PNI7|CLPS_CAMJE RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|67460170|sp|Q5HTZ7|CLPS_CAMJR RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|57166793|gb|AAW35572.1| conserved hypothetical protein [Campylobacter jejuni RM1221]
 gi|85839237|gb|EAQ56500.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88191622|gb|EAQ95594.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112360427|emb|CAL35224.1| ATP-dependent Clp protease adaptor protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|284926336|gb|ADC28688.1| ATP-dependent Clp protease adaptor protein [Campylobacter jejuni
           subsp. jejuni IA3902]
 gi|315058548|gb|ADT72877.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
           jejuni subsp. jejuni S3]
          Length = 96

 Score = 84.7 bits (208), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 60/87 (68%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           +K+  PK+Y+V+L+ND+ T M+FVI +L N F+++ E A   ML++HH G G CG+Y  E
Sbjct: 10  TKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQNLEKASQTMLEIHHNGSGICGIYTQE 69

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IA  K  +VM+ ++   +PLQ  +E++
Sbjct: 70  IALSKQKKVMDAAKLANFPLQAKVEEE 96


>gi|303249375|ref|ZP_07335601.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
           fructosovorans JJ]
 gi|302489213|gb|EFL49178.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
           fructosovorans JJ]
          Length = 104

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 55/78 (70%)

Query: 60  YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQ 119
           Y+VLL ND+YT MEFVI VL   F+K+   A  IML VH+ G+G CG Y  E+AE+KV+ 
Sbjct: 26  YKVLLHNDDYTTMEFVIQVLVGVFHKNENEATQIMLNVHNNGVGVCGEYTAEVAELKVSL 85

Query: 120 VMNYSRQHQYPLQCIMEQ 137
           V   ++++ YPL+C ME+
Sbjct: 86  VHRLAKENGYPLKCSMEE 103


>gi|218779933|ref|YP_002431251.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfatibacillum
           alkenivorans AK-01]
 gi|259491244|sp|B8FGA3|CLPS_DESAA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|218761317|gb|ACL03783.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfatibacillum
           alkenivorans AK-01]
          Length = 104

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 57/88 (64%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
           + K   P++++VLL ND+YT MEFV+ VLQ  F K    A  IML VH++G+G  GVY  
Sbjct: 17  TQKTERPRMFKVLLHNDDYTTMEFVVGVLQRVFNKSVPEATRIMLNVHNRGVGVAGVYTA 76

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           E+AE K+  V + ++   +PL+C ME +
Sbjct: 77  EVAETKIETVHSMAQADGFPLKCSMEPE 104


>gi|86157217|ref|YP_464002.1| ATP-dependent Clp protease adaptor protein ClpS [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773728|gb|ABC80565.1| ATP-dependent Clp protease adaptor protein ClpS [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 108

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 57/93 (61%)

Query: 46  SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
            + R   + + P LY+VLL ND+YT  EFV +VL   F  D E+A  IML VH  G+G  
Sbjct: 16  PKTRAERETKRPPLYKVLLHNDHYTTQEFVDYVLMTVFNHDPESAHRIMLHVHMHGVGVA 75

Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           G+Y YEIAE K  + ++ +R+ +YPL   +E +
Sbjct: 76  GIYPYEIAETKARKTLDLAREAEYPLLVTIEPE 108


>gi|95930477|ref|ZP_01313213.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133517|gb|EAT15180.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfuromonas
           acetoxidans DSM 684]
          Length = 103

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 56/93 (60%)

Query: 45  DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
           + EV    +   P  Y V++ ND+YT MEFV+ VL+N + K    A  IML +HH+G+  
Sbjct: 10  EGEVLSKEQTARPPRYNVIMHNDDYTTMEFVVEVLENIYRKQPAEATRIMLAIHHEGLAV 69

Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           CG Y +EIAE KV Q    +R   +PL+C +E+
Sbjct: 70  CGNYPFEIAETKVEQTHRRARSAGHPLRCSIEE 102


>gi|153952414|ref|YP_001397780.1| hypothetical protein JJD26997_0615 [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|166214731|sp|A7H2Q0|CLPS_CAMJD RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|152939860|gb|ABS44601.1| conserved hypothetical protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 96

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 63/95 (66%)

Query: 44  LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIG 103
           L ++    +K+  PK+Y+V+L+ND+ T M+FVI +L N F+++ E A   ML++HH G G
Sbjct: 2   LKTQTLEQTKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQNLEKASQTMLEIHHNGSG 61

Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            CG+Y  EIA  K  +V++ ++   +PLQ  +E++
Sbjct: 62  ICGIYTQEIALSKQKKVIDAAKLANFPLQAKVEEE 96


>gi|86150870|ref|ZP_01069086.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85842040|gb|EAQ59286.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           260.94]
          Length = 96

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 60/87 (68%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           +K+  PK+Y+V+L+ND+ T M+FVI +L N F+++ E A   MLK+HH G G CG+Y  E
Sbjct: 10  TKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQNLEKASQTMLKIHHNGSGICGIYTQE 69

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IA  K  +V++ ++   +PLQ  +E++
Sbjct: 70  IALSKQKKVIDAAKLANFPLQVKVEEE 96


>gi|221067305|ref|ZP_03543410.1| ATP-dependent Clp protease adaptor protein ClpS [Comamonas
           testosteroni KF-1]
 gi|220712328|gb|EED67696.1| ATP-dependent Clp protease adaptor protein ClpS [Comamonas
           testosteroni KF-1]
          Length = 76

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 51/73 (69%)

Query: 64  LVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNY 123
           ++ND++TPMEFVI VLQ  F KD E+A  IMLK+H  G G CGVY+ ++A  KV QV+  
Sbjct: 1   MLNDDFTPMEFVIAVLQELFGKDRESATQIMLKIHLDGRGVCGVYSQDVAATKVEQVLQA 60

Query: 124 SRQHQYPLQCIME 136
           +++  +PLQ   E
Sbjct: 61  AQKAGHPLQATFE 73


>gi|157738129|ref|YP_001490813.1| ATP-dependent Clp protease adaptor protein ClpS [Arcobacter
           butzleri RM4018]
 gi|315636272|ref|ZP_07891522.1| ATP-dependent Clp protease adaptor protein ClpS [Arcobacter
           butzleri JV22]
 gi|157699983|gb|ABV68143.1| ATP-dependent Clp protease adaptor protein ClpS [Arcobacter
           butzleri RM4018]
 gi|315479361|gb|EFU70044.1| ATP-dependent Clp protease adaptor protein ClpS [Arcobacter
           butzleri JV22]
          Length = 99

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 61/97 (62%)

Query: 42  NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
           N ++ E+     ++ PK Y V L+ND+Y+ M+FVI VL   F K  + A  IML +H+ G
Sbjct: 3   NEIEVELNDELDLQEPKKYNVFLLNDDYSTMDFVIDVLVKIFRKSTQDATEIMLNIHNNG 62

Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            G CG+Y +EIA  KV QV   +R+  +PL+ +ME++
Sbjct: 63  KGLCGIYTHEIALTKVMQVKTMAREKGFPLKAVMEEE 99


>gi|315929892|gb|EFV09052.1| ATP-dependent Clp protease adaptor protein ClpS family protein
           [Campylobacter jejuni subsp. jejuni 305]
          Length = 96

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 60/87 (68%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           +K+  PK+Y+V+L+ND+ T M+FVI +L N F+++ E A   ML++HH G G CG+Y  E
Sbjct: 10  TKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQNPEKASQTMLEIHHNGSGICGIYTQE 69

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IA  K  +V++ ++   +PLQ  +E++
Sbjct: 70  IALSKQKKVIDAAKLANFPLQAKVEEE 96


>gi|261381146|ref|ZP_05985719.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria subflava
           NJ9703]
 gi|284795952|gb|EFC51299.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria subflava
           NJ9703]
          Length = 103

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 53/81 (65%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PK Y V L+ND+YT MEFV+ +L   F    E A  +ML VHH+G G CG Y  +IA+ K
Sbjct: 22  PKRYGVFLLNDDYTTMEFVVEILTEVFMLTQEQAVAVMLLVHHEGKGLCGTYTRDIAQTK 81

Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
            +QVM  ++   +PL+CI+E+
Sbjct: 82  QHQVMERAKAEGHPLKCIVEE 102


>gi|225023808|ref|ZP_03713000.1| hypothetical protein EIKCOROL_00673 [Eikenella corrodens ATCC
           23834]
 gi|224943407|gb|EEG24616.1| hypothetical protein EIKCOROL_00673 [Eikenella corrodens ATCC
           23834]
          Length = 101

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 55/81 (67%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PK Y V L+ND+YTPM+FV+ +L + F      A+ +ML+VHH+G G CG+Y  +IA+ K
Sbjct: 20  PKRYGVFLLNDDYTPMDFVVGLLTDIFRLTENRAEAVMLQVHHEGKGLCGIYQKDIADTK 79

Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
             QV N +RQ  +PL  ++E+
Sbjct: 80  HQQVQNLARQAGHPLLSMVEE 100


>gi|205355853|ref|ZP_03222622.1| hypothetical protein Cj8421_1136 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205346287|gb|EDZ32921.1| hypothetical protein Cj8421_1136 [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 96

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 60/87 (68%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           +K+  PK+Y+V+L+ND+ T M+FVI +L N F+++ E A   ML++HH G G CG+Y  E
Sbjct: 10  TKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQNLEKASQTMLEIHHNGSGICGIYTQE 69

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IA  K  +V++ ++   +PLQ  +E++
Sbjct: 70  IALSKQKKVIDSAKLANFPLQAKVEEE 96


>gi|86152758|ref|ZP_01070963.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|121612672|ref|YP_001000785.1| hypothetical protein CJJ81176_1125 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|157415368|ref|YP_001482624.1| hypothetical protein C8J_1048 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|167005700|ref|ZP_02271458.1| hypothetical protein Cjejjejuni_05870 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|283956504|ref|ZP_06373984.1| hypothetical protein C1336_000250281 [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|166214732|sp|A1W094|CLPS_CAMJJ RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|172047149|sp|A8FMG0|CLPS_CAMJ8 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|85843643|gb|EAQ60853.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|87249258|gb|EAQ72219.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|157386332|gb|ABV52647.1| hypothetical protein C8J_1048 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|283792224|gb|EFC31013.1| hypothetical protein C1336_000250281 [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|307748009|gb|ADN91279.1| ATP-dependent Clp protease adapter protein clpS [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315932245|gb|EFV11188.1| ATP-dependent Clp protease adaptor protein ClpS family protein
           [Campylobacter jejuni subsp. jejuni 327]
          Length = 96

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 60/87 (68%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           +K+  PK+Y+V+L+ND+ T M+FVI +L N F+++ E A   ML++HH G G CG+Y  E
Sbjct: 10  TKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQNLEKASQTMLEIHHNGSGICGIYTQE 69

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IA  K  +V++ ++   +PLQ  +E++
Sbjct: 70  IALSKQKKVIDAAKLANFPLQAKVEEE 96


>gi|218767947|ref|YP_002342459.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           meningitidis Z2491]
 gi|12230806|sp|Q9JV14|CLPS_NEIMA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|121051955|emb|CAM08263.1| hypothetical protein NMA1046 [Neisseria meningitidis Z2491]
          Length = 103

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 53/81 (65%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PK Y V L+ND+YT MEFV+ +L   F    E A  +ML VHH+G G CG Y  +IA+ K
Sbjct: 22  PKRYGVFLLNDDYTTMEFVVEILTEVFMLAQEQAVAVMLLVHHEGKGLCGTYTRDIAQTK 81

Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
            +QVM  ++   +PL+CI+E+
Sbjct: 82  QHQVMERAKTEGHPLKCIVEE 102


>gi|206889423|ref|YP_002249321.1| ATP-dependent Clp protease adaptor protein ClpS
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741361|gb|ACI20418.1| ATP-dependent Clp protease adaptor protein ClpS
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 101

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 53/81 (65%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           P+LYRV L+ND+YT M+FV++VL   F K    A  IML VH  G G  G+Y  EIAE K
Sbjct: 18  PELYRVYLLNDDYTTMDFVVYVLMTIFDKSKVEATAIMLHVHKHGKGLAGIYPKEIAETK 77

Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
           V QV + +R   +PL+C +E+
Sbjct: 78  VYQVESLARAKGFPLKCSIER 98


>gi|225075508|ref|ZP_03718707.1| hypothetical protein NEIFLAOT_00521 [Neisseria flavescens
           NRL30031/H210]
 gi|241758489|ref|ZP_04756608.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           flavescens SK114]
 gi|319637941|ref|ZP_07992707.1| ATP-dependent Clp protease adapter protein ClpS [Neisseria mucosa
           C102]
 gi|224953143|gb|EEG34352.1| hypothetical protein NEIFLAOT_00521 [Neisseria flavescens
           NRL30031/H210]
 gi|241321324|gb|EER57472.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           flavescens SK114]
 gi|317401096|gb|EFV81751.1| ATP-dependent Clp protease adapter protein ClpS [Neisseria mucosa
           C102]
          Length = 103

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 53/81 (65%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PK Y V L+ND+YT MEFV+ +L   F    E A  +ML VHH+G G CG Y  +IA+ K
Sbjct: 22  PKRYGVFLLNDDYTTMEFVVEILTEVFMLAQEQAVAVMLLVHHEGKGLCGTYTRDIAQTK 81

Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
            +QVM  ++   +PL+CI+E+
Sbjct: 82  QHQVMERAKAEGHPLKCIVEE 102


>gi|15895099|ref|NP_348448.1| hypothetical protein CA_C1823 [Clostridium acetobutylicum ATCC 824]
 gi|21542321|sp|Q97I31|CLPS_CLOAB RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|15024798|gb|AAK79788.1|AE007691_6 Uncharacterized conserved protein [Clostridium acetobutylicum ATCC
           824]
 gi|325509237|gb|ADZ20873.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018]
          Length = 101

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/95 (42%), Positives = 56/95 (58%)

Query: 43  CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
             D  ++   K+  PK+Y+V+L ND+YT MEFVI +L N F K    A  I   VH  GI
Sbjct: 6   SFDENIKQKHKIEKPKMYKVILHNDDYTTMEFVIEILINVFNKVPANAVKITFDVHKNGI 65

Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           G  GVY Y+IA  K+N+V   + ++ YPL+  M +
Sbjct: 66  GIAGVYPYDIAATKINEVKKLAYKNGYPLKLTMGE 100


>gi|51244739|ref|YP_064623.1| hypothetical protein DP0887 [Desulfotalea psychrophila LSv54]
 gi|67460264|sp|Q6APV7|CLPS_DESPS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|50875776|emb|CAG35616.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 102

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 56/86 (65%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           + R P +YRVL+ ND+YT M+FV+ +L   F K    A+ IML VH   +G  G+Y +EI
Sbjct: 17  ETREPPMYRVLIHNDDYTSMDFVVAILMQIFSKTEAVAEEIMLTVHSSEVGVAGLYTHEI 76

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQK 138
           AE KV  V   + Q+++PL+C +E++
Sbjct: 77  AETKVAIVHQLAEQNEFPLRCSLEKE 102


>gi|281422658|ref|ZP_06253657.1| ATP-dependent Clp protease adaptor protein ClpS [Prevotella copri
           DSM 18205]
 gi|281403328|gb|EFB34008.1| ATP-dependent Clp protease adaptor protein ClpS [Prevotella copri
           DSM 18205]
          Length = 100

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 57/85 (67%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R  ++++ P  Y V++ ND++TPM+FV+ +L++ F+K    A+ IMLKVHH+     G Y
Sbjct: 11  RQKTRLKEPGRYVVMMFNDDFTPMDFVVEILESIFFKSQAEAEAIMLKVHHEEKAVVGTY 70

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQC 133
           +Y+IA+ KV + M  +R  ++PL+ 
Sbjct: 71  SYDIAKSKVEKAMEKARTQKFPLKL 95


>gi|153003706|ref|YP_001378031.1| ATP-dependent Clp protease adaptor protein ClpS [Anaeromyxobacter
           sp. Fw109-5]
 gi|152027279|gb|ABS25047.1| ATP-dependent Clp protease adaptor protein ClpS [Anaeromyxobacter
           sp. Fw109-5]
          Length = 108

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 55/91 (60%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            +   + + P L+RVLL ND+YT  EFV  VL   F+ D E+A  IML VH  G+G  G+
Sbjct: 18  TKAEKETKRPSLFRVLLHNDDYTTQEFVDWVLVTVFHHDPESAHRIMLHVHMHGVGLAGI 77

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           Y +EIAE K  + M  +R+ +YPL   +E +
Sbjct: 78  YPFEIAETKAEKTMALAREAEYPLLVTVEPE 108


>gi|326794631|ref|YP_004312451.1| ATP-dependent Clp protease adapter protein clpS [Marinomonas
           mediterranea MMB-1]
 gi|326545395|gb|ADZ90615.1| ATP-dependent Clp protease adapter protein clpS [Marinomonas
           mediterranea MMB-1]
          Length = 117

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 62/85 (72%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           ++  P +Y+V+L ND+YTPM+FV+ VLQ FF  D E A+ +ML+VH +G G CGVY + I
Sbjct: 30  ELSPPSMYQVVLFNDDYTPMDFVVFVLQRFFNMDGEKAEQVMLEVHMKGKGVCGVYPFGI 89

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           AE KV QV  + +Q+++PL C +++
Sbjct: 90  AETKVAQVQQFVQQNEHPLMCDLQK 114


>gi|331004964|ref|ZP_08328374.1| ATP-dependent Clp protease adaptor protein ClpS [gamma
           proteobacterium IMCC1989]
 gi|330421206|gb|EGG95462.1| ATP-dependent Clp protease adaptor protein ClpS [gamma
           proteobacterium IMCC1989]
          Length = 126

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 55/80 (68%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           V+ P +Y+V+++ND+YTPMEFV++ L++FF    E A  +ML+VH +G   CGVY  +IA
Sbjct: 39  VKKPPMYKVIMLNDDYTPMEFVVYALESFFGMGTEQATKVMLQVHTEGKAICGVYTKDIA 98

Query: 114 EMKVNQVMNYSRQHQYPLQC 133
           E K  QV   +  +++PL C
Sbjct: 99  ETKAAQVNQCAADNEHPLLC 118


>gi|146329659|ref|YP_001209565.1| ATP-dependent Clp protease adaptor protein ClpS [Dichelobacter
           nodosus VCS1703A]
 gi|146233129|gb|ABQ14107.1| ATP-dependent Clp protease adaptor protein ClpS [Dichelobacter
           nodosus VCS1703A]
          Length = 104

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 54/82 (65%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           S V  P L+ V+L ND+YT M+FVI V+  FFY+  E A+ +MLKVH +G    G++  +
Sbjct: 18  SDVAQPDLFEVVLHNDDYTTMDFVIEVICRFFYQTAEVAEKLMLKVHFEGSAVVGIFPRD 77

Query: 112 IAEMKVNQVMNYSRQHQYPLQC 133
           IAE K  QV+ Y+R+  +PL C
Sbjct: 78  IAETKARQVIAYAREKGHPLMC 99


>gi|57242270|ref|ZP_00370209.1| Uncharacterized ACR, COG2127 [Campylobacter upsaliensis RM3195]
 gi|57016950|gb|EAL53732.1| Uncharacterized ACR, COG2127 [Campylobacter upsaliensis RM3195]
          Length = 96

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 57/82 (69%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PK+Y+V+L+ND+ T M+FVI VL + F+   E A  IMLK+H +G G CG+Y  EIA  K
Sbjct: 15  PKMYKVVLLNDDVTTMDFVIEVLMHVFFHSFEKANEIMLKIHCEGSGVCGIYTQEIALSK 74

Query: 117 VNQVMNYSRQHQYPLQCIMEQK 138
             +V N +++ Q+PLQ  +E++
Sbjct: 75  QKKVQNMAKEAQFPLQSRVEEE 96


>gi|257453454|ref|ZP_05618749.1| ATP-dependent Clp protease adaptor protein ClpS [Enhydrobacter
           aerosaccus SK60]
 gi|257449206|gb|EEV24154.1| ATP-dependent Clp protease adaptor protein ClpS [Enhydrobacter
           aerosaccus SK60]
          Length = 161

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 55/87 (63%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            +++ P++Y V++ ND+YTPMEFV+ VLQN F    ++A  IML +H QG G  G+Y  +
Sbjct: 74  PELKKPQMYAVVMYNDDYTPMEFVVDVLQNHFKHTLDSAISIMLAIHQQGKGIAGIYPKD 133

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IAE K   V   +RQ  YPL   +E +
Sbjct: 134 IAETKAQAVNREARQAGYPLLSQIEPQ 160


>gi|161897896|ref|YP_433586.2| ATP-dependent Clp protease adaptor protein ClpS [Hahella chejuensis
           KCTC 2396]
          Length = 126

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 55/84 (65%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           ++ P +Y+V+++ND+YTPM+FV+ VL  FF      A  +ML VH QG   CGV+  +IA
Sbjct: 41  LKRPSMYQVVMLNDDYTPMDFVVEVLIRFFNMSEPKATQVMLAVHTQGRAVCGVFTRDIA 100

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E K  QV  YS + ++PL C +E+
Sbjct: 101 ESKAAQVNQYSSECEHPLLCEIER 124


>gi|114707424|ref|ZP_01440320.1| ATP-dependent Clp protease adaptor protein ClpS [Fulvimarina pelagi
           HTCC2506]
 gi|114536983|gb|EAU40111.1| ATP-dependent Clp protease adaptor protein ClpS [Fulvimarina pelagi
           HTCC2506]
          Length = 101

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 55/91 (60%)

Query: 41  DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
           D  ++ + R   KV  PKLY+VLL+ND+YTP EFV+ VL+  F      A+ +M+  H +
Sbjct: 3   DTTVERKTRVKPKVERPKLYKVLLLNDDYTPREFVVMVLRAVFRLSDSQAETVMMTAHQK 62

Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPL 131
           G     VY  ++AE K ++  + +++H YPL
Sbjct: 63  GSCVVSVYPRDVAETKASEATDLAKEHGYPL 93


>gi|218891218|ref|YP_002440084.1| hypothetical protein PLES_24841 [Pseudomonas aeruginosa LESB58]
 gi|254235607|ref|ZP_04928930.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254241054|ref|ZP_04934376.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|308154504|ref|NP_251311.3| hypothetical protein PA2621 [Pseudomonas aeruginosa PAO1]
 gi|313107658|ref|ZP_07793841.1| ATP-dependent Clp protease adaptor protein clpS [Pseudomonas
           aeruginosa 39016]
 gi|9948687|gb|AAG06009.1|AE004690_9 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|126167538|gb|EAZ53049.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126194432|gb|EAZ58495.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218771443|emb|CAW27210.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
 gi|310880343|gb|EFQ38937.1| ATP-dependent Clp protease adaptor protein clpS [Pseudomonas
           aeruginosa 39016]
          Length = 78

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 52/76 (68%)

Query: 62  VLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVM 121
           ++L ND+YTPM+FV+ VL+ FF  D E A  IML VH QG   CG++  ++AE K  QV 
Sbjct: 1   MVLFNDDYTPMDFVVEVLEVFFNMDREKATKIMLTVHTQGKAVCGLFTRDVAETKAMQVN 60

Query: 122 NYSRQHQYPLQCIMEQ 137
            Y+R+ Q+PL C +E+
Sbjct: 61  QYARESQHPLLCEIEK 76


>gi|326793263|ref|YP_004311084.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
           lentocellum DSM 5427]
 gi|326544027|gb|ADZ85886.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
           lentocellum DSM 5427]
          Length = 99

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 57/89 (64%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           +  +KV++PK Y+V++ ND+YT MEFV+ VL   F K    A+ IM+ VH  G G  G+Y
Sbjct: 10  KIKAKVKLPKQYQVIMFNDDYTTMEFVVEVLTQIFNKSAAEAEKIMMDVHKAGHGVAGIY 69

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +Y+IA  K    M+++++  +P +  +E+
Sbjct: 70  SYDIAMTKAGTAMSWAKEEGFPFKLSVEE 98


>gi|315186429|gb|EFU20189.1| ATP-dependent Clp protease adaptor protein ClpS [Spirochaeta
           thermophila DSM 6578]
          Length = 115

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 53/79 (67%)

Query: 59  LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
           +Y V+L+ND++TPMEFV+ +L + F+KD   A  IML VH  G G+   Y Y+IA  KV 
Sbjct: 36  MYWVVLLNDDFTPMEFVVDILVDIFHKDRVEATKIMLTVHRTGKGKVATYPYDIAVTKVA 95

Query: 119 QVMNYSRQHQYPLQCIMEQ 137
           QV   +R+  +PL+C +E+
Sbjct: 96  QVHRRAREAGHPLRCTVEK 114


>gi|154148611|ref|YP_001406669.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
           hominis ATCC BAA-381]
 gi|153804620|gb|ABS51627.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
           hominis ATCC BAA-381]
          Length = 97

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 60/93 (64%)

Query: 46  SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
           +E +  +K+ +PK+YRV+L+ND+ T M+FV+ +L   F K  + A  IML +H  G G C
Sbjct: 5   NESQTKTKIFIPKIYRVILLNDDVTTMDFVVMILMEIFEKTRDEAINIMLHIHKNGSGIC 64

Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           G Y  EIAE K ++V   +++  +PL C +E++
Sbjct: 65  GSYIKEIAETKKDEVKMLAKKANFPLVCEIEEE 97


>gi|125973731|ref|YP_001037641.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
           thermocellum ATCC 27405]
 gi|256005533|ref|ZP_05430494.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
           thermocellum DSM 2360]
 gi|281417888|ref|ZP_06248908.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
           thermocellum JW20]
 gi|229889819|sp|A3DER9|CLPS_CLOTH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|125713956|gb|ABN52448.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
           thermocellum ATCC 27405]
 gi|255990513|gb|EEU00634.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
           thermocellum DSM 2360]
 gi|281409290|gb|EFB39548.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
           thermocellum JW20]
 gi|316940075|gb|ADU74109.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
           thermocellum DSM 1313]
          Length = 99

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 52/80 (65%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PK+Y+V+L+ND+YT M+FV+ +L   F+K    A  IML VH +G G  GVY Y+IA  K
Sbjct: 18  PKMYKVILLNDDYTTMDFVVEILITVFHKTAADATRIMLDVHRKGKGVVGVYTYDIARSK 77

Query: 117 VNQVMNYSRQHQYPLQCIME 136
           +  V   + + ++PL  +ME
Sbjct: 78  IALVEKMAAEREFPLAAVME 97


>gi|283954672|ref|ZP_06372190.1| hypothetical protein C414_000240081 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793864|gb|EFC32615.1| hypothetical protein C414_000240081 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 96

 Score = 80.5 bits (197), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 59/86 (68%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           K+  PK+Y+V+L+ND+ T M+FVI +L N F+++ E A   ML++HH G G CG+Y  EI
Sbjct: 11  KLSEPKMYKVILLNDDVTTMDFVIEILINIFHQNLEKANQTMLEIHHNGSGICGIYTQEI 70

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQK 138
           A  K  +V++ ++   +PLQ  +E++
Sbjct: 71  ALSKQKKVIDAAKLANFPLQVKVEEE 96


>gi|317051275|ref|YP_004112391.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfurispirillum
           indicum S5]
 gi|316946359|gb|ADU65835.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfurispirillum
           indicum S5]
          Length = 100

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 53/84 (63%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           V+ P+ Y VLL+ND+++  +FV+ VL   F K  + A  I   VHH G G CG+Y +EIA
Sbjct: 16  VKEPRPYMVLLLNDDFSTWDFVVEVLVRVFRKTRDDADKITYHVHHNGQGVCGIYPFEIA 75

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           + KV QV   ++   YPL+C+M +
Sbjct: 76  QTKVQQVHELAKSRGYPLRCVMRE 99


>gi|315638592|ref|ZP_07893766.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
           upsaliensis JV21]
 gi|315481216|gb|EFU71846.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
           upsaliensis JV21]
          Length = 96

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 56/82 (68%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PK+Y+V+L+ND+ T M+FVI VL   F+   E A  IMLK+H +G G CG+Y  EIA  K
Sbjct: 15  PKMYKVVLLNDDVTTMDFVIEVLMYVFFHSFEKANEIMLKIHCEGSGVCGIYTQEIALSK 74

Query: 117 VNQVMNYSRQHQYPLQCIMEQK 138
             +V N +++ Q+PLQ  +E++
Sbjct: 75  QKKVQNMAKEAQFPLQSRVEEE 96


>gi|307718944|ref|YP_003874476.1| ATP-dependent Clp protease adaptor protein clpS [Spirochaeta
           thermophila DSM 6192]
 gi|306532669|gb|ADN02203.1| ATP-dependent Clp protease adaptor protein clpS [Spirochaeta
           thermophila DSM 6192]
          Length = 134

 Score = 80.1 bits (196), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 53/79 (67%)

Query: 59  LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
           +Y V+L+ND++TPMEFV+ +L + F+KD   A  IML VH  G G+   Y Y+IA  KV 
Sbjct: 55  MYWVVLLNDDFTPMEFVVDILVDIFHKDRVEATKIMLTVHRTGKGKVATYPYDIAVTKVA 114

Query: 119 QVMNYSRQHQYPLQCIMEQ 137
           QV   +R+  +PL+C +E+
Sbjct: 115 QVHRRAREAGHPLRCTVEK 133


>gi|294668967|ref|ZP_06734054.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria elongata
           subsp. glycolytica ATCC 29315]
 gi|291309140|gb|EFE50383.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria elongata
           subsp. glycolytica ATCC 29315]
          Length = 101

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 55/85 (64%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           ++R P+ Y V L+ND+YT M+FV+ VL   F    + A  +ML VHH+G G CGVY  +I
Sbjct: 15  QLRPPRKYGVFLLNDDYTTMDFVVEVLTEVFRLPEDRAVAVMLLVHHEGKGLCGVYTRDI 74

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           A+ K  QV + +    +PL+CI+E+
Sbjct: 75  AQTKQMQVHHRAEDAGFPLKCILEE 99


>gi|49082482|gb|AAT50641.1| PA2621 [synthetic construct]
          Length = 79

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 51/76 (67%)

Query: 62  VLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVM 121
           ++L ND+YTPM+FV+ VL+ FF  D E A   ML VH QG   CG++  ++AE K  QV 
Sbjct: 1   MVLFNDDYTPMDFVVEVLEVFFNMDREKATKTMLTVHTQGKAVCGLFTRDVAETKAMQVN 60

Query: 122 NYSRQHQYPLQCIMEQ 137
            Y+R+ Q+PL C +E+
Sbjct: 61  QYARESQHPLLCEIEK 76


>gi|149195297|ref|ZP_01872385.1| hypothetical protein CMTB2_00354 [Caminibacter mediatlanticus TB-2]
 gi|149134561|gb|EDM23049.1| hypothetical protein CMTB2_00354 [Caminibacter mediatlanticus TB-2]
          Length = 83

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 53/81 (65%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PKLY+V+L+ND+YT  +FVI +L+  F K  E A  + LKV  +G    G+Y YEIA MK
Sbjct: 2   PKLYKVILLNDDYTTFDFVIEILKTVFGKSEEDAINLTLKVDREGSAVVGLYPYEIALMK 61

Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
           V++V   +R   YPL+  +E+
Sbjct: 62  VDKVHQLARSAGYPLRARIEE 82


>gi|268607890|ref|ZP_06141621.1| ATP-dependent Clp protease adaptor protein ClpS [Ruminococcus
           flavefaciens FD-1]
          Length = 99

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 56/89 (62%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R  S V+ P+LY V+++ND++T MEFV+ VL   F+KD  TA+ IM+ VH  G    G Y
Sbjct: 10  RSDSMVKEPRLYSVIMINDDFTTMEFVVGVLVEIFHKDEITAQAIMMHVHKNGQAVVGKY 69

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            Y+IA  +V + +  +++  +P +  +E+
Sbjct: 70  PYDIASTRVKKALERAKEEGFPFRMTIEE 98


>gi|294787951|ref|ZP_06753195.1| ATP-dependent Clp protease adaptor protein ClpS [Simonsiella
           muelleri ATCC 29453]
 gi|294484244|gb|EFG31927.1| ATP-dependent Clp protease adaptor protein ClpS [Simonsiella
           muelleri ATCC 29453]
          Length = 100

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 56/86 (65%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           +++  PK Y V L+ND+YT MEFV+ +L + F +  E A  +ML++HH G G CGVY  +
Sbjct: 13  NQIAPPKQYGVYLLNDDYTTMEFVVQILMDVFRQPEERAISVMLEIHHHGKGLCGVYTRD 72

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +A+ K +QVM  +    +PL C +E+
Sbjct: 73  MAQTKQHQVMILAADAGFPLLCTVEE 98


>gi|262277126|ref|ZP_06054919.1| ATP-dependent Clp protease adaptor protein ClpS [alpha
           proteobacterium HIMB114]
 gi|262224229|gb|EEY74688.1| ATP-dependent Clp protease adaptor protein ClpS [alpha
           proteobacterium HIMB114]
          Length = 100

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 63/92 (68%)

Query: 46  SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
           S++ F  + + PK ++++L+ND++T M+FV+ +L  F  K +  A  +MLK+H++G   C
Sbjct: 9   SQLEFREQTKKPKFFKLILLNDDFTTMDFVVKILVMFLNKSNHEANFLMLKIHNEGSAIC 68

Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           GV+  ++A    N++ N+S+ ++ PL+CI+++
Sbjct: 69  GVFPKDVAVTIQNKIHNFSKINKQPLKCIVKE 100


>gi|303242598|ref|ZP_07329074.1| ATP-dependent Clp protease adaptor protein ClpS [Acetivibrio
           cellulolyticus CD2]
 gi|302589855|gb|EFL59627.1| ATP-dependent Clp protease adaptor protein ClpS [Acetivibrio
           cellulolyticus CD2]
          Length = 99

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 52/80 (65%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PK+Y+V+L+ND+YT MEFVI VL   F+K+   A  IML VH +G G  G Y Y+IA  K
Sbjct: 18  PKMYKVILLNDDYTTMEFVIEVLIAVFHKNPTDATQIMLDVHEKGKGIVGAYTYDIACTK 77

Query: 117 VNQVMNYSRQHQYPLQCIME 136
           + QV   + +  +PL  +ME
Sbjct: 78  IAQVEEMAIKRDFPLVTVME 97


>gi|257460421|ref|ZP_05625522.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
           gracilis RM3268]
 gi|257441752|gb|EEV16894.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
           gracilis RM3268]
          Length = 101

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 56/90 (62%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R  +K  VP+ Y+V+L+ND+ T M+FV+++L   F K+   A  +M+KVH QG   CG 
Sbjct: 11  TRAKTKSFVPRPYKVILLNDDVTTMDFVVYILMEIFAKNFNDAVDLMMKVHKQGRAVCGA 70

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           Y  EIAE K   V+  ++   +PL+C +E+
Sbjct: 71  YPKEIAECKQQAVLQAAKAAGFPLRCEIEE 100


>gi|294672831|ref|YP_003573447.1| ATP-dependent Clp protease adaptor protein ClpS [Prevotella
           ruminicola 23]
 gi|294472147|gb|ADE81536.1| ATP-dependent Clp protease adaptor protein ClpS [Prevotella
           ruminicola 23]
          Length = 101

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 55/88 (62%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R  + +R P+ Y+V + ND++T MEFV+ +L   F+K    A+ +ML+VHH      G+Y
Sbjct: 11  RQHTNLREPRRYKVTIYNDDFTTMEFVVKILTQVFFKSETEAEALMLQVHHSDKAVVGIY 70

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIME 136
           +Y++A  KV +  N +R+  +PL+  +E
Sbjct: 71  SYDVATSKVRKATNMAREEGFPLRLTVE 98


>gi|118475182|ref|YP_891885.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118414408|gb|ABK82828.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 99

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 55/82 (67%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           P L++V+L+ND  T M+FV+ +L + F K    A  +MLK+H  G   CG+Y  EIA+ K
Sbjct: 18  PNLFKVMLLNDEVTTMDFVVMILIDIFNKSKNEAIELMLKIHQSGRAICGIYTKEIAQTK 77

Query: 117 VNQVMNYSRQHQYPLQCIMEQK 138
             +V+N ++ + +PL+C++E++
Sbjct: 78  QMEVLNLAKANGFPLKCVIEEE 99


>gi|255321468|ref|ZP_05362626.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
           showae RM3277]
 gi|255301324|gb|EET80583.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
           showae RM3277]
          Length = 103

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 59/94 (62%)

Query: 45  DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
           + +V    K   P+ ++V+L+ND+ T M+FV+ VL   F+   ++A  +MLK+H++G G 
Sbjct: 10  ERDVAIKEKPEFPRKFKVILLNDDVTSMDFVVGVLVEIFHHTAQSAVAVMLKIHNEGSGV 69

Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            G+Y  EIA+ K NQ +  +    YPL+ ++E++
Sbjct: 70  AGIYNKEIAQTKQNQTLKAAAAAGYPLKAVVEEE 103


>gi|223040454|ref|ZP_03610728.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
           rectus RM3267]
 gi|222878304|gb|EEF13411.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
           rectus RM3267]
          Length = 103

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 60/94 (63%)

Query: 45  DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
           + +V    K   P+ ++V+L+ND+ T M+FV+ VL   F+   ++A  +MLK+H++G G 
Sbjct: 10  ERDVALKEKPEFPRKFKVVLLNDDVTSMDFVVSVLVEIFHHTTQSAVTVMLKIHNEGSGI 69

Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            GVYA EIA+ K + V+  +    YPL+ I+E++
Sbjct: 70  AGVYAKEIAQTKQSDVLKAAAVAGYPLKAIIEEE 103


>gi|329120145|ref|ZP_08248815.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327463676|gb|EGF09994.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 101

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 52/85 (61%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           K+R P+ Y V L+ND+YT M+FV  VL   F+   + A  +ML VHH+G G CG +  ++
Sbjct: 15  KLRPPRKYGVFLLNDDYTTMDFVAQVLTEVFFLSEDRAFAVMLLVHHEGKGLCGTFTRDV 74

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           A+ K  QV   +    +PL+C +E+
Sbjct: 75  AQTKQAQVHRRAADAGFPLKCTIEE 99


>gi|198275274|ref|ZP_03207805.1| hypothetical protein BACPLE_01433 [Bacteroides plebeius DSM 17135]
 gi|198271857|gb|EDY96127.1| hypothetical protein BACPLE_01433 [Bacteroides plebeius DSM 17135]
          Length = 102

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 53/80 (66%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PK Y+V+L ND++T M+FV+ VL+  F+K  E A+ +MLKVH Q     GVY+Y++A+ K
Sbjct: 19  PKHYKVILHNDDFTTMDFVVKVLKIVFFKSQEEAEALMLKVHQQQSATAGVYSYDVAQSK 78

Query: 117 VNQVMNYSRQHQYPLQCIME 136
             +    +R+  +PL+  +E
Sbjct: 79  AQKATQMAREEGFPLRLTVE 98


>gi|311694972|gb|ADP97845.1| ATP-dependent Clp protease adaptor protein ClpS [marine bacterium
           HP15]
          Length = 78

 Score = 77.4 bits (189), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 50/75 (66%)

Query: 63  LLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMN 122
           +L+ND+YTPM+FV+ VL  FF  + E A  +ML VH QG   CGVY  +IAE K  QV  
Sbjct: 2   VLLNDDYTPMDFVVDVLMKFFGMNEEKATQVMLLVHTQGKAVCGVYTRDIAETKAAQVNQ 61

Query: 123 YSRQHQYPLQCIMEQ 137
           YS + ++PL C +E+
Sbjct: 62  YSSECEHPLLCEIER 76


>gi|183221238|ref|YP_001839234.1| ATP-dependent Clp protease adaptor protein Clp [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911329|ref|YP_001962884.1| hypothetical protein LBF_1799 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|238687770|sp|B0S9H9|CLPS_LEPBA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238687849|sp|B0SS68|CLPS_LEPBP RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|167776005|gb|ABZ94306.1| conserved hypothetical protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167779660|gb|ABZ97958.1| ATP-dependent Clp protease adaptor protein clp [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 113

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 62/104 (59%)

Query: 30  SRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
           S  N+K   +F+  L  + +   K++ P  Y+V+L+ND+YTP EFV++VL   F K  + 
Sbjct: 2   SESNRKSYTDFNVELLEKEKQKKKLKKPDRYKVILINDDYTPQEFVVYVLAVVFRKSMDE 61

Query: 90  AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQC 133
           ++ IM + H +G   CGVY+ +IA  KV +V   +    +PLQC
Sbjct: 62  SRQIMWRAHTEGSAVCGVYSLDIARTKVAEVHKLADDAGHPLQC 105


>gi|219855399|ref|YP_002472521.1| hypothetical protein CKR_2056 [Clostridium kluyveri NBRC 12016]
 gi|219569123|dbj|BAH07107.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 104

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 57/90 (63%), Gaps = 2/90 (2%)

Query: 51  SSKVRV--PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           +SKV +  P +Y+V++ ND+YT MEFV++VL   F K    A  IM  VH +GIG  G+Y
Sbjct: 15  NSKVEIKRPPMYKVIIYNDDYTTMEFVVNVLVKIFKKSDVEAVQIMYDVHRKGIGIAGIY 74

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            Y+IA  K  Q ++ +R   +PL+  ME++
Sbjct: 75  VYDIAVTKTAQAISMARNSGFPLKFSMEEE 104


>gi|300855650|ref|YP_003780634.1| ATP-dependent protease adaptor protein ClpS [Clostridium
           ljungdahlii DSM 13528]
 gi|300435765|gb|ADK15532.1| ATP-dependent protease adaptor protein ClpS [Clostridium
           ljungdahlii DSM 13528]
          Length = 99

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 53/86 (61%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           K++ P +Y+V++ ND+YT MEFV+ VL   F K    A  IM  VH +GIG  GVY Y+I
Sbjct: 14  KIKPPSMYKVIIHNDDYTTMEFVVEVLIKIFEKSAVEATKIMYDVHRRGIGVAGVYVYDI 73

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQK 138
           A  K+ Q +  +    +PL+  ME++
Sbjct: 74  AATKIMQAVKMAESSGFPLKFSMEEE 99


>gi|254462423|ref|ZP_05075839.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacterales
           bacterium HTCC2083]
 gi|206679012|gb|EDZ43499.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 67

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 50/67 (74%)

Query: 72  MEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPL 131
           MEFV+ +L+ FF  +H  +  IML VH +G+   GV++ EIAE KV QVM+++R+HQ+PL
Sbjct: 1   MEFVVLILERFFGLNHAQSFEIMLTVHQKGVAVVGVFSQEIAETKVGQVMDFARRHQHPL 60

Query: 132 QCIMEQK 138
           QC ME++
Sbjct: 61  QCTMEKE 67


>gi|153954954|ref|YP_001395719.1| ClpS [Clostridium kluyveri DSM 555]
 gi|146347812|gb|EDK34348.1| ClpS [Clostridium kluyveri DSM 555]
          Length = 99

 Score = 76.6 bits (187), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 57/90 (63%), Gaps = 2/90 (2%)

Query: 51  SSKVRV--PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           +SKV +  P +Y+V++ ND+YT MEFV++VL   F K    A  IM  VH +GIG  G+Y
Sbjct: 10  NSKVEIKRPPMYKVIIYNDDYTTMEFVVNVLVKIFKKSDVEAVQIMYDVHRKGIGIAGIY 69

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            Y+IA  K  Q ++ +R   +PL+  ME++
Sbjct: 70  VYDIAVTKTAQAISMARNSGFPLKFSMEEE 99


>gi|148653394|ref|YP_001280487.1| ATP-dependent Clp protease adaptor protein ClpS [Psychrobacter sp.
           PRwf-1]
 gi|148572478|gb|ABQ94537.1| ATP-dependent Clp protease adaptor protein ClpS [Psychrobacter sp.
           PRwf-1]
          Length = 140

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 55/85 (64%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            ++  P +Y V++ ND+YTPMEFV++VLQ+ F  + + A  IML +H+QG G  G+Y  +
Sbjct: 51  PEITEPPMYAVVMYNDDYTPMEFVVYVLQSEFRHNMDKAVEIMLNIHNQGRGIAGIYPKD 110

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIME 136
           IAE K  +V   +R+  YPL   +E
Sbjct: 111 IAETKAKKVNQTARKEGYPLLTQIE 135


>gi|323693039|ref|ZP_08107259.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
           symbiosum WAL-14673]
 gi|323502920|gb|EGB18762.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
           symbiosum WAL-14673]
          Length = 100

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 54/87 (62%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           S+VRVPK Y V++ ND+YTPM+FV+ VL   F K  E A  +M+ VH  G    G+Y+Y+
Sbjct: 13  SQVRVPKRYSVIMHNDDYTPMDFVVRVLMEIFNKRKEEAVMLMMMVHKGGKAVVGMYSYD 72

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IA  K+  V   + +  YP +  +E++
Sbjct: 73  IALTKIRLVTALAEEEGYPFRLTVEEQ 99


>gi|323485967|ref|ZP_08091299.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
           symbiosum WAL-14163]
 gi|323400729|gb|EGA93095.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
           symbiosum WAL-14163]
          Length = 100

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 54/87 (62%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           S+VRVPK Y V++ ND+YTPM+FV+ VL   F K  E A  +M+ VH  G    G+Y+Y+
Sbjct: 13  SQVRVPKRYSVIMHNDDYTPMDFVVQVLMEIFNKRKEEAVMLMMMVHKGGKAVVGMYSYD 72

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IA  K+  V   + +  YP +  +E++
Sbjct: 73  IALTKIRLVTALAEEEGYPFRLTVEEQ 99


>gi|239907009|ref|YP_002953750.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
           magneticus RS-1]
 gi|239796875|dbj|BAH75864.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
           magneticus RS-1]
          Length = 119

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 61/85 (71%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           +VR P+ ++V+L ND+YT MEFV+ VL + F K+   A  IML VH+ G+G CG+Y  E+
Sbjct: 34  EVREPRQFKVMLHNDDYTTMEFVVLVLVSVFRKNENEATQIMLNVHNTGVGVCGIYTAEV 93

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           AE+KV+ V   ++++ YPL+C ME+
Sbjct: 94  AELKVSLVHRLAKENGYPLRCSMEE 118


>gi|302339654|ref|YP_003804860.1| ATP-dependent Clp protease adaptor protein ClpS [Spirochaeta
           smaragdinae DSM 11293]
 gi|301636839|gb|ADK82266.1| ATP-dependent Clp protease adaptor protein ClpS [Spirochaeta
           smaragdinae DSM 11293]
          Length = 103

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 60/99 (60%), Gaps = 8/99 (8%)

Query: 46  SEVRFSSKV--------RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
           S+ RF +K+        R P +YRV+L+ND+YT M+FV+ V++  F+   E A  IM  V
Sbjct: 2   SDFRFGTKLEDRSQEQYREPPMYRVILLNDDYTTMDFVVKVIRQVFHHSSEEAVKIMFDV 61

Query: 98  HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
           H +G G  G Y+ +IA  K  QV+  ++  ++PL+C +E
Sbjct: 62  HKKGKGLVGCYSQDIAVTKQRQVLVMAKSEEFPLRCEIE 100


>gi|226330747|ref|ZP_03806265.1| hypothetical protein PROPEN_04667 [Proteus penneri ATCC 35198]
 gi|225201542|gb|EEG83896.1| hypothetical protein PROPEN_04667 [Proteus penneri ATCC 35198]
          Length = 67

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 47/66 (71%)

Query: 72  MEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPL 131
           M+FV+ VL  +F+   E A  IML VHH+G G CGVY+ +IAE KV QV  Y+R+++YPL
Sbjct: 1   MDFVVEVLTMYFFLSEEKATQIMLDVHHKGKGVCGVYSADIAETKVAQVNLYARENEYPL 60

Query: 132 QCIMEQ 137
            C +EQ
Sbjct: 61  LCTLEQ 66


>gi|326560256|gb|EGE10644.1| ATP-dependent Clp protease adaptor protein ClpS [Moraxella
           catarrhalis 7169]
 gi|326566426|gb|EGE16576.1| ATP-dependent Clp protease adaptor protein ClpS [Moraxella
           catarrhalis BC1]
          Length = 121

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 60/94 (63%), Gaps = 2/94 (2%)

Query: 45  DSEVRFSSKVRV--PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
           D++V   +K++V  PKLY V++ NDNYT M+FV++VL   F  + + A  +M+++H  G 
Sbjct: 26  DTDVITETKIQVKQPKLYTVIMYNDNYTTMDFVVYVLVEIFQHNIDKAYQLMMQIHELGQ 85

Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
               +  Y++AEMKV++V   + Q  YPL  ++E
Sbjct: 86  AAVALLPYDLAEMKVDEVTALAEQESYPLLTMIE 119


>gi|296113266|ref|YP_003627204.1| ATP-dependent Clp protease adaptor protein ClpS [Moraxella
           catarrhalis RH4]
 gi|295920961|gb|ADG61312.1| ATP-dependent Clp protease adaptor protein ClpS [Moraxella
           catarrhalis RH4]
 gi|326570234|gb|EGE20279.1| ATP-dependent Clp protease adaptor protein ClpS [Moraxella
           catarrhalis BC8]
          Length = 112

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 59/94 (62%), Gaps = 2/94 (2%)

Query: 45  DSEVRFSSKVRV--PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
           D++V   +K++V  PKLY V++ NDNYT M+FV++VL   F  + + A  +M+++H  G 
Sbjct: 17  DTDVITETKIQVKQPKLYTVIMYNDNYTTMDFVVYVLVEIFQHNIDKAYQLMMQIHELGQ 76

Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
               +  Y++AEMKV++V   + Q  YPL   +E
Sbjct: 77  AAVALLPYDLAEMKVDEVTALAEQESYPLLTTIE 110


>gi|302671436|ref|YP_003831396.1| ATP-dependent Clp protease adaptor protein ClpS [Butyrivibrio
           proteoclasticus B316]
 gi|302395909|gb|ADL34814.1| ATP-dependent Clp protease adaptor protein ClpS [Butyrivibrio
           proteoclasticus B316]
          Length = 99

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 57/89 (64%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           +  S+++ P+ Y V+++ND++T M+FV+ +L + F+KD  +A+ IML VH  G    G Y
Sbjct: 10  KTGSRIKEPRQYNVIMLNDDFTTMDFVVSILVDIFHKDPVSAEAIMLGVHKSGQAVVGKY 69

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            Y+IA  +VN  +  +++  +P +  +E+
Sbjct: 70  PYDIAVTRVNNALARAKKEGFPFRMTVEE 98


>gi|118591833|ref|ZP_01549228.1| ATP-dependent Clp protease adaptor protein ClpS [Stappia aggregata
           IAM 12614]
 gi|118435476|gb|EAV42122.1| ATP-dependent Clp protease adaptor protein ClpS [Stappia aggregata
           IAM 12614]
          Length = 100

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 55/85 (64%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           +KV+ PKLY+V+L+ND+YTP EFV+ +L+  F  D   A+ +M+  H +G+    VY  +
Sbjct: 14  TKVQRPKLYKVMLLNDDYTPREFVVLILKAEFRLDESQAEVVMMTAHQKGVCVVSVYPRD 73

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIME 136
           +AE K  + ++ + +  YPLQ  +E
Sbjct: 74  VAETKATRAIDAAVRLGYPLQFTVE 98


>gi|150018965|ref|YP_001311219.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
           beijerinckii NCIMB 8052]
 gi|149905430|gb|ABR36263.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
           beijerinckii NCIMB 8052]
          Length = 99

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 56/84 (66%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           V+ PK Y+V++ ND+YT MEFVI++L   F K    A+ IML VH +G G  G+Y+Y+IA
Sbjct: 15  VKKPKNYKVVMYNDDYTTMEFVINILVVVFNKKLIDAEKIMLDVHERGKGIAGIYSYDIA 74

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
             KV+  M+ +++  +P +  +E+
Sbjct: 75  VTKVSTAMSMAKEKGFPFKLTVEE 98


>gi|161610776|ref|NP_946554.2| ATP-dependent Clp protease adaptor [Rhodopseudomonas palustris
           CGA009]
 gi|192289806|ref|YP_001990411.1| ATP-dependent Clp protease adaptor [Rhodopseudomonas palustris
           TIE-1]
 gi|67460483|sp|Q6NAI2|CLPS1_RHOPA RecName: Full=ATP-dependent Clp protease adapter protein ClpS 1
 gi|192283555|gb|ACE99935.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris TIE-1]
          Length = 103

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 2/90 (2%)

Query: 44  LDSEVRFSSKVRV--PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
           L  + +  +K++V  PKL++V+LVND+YTP EFV+ VL+  F    + A  +ML  H +G
Sbjct: 6   LKPKTKAKAKIKVERPKLHKVILVNDDYTPREFVVSVLKGEFRMTEDQATKVMLTAHQRG 65

Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPL 131
           +   GV+  ++AE K  +  +  R   YPL
Sbjct: 66  VCVVGVFTKDVAETKATRATDAGRAKGYPL 95


>gi|326562900|gb|EGE13187.1| ATP-dependent Clp protease adaptor protein ClpS [Moraxella
           catarrhalis 46P47B1]
 gi|326565261|gb|EGE15446.1| ATP-dependent Clp protease adaptor protein ClpS [Moraxella
           catarrhalis 12P80B1]
 gi|326570971|gb|EGE20995.1| ATP-dependent Clp protease adaptor protein ClpS [Moraxella
           catarrhalis BC7]
 gi|326575834|gb|EGE25757.1| ATP-dependent Clp protease adaptor protein ClpS [Moraxella
           catarrhalis CO72]
 gi|326576916|gb|EGE26822.1| ATP-dependent Clp protease adaptor protein ClpS [Moraxella
           catarrhalis O35E]
          Length = 121

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 59/94 (62%), Gaps = 2/94 (2%)

Query: 45  DSEVRFSSKVRV--PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
           D++V   +K++V  PKLY V++ NDNYT M+FV++VL   F  + + A  +M+++H  G 
Sbjct: 26  DTDVITETKIQVKQPKLYTVIMYNDNYTTMDFVVYVLVEIFQHNIDKAYQLMMQIHELGQ 85

Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
               +  Y++AEMKV++V   + Q  YPL   +E
Sbjct: 86  AAVALLPYDLAEMKVDEVTALAEQESYPLLTTIE 119


>gi|262394728|ref|YP_003286582.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio sp. Ex25]
 gi|262338322|gb|ACY52117.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio sp. Ex25]
          Length = 67

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 47/66 (71%)

Query: 72  MEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPL 131
           M+FVI VL+ FF  D + A  IMLK+H++G   CG Y+ EIAE KV QV  Y+R++++PL
Sbjct: 1   MDFVIEVLERFFSHDIDKATQIMLKIHYEGKAICGTYSAEIAETKVAQVTMYARENEHPL 60

Query: 132 QCIMEQ 137
            C MEQ
Sbjct: 61  LCTMEQ 66


>gi|93006502|ref|YP_580939.1| ATP-dependent Clp protease adaptor protein ClpS [Psychrobacter
           cryohalolentis K5]
 gi|92394180|gb|ABE75455.1| ATP-dependent Clp protease adaptor protein ClpS [Psychrobacter
           cryohalolentis K5]
          Length = 135

 Score = 74.7 bits (182), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 63/107 (58%), Gaps = 1/107 (0%)

Query: 31  RMNKKGIAEFDNCLDSEVRFS-SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
           R+ + G  E +    ++V  +  +V  P +Y V++ NDNYTPMEFV+++LQ+ F    ++
Sbjct: 24  RLAQVGEPEGETAPQADVLVAEPEVAKPPMYAVVMYNDNYTPMEFVVYILQSEFRHSMDS 83

Query: 90  AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
           A  IML +H+   G  G+Y  +IAE K  +V + + +  YPL   +E
Sbjct: 84  AVEIMLTIHNSSKGIAGIYPKDIAETKAKKVNSLAHREGYPLLTQIE 130


>gi|261210696|ref|ZP_05924988.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio sp. RC341]
 gi|260840181|gb|EEX66761.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio sp. RC341]
          Length = 67

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 46/66 (69%)

Query: 72  MEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPL 131
           M+FVI +L+ FF  D E A  +MLKVH++G   CG +  E+AE KV QV  YSR++++PL
Sbjct: 1   MDFVIEILERFFSMDIERATQVMLKVHYEGKAICGTFTAEVAETKVAQVTMYSRENEHPL 60

Query: 132 QCIMEQ 137
            C MEQ
Sbjct: 61  LCTMEQ 66


>gi|326563659|gb|EGE13911.1| ATP-dependent Clp protease adaptor protein ClpS [Moraxella
           catarrhalis 103P14B1]
 gi|326573267|gb|EGE23235.1| ATP-dependent Clp protease adaptor protein ClpS [Moraxella
           catarrhalis 101P30B1]
          Length = 112

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 58/94 (61%), Gaps = 2/94 (2%)

Query: 45  DSEVRFSSKVRV--PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
           D++    +K++V  PKLY V++ NDNYT M+FV++VL   F  + + A  +M+++H  G 
Sbjct: 17  DTDAITETKIQVKQPKLYTVIMYNDNYTTMDFVVYVLVEIFQHNIDKAYQLMMQIHELGQ 76

Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
               +  Y++AEMKV++V   + Q  YPL   +E
Sbjct: 77  AAVALLPYDLAEMKVDEVTALAEQESYPLLTTIE 110


>gi|317010313|gb|ADU84060.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
           pylori SouthAfrica7]
          Length = 91

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 54/85 (63%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           K+  P + +V+++ND+ T  EFVI  L++FF K  + AK +ML +H  G G CGVY Y+I
Sbjct: 5   KIPTPTMSQVIMLNDSITTAEFVISALRDFFDKPLKEAKELMLSIHRDGEGVCGVYPYDI 64

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           A  +   V + +R   +PL+ ++E+
Sbjct: 65  ARYRAACVKDKARALNFPLRLLVEE 89


>gi|71066054|ref|YP_264781.1| ATP-dependent Clp protease adapter protein [Psychrobacter arcticus
           273-4]
 gi|71039039|gb|AAZ19347.1| probable ATP-dependent Clp protease adapter protein [Psychrobacter
           arcticus 273-4]
          Length = 138

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 63/107 (58%), Gaps = 1/107 (0%)

Query: 31  RMNKKGIAEFDNCLDSEVRFS-SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
           R+ + G  + +    ++V  +  +V  P +Y V++ NDNYTPMEFV+++LQ+ F    ++
Sbjct: 27  RLAQVGEPDGETTPQADVLVAEPEVAKPPMYAVVMYNDNYTPMEFVVYILQSEFRHSMDS 86

Query: 90  AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
           A  IML +H+   G  G+Y  +IAE K  +V + + +  YPL   +E
Sbjct: 87  AVEIMLTIHNSSKGIAGIYPKDIAETKAKKVNSLAHREGYPLLTQIE 133


>gi|84501067|ref|ZP_00999302.1| ATP-dependent Clp protease adaptor protein ClpS [Oceanicola
           batsensis HTCC2597]
 gi|84391134|gb|EAQ03552.1| ATP-dependent Clp protease adaptor protein ClpS [Oceanicola
           batsensis HTCC2597]
          Length = 101

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 51/99 (51%)

Query: 40  FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
            D   +  V  +++   PKLY+V+L+ND++TP  FV+ VLQ  F      A+ +M+  H 
Sbjct: 2   LDRAPEGTVETATRSERPKLYKVILLNDDFTPRRFVVKVLQGVFRMTEGEAEAVMMTAHR 61

Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           +G     V+  EIAE K  +     R   +PL    E++
Sbjct: 62  RGACVVAVFTREIAEQKAREATELGRHAGFPLTFTTERE 100


>gi|83633194|gb|ABC29161.1| uncharacterized conserved protein [Hahella chejuensis KCTC 2396]
          Length = 76

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 47/74 (63%)

Query: 64  LVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNY 123
           ++ND+YTPM+FV+ VL  FF      A  +ML VH QG   CGV+  +IAE K  QV  Y
Sbjct: 1   MLNDDYTPMDFVVEVLIRFFNMSEPKATQVMLAVHTQGRAVCGVFTRDIAESKAAQVNQY 60

Query: 124 SRQHQYPLQCIMEQ 137
           S + ++PL C +E+
Sbjct: 61  SSECEHPLLCEIER 74


>gi|254519310|ref|ZP_05131366.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium sp.
           7_2_43FAA]
 gi|226913059|gb|EEH98260.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium sp.
           7_2_43FAA]
          Length = 99

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 54/86 (62%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           K++ PK + V++ ND++T MEFV+ +L + F +  E A  IM++VH  G G  G+Y Y+I
Sbjct: 14  KIKKPKKFIVIMHNDDFTTMEFVVAILSDIFNRSIEEANKIMMEVHKNGKGVAGIYPYDI 73

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQK 138
           A  K  + M  +++  +P +  +E++
Sbjct: 74  AISKATKAMTLAKEEGFPFKLTVEEE 99


>gi|148925993|ref|ZP_01809679.1| hypothetical protein Cj8486_0964c [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145845472|gb|EDK22564.1| hypothetical protein Cj8486_0964c [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 82

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 48/69 (69%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           +K+  PK+Y+V+L+ND+ T M+FVI +L N F+++ E A   ML++HH G G CG+Y  E
Sbjct: 10  TKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQNLEKASQTMLEIHHNGSGICGIYTQE 69

Query: 112 IAEMKVNQV 120
           IA  K  +V
Sbjct: 70  IALSKQKKV 78


>gi|317011887|gb|ADU82495.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
           pylori Lithuania75]
          Length = 91

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           +  P + +V++V+D  T  EFVI  L++FF K  E AK +   +H  G G CGVY Y+IA
Sbjct: 6   IPTPTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGCGVCGVYPYDIA 65

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
             +V  V + +R+   PL+ ++E+
Sbjct: 66  RHRVAWVRDKARELDLPLKLLVEE 89


>gi|207092784|ref|ZP_03240571.1| hypothetical protein HpylHP_08043 [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 91

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 51/84 (60%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           +  P + +V++V+D  T  EFVI  L++FF K  E AK +   +H  G G CGVY Y+IA
Sbjct: 6   IPTPTMAQVIMVDDPITTAEFVISALRDFFDKSLEEAKALTSSIHRDGCGVCGVYPYDIA 65

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
             +   V + +R  ++PL+ ++E+
Sbjct: 66  RHRAAWVKDKARALEFPLKLLVEE 89


>gi|315926527|gb|EFV05908.1| ATP-dependent Clp protease adaptor protein ClpS family protein
           [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 106

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 45/62 (72%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           +K+  PK+Y+V+L+ND+ T M+FVI +L N F+++ E A   ML++HH G G CG+Y  E
Sbjct: 10  TKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQNLEKASQTMLEIHHNGSGICGIYTQE 69

Query: 112 IA 113
           IA
Sbjct: 70  IA 71


>gi|182419260|ref|ZP_02950513.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
           butyricum 5521]
 gi|237667653|ref|ZP_04527637.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182376900|gb|EDT74471.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
           butyricum 5521]
 gi|237656001|gb|EEP53557.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 99

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 49/78 (62%)

Query: 60  YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQ 119
           Y+V++ ND+YT MEFVI +L N F K    A+ IML VH +G G  G+Y+Y+IA  KV  
Sbjct: 21  YKVIMHNDDYTTMEFVIKILVNIFNKSFIDAEKIMLDVHKKGRGVAGIYSYDIAITKVAT 80

Query: 120 VMNYSRQHQYPLQCIMEQ 137
            M+ ++   +P +   E+
Sbjct: 81  AMSMAKSEGFPFKLTTEE 98


>gi|189463818|ref|ZP_03012603.1| hypothetical protein BACINT_00151 [Bacteroides intestinalis DSM
           17393]
 gi|189438768|gb|EDV07753.1| hypothetical protein BACINT_00151 [Bacteroides intestinalis DSM
           17393]
          Length = 102

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 52/84 (61%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           + +R P+ ++V++ ND++T MEFV+ +L   F+K    A+ +ML+VH       G+Y Y+
Sbjct: 14  TDLREPQHFKVIIFNDDFTTMEFVVKILTTIFFKSAAEAETLMLQVHKSQSAVVGIYTYD 73

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIM 135
           IA+ KV +    +R+  +PL+  +
Sbjct: 74  IAQSKVQKATRMAREENFPLRLTV 97


>gi|208434005|ref|YP_002265671.1| hypothetical protein HPG27_29 [Helicobacter pylori G27]
 gi|208431934|gb|ACI26805.1| hypothetical protein HPG27_29 [Helicobacter pylori G27]
          Length = 91

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 51/84 (60%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           +  P + +V++V+D  T  EFVI  L++FF K  E AK +   +H  G G CGVY Y+IA
Sbjct: 6   IPTPTMAQVIMVDDPITTAEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVYPYDIA 65

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
             +   V + +R  ++PL+ ++E+
Sbjct: 66  RHRAAWVRDKARALEFPLKLLVEE 89


>gi|109946679|ref|YP_663907.1| hypothetical protein Hac_0045 [Helicobacter acinonychis str.
           Sheeba]
 gi|109713900|emb|CAJ98908.1| conserved hypothetical protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 91

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 54/85 (63%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           K+ +P +  V+++ND  T  EFVI  L++ F K  E A+ +ML +HH G G CGVY YEI
Sbjct: 5   KIPIPTMSGVIMLNDPVTKAEFVISTLRDVFDKSLEEAQDLMLSIHHNGDGVCGVYPYEI 64

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           A  K   V + +R  ++PL+ ++++
Sbjct: 65  AIYKAVCVRDKARALKFPLRLMVQE 89


>gi|210134229|ref|YP_002300668.1| ATP-dependent clp protease adapter protein ClpS [Helicobacter
           pylori P12]
 gi|210132197|gb|ACJ07188.1| ATP-dependent clp protease adapter protein ClpS [Helicobacter
           pylori P12]
          Length = 91

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 51/84 (60%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           + +P + +V++V+D  T  EFVI  L++FF K  E AK +   +H  G G CGVY Y+IA
Sbjct: 6   IPIPTMAQVIMVDDPITTAEFVISALRDFFDKSLEEAKALTSSIHRDGCGVCGVYPYDIA 65

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
             +   V + +R+   PL+ ++E+
Sbjct: 66  RHRAAWVRDKARELDLPLKLLVEE 89


>gi|160888888|ref|ZP_02069891.1| hypothetical protein BACUNI_01308 [Bacteroides uniformis ATCC 8492]
 gi|156861787|gb|EDO55218.1| hypothetical protein BACUNI_01308 [Bacteroides uniformis ATCC 8492]
          Length = 103

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 50/83 (60%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           ++R P+ ++V + ND++T MEFV+ VL   FYK    A+ +ML+VH       G+Y+Y+I
Sbjct: 15  ELREPRRFKVTIYNDDFTTMEFVVKVLTTVFYKSSAEAETLMLQVHKSNSAVVGIYSYDI 74

Query: 113 AEMKVNQVMNYSRQHQYPLQCIM 135
           A  KV +    +R   +PL+  +
Sbjct: 75  AHSKVQKATRMARNEGFPLRLTV 97


>gi|224535859|ref|ZP_03676398.1| hypothetical protein BACCELL_00723 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522582|gb|EEF91687.1| hypothetical protein BACCELL_00723 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 102

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 52/84 (61%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           + +R P+ ++V++ ND++T MEFV+ +L   F+K    A+ +ML+VH       G+Y Y+
Sbjct: 14  TDLREPQHFKVIIYNDDFTTMEFVVKILTTIFFKSAAEAETLMLQVHKSQSAVVGIYTYD 73

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIM 135
           IA+ KV +    +R+  +PL+  +
Sbjct: 74  IAQSKVQKATRMAREENFPLRLTI 97


>gi|308182216|ref|YP_003926343.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
           pylori PeCan4]
 gi|308064401|gb|ADO06293.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
           pylori PeCan4]
          Length = 91

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 50/84 (59%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           +  P + +V++V+D  T  EFVI  L++FF K  E AK +   +H  G G CGVY Y+IA
Sbjct: 6   IPTPTMAQVIMVDDPITTAEFVISALRDFFDKSLEEAKALTSSIHRDGCGVCGVYPYDIA 65

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
             +   V + +R+   PL+ ++E+
Sbjct: 66  RHRAAWVRDKARELDLPLKLLVEE 89


>gi|115523083|ref|YP_779994.1| ATP-dependent Clp protease adaptor [Rhodopseudomonas palustris
           BisA53]
 gi|115517030|gb|ABJ05014.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris BisA53]
          Length = 101

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 48/80 (60%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           +KV  PKL++V+LVND+YTP EFV+ VL+  F    + A  +M+  H +G+    V+  +
Sbjct: 14  TKVERPKLHKVILVNDDYTPREFVVRVLKAEFRMTEDQAHKVMITAHQRGVCVVAVFTRD 73

Query: 112 IAEMKVNQVMNYSRQHQYPL 131
           IAE K  +  +  R   YPL
Sbjct: 74  IAETKATRATDAGRAKGYPL 93


>gi|108562455|ref|YP_626771.1| hypothetical protein HPAG1_0030 [Helicobacter pylori HPAG1]
 gi|107836228|gb|ABF84097.1| hypothetical protein HPAG1_0030 [Helicobacter pylori HPAG1]
          Length = 91

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 50/84 (59%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           +  P + +V++V+D  T  EFVI  L++FF K  E AK +   +H  G G CGVY Y+IA
Sbjct: 6   IPTPTMAQVIMVDDPITTAEFVISALKDFFDKSLEEAKALTSSIHRDGCGVCGVYPYDIA 65

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
             +   V + +R+   PL+ ++E+
Sbjct: 66  RHRAAWVRDKARELDLPLKLLVEE 89


>gi|316932749|ref|YP_004107731.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris DX-1]
 gi|315600463|gb|ADU42998.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris DX-1]
          Length = 101

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 50/88 (56%)

Query: 44  LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIG 103
           L  + +   KV  PKL++V+LVND+YTP EFV+ VL+       + A  +ML  H +G+ 
Sbjct: 6   LKPKTKAKIKVERPKLHKVILVNDDYTPREFVVSVLKAELRMTEDQAYKVMLTAHQRGVC 65

Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPL 131
             GV+  ++AE K  +  +  R   YPL
Sbjct: 66  VVGVFTKDVAETKATRATDAGRAKGYPL 93


>gi|317008709|gb|ADU79289.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
           pylori India7]
          Length = 91

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           +  P + +V++V+D  T  EFVI  L++FF K  E AK +   +H  G G CGVY Y+IA
Sbjct: 6   IPTPTMVQVIMVDDPITTAEFVISALRDFFDKSLEEAKDLTSSIHRDGCGVCGVYPYDIA 65

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
             +V  V + +R+   PL+ ++E+
Sbjct: 66  RHRVAWVRDKARELDLPLKLLVEE 89


>gi|288929195|ref|ZP_06423040.1| ATP-dependent Clp protease adaptor protein ClpS [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288329297|gb|EFC67883.1| ATP-dependent Clp protease adaptor protein ClpS [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 109

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 53/84 (63%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R  + +R P+ Y+VL+ ND++T M+FV+ +L+  F+K    A+ +ML VH       GVY
Sbjct: 20  RIRTNLREPRKYKVLIHNDDFTTMDFVVMILKVVFFKSETEAEALMLAVHRSDKAVVGVY 79

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQ 132
           +Y++A  KV++  + +R   YPL+
Sbjct: 80  SYDVAMSKVSKATDMARHAGYPLR 103


>gi|90422655|ref|YP_531025.1| ATP-dependent Clp protease adaptor [Rhodopseudomonas palustris
           BisB18]
 gi|90104669|gb|ABD86706.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris BisB18]
          Length = 105

 Score = 70.5 bits (171), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 47/84 (55%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            +   K   PKL++V+LVND+YTP EFV+ VLQ  F    + A  +M+  H +G+    V
Sbjct: 14  TKVKPKTERPKLHKVILVNDDYTPREFVVRVLQAEFRMTEDQAHKVMITAHQRGVCVVAV 73

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPL 131
           +  ++AE K  +  +  R   YPL
Sbjct: 74  FTKDVAETKATRATDAGRAKGYPL 97


>gi|317181079|dbj|BAJ58865.1| hypothetical protein HPF32_1283 [Helicobacter pylori F32]
          Length = 91

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 50/84 (59%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           +  P + +V++V+D  T  EFVI  L++FF K  E AK +   +H  G G CGVY Y+IA
Sbjct: 6   IPTPTMAQVIMVDDPITTAEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVYPYDIA 65

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
             +   V + +R+   PL+ ++E+
Sbjct: 66  RHRAAWVRDKARELDLPLKLLVEE 89


>gi|254778767|ref|YP_003056872.1| ATP-dependent Clp protease adaptor protein ClpS [Helicobacter
           pylori B38]
 gi|254000678|emb|CAX28587.1| ATP-dependent Clp protease adaptor protein ClpS [Helicobacter
           pylori B38]
          Length = 91

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 51/84 (60%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           +  P + +V++V+D  T  EFVI  L++FF K  E AK +   +H  G G CGVY Y+IA
Sbjct: 6   IPTPTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKDLTSSIHRDGEGVCGVYPYDIA 65

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
             +   V + +R  ++PL+ ++E+
Sbjct: 66  RHRAAWVKDKARALEFPLKLLVEE 89


>gi|218681500|ref|ZP_03529387.1| ATP-dependent Clp protease adaptor [Rhizobium etli CIAT 894]
          Length = 112

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 58/100 (58%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           +++ D  L  +++   K+  PKLY+V+LVND+YTP EFVI +L++ F    ET   +M+ 
Sbjct: 1   MSDNDVALKPKIKVKPKLDKPKLYKVILVNDDYTPREFVIVILKSVFRMSEETGYKVMMT 60

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
            H  G     V A +IAE K  + ++ +++  +PL    E
Sbjct: 61  AHKLGSCVVVVCARDIAETKAKEGIDLAKEMGFPLMFTTE 100


>gi|297379256|gb|ADI34143.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
           pylori v225d]
          Length = 91

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 51/84 (60%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           +  P + +V++V+D  T  EFVI  L++FF K  E A+ +   +H  G G CGVY Y+IA
Sbjct: 6   IPTPTMVQVIMVDDPITTAEFVISALRDFFDKSLEEAQALTSSIHRDGEGVCGVYPYDIA 65

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
             +V  V + +R+   PL+ ++E+
Sbjct: 66  RHRVAWVRDKARELDLPLKLLVEE 89


>gi|15644665|ref|NP_206834.1| hypothetical protein HP0032 [Helicobacter pylori 26695]
 gi|2495581|sp|P56066|CLPS_HELPY RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|2313107|gb|AAD07101.1| conserved hypothetical protein [Helicobacter pylori 26695]
          Length = 91

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 51/84 (60%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           +  P + +V++V+D  T  EFVI  L++FF K  E AK +   +H  G G CGVY Y+IA
Sbjct: 6   IPTPTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVYPYDIA 65

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
             +   V + ++  ++PL+ ++E+
Sbjct: 66  RHRAAWVRDKAKALEFPLKLLVEE 89


>gi|270293657|ref|ZP_06199859.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317479379|ref|ZP_07938513.1| ATP-dependent Clp protease adaptor protein ClpS [Bacteroides sp.
           4_1_36]
 gi|270275124|gb|EFA20984.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316904453|gb|EFV26273.1| ATP-dependent Clp protease adaptor protein ClpS [Bacteroides sp.
           4_1_36]
          Length = 103

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 50/83 (60%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           ++R P+ ++V + ND++T MEFV+ VL   FYK    A+ +ML+VH       G+Y+Y+I
Sbjct: 15  ELREPRRFKVTIYNDDFTTMEFVVKVLTTVFYKSSVEAETLMLQVHKSNSAVVGIYSYDI 74

Query: 113 AEMKVNQVMNYSRQHQYPLQCIM 135
           A  KV +    +R   +PL+  +
Sbjct: 75  AHSKVQKATRMARNEGFPLRLTV 97


>gi|217031776|ref|ZP_03437280.1| hypothetical protein HPB128_155g89 [Helicobacter pylori B128]
 gi|298737083|ref|YP_003729613.1| ATP-dependent Clp protease adaptor protein ClpS [Helicobacter
           pylori B8]
 gi|216946623|gb|EEC25223.1| hypothetical protein HPB128_155g89 [Helicobacter pylori B128]
 gi|298356277|emb|CBI67149.1| ATP-dependent Clp protease adaptor protein ClpS [Helicobacter
           pylori B8]
          Length = 91

 Score = 70.1 bits (170), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 50/84 (59%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           +  P + +V++V+D  T  EFVI  L++FF K  E  K +   +H  G G CGVY Y+IA
Sbjct: 6   IPTPTMAQVIMVDDPITTAEFVISALKDFFDKSLEEVKALTSSIHRDGCGVCGVYPYDIA 65

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
             +   V + +R+  +PL+ ++E+
Sbjct: 66  RHRAAWVRDKARELDFPLKLLVEE 89


>gi|110634479|ref|YP_674687.1| ATP-dependent Clp protease adaptor [Mesorhizobium sp. BNC1]
 gi|110285463|gb|ABG63522.1| ATP-dependent Clp protease adaptor protein ClpS [Chelativorans sp.
           BNC1]
          Length = 101

 Score = 70.1 bits (170), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 51/91 (56%)

Query: 41  DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
           D  L    +   KV  PKL++V+LVND++TP EFV+ VL+  F  + + A  +M+  H +
Sbjct: 3   DIVLKPRTKTKPKVDKPKLHKVILVNDDFTPREFVVRVLKAEFRLNQDQAYRVMITAHRR 62

Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPL 131
           G     V+  +IAE K  +  +  R+  YPL
Sbjct: 63  GTCVVAVFPKDIAETKATRATDAGRKAGYPL 93


>gi|237750929|ref|ZP_04581409.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter bilis
           ATCC 43879]
 gi|229373374|gb|EEO23765.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter bilis
           ATCC 43879]
          Length = 107

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 55/97 (56%)

Query: 39  EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           E+ +    E     ++  P++  ++L+ND+YT ++FVI +L   F K    A+ I   VH
Sbjct: 7   EYSDSAHFETLHEVEIAQPRMQEIILLNDDYTSVDFVITLLMRVFNKSMLDAQTITQFVH 66

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIM 135
           + G G CGVY Y+IAE+K +   N+ R    PL+ ++
Sbjct: 67  NTGEGSCGVYPYDIAELKFSMATNFIRDSGMPLRLVL 103


>gi|329961966|ref|ZP_08299977.1| ATP-dependent Clp protease adaptor protein ClpS [Bacteroides fluxus
           YIT 12057]
 gi|328530614|gb|EGF57472.1| ATP-dependent Clp protease adaptor protein ClpS [Bacteroides fluxus
           YIT 12057]
          Length = 102

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 51/87 (58%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R  + +R P+ ++V + ND++T MEFV+ +L   F+K    A+ +M+KVH       G+Y
Sbjct: 11  RERTDLREPRRFKVTIYNDDFTTMEFVVKILTAVFFKSTAEAEALMMKVHESQSAVVGIY 70

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIM 135
            Y+IA+ KV +    +R   +PL+  +
Sbjct: 71  PYDIAQSKVQKATRMARNEGFPLRLTV 97


>gi|86748339|ref|YP_484835.1| ATP-dependent Clp protease adaptor [Rhodopseudomonas palustris
           HaA2]
 gi|86571367|gb|ABD05924.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris HaA2]
          Length = 101

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 48/80 (60%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
            K+  PKLY+V+LVND++TP +FV+ +L++ F    E A  +ML  H +G+    V+  +
Sbjct: 14  PKLERPKLYKVILVNDDFTPRDFVVMILKSEFRMTEEQAYKVMLTAHQRGVCVVAVFTKD 73

Query: 112 IAEMKVNQVMNYSRQHQYPL 131
           IAE K  +  +  R   YPL
Sbjct: 74  IAETKATRATDAGRAKGYPL 93


>gi|207110450|ref|ZP_03244612.1| hypothetical protein HpylH_15368 [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 82

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 47/79 (59%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           +  P + +V++V+D  T  EFVI  L++FF K  E AK +   +H  G G CGVY Y+IA
Sbjct: 4   IPTPTMAQVIMVDDPITTAEFVISALRDFFDKSLEEAKALTSSIHRDGCGVCGVYPYDIA 63

Query: 114 EMKVNQVMNYSRQHQYPLQ 132
             +   V + +R  ++PL+
Sbjct: 64  RHRAAWVKDKARALEFPLK 82


>gi|15966109|ref|NP_386462.1| ATP-dependent Clp protease adaptor [Sinorhizobium meliloti 1021]
 gi|21542319|sp|Q92N66|CLPS2_RHIME RecName: Full=ATP-dependent Clp protease adapter protein ClpS 2
 gi|15075379|emb|CAC46935.1| Putative ATP-dependent Clp protease adapter protein clpS 2
           [Sinorhizobium meliloti 1021]
          Length = 101

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 51/91 (56%)

Query: 41  DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
           DN + ++     K+  PKLY+VLLVND++TP EFV+ VL+  F    E    +M+  H  
Sbjct: 3   DNDVAAKRLTKPKLERPKLYKVLLVNDDFTPREFVVMVLKAVFRMSEEAGYRVMMTAHKM 62

Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPL 131
           GI    V A ++AE K  +  +  ++  +PL
Sbjct: 63  GISVVVVCAKDVAETKAKEATDLGKEAGFPL 93


>gi|308183832|ref|YP_003927965.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
           pylori SJM180]
 gi|308059752|gb|ADO01648.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
           pylori SJM180]
 gi|317013455|gb|ADU80891.1| ATP-dependent Clp protease adapter protein ClpS [Helicobacter
           pylori Gambia94/24]
          Length = 91

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 55/85 (64%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           ++  P + +V+++ND+ T  EF++  L++FF K  E A+ +ML +H  G G CGVY YEI
Sbjct: 5   QIPTPTMSQVIMLNDSITTAEFMVSALRDFFDKPLEEAQKLMLSIHRDGDGVCGVYPYEI 64

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           A  K   V + +R  ++PL+ ++++
Sbjct: 65  AIYKAVCVRDKARALRFPLRLMVQE 89


>gi|288870037|ref|ZP_06112699.2| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
           hathewayi DSM 13479]
 gi|288868668|gb|EFD00967.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
           hathewayi DSM 13479]
          Length = 111

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 53/84 (63%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           +++ PK Y+V++ ND++TPM+ V+ +L + F K++E A  IM+ VH       GVY+Y+I
Sbjct: 27  RLKQPKQYKVVMYNDDFTPMDVVVEILIDVFRKNYEEAVAIMMTVHKGQRAVVGVYSYDI 86

Query: 113 AEMKVNQVMNYSRQHQYPLQCIME 136
           A  K  + +  +R+  YP +  +E
Sbjct: 87  AMTKAARAVKIAREQGYPFRVEVE 110


>gi|260909905|ref|ZP_05916593.1| ATP-dependent Clp protease adaptor protein ClpS [Prevotella sp.
           oral taxon 472 str. F0295]
 gi|260635950|gb|EEX53952.1| ATP-dependent Clp protease adaptor protein ClpS [Prevotella sp.
           oral taxon 472 str. F0295]
          Length = 100

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 52/84 (61%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           R  + +R P+ Y+VL+ ND++T M+FV+ +L+  F+K    A+ +ML VH       GVY
Sbjct: 11  RVHTNIREPRKYKVLIHNDDFTTMDFVVMILKVVFFKTDTEAETLMLTVHRSSQAVVGVY 70

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQ 132
           +Y++A  KV +  + +R   +PL+
Sbjct: 71  SYDVALSKVKKATDMARHAGFPLR 94


>gi|261838675|gb|ACX98441.1| hypothetical protein KHP_1249 [Helicobacter pylori 51]
 gi|317179574|dbj|BAJ57362.1| hypothetical protein HPF30_1265 [Helicobacter pylori F30]
          Length = 91

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 50/84 (59%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           +  P + +V++V+D  T  EFVI  L++FF K  E A+ +   +H  G G CGVY Y+IA
Sbjct: 6   IPTPTMAQVIMVDDPITTAEFVISALRDFFDKSLEEAQALTSSIHRDGEGVCGVYPYDIA 65

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
             +   V + +R+   PL+ ++E+
Sbjct: 66  RHRAAWVRDKARELDLPLKLLVEE 89


>gi|317182602|dbj|BAJ60386.1| hypothetical protein HPF57_1312 [Helicobacter pylori F57]
          Length = 91

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 50/84 (59%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           +  P + +V++V+D  T  EFVI  L++FF K  E A+ +   +H  G G CGVY Y+IA
Sbjct: 6   IPTPTMVQVIMVDDPITTAEFVISALRDFFDKSLEEAQALTSSIHRDGEGVCGVYPYDIA 65

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
             +   V + +R+   PL+ ++E+
Sbjct: 66  RHRAAWVRDKARELDLPLKLLVEE 89


>gi|307636717|gb|ADN79167.1| ATP-dependent Clp protease adaptor protein [Helicobacter pylori
           908]
 gi|325995303|gb|ADZ50708.1| ATP-dependent Clp protease adaptor protein [Helicobacter pylori
           2018]
 gi|325996901|gb|ADZ49109.1| ATP-dependent Clp protease adaptor protein [Helicobacter pylori
           2017]
          Length = 89

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 55/85 (64%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           ++  P + +V+++ND+ T  EF++  L++FF K  E A+ +ML +H  G G CGVY YEI
Sbjct: 3   QIPTPTMSQVIMLNDSITTAEFMVSALRDFFDKPLEEAQELMLSIHRDGDGVCGVYPYEI 62

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           A  K   V + +R  ++PL+ ++++
Sbjct: 63  AIYKAVCVRDKARALRFPLRLMVQE 87


>gi|317178096|dbj|BAJ55885.1| hypothetical protein HPF16_1288 [Helicobacter pylori F16]
          Length = 93

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 50/84 (59%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           +  P + +V++V+D  T  EFVI  L++FF K  E A+ +   +H  G G CGVY Y+IA
Sbjct: 8   IPTPTMAQVIMVDDPITTAEFVISALRDFFDKSLEEAQALTSSIHRDGEGVCGVYPYDIA 67

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
             +   V + +R+   PL+ ++E+
Sbjct: 68  RHRAAWVRDKARELDLPLKLLVEE 91


>gi|150003219|ref|YP_001297963.1| hypothetical protein BVU_0633 [Bacteroides vulgatus ATCC 8482]
 gi|319640394|ref|ZP_07995118.1| hypothetical protein HMPREF9011_00715 [Bacteroides sp. 3_1_40A]
 gi|149931643|gb|ABR38341.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
 gi|317387997|gb|EFV68852.1| hypothetical protein HMPREF9011_00715 [Bacteroides sp. 3_1_40A]
          Length = 102

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 49/82 (59%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           +R P+ ++V + ND++T MEFV+ +L   F+K    A+ +M++VH       G+Y Y+IA
Sbjct: 16  LREPRRFKVTIFNDDFTTMEFVVKILTTVFFKSTMEAEALMMQVHKSESAVIGIYTYDIA 75

Query: 114 EMKVNQVMNYSRQHQYPLQCIM 135
             KV +    +R+  +PL+  +
Sbjct: 76  RSKVQKATRMAREEGFPLRLTV 97


>gi|308061334|gb|ADO03222.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
           pylori Cuz20]
          Length = 91

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 50/84 (59%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           +  P + +V++V+D  T  EFVI  L++FF K  E A+ +   +H  G G CGVY Y+IA
Sbjct: 6   IPTPTMAQVIMVDDPITTAEFVISALRDFFDKSLEEAQALTSSIHRDGEGICGVYPYDIA 65

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
             +   V + +R+   PL+ ++E+
Sbjct: 66  RHRAAWVRDKARELDLPLKLLVEE 89


>gi|254884992|ref|ZP_05257702.1| ATP-dependent Clp protease adapter protein clpS [Bacteroides sp.
           4_3_47FAA]
 gi|294776011|ref|ZP_06741507.1| ATP-dependent Clp protease adaptor protein ClpS [Bacteroides
           vulgatus PC510]
 gi|254837785|gb|EET18094.1| ATP-dependent Clp protease adapter protein clpS [Bacteroides sp.
           4_3_47FAA]
 gi|294450149|gb|EFG18653.1| ATP-dependent Clp protease adaptor protein ClpS [Bacteroides
           vulgatus PC510]
          Length = 107

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 49/82 (59%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           +R P+ ++V + ND++T MEFV+ +L   F+K    A+ +M++VH       G+Y Y+IA
Sbjct: 21  LREPRRFKVTIFNDDFTTMEFVVKILTTVFFKSTMEAEALMMQVHKSESAVIGIYTYDIA 80

Query: 114 EMKVNQVMNYSRQHQYPLQCIM 135
             KV +    +R+  +PL+  +
Sbjct: 81  RSKVQKATRMAREEGFPLRLTV 102


>gi|332180262|gb|AEE15950.1| ATP-dependent Clp protease adapter protein clpS [Treponema
           brennaborense DSM 12168]
          Length = 110

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 59/107 (55%)

Query: 31  RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
           + N   + E  N +++ V   +++  P+   V L+ND++T  EFV+ VL   F+K  E A
Sbjct: 3   KQNGNEVRETGNGVEAVVDSYNEIMEPRDCTVFLLNDDFTTKEFVVEVLTAIFHKGTEEA 62

Query: 91  KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             +M  VH QG    GVYA +IA       +  +R++ +PL+C +E+
Sbjct: 63  TVLMETVHMQGKAAVGVYARDIAVTLAALTVKTARENGFPLRCELEE 109


>gi|217034530|ref|ZP_03439940.1| hypothetical protein HP9810_897g15 [Helicobacter pylori 98-10]
 gi|216943011|gb|EEC22492.1| hypothetical protein HP9810_897g15 [Helicobacter pylori 98-10]
          Length = 97

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 50/84 (59%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           +  P + +V++V+D  T  EFVI  L++FF K  E A+ +   +H  G G CGVY Y+IA
Sbjct: 12  IPTPTMAQVIMVDDPITTAEFVISALRDFFDKSLEEAQALTSSIHRDGEGVCGVYPYDIA 71

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
             +   V + +R+   PL+ ++E+
Sbjct: 72  RHRAAWVRDKARELDLPLKLLVEE 95


>gi|188526842|ref|YP_001909529.1| hypothetical protein HPSH_00160 [Helicobacter pylori Shi470]
 gi|188143082|gb|ACD47499.1| hypothetical protein HPSH_00160 [Helicobacter pylori Shi470]
 gi|308062902|gb|ADO04789.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
           pylori Sat464]
          Length = 91

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 50/84 (59%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           +  P + +V++V+D  T  EFVI  L++FF K  E A+ +   +H  G G CGVY Y+IA
Sbjct: 6   IPTPTMAQVIMVDDPITTAEFVISALRDFFDKSLEEAQALTSNIHRDGEGVCGVYPYDIA 65

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
             +   V + +R+   PL+ ++E+
Sbjct: 66  RHRAAWVRDKARELDLPLKLLVEE 89


>gi|254456189|ref|ZP_05069618.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207083191|gb|EDZ60617.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 95

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 55/95 (57%)

Query: 44  LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIG 103
           +++  RF +    P LY V+ +ND  T +EF+I VL++ F K+H+ A  +  K+H +G G
Sbjct: 1   MNNSFRFETNFNNPILYEVIFLNDQVTTIEFIIRVLKHIFNKEHKHALKLTRKIHEEGYG 60

Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
             G Y YEIA  K  +    +R   +PL+ +++ K
Sbjct: 61  VVGSYIYEIAGQKELETSLMARDENFPLRVVIKIK 95


>gi|209550349|ref|YP_002282266.1| ATP-dependent Clp protease adaptor [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536105|gb|ACI56040.1| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 103

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 57/102 (55%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           +++ D  L  + +   K+  PKLY+V+LVND+YTP EFVI +L+  F    ET   +M+ 
Sbjct: 1   MSDNDVALKPKTKVKPKLDKPKLYKVILVNDDYTPREFVIVILKAVFRMSEETGYRVMMT 60

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            H  G     V A +IAE K  + ++ +++  +PL    E +
Sbjct: 61  AHKLGSCVVVVCARDIAETKAKEGIDLAKEMGFPLMFTTEPE 102


>gi|190892773|ref|YP_001979315.1| putative ATP-dependent Clp protease adaptor protein [Rhizobium etli
           CIAT 652]
 gi|190698052|gb|ACE92137.1| putative ATP-dependent Clp protease adaptor protein [Rhizobium etli
           CIAT 652]
          Length = 103

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 54/98 (55%)

Query: 41  DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
           D  L  + +   K+  PKLY+V+LVND+YTP EFVI +L+  F    ET   +M+  H  
Sbjct: 5   DVALKPKTKVEPKLDKPKLYKVILVNDDYTPREFVIAILKIVFRMSEETGYRVMMTAHKL 64

Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           G     V A +IAE K  + ++ +++  +PL    E +
Sbjct: 65  GSCVVVVCAKDIAETKAKEGIDLAKEMGFPLMFTTEPE 102


>gi|237711936|ref|ZP_04542417.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237725805|ref|ZP_04556286.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265753171|ref|ZP_06088740.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|229435613|gb|EEO45690.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229454631|gb|EEO60352.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263236357|gb|EEZ21852.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 102

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 48/79 (60%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           P+ ++V++ ND++T MEFV+ +L   F+K    A+ +M++VH       G+Y Y+IA  K
Sbjct: 19  PRRFKVIIFNDDFTTMEFVVKILTTVFFKSTMEAEALMMQVHKSESAVVGIYTYDIARSK 78

Query: 117 VNQVMNYSRQHQYPLQCIM 135
           V +    +R+  +PL+  +
Sbjct: 79  VQKATRMAREEGFPLRLTV 97


>gi|261840072|gb|ACX99837.1| ATP-dependent Clp protease adaptor protein ClpS [Helicobacter
           pylori 52]
          Length = 91

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 49/84 (58%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           +  P + +V++V+D  T  EFVI  L++FF K  E A+ +   +H  G G CGVY Y+IA
Sbjct: 6   IPTPTMAQVIMVDDPITTAEFVISALRDFFDKSLEEAQALTSSIHRDGEGVCGVYPYDIA 65

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
             +   V + +R+   PL+  +E+
Sbjct: 66  RHRAAWVRDKARELDLPLKLWVEE 89


>gi|212691640|ref|ZP_03299768.1| hypothetical protein BACDOR_01135 [Bacteroides dorei DSM 17855]
 gi|212665829|gb|EEB26401.1| hypothetical protein BACDOR_01135 [Bacteroides dorei DSM 17855]
          Length = 107

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 48/79 (60%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           P+ ++V++ ND++T MEFV+ +L   F+K    A+ +M++VH       G+Y Y+IA  K
Sbjct: 24  PRRFKVIIFNDDFTTMEFVVKILTTVFFKSTMEAEALMIQVHKSESAVVGIYTYDIARSK 83

Query: 117 VNQVMNYSRQHQYPLQCIM 135
           V +    +R+  +PL+  +
Sbjct: 84  VQKATRMAREEGFPLRLTV 102


>gi|300726156|ref|ZP_07059613.1| ATP-dependent Clp protease adaptor protein ClpS [Prevotella
           bryantii B14]
 gi|299776626|gb|EFI73179.1| ATP-dependent Clp protease adaptor protein ClpS [Prevotella
           bryantii B14]
          Length = 98

 Score = 67.4 bits (163), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 55/92 (59%)

Query: 45  DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
           +S ++   K++ P+ Y+V+  ND+ T M+FVI VL   F+K ++ A+ +M+KVH  G   
Sbjct: 5   NSNIKERIKLKEPRRYQVIFFNDDVTTMDFVIEVLTTVFHKAYQEAEELMMKVHLNGSAV 64

Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
            GVY+Y+IA  K       + +  +PL+  M+
Sbjct: 65  VGVYSYDIALTKTTNASEMAHKAGFPLRIEMQ 96


>gi|218460642|ref|ZP_03500733.1| ATP-dependent Clp protease adaptor [Rhizobium etli Kim 5]
 gi|218506911|ref|ZP_03504789.1| ATP-dependent Clp protease adaptor [Rhizobium etli Brasil 5]
          Length = 107

 Score = 67.4 bits (163), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 57/102 (55%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           +++ D  L  + +   K+  PKLY+V+LVND+YTP EFVI +L+  F    ET   +M+ 
Sbjct: 5   MSDNDVALKPKTKVKPKLDKPKLYKVILVNDDYTPREFVIVILKVVFRMSEETGYRVMMT 64

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            H  G     V A +IAE K  + ++ +++  +PL    E +
Sbjct: 65  AHKLGSCVVVVCAKDIAETKAKEGIDLAKEMGFPLMFTTEPE 106


>gi|315587247|gb|ADU41628.1| ATP-dependent Clp protease adaptor protein ClpS [Helicobacter
           pylori 35A]
          Length = 91

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 50/84 (59%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           +  P + +V++V+D  T  EFVI  L++FF K  E A+ +   +H  G G CGVY Y+IA
Sbjct: 6   IPTPTMAQVIMVDDPITTAEFVISALRDFFDKSLEEAQALTSSIHRDGEGVCGVYPYDIA 65

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
             +   V + +++   PL+ ++E+
Sbjct: 66  RHRAAWVRDKAKELDLPLRLLVEE 89


>gi|146339195|ref|YP_001204243.1| ATP-dependent Clp protease adaptor [Bradyrhizobium sp. ORS278]
 gi|146192001|emb|CAL76006.1| ATP-dependent Clp protease adaptor protein clpS 2 [Bradyrhizobium
           sp. ORS278]
          Length = 115

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 53/98 (54%)

Query: 41  DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
           D     + +  +KV  P+LY+V+LVND++TP +FV+ +L+  F    + A  +M+  H  
Sbjct: 17  DAVTKPKTKVRTKVERPRLYKVILVNDDFTPRDFVVMILKAEFRMTEDQAYKVMITAHKL 76

Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           G+    V+  ++AE K  +  +  R   YPL   +E +
Sbjct: 77  GVCVVAVFTKDVAETKATRATDAGRAKGYPLLFTIEPE 114


>gi|218674100|ref|ZP_03523769.1| ATP-dependent Clp protease adaptor [Rhizobium etli GR56]
 gi|327188355|gb|EGE55572.1| ATP-dependent Clp protease adaptor [Rhizobium etli CNPAF512]
          Length = 103

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 57/102 (55%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           +++ D  L  + +   K+  PKLY+V+LVND+YTP EFVI +L+  F    ET   +M+ 
Sbjct: 1   MSDNDVALKPKTKVKPKLDKPKLYKVILVNDDYTPREFVIVILKVVFRMSEETGYRVMMT 60

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            H  G     V A +IAE K  + ++ +++  +PL    E +
Sbjct: 61  AHKLGSCVVVVCAKDIAETKAKEGIDLAKEMGFPLMFTTEPE 102


>gi|307305663|ref|ZP_07585410.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
           meliloti BL225C]
 gi|307317666|ref|ZP_07597105.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
           meliloti AK83]
 gi|306896824|gb|EFN27571.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
           meliloti AK83]
 gi|306902366|gb|EFN32962.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
           meliloti BL225C]
          Length = 101

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 50/91 (54%)

Query: 41  DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
           DN + ++     K+  PKLY+VLLVND++TP EFV+ VL+  F    E    +M+  H  
Sbjct: 3   DNDVAAKRLTKPKLERPKLYKVLLVNDDFTPREFVVMVLKAVFRMSEEAGYRVMMTAHKM 62

Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPL 131
           G     V A ++AE K  +  +  ++  +PL
Sbjct: 63  GTSVVVVCAKDVAETKAKEATDLGKEAGFPL 93


>gi|148253958|ref|YP_001238543.1| ATP-dependent Clp protease adaptor [Bradyrhizobium sp. BTAi1]
 gi|146406131|gb|ABQ34637.1| ATP-dependent Clp protease adaptor protein clpS 2 [Bradyrhizobium
           sp. BTAi1]
          Length = 115

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 53/98 (54%)

Query: 41  DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
           D     + +  +KV  P+LY+V+LVND++TP +FV+ +L++ F    + A  +M+  H  
Sbjct: 17  DAVTKPKTKVRTKVERPRLYKVILVNDDFTPRDFVVMILKSEFRMTEDQAYKVMITAHKL 76

Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           G+    V+  ++AE K  +  +  R   YPL    E +
Sbjct: 77  GVCVVAVFTKDVAETKATRATDAGRAKGYPLLFTTEPE 114


>gi|86358632|ref|YP_470524.1| ATP-dependent Clp protease adaptor [Rhizobium etli CFN 42]
 gi|86282734|gb|ABC91797.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 103

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 57/102 (55%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           +++ D  L  + +   K+  PKLY+V+LVND+YTP EFVI +L+  F    ET   +M+ 
Sbjct: 1   MSDNDVALKPKTKVRPKLDKPKLYKVILVNDDYTPREFVIVILKVVFRMSEETGYRVMMT 60

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            H  G     V A +IAE K  + ++ +++  +PL    E +
Sbjct: 61  AHKLGSCVVVVCAKDIAETKAKEGIDLAKEMGFPLMFTTEPE 102


>gi|260462566|ref|ZP_05810773.1| ATP-dependent Clp protease adaptor protein ClpS [Mesorhizobium
           opportunistum WSM2075]
 gi|259031762|gb|EEW33031.1| ATP-dependent Clp protease adaptor protein ClpS [Mesorhizobium
           opportunistum WSM2075]
          Length = 101

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 45/75 (60%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PKLY+V+L+ND++TP EFV+ VL+  F    + A  IM+  H +G+    V+  ++AE K
Sbjct: 19  PKLYKVILINDDFTPREFVVTVLKGEFKLSEDQAHRIMITAHQRGVCVVAVFTRDVAETK 78

Query: 117 VNQVMNYSRQHQYPL 131
             +  +  +   YPL
Sbjct: 79  ATRATDAGKAKGYPL 93


>gi|319781851|ref|YP_004141327.1| ATP-dependent Clp protease adaptor protein ClpS [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317167739|gb|ADV11277.1| ATP-dependent Clp protease adaptor protein ClpS [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 101

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 49/89 (55%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            +   +V  PKLY+V+L+ND++TP EFV+ VL+  F    + A  +M+  H +G+    V
Sbjct: 10  TQIKPQVERPKLYKVILINDDFTPREFVVTVLKGEFKLSEDQAHRVMITAHRRGVCVVAV 69

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
           +  ++AE K  +  +  +   YPL    E
Sbjct: 70  FTKDVAETKATRATDAGKAKGYPLMFTTE 98


>gi|91975795|ref|YP_568454.1| ATP-dependent Clp protease adaptor [Rhodopseudomonas palustris
           BisB5]
 gi|91682251|gb|ABE38553.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris BisB5]
          Length = 101

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 48/84 (57%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            +   K+  PKL++V+LVND++TP EFV+ +L+  F    E A  +ML  H +G+    V
Sbjct: 10  TKAKPKLERPKLHKVILVNDDFTPREFVVMILKAEFRMTEEQAYKVMLTAHQRGVCVVAV 69

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPL 131
           +  ++AE K  +  +  R   YPL
Sbjct: 70  FTKDVAETKATRATDAGRVKGYPL 93


>gi|241205734|ref|YP_002976830.1| ATP-dependent Clp protease adaptor [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859624|gb|ACS57291.1| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 103

 Score = 66.6 bits (161), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           +++ D  L  + +   K+  PKLY+V+LVND+YTP E VI +L+  F    ET   +M+ 
Sbjct: 1   MSDNDIALKPKTKVKPKLDKPKLYKVILVNDDYTPRELVIMILKAVFRMSEETGYRVMMT 60

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPL 131
            H  G     V A +IAE K  + ++ ++   YPL
Sbjct: 61  AHKLGSCVVVVCAKDIAETKAKEGIDLAKGMGYPL 95


>gi|13472441|ref|NP_104008.1| ATP-dependent Clp protease adaptor [Mesorhizobium loti MAFF303099]
 gi|21542322|sp|Q98HS2|CLPS2_RHILO RecName: Full=ATP-dependent Clp protease adapter protein ClpS 2
 gi|14023187|dbj|BAB49794.1| mll2736 [Mesorhizobium loti MAFF303099]
          Length = 101

 Score = 66.6 bits (161), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 45/75 (60%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PKLY+V+L+ND++TP EFV+ VL+  F    + A  IM+  H +G+    V+  ++AE K
Sbjct: 19  PKLYKVILINDDFTPREFVVTVLKGEFKLSEDQAHRIMITAHRRGVCVVAVFTKDVAETK 78

Query: 117 VNQVMNYSRQHQYPL 131
             +  +  +   YPL
Sbjct: 79  ATRATDAGKAKGYPL 93


>gi|227822866|ref|YP_002826838.1| ATP-dependent Clp protease adaptor [Sinorhizobium fredii NGR234]
 gi|227341867|gb|ACP26085.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
           fredii NGR234]
          Length = 103

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 45  DSEVRFSSKVRV------PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           D+EV    K RV      P+LY+V+LVND+YTP +FV+ VL+  F    E    +M+  H
Sbjct: 3   DNEVAPKRKTRVKPKLERPRLYKVILVNDDYTPRDFVVMVLKAIFRMSEEAGYRVMMTAH 62

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
             G     V A +IAE K  +  +  ++  +PL    E +
Sbjct: 63  KLGTSVVVVCARDIAETKAKEATDLGKEAGFPLMFTTEPE 102


>gi|218661878|ref|ZP_03517808.1| ATP-dependent Clp protease adaptor [Rhizobium etli IE4771]
          Length = 107

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 57/102 (55%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           +++ D  L  + +   K+  PKLY+V+LVND+YTP +FVI +L+  F    ET   +M+ 
Sbjct: 5   MSDNDVALKPKTKVKPKLDKPKLYKVILVNDDYTPRDFVIVILKVVFRMSEETGYRVMMT 64

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            H  G     V A +IAE K  + ++ +++  +PL    E +
Sbjct: 65  AHKLGSCVVVVCAKDIAETKAKEGIDLAKEMGFPLMFTTEPE 106


>gi|222086600|ref|YP_002545134.1| hypothetical protein Arad_3194 [Agrobacterium radiobacter K84]
 gi|221724048|gb|ACM27204.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 103

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 47/85 (55%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           V  PKLY+++LVND+YTP EFVI VLQ  F    E    +M+  H  G     V A +IA
Sbjct: 18  VERPKLYKIILVNDDYTPREFVIMVLQAVFRMSEEAGYRVMMTAHKLGSCVVMVCARDIA 77

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQK 138
           E K  + ++ ++   +PL    E +
Sbjct: 78  ETKAQEAIDLAKSADFPLMFTTEPE 102


>gi|307944237|ref|ZP_07659578.1| ATP-dependent Clp protease adaptor protein ClpS [Roseibium sp.
           TrichSKD4]
 gi|307772583|gb|EFO31803.1| ATP-dependent Clp protease adaptor protein ClpS [Roseibium sp.
           TrichSKD4]
          Length = 101

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 54/96 (56%)

Query: 41  DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
           D+ L +      K+  PK Y+V+L+ND++TP EFV+ VL+  F  D   A+ +M   H +
Sbjct: 3   DSDLKTRKSIRQKLERPKRYQVILLNDDFTPAEFVVFVLKGEFRLDVLQAEHVMETAHKK 62

Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
           G      Y  ++AE KV++    + +  YPL+ I+E
Sbjct: 63  GANVVSTYPRDVAETKVSRATETAVRMGYPLKFIVE 98


>gi|15611099|ref|NP_222750.1| hypothetical protein jhp0028 [Helicobacter pylori J99]
 gi|12230796|sp|Q9ZN32|CLPS_HELPJ RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|4154533|gb|AAD05612.1| putative [Helicobacter pylori J99]
          Length = 90

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 55/85 (64%), Gaps = 1/85 (1%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           ++  P + +V+++ND+ T  EF++  L++FF K  E A+ +ML +H  G G CGVY YEI
Sbjct: 5   QIPTPTMSQVIMLNDSITTAEFMVSALRDFFDKPLEEAQKLMLSIHRDGDGVCGVYPYEI 64

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           A  K   V + +R  ++PL+ ++++
Sbjct: 65  AIYKAVCVRDKARA-RFPLRLMVQE 88


>gi|297180171|gb|ADI16393.1| uncharacterized conserved protein [uncultured bacterium
           HF130_12L15]
          Length = 101

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 50/86 (58%)

Query: 46  SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
           S  +   K+  P+L++V+L ND++TP EFV+ VL+  F  + + A+ +M+  H +G    
Sbjct: 8   SRTKVKPKIERPRLHKVILFNDDFTPREFVVMVLKAEFGMNADQAQQVMITAHRRGACVV 67

Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPL 131
            V+  ++AE K  +  +  R+  +PL
Sbjct: 68  AVFTKDVAETKATRATDAGRKMGFPL 93


>gi|288801352|ref|ZP_06406806.1| ATP-dependent Clp protease adaptor protein ClpS [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288331735|gb|EFC70219.1| ATP-dependent Clp protease adaptor protein ClpS [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 101

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 55/91 (60%), Gaps = 2/91 (2%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           + + K+  P+ Y++L+ ND  T M+FV+H+L + F K+   A  +M+ +H +G    GVY
Sbjct: 11  KINQKISEPRKYKILMYNDEVTTMDFVVHLLMHVFNKNKAVAYELMMTIHQKGSALVGVY 70

Query: 109 AYEIAEMKVNQVMNYSRQHQYPL--QCIMEQ 137
           +Y++A+ K+ Q         +PL  +C++++
Sbjct: 71  SYDVAQTKMEQAKEIIAHSGFPLVIKCLIDK 101


>gi|150397465|ref|YP_001327932.1| ATP-dependent Clp protease adaptor [Sinorhizobium medicae WSM419]
 gi|150028980|gb|ABR61097.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
           medicae WSM419]
          Length = 101

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 42/75 (56%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PKLY+VLLVND+YTP EFV+ VL+  F    E    +M+  H  G     V   ++AE K
Sbjct: 19  PKLYKVLLVNDDYTPREFVVMVLKAIFRMSEEAGYRVMMTAHKLGTSVVVVCEKDVAETK 78

Query: 117 VNQVMNYSRQHQYPL 131
             +  +  ++  +PL
Sbjct: 79  AKEATDLGKEAGFPL 93


>gi|116253218|ref|YP_769056.1| ATP-dependent Clp protease adaptor [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257866|emb|CAK08964.1| putative ATP-dependent CLP protease adaptor protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 103

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 55/102 (53%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           +++ D  L  + +   K+  PKLY+V+LVND+YTP E VI +L+  F+   ET   +M+ 
Sbjct: 1   MSDNDIALKPKAKVKLKLDKPKLYKVILVNDDYTPRELVIMILKAVFHMSEETGYRVMMT 60

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            H  G     V   +IAE K  + ++ ++   +PL    E +
Sbjct: 61  AHKLGSCVVVVCVRDIAETKAKEGIDLAKGMGFPLMFTTEPE 102


>gi|39648126|emb|CAE26646.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
          Length = 78

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 40/69 (57%)

Query: 63  LLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMN 122
           +LVND+YTP EFV+ VL+  F    + A  +ML  H +G+   GV+  ++AE K  +  +
Sbjct: 2   ILVNDDYTPREFVVSVLKGEFRMTEDQATKVMLTAHQRGVCVVGVFTKDVAETKATRATD 61

Query: 123 YSRQHQYPL 131
             R   YPL
Sbjct: 62  AGRAKGYPL 70


>gi|15889508|ref|NP_355189.1| ATP-dependent Clp protease adaptor [Agrobacterium tumefaciens str.
           C58]
 gi|24638422|sp|Q8UD95|CLPS2_AGRT5 RecName: Full=ATP-dependent Clp protease adapter protein ClpS 2
 gi|15157382|gb|AAK87974.1| ATP-dependent Clp protease adaptor protein ClpS [Agrobacterium
           tumefaciens str. C58]
          Length = 103

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 45/82 (54%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PKLY+V+L+ND+YTP EFV  VL+  F    +T + +M+  H  G     V   +IAE K
Sbjct: 21  PKLYKVMLLNDDYTPREFVTVVLKAVFRMSEDTGRRVMMTAHRFGSAVVVVCERDIAETK 80

Query: 117 VNQVMNYSRQHQYPLQCIMEQK 138
             +  +  ++  +PL    E +
Sbjct: 81  AKEATDLGKEAGFPLMFTTEPE 102


>gi|75674828|ref|YP_317249.1| ATP-dependent Clp protease adaptor [Nitrobacter winogradskyi
           Nb-255]
 gi|74419698|gb|ABA03897.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrobacter
           winogradskyi Nb-255]
          Length = 101

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 50/98 (51%)

Query: 41  DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
           D  +   ++  +K+  P+LY+V+L ND++TP EFV+ VL   F      A  +M+     
Sbjct: 3   DIAIKPRIKAETKIERPRLYKVILHNDDFTPREFVVAVLMAEFNMTDGQAHKVMITADRL 62

Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           G    GV+A +IAE K  +  +  R   +PL    E +
Sbjct: 63  GSCVVGVFARDIAETKATRATDAGRSMGFPLLFTTEPE 100


>gi|222149341|ref|YP_002550298.1| ATP-dependent Clp protease adaptor [Agrobacterium vitis S4]
 gi|221736325|gb|ACM37288.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 103

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 50/93 (53%)

Query: 46  SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
            +V+   K+  P+LY+V+L ND+YTP EFV  VL+  F    ET   +M+  H  G    
Sbjct: 10  PKVKTRPKLEQPRLYKVILTNDDYTPREFVTIVLKAVFRMSEETGNRVMMTAHRFGSAVV 69

Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            V   +IAE K  +  + +++  +PL   +E +
Sbjct: 70  VVCTRDIAETKSTEANDLAKEAGFPLLFTIEPE 102


>gi|283797982|ref|ZP_06347135.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium sp.
           M62/1]
 gi|291074282|gb|EFE11646.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium sp.
           M62/1]
 gi|295090086|emb|CBK76193.1| Uncharacterized conserved protein [Clostridium cf. saccharolyticum
           K10]
          Length = 99

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 52/85 (61%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           K++ P LY V++ ND++T M+FV+ +L   F+K+HE A  +M+ VH+      G Y+Y+I
Sbjct: 14  KLKKPSLYHVVMHNDDFTTMDFVVEILMTIFHKEHEEAVALMMLVHNIQRAVVGTYSYDI 73

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           A  K  +    +R+  +P +  +E+
Sbjct: 74  ARTKAEEAEERAREQGFPFRLSVEE 98


>gi|27377747|ref|NP_769276.1| ATP-dependent Clp protease adaptor [Bradyrhizobium japonicum USDA
           110]
 gi|37077101|sp|Q89RX6|CLPS1_BRAJA RecName: Full=ATP-dependent Clp protease adapter protein ClpS 1
 gi|27350892|dbj|BAC47901.1| bll2636 [Bradyrhizobium japonicum USDA 110]
          Length = 101

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
           V  PKL++V+L+ND+YTP EFV  +L+  F    + A  +M+  H  G     V+  ++A
Sbjct: 16  VERPKLHKVILINDDYTPREFVTMILKAEFRMTEDQAYKVMITAHKLGACVVAVFTRDVA 75

Query: 114 EMKVNQVMNYSRQHQYPL 131
           E K  +  +  R   YPL
Sbjct: 76  ETKATRATDAGRAKGYPL 93


>gi|254503767|ref|ZP_05115918.1| ATP-dependent Clp protease adaptor protein ClpS [Labrenzia
           alexandrii DFL-11]
 gi|222439838|gb|EEE46517.1| ATP-dependent Clp protease adaptor protein ClpS [Labrenzia
           alexandrii DFL-11]
          Length = 77

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 44/76 (57%)

Query: 63  LLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMN 122
           +L+ND+YTP EFV+ +L+  F  D   A  +ML  H +G     VY  ++AE K  + ++
Sbjct: 2   VLLNDDYTPREFVVLILKGEFRLDSAQADVVMLTAHQKGACVVSVYPKDVAETKATRAID 61

Query: 123 YSRQHQYPLQCIMEQK 138
            + +  YPLQ  +E +
Sbjct: 62  AAGRLGYPLQFSVEPE 77


>gi|94272507|ref|ZP_01292136.1| ATP-dependent Clp protease adaptor protein ClpS [delta
           proteobacterium MLMS-1]
 gi|93450106|gb|EAT01450.1| ATP-dependent Clp protease adaptor protein ClpS [delta
           proteobacterium MLMS-1]
          Length = 58

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 37/56 (66%)

Query: 83  FYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           F+ D   A  IM+ VH +G+G  GVY  + AE KV  V N +R+H+YPL+C +EQ+
Sbjct: 3   FHHDQAAAHRIMMNVHREGVGVAGVYPRDSAETKVAMVHNLARKHEYPLKCSLEQE 58


>gi|325293590|ref|YP_004279454.1| ATP-dependent Clp protease adaptor [Agrobacterium sp. H13-3]
 gi|325061443|gb|ADY65134.1| ATP-dependent Clp protease adaptor [Agrobacterium sp. H13-3]
          Length = 104

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 45/82 (54%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           PKLY+V+L+ND+YTP +FV  VL+  F+   +T   +M+  H  G     V   +IAE K
Sbjct: 22  PKLYKVILLNDDYTPRDFVTLVLKVVFHMGEDTGHRVMMTAHRFGSAVVVVCERDIAETK 81

Query: 117 VNQVMNYSRQHQYPLQCIMEQK 138
             +  +  ++  +PL    E +
Sbjct: 82  AKEANDLGKEAGFPLMFTTEPE 103


>gi|92116383|ref|YP_576112.1| ATP-dependent Clp protease adaptor [Nitrobacter hamburgensis X14]
 gi|91799277|gb|ABE61652.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrobacter
           hamburgensis X14]
          Length = 101

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 44/91 (48%)

Query: 41  DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
           D  +        +   P+L++V+L ND+YTP EFV+ VL   F    + A  +M+  H  
Sbjct: 3   DTAIKPRTNVEPRTERPRLHKVILHNDDYTPREFVVTVLMAEFGLTEDQAHKVMITAHRL 62

Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPL 131
           G     V+  ++AE K  +  +  R   +PL
Sbjct: 63  GCCVVAVFTRDVAETKATRATDAGRAMGFPL 93


>gi|159899721|ref|YP_001545968.1| ATP-dependent Clp protease adaptor protein ClpS [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159892760|gb|ABX05840.1| ATP-dependent Clp protease adaptor protein ClpS [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 113

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 2/103 (1%)

Query: 36  GIAEFDNCLDSEVRFS--SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
             AE     D E+ F   S   + K YRV+L ND+ TPME V+ VL+  F +  E AK I
Sbjct: 8   ATAEPQTTTDVELDFITLSDEELEKPYRVILQNDDITPMEVVVWVLEKVFEQSFEQAKRI 67

Query: 94  MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
           M++ H +G     +  ++ A  +V    + +R   +PL   +E
Sbjct: 68  MIEAHVKGHALVTILPFKEASARVYSAQSRARDMGFPLVLFLE 110


>gi|219848162|ref|YP_002462595.1| ATP-dependent Clp protease adaptor protein ClpS [Chloroflexus
           aggregans DSM 9485]
 gi|219542421|gb|ACL24159.1| ATP-dependent Clp protease adaptor protein ClpS [Chloroflexus
           aggregans DSM 9485]
          Length = 107

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 48/79 (60%)

Query: 58  KLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKV 117
           + YRV++ ND+ TPM+FV+ VL+ FF  D   A+ +ML  H++G     V  ++ A+ +V
Sbjct: 26  RPYRVIVQNDDVTPMDFVVIVLRVFFGLDLARAEQVMLTAHYEGRALVTVLPFQEAQERV 85

Query: 118 NQVMNYSRQHQYPLQCIME 136
            Q  + +R+  YPL   +E
Sbjct: 86  YQAHHAAREAGYPLTFYLE 104


>gi|295115732|emb|CBL36579.1| Uncharacterized conserved protein [butyrate-producing bacterium
           SM4/1]
          Length = 99

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 52/85 (61%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           K++ P LY V++ ND++T M+FV+ +L   F+K+HE A  +M+ VH+      G Y+Y+I
Sbjct: 14  KLKKPSLYHVVMHNDDFTTMDFVVEILMTIFHKEHEEAVALMMLVHNIQRAVVGTYSYDI 73

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           A  +  +    +R+  +P +  +E+
Sbjct: 74  ARTRAEEAEERAREQGFPFRLSVEE 98


>gi|156743978|ref|YP_001434107.1| ATP-dependent Clp protease adaptor protein ClpS [Roseiflexus
           castenholzii DSM 13941]
 gi|156235306|gb|ABU60089.1| ATP-dependent Clp protease adaptor protein ClpS [Roseiflexus
           castenholzii DSM 13941]
          Length = 109

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%)

Query: 58  KLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKV 117
           + YRV++ ND+ TPM+FV+ VL   F    E +  IML+ HH G        YE A+ +V
Sbjct: 28  RPYRVIIENDDVTPMDFVVLVLLTIFELGFEQSVAIMLEAHHNGRAHVVTLPYEEAQRRV 87

Query: 118 NQVMNYSRQHQYPLQCIME 136
            +  + +R+  YPL   +E
Sbjct: 88  YEAHHAAREAGYPLSFYLE 106


>gi|309791687|ref|ZP_07686179.1| ATP-dependent Clp protease adaptor protein ClpS [Oscillochloris
           trichoides DG6]
 gi|308226309|gb|EFO80045.1| ATP-dependent Clp protease adaptor protein ClpS [Oscillochloris
           trichoides DG6]
          Length = 107

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 43/79 (54%)

Query: 58  KLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKV 117
           K YRV++ ND+ TPM+FV+ VL+ FF      A  +ML  HHQG        +E A+ +V
Sbjct: 26  KPYRVIVENDDVTPMDFVVMVLRLFFGLALNDAMQVMLTAHHQGRALVTTMPFEEAKERV 85

Query: 118 NQVMNYSRQHQYPLQCIME 136
                 +R+  YPL   +E
Sbjct: 86  YSAHTVAREEGYPLTFYLE 104


>gi|148656369|ref|YP_001276574.1| ATP-dependent Clp protease adaptor protein ClpS [Roseiflexus sp.
           RS-1]
 gi|148568479|gb|ABQ90624.1| ATP-dependent Clp protease adaptor protein ClpS [Roseiflexus sp.
           RS-1]
          Length = 113

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 44/79 (55%)

Query: 58  KLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKV 117
           + YRV++ ND+ TPM+FV+ +L   F    E +  IML+ HH G        YE A+ +V
Sbjct: 32  RPYRVIIENDDVTPMDFVVLILLTIFELGFEQSVAIMLEAHHNGRAHVVTLPYEEAQRRV 91

Query: 118 NQVMNYSRQHQYPLQCIME 136
            +  + +R+  YPL   +E
Sbjct: 92  YEAHHAAREAGYPLSFYLE 110


>gi|163848160|ref|YP_001636204.1| ATP-dependent Clp protease adaptor protein ClpS [Chloroflexus
           aurantiacus J-10-fl]
 gi|222526063|ref|YP_002570534.1| ATP-dependent Clp protease adaptor protein ClpS [Chloroflexus sp.
           Y-400-fl]
 gi|163669449|gb|ABY35815.1| ATP-dependent Clp protease adaptor protein ClpS [Chloroflexus
           aurantiacus J-10-fl]
 gi|222449942|gb|ACM54208.1| ATP-dependent Clp protease adaptor protein ClpS [Chloroflexus sp.
           Y-400-fl]
          Length = 108

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 47/79 (59%)

Query: 58  KLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKV 117
           + YRV++ ND+ TPM+FV+ VL+ FF  D   A+ +ML  H++G     V   + A+ +V
Sbjct: 26  RPYRVIVQNDDVTPMDFVVIVLRVFFGLDLARAEQVMLTAHYEGRALVTVLPLQEAQERV 85

Query: 118 NQVMNYSRQHQYPLQCIME 136
            Q  + +R+  YPL   +E
Sbjct: 86  YQAHHAAREAGYPLTFYLE 104


>gi|149192136|ref|ZP_01870358.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio shilonii
           AK1]
 gi|148834039|gb|EDL51054.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio shilonii
           AK1]
          Length = 45

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/44 (52%), Positives = 31/44 (70%)

Query: 94  MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           ML VH++G   CG Y  E+AE KV QV  YSR++++PL C ME+
Sbjct: 1   MLAVHYEGKAVCGTYTSEVAETKVAQVTMYSRENEHPLLCTMEK 44


>gi|214090057|gb|ACJ63449.1| putative ATP-dependent Clp protease adaptor protein [Ochrobactrum
          sp. 11a]
          Length = 64

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 24/31 (77%)

Query: 48 VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHV 78
           R   K + P LYRVLL+ND+YTPMEFV+HV
Sbjct: 34 TRTQPKTKKPSLYRVLLLNDDYTPMEFVVHV 64


>gi|224419090|ref|ZP_03657096.1| hypothetical protein HcanM9_07438 [Helicobacter canadensis MIT
           98-5491]
          Length = 41

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 28/40 (70%)

Query: 98  HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           HH G G CG+Y Y+IAE K  QV   +++ Q+PL+ I+E+
Sbjct: 1   HHNGRGMCGIYPYDIAETKAMQVRKMAKEKQFPLRAILEK 40


>gi|261886350|ref|ZP_06010389.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 76

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
           P L++V+L+ND  T M+FV+ +L + F K    A  +M+K H  G   C     EIA+
Sbjct: 18  PNLFKVMLLNDEVTTMDFVVMILIDIFNKSKNEAIELMVKNHQSGRAICRFSTKEIAQ 75


>gi|87311880|ref|ZP_01093992.1| hypothetical protein DSM3645_04770 [Blastopirellula marina DSM
           3645]
 gi|87285411|gb|EAQ77333.1| hypothetical protein DSM3645_04770 [Blastopirellula marina DSM
           3645]
          Length = 123

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 12/99 (12%)

Query: 46  SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK--VHHQGIG 103
           ++ R  +K + P  Y V+L ND+    +FVI  L+  F   +E  KC+ L   VH QG  
Sbjct: 25  TDARNQTKRQPP--YVVILHNDDINTFDFVIETLRKVF--GYELEKCLQLTINVHKQGRS 80

Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQ------YPLQCIME 136
                A E+AE+KV+Q+ +     Q       PL+  +E
Sbjct: 81  AIWSGALEVAELKVDQIRSRGADPQMKSKGALPLRVTLE 119


>gi|149192135|ref|ZP_01870357.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio shilonii
          AK1]
 gi|148834038|gb|EDL51053.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio shilonii
          AK1]
          Length = 60

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 26/33 (78%)

Query: 52 SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFY 84
          +KV  P +Y V+L ND+YTPM+FV+ +L+ FF+
Sbjct: 20 TKVEPPAMYNVVLNNDDYTPMDFVVEILERFFH 52


>gi|320103498|ref|YP_004179089.1| ATP-dependent Clp protease adaptor protein ClpS [Isosphaera pallida
           ATCC 43644]
 gi|319750780|gb|ADV62540.1| ATP-dependent Clp protease adaptor protein ClpS [Isosphaera pallida
           ATCC 43644]
          Length = 124

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%)

Query: 46  SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
           +  R  +K R    Y V+++ND     E+VI +L   F     TA+ +  ++H +G+   
Sbjct: 26  TSTRGLTKTRQLPRYHVIILNDEEHTFEYVIDLLTKVFRHSRPTAEALTWQIHTRGMAIV 85

Query: 106 GVYAYEIAEMKVNQVMNY 123
                E+AE+K +QV+++
Sbjct: 86  YTTHKELAELKRDQVLSW 103


>gi|168702735|ref|ZP_02735012.1| ATP-dependent Clp protease adaptor protein ClpS [Gemmata
           obscuriglobus UQM 2246]
          Length = 110

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 9/85 (10%)

Query: 60  YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI--MLKVHHQGIGECGVYAYEIAEMKV 117
           Y V+L ND+   M+FV+ VL+  F   +   KC+  ML+ H QG     + A E+AE+K 
Sbjct: 26  YAVVLHNDDTNTMDFVVTVLRKVF--GYTVEKCVELMLEAHTQGKVAVWIGALEVAELKA 83

Query: 118 NQVMNYS-----RQHQYPLQCIMEQ 137
           +Q+ ++       ++ +PL   +E 
Sbjct: 84  DQIKSFGPDPHVTKNGHPLGVTVEP 108


>gi|37520315|ref|NP_923692.1| ATP-dependent Clp protease adaptor protein ClpS [Gloeobacter
           violaceus PCC 7421]
 gi|39930962|sp|Q7NML9|CLPS_GLOVI RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|35211308|dbj|BAC88687.1| gsl0746 [Gloeobacter violaceus PCC 7421]
          Length = 93

 Score = 43.9 bits (102), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 59  LYRVLLVNDNYTPMEFVIHVLQNFFYKDHET-AKCIMLKVHHQGIGECGVYAYEIAE 114
           LY+VLL ND++TPM +VI VL     K   + A+ IML+ H+ G+    V A E AE
Sbjct: 18  LYKVLLHNDDHTPMNYVIEVLMKTIPKMQPSKARKIMLEAHNGGVAVVIVCALEHAE 74


>gi|224419091|ref|ZP_03657097.1| ATP-dependent Clp protease, adaptor protein ClpS [Helicobacter
          canadensis MIT 98-5491]
          Length = 58

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 34/54 (62%)

Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
          N +++      K++ P  Y+V+L+ND+YT  +FVI +LQ  F+K  E +  +ML
Sbjct: 5  NQIENATETLEKLQEPIRYKVILLNDDYTTQDFVIEILQKVFHKGFEESLNLML 58


>gi|56750848|ref|YP_171549.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus
           elongatus PCC 6301]
 gi|81596329|sp|Q5N3U1|CLPS_SYNP6 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|56685807|dbj|BAD79029.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 91

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIGECGVYA 109
           ++K ++   YRVLL ND++ PME+V+ VL Q         A  IM++ H  G G      
Sbjct: 12  TTKRKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCD 71

Query: 110 YEIAEMKVNQVMNYSRQHQY 129
            E AE    Q+ ++  + Q+
Sbjct: 72  IEPAEFYCEQLKSHGLEQQH 91


>gi|223936983|ref|ZP_03628891.1| ATP-dependent Clp protease adaptor protein ClpS [bacterium
           Ellin514]
 gi|223894264|gb|EEF60717.1| ATP-dependent Clp protease adaptor protein ClpS [bacterium
           Ellin514]
          Length = 101

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 46/93 (49%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
           M +    E    ++ E + +SK  +   Y V+  ND    M++V HV Q  F  + + A+
Sbjct: 1   MAETATPEIMPDVEQEEQAASKSELEPGYLVVCWNDPVNLMDYVSHVFQKVFGWNRQKAE 60

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYS 124
             ML+VH+QG       + E AE  V+Q+  YS
Sbjct: 61  QHMLEVHNQGKSVLVRESMEKAEHFVHQLQKYS 93


>gi|57335897|emb|CAH25350.1| hypothetical protein [Guillardia theta]
          Length = 233

 Score = 40.8 bits (94), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK-DHETAKCIMLKVHHQGIGECGV 107
           R S K    K Y+VLL ND+    ++VI  L  +      + AK I +  H+ G+   GV
Sbjct: 149 RPSDKTDPGKKYKVLLFNDDKNTRQYVIDTLMKYIPGMTADKAKEITVAAHNTGMAIVGV 208

Query: 108 YAYEIAE 114
           + YE+AE
Sbjct: 209 WMYEMAE 215


>gi|209523998|ref|ZP_03272550.1| ATP-dependent Clp protease adaptor protein ClpS [Arthrospira maxima
           CS-328]
 gi|209495670|gb|EDZ95973.1| ATP-dependent Clp protease adaptor protein ClpS [Arthrospira maxima
           CS-328]
          Length = 117

 Score = 40.8 bits (94), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK-DHETAKCIMLKVHHQGIGECGV 107
           + S+  ++   YRVLL ND+Y PME+V+ VL +         A  IM++ H  G+     
Sbjct: 32  KTSTNRKLAPRYRVLLHNDDYNPMEYVVQVLMSTVPGLTQPQAVSIMMEAHTNGLALVIT 91

Query: 108 YAYEIAEMKVNQVMNYS 124
            A E AE     + N+ 
Sbjct: 92  CALEHAEFYCETLKNHG 108


>gi|81299501|ref|YP_399709.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus
           elongatus PCC 7942]
 gi|123728228|sp|Q31QE7|CLPS_SYNE7 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|81168382|gb|ABB56722.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 95

 Score = 40.4 bits (93), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIGECGVYA 109
           ++K ++   YRVLL ND++ PME+V+ VL Q         A  IM++ H  G G      
Sbjct: 12  TTKRKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCD 71

Query: 110 YEIAEMKVNQVMNY 123
            E AE    Q+ ++
Sbjct: 72  IEPAEFYCEQLKSH 85


>gi|323359749|ref|YP_004226145.1| hypothetical protein MTES_3301 [Microbacterium testaceum StLB037]
 gi|323276120|dbj|BAJ76265.1| uncharacterized conserved protein [Microbacterium testaceum
           StLB037]
          Length = 102

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 33/68 (48%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           P  ++ ++ ND    M +V HV + +F  D  TA+ +ML VHH G         E+ E  
Sbjct: 25  PSSWQTVVWNDPVNLMSYVSHVFRTYFGFDSATAERLMLAVHHDGHAVVARGPREVMEAH 84

Query: 117 VNQVMNYS 124
            + + +Y 
Sbjct: 85  THAMHDYG 92


>gi|158338702|ref|YP_001519879.1| ATP-dependent Clp protease adaptor protein ClpS [Acaryochloris
           marina MBIC11017]
 gi|158308943|gb|ABW30560.1| ATP-dependent Clp protease adaptor protein ClpS [Acaryochloris
           marina MBIC11017]
          Length = 93

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 47  EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIGEC 105
           E R +S+   PK YRVLL ND++  ME V+ VL Q         A  +M++ H  GI   
Sbjct: 7   EKRSTSRKLAPK-YRVLLHNDDFNSMEHVVQVLIQTVPNLTQPQAVSVMMEAHTNGIALV 65

Query: 106 GVYAYEIAE 114
              A+E AE
Sbjct: 66  ITCAFEHAE 74


>gi|299115355|emb|CBN74180.1| ATP-dependent Clp protease adaptor protein ClpS [Ectocarpus
           siliculosus]
          Length = 152

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 34/68 (50%)

Query: 47  EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
           EV F + +R    Y+VLL NDN    E+V   L         TA  IM + +  G+ + G
Sbjct: 66  EVSFETSIRPEDKYKVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQANDNGMAQVG 125

Query: 107 VYAYEIAE 114
           ++  E+A+
Sbjct: 126 IWHQEMAD 133


>gi|284929541|ref|YP_003422063.1| hypothetical protein UCYN_10070 [cyanobacterium UCYN-A]
 gi|284809985|gb|ADB95682.1| uncharacterized conserved protein [cyanobacterium UCYN-A]
          Length = 97

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIGECGVYA 109
           ++K  VP+ Y+VLL ND++ PM++V+ +L Q         A  IM++ H  G       A
Sbjct: 15  TTKKPVPR-YKVLLHNDDFNPMDYVVQILMQTISGMTRPQAAEIMMEAHISGTALVITCA 73

Query: 110 YEIAE 114
           +E AE
Sbjct: 74  FEPAE 78


>gi|260434316|ref|ZP_05788286.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
           WH 8109]
 gi|260412190|gb|EEX05486.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
           WH 8109]
          Length = 123

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 6/93 (6%)

Query: 23  SFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF 82
           S +   DS   K G A   +     VR     R P+ Y+VLL ND    ME+V+  LQ  
Sbjct: 17  SMVMAVDSPSQKPGGAAVLDKAPERVRK----RSPR-YKVLLHNDPVNSMEYVVATLQQV 71

Query: 83  FYK-DHETAKCIMLKVHHQGIGECGVYAYEIAE 114
             +   +    +ML+ H+ G+G   V   E AE
Sbjct: 72  VPQLSEQDCMAVMLEAHNTGVGLVIVCDIEPAE 104


>gi|114214762|emb|CAK51544.1| ATP-dependent Clp protease adaptor protein ClpS [Celosia cristata]
          Length = 134

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 29/60 (48%)

Query: 58  KLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKV 117
           + + VL+ ND    M +V+ V Q  F    E A  +ML VHH+G         E AE+ V
Sbjct: 59  RPWIVLVWNDPINLMSYVVFVFQKLFGYSREKATSLMLDVHHKGRAVVSSGTREKAELDV 118


>gi|284052626|ref|ZP_06382836.1| ATP-dependent Clp protease adaptor protein ClpS [Arthrospira
           platensis str. Paraca]
          Length = 93

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK-DHETAKCIMLKVHHQGIGECGV 107
           + S+  ++   YRVLL ND++ PME+V+ VL +         A  IM++ H  G+     
Sbjct: 8   KTSTNRKLAPRYRVLLHNDDHNPMEYVVQVLMSTVPGLTQPQAVSIMMEAHTNGLALVIT 67

Query: 108 YAYEIAE 114
            A E AE
Sbjct: 68  CALEHAE 74


>gi|313142600|ref|ZP_07804793.1| ERD1 protein [Helicobacter canadensis MIT 98-5491]
 gi|313131631|gb|EFR49248.1| ERD1 protein [Helicobacter canadensis MIT 98-5491]
          Length = 35

 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 24/33 (72%)

Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           CG+Y Y+IAE K  QV   +++ Q+PL+ I+E+
Sbjct: 2   CGIYPYDIAETKAMQVRKMAKEKQFPLRAILEK 34


>gi|291571937|dbj|BAI94209.1| ATP-dependent Clp protease adaptor protein ClpS [Arthrospira
           platensis NIES-39]
          Length = 117

 Score = 38.5 bits (88), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK-DHETAKCIMLKVHHQGIGECGV 107
           + S+  ++   YRVLL ND++ PME+V+ VL +         A  IM++ H  G+     
Sbjct: 32  KTSTNRKLAPRYRVLLHNDDHNPMEYVVQVLMSTVPGLTQPQAVSIMMEAHTNGLALVIT 91

Query: 108 YAYEIAEMKVNQVMNYS 124
            A E AE     + N+ 
Sbjct: 92  CALEHAEFYCETLKNHG 108


>gi|269926486|ref|YP_003323109.1| ATP-dependent Clp protease adaptor protein ClpS [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790146|gb|ACZ42287.1| ATP-dependent Clp protease adaptor protein ClpS [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 101

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 35/65 (53%)

Query: 60  YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQ 119
           ++V+L ND+   M++V+ VL        E A  +ML+ HH G       A E AE+  ++
Sbjct: 30  WKVILWNDDVHSMDYVVLVLMRCLGMSLEKATQVMLEAHHNGQSVAWAGAKETAELYQDR 89

Query: 120 VMNYS 124
           ++++ 
Sbjct: 90  LLSFG 94


>gi|116075699|ref|ZP_01472958.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
           RS9916]
 gi|116067014|gb|EAU72769.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
           RS9916]
          Length = 104

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 55  RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK-DHETAKCIMLKVHHQGIGECGVYAYEIA 113
           R P+ Y+VLL ND    ME+V+  LQ    +   + A  +ML+ H+ G+G   V   E A
Sbjct: 26  RSPR-YKVLLHNDPVNSMEYVVSTLQQVVPQLSEQDAMAVMLEAHNSGVGLVIVCDLEPA 84

Query: 114 E 114
           E
Sbjct: 85  E 85


>gi|75907498|ref|YP_321794.1| ATP-dependent Clp protease adaptor protein ClpS [Anabaena
           variabilis ATCC 29413]
 gi|75701223|gb|ABA20899.1| ATP-dependent Clp protease adaptor protein ClpS [Anabaena
           variabilis ATCC 29413]
          Length = 93

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 47  EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK-DHETAKCIMLKVHHQGIGEC 105
           E R +S+   P+ YRVLL ND+Y  ME+V+ VL           A  IM++ H  G+   
Sbjct: 7   EKRSTSRKLAPR-YRVLLHNDDYNSMEYVVQVLITTVPSLTQPQAVSIMMEAHTNGLALV 65

Query: 106 GVYAYEIAE 114
              A E AE
Sbjct: 66  ITCAQEHAE 74


>gi|282899028|ref|ZP_06307010.1| ATP-dependent Clp protease adaptor protein ClpS [Cylindrospermopsis
           raciborskii CS-505]
 gi|281196168|gb|EFA71083.1| ATP-dependent Clp protease adaptor protein ClpS [Cylindrospermopsis
           raciborskii CS-505]
          Length = 93

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK-DHETAKCIMLKVHHQGIGECGV 107
           + S+  ++   YRVLL ND+Y  ME+V+ VL +         A  IM++ H  G+     
Sbjct: 8   KPSTTRKLAPRYRVLLHNDDYNSMEYVVQVLLSTIPSLTQPQAVSIMMEAHSHGLALVIS 67

Query: 108 YAYEIAEMKVNQVMNY 123
            A E AE     + NY
Sbjct: 68  CALEHAEFYCESLNNY 83


>gi|113954242|ref|YP_729603.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
           CC9311]
 gi|113881593|gb|ABI46551.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
           CC9311]
          Length = 103

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK- 85
           M D+     G A   +     VR +S    P+ Y+VLL ND    ME+V+  LQ    + 
Sbjct: 1   MVDTPSRSPGGAAVLDKQTERVRKTS----PR-YKVLLHNDPVNSMEYVVVTLQQVVPQL 55

Query: 86  DHETAKCIMLKVHHQGIGECGVYAYEIAE 114
             + A  +ML+ H+ GIG   V   E AE
Sbjct: 56  SEQDAMAVMLETHNTGIGLVIVCDIEPAE 84


>gi|308177064|ref|YP_003916470.1| ATP-dependent Clp protease adaptor protein ClpS [Arthrobacter
           arilaitensis Re117]
 gi|307744527|emb|CBT75499.1| ATP-dependent Clp protease adaptor protein ClpS [Arthrobacter
           arilaitensis Re117]
          Length = 94

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 6/80 (7%)

Query: 58  KLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKV 117
           K +R+++ ND    M +V +V +++F    E A+ +ML+VHH G       + E  E  V
Sbjct: 19  KPWRLIVWNDPVNLMSYVAYVFRSYFGVSPEKAEKLMLQVHHDGFCTVRSGSREAIESDV 78

Query: 118 NQVMNYSRQHQYPLQCIMEQ 137
            Q M     H + L   M Q
Sbjct: 79  -QAM-----HGFGLNATMTQ 92


>gi|325002222|ref|ZP_08123334.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudonocardia sp.
           P1]
          Length = 107

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 25/42 (59%)

Query: 60  YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
           ++ ++ ND    M +V +VLQ  F    +TA  +ML VHH+G
Sbjct: 35  WQAIVWNDPVNLMSYVTYVLQKVFDYPEQTANALMLDVHHKG 76


>gi|298490087|ref|YP_003720264.1| ATP-dependent Clp protease adaptor protein ClpS ['Nostoc azollae'
           0708]
 gi|298232005|gb|ADI63141.1| ATP-dependent Clp protease adaptor protein ClpS ['Nostoc azollae'
           0708]
          Length = 92

 Score = 37.4 bits (85), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 47  EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK-DHETAKCIMLKVHHQGIGEC 105
           E R +++   P+ YRVLL ND+Y  ME+V+ VL           A  IM++ H+ G+   
Sbjct: 7   EKRSTTRKLAPQ-YRVLLHNDDYNSMEYVVQVLMTSVPSITQPQAVNIMMEAHNSGLALV 65

Query: 106 GVYAYEIAE 114
              A E AE
Sbjct: 66  ITCAQEHAE 74


>gi|87301880|ref|ZP_01084714.1| hypothetical protein WH5701_01105 [Synechococcus sp. WH 5701]
 gi|87283448|gb|EAQ75403.1| hypothetical protein WH5701_01105 [Synechococcus sp. WH 5701]
          Length = 109

 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 53  KVRVPKL-YRVLLVNDNYTPMEFVIHVLQNFFYK-DHETAKCIMLKVHHQGIGECGVYAY 110
           +VR P   YRVLL ND    ME+V+  L+        + A  +ML+ H+ G+G   V   
Sbjct: 27  RVRKPSPRYRVLLHNDPVNSMEYVVTTLRQVVPSLSEQDAIAVMLEAHNTGVGLVIVCDL 86

Query: 111 EIAE 114
           E AE
Sbjct: 87  EPAE 90


>gi|239981994|ref|ZP_04704518.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces albus
           J1074]
 gi|291453845|ref|ZP_06593235.1| ATP-dependent Clp protease adapter protein clpS [Streptomyces albus
           J1074]
 gi|291356794|gb|EFE83696.1| ATP-dependent Clp protease adapter protein clpS [Streptomyces albus
           J1074]
          Length = 99

 Score = 37.4 bits (85), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 9/101 (8%)

Query: 38  AEFDNCLDSEVRFSSKVRVPKLYRVLLV-NDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           AE +    +E  F+  V  P L  V LV ND    M +V +V Q +F    E A  +ML 
Sbjct: 4   AETEQPAAAEETFA--VPEPDLPWVTLVHNDPVNLMSYVAYVFQAYFGYSKEKANKLMLD 61

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           VHH+G       + E  E  V Q M     H Y L   ++Q
Sbjct: 62  VHHKGRAVVSSGSREEMERDV-QAM-----HGYGLWATLQQ 96


>gi|182414611|ref|YP_001819677.1| ATP-dependent Clp protease adaptor protein ClpS [Opitutus terrae
           PB90-1]
 gi|177841825|gb|ACB76077.1| ATP-dependent Clp protease adaptor protein ClpS [Opitutus terrae
           PB90-1]
          Length = 107

 Score = 37.4 bits (85), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 45  DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIG- 103
             E + ++ + +  ++RV+++ND    M +V+ V +  F  D  TA+  ML+VH QG   
Sbjct: 17  SPESQGATALALEGIWRVVVLNDPVNLMSYVVMVFKKVFGFDDATARRHMLEVHEQGRSI 76

Query: 104 -------ECGVYAYEIAEMKVNQVMNYSRQH 127
                  +   YA+ + +  +  V+     H
Sbjct: 77  VWSGLREKAEAYAFTLQQWHLTAVLEPDETH 107


>gi|86608169|ref|YP_476931.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556711|gb|ABD01668.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 93

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 58  KLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET-AKCIMLKVHHQGIGECGVYAYEIAEMK 116
            +YRVLL ND+   ME+V+ VL           A  IML+ HH G+    V   E AE  
Sbjct: 17  PMYRVLLHNDDVNTMEYVVQVLVKVIPAMMPPQATEIMLEAHHNGVAVVIVVPREHAEFY 76

Query: 117 VNQVMNYSRQH 127
             Q+    RQH
Sbjct: 77  CEQL----RQH 83


>gi|294460817|gb|ADE75982.1| unknown [Picea sitchensis]
          Length = 158

 Score = 37.4 bits (85), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 9/66 (13%)

Query: 38  AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK-DHETAKCIMLK 96
           +EFD      +R S K   P  YRVLL NDNY   E+V+ VL         +TA  IM +
Sbjct: 67  SEFD------LRKSRKTSPP--YRVLLHNDNYNKREYVVQVLMKVIPGMTLDTAVNIMQE 118

Query: 97  VHHQGI 102
            H+ G+
Sbjct: 119 AHYNGL 124


>gi|170078877|ref|YP_001735515.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
           PCC 7002]
 gi|169886546|gb|ACB00260.1| ATP-dependent Clp protease adaptor protein [Synechococcus sp. PCC
           7002]
          Length = 95

 Score = 37.0 bits (84), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 47  EVRFSSKVRVPKL-YRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIG 103
           E R +S +R P   YRVLL ND++  ME V+  L Q         A  IM++ H  GI 
Sbjct: 7   EQRSTSTIRKPAPRYRVLLHNDDFNSMEHVVQTLMQTVAGLTQPQAVSIMMEAHTNGIA 65


>gi|284989906|ref|YP_003408460.1| ATP-dependent Clp protease adaptor protein ClpS [Geodermatophilus
           obscurus DSM 43160]
 gi|284063151|gb|ADB74089.1| ATP-dependent Clp protease adaptor protein ClpS [Geodermatophilus
           obscurus DSM 43160]
          Length = 98

 Score = 37.0 bits (84), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 25/44 (56%)

Query: 58  KLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
           + +  ++ ND    M +V +VLQ  F  D  TA  +ML+VH +G
Sbjct: 23  RPWVTIVWNDPVNLMTYVTYVLQELFGYDEPTATTLMLQVHEEG 66


>gi|32477341|ref|NP_870335.1| hypothetical protein RB12137 [Rhodopirellula baltica SH 1]
 gi|32447892|emb|CAD77410.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
 gi|327537948|gb|EGF24645.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopirellula
           baltica WH47]
          Length = 116

 Score = 37.0 bits (84), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 22/93 (23%), Positives = 41/93 (44%)

Query: 36  GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
            +AE D   + E R   K +    Y V+L +D     ++VI +++  F    E    +  
Sbjct: 7   AVAEPDVVTEEEQRSDRKPKRQPPYHVILWDDTDHSYDYVISMMKRLFRMPIEKGYQVAK 66

Query: 96  KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQ 128
           +V   G   C     E+AE+K +Q+  + +  +
Sbjct: 67  EVDKSGRAICMTTTLELAELKRDQIHAFGKDER 99


>gi|148243279|ref|YP_001228436.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
           RCC307]
 gi|147851589|emb|CAK29083.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
           RCC307]
          Length = 107

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 49  RFSSKVRVPKL-YRVLLVNDNYTPMEFVIHVLQNFFYK-DHETAKCIMLKVHHQGIGECG 106
           R    VR P   YRVLL ND    ME+V+  L+        + A  +ML+ H+ G+G   
Sbjct: 21  RQPETVRKPSPRYRVLLHNDPVNSMEYVVTSLREVVPSLSEQDAMAVMLEAHNSGVGLVI 80

Query: 107 VYAYEIAE 114
           V   E AE
Sbjct: 81  VCDIEPAE 88


>gi|225455872|ref|XP_002274839.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297734178|emb|CBI15425.3| unnamed protein product [Vitis vinifera]
          Length = 157

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 9/66 (13%)

Query: 38  AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK-DHETAKCIMLK 96
           +EFD      +R S K+  P  YRVLL NDNY   E+V+ VL         + A  IM +
Sbjct: 66  SEFD------LRKSRKMSPP--YRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQE 117

Query: 97  VHHQGI 102
            HH G+
Sbjct: 118 AHHNGM 123


>gi|78211862|ref|YP_380641.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
           CC9605]
 gi|78196321|gb|ABB34086.1| conserved hypothetical protein [Synechococcus sp. CC9605]
          Length = 106

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 6/92 (6%)

Query: 24  FIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFF 83
            +   +S   K G A   +    +VR     R P+ Y+VLL ND    ME+V+  LQ   
Sbjct: 1   MVMAVESPSQKPGGAAVLDKAPEKVRK----RSPR-YKVLLHNDPVNSMEYVVATLQQVV 55

Query: 84  YK-DHETAKCIMLKVHHQGIGECGVYAYEIAE 114
            +   +    +ML+ H+ G+G   V   E AE
Sbjct: 56  PQLSEQDCMAVMLEAHNTGVGLVIVCDIEPAE 87


>gi|147805878|emb|CAN78258.1| hypothetical protein VITISV_026645 [Vitis vinifera]
          Length = 135

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 9/66 (13%)

Query: 38  AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK-DHETAKCIMLK 96
           +EFD      +R S K+  P  YRVLL NDNY   E+V+ VL         + A  IM +
Sbjct: 44  SEFD------LRKSRKMSPP--YRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQE 95

Query: 97  VHHQGI 102
            HH G+
Sbjct: 96  AHHNGM 101


>gi|282897015|ref|ZP_06305017.1| ATP-dependent Clp protease adaptor protein ClpS [Raphidiopsis
           brookii D9]
 gi|281197667|gb|EFA72561.1| ATP-dependent Clp protease adaptor protein ClpS [Raphidiopsis
           brookii D9]
          Length = 93

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK-DHETAKCIMLKVHHQGIGECGV 107
           + S+  ++   YRVLL ND+Y  ME+V+ VL +         A  IM++ H  G+     
Sbjct: 8   KPSTTRKLAPRYRVLLHNDDYNSMEYVVQVLLSTIPSLTQPQAVTIMMEAHSNGLALVIS 67

Query: 108 YAYEIAE 114
            A E AE
Sbjct: 68  CALEHAE 74


>gi|126657545|ref|ZP_01728701.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp.
           CCY0110]
 gi|172037153|ref|YP_001803654.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp.
           ATCC 51142]
 gi|126621249|gb|EAZ91962.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp.
           CCY0110]
 gi|171698607|gb|ACB51588.1| putative ATP-dependent Clp protease, adaptor protein [Cyanothece
           sp. ATCC 51142]
          Length = 97

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 51  SSKVRVPKL-YRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           +S VR P   YRVLL ND++  ME+V+  L Q         A  IM++ H  G       
Sbjct: 13  TSTVRKPAPRYRVLLHNDDFNSMEYVVQTLMQTVSGMTQPQAVDIMMEAHTNGTALVITC 72

Query: 109 AYEIAE 114
           A E AE
Sbjct: 73  ALEPAE 78


>gi|17231817|ref|NP_488365.1| ATP-dependent Clp protease adaptor protein ClpS [Nostoc sp. PCC
           7120]
 gi|17133461|dbj|BAB76024.1| asl4325 [Nostoc sp. PCC 7120]
          Length = 93

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 47  EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK-DHETAKCIMLKVHHQGIGEC 105
           E R +S+   P+ YRVLL ND++  ME+V+ VL           A  IM++ H  G+   
Sbjct: 7   EKRSTSRKLAPR-YRVLLHNDDHNSMEYVVQVLITTVPSLTQPQAVSIMMEAHTNGLALV 65

Query: 106 GVYAYEIAE 114
              A E AE
Sbjct: 66  ITCAQEHAE 74


>gi|115610667|ref|XP_780182.2| PREDICTED: similar to ENSANGP00000004936 [Strongylocentrotus
           purpuratus]
 gi|115958661|ref|XP_001194023.1| PREDICTED: similar to ENSANGP00000004936 [Strongylocentrotus
           purpuratus]
          Length = 694

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 31  RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
           RMN+ G+ E+D+CL+ E+++S +   P +   L  N N   +E +  V+     KDH  +
Sbjct: 560 RMNENGLIEYDSCLEMELQYSGEKGGPSVTETLYRNKN--ALETIFRVMD----KDH--S 611

Query: 91  KCIMLK 96
            CI ++
Sbjct: 612 GCISME 617


>gi|302761288|ref|XP_002964066.1| hypothetical protein SELMODRAFT_142341 [Selaginella moellendorffii]
 gi|302787370|ref|XP_002975455.1| hypothetical protein SELMODRAFT_150531 [Selaginella moellendorffii]
 gi|300157029|gb|EFJ23656.1| hypothetical protein SELMODRAFT_150531 [Selaginella moellendorffii]
 gi|300167795|gb|EFJ34399.1| hypothetical protein SELMODRAFT_142341 [Selaginella moellendorffii]
          Length = 164

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 45  DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK-DHETAKCIMLKVHHQGIG 103
           +SE     K ++   YRV+L NDN+   E+V+ VL         + A  IM + HH G+ 
Sbjct: 71  ESEFDLRKKKKMAPPYRVILHNDNFNRREYVVQVLMKVIPGMTLDNAVNIMQEAHHNGLS 130

Query: 104 ECGVYAYEIAEMKVNQV 120
              V + E AE    Q+
Sbjct: 131 VVIVCSQEDAEEHCTQL 147


>gi|295836847|ref|ZP_06823780.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces sp.
           SPB74]
 gi|197699546|gb|EDY46479.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces sp.
           SPB74]
          Length = 102

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 45  DSEVRFSSKVRVPKLYRVLLV-NDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIG 103
           D+E   SS V  P L  + LV ND    M +V +V Q++F    + A  +ML VH++G  
Sbjct: 13  DAEAE-SSVVTEPDLLWITLVHNDPVNLMSYVTYVFQSYFGYSKDKATKLMLDVHNKGRA 71

Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
                + E  E  V Q M     H Y L   ++Q
Sbjct: 72  VVSSGSREEMERDV-QAM-----HGYGLWATLQQ 99


>gi|124024066|ref|YP_001018373.1| ATP-dependent Clp protease adaptor protein ClpS [Prochlorococcus
           marinus str. MIT 9303]
 gi|123964352|gb|ABM79108.1| Uncharacterized conserved protein [Prochlorococcus marinus str. MIT
           9303]
          Length = 120

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 60  YRVLLVNDNYTPMEFVIHVLQNFFYK-DHETAKCIMLKVHHQGIGECGVYAYEIAE 114
           Y+VLL ND    ME+V+  LQ    +   + A  +ML+ H+ G+G   V   E AE
Sbjct: 46  YKVLLHNDPVNSMEYVVVTLQQVVPQLSEQDAMAVMLEAHNTGVGLVIVCDLEPAE 101


>gi|297737852|emb|CBI27053.3| unnamed protein product [Vitis vinifera]
          Length = 127

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 12/59 (20%)

Query: 38  AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           +EFD      +R S K+  P  YRV+L NDNY   E+V+ VL     +DH    C+ L+
Sbjct: 66  SEFD------LRKSRKIAPP--YRVILHNDNYNKREYVVQVLMKADAEDH----CMQLR 112


>gi|33864059|ref|NP_895619.1| ATP-dependent Clp protease adaptor protein ClpS [Prochlorococcus
           marinus str. MIT 9313]
 gi|33635643|emb|CAE21967.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9313]
          Length = 130

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 60  YRVLLVNDNYTPMEFVIHVLQNFFYK-DHETAKCIMLKVHHQGIGECGVYAYEIAE 114
           Y+VLL ND    ME+V+  LQ    +   + A  +ML+ H+ G+G   V   E AE
Sbjct: 56  YKVLLHNDPVNSMEYVVVTLQQVVPQLSEQDAMAVMLEAHNTGVGLVIVCDLEPAE 111


>gi|162449014|ref|YP_001611381.1| hypothetical protein sce0744 [Sorangium cellulosum 'So ce 56']
 gi|161159596|emb|CAN90901.1| hypothetical protein predicted by Glimmer/Critica [Sorangium
           cellulosum 'So ce 56']
          Length = 285

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 35/78 (44%)

Query: 58  KLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKV 117
           +L  V+  ND+ T ME V  +L + F  D   A   ML VH  G    G Y  + A   +
Sbjct: 176 ELVEVVFWNDDVTKMEAVQRLLVDCFGMDEVEATHFMLTVHFAGSAAAGPYRPDTAAALL 235

Query: 118 NQVMNYSRQHQYPLQCIM 135
            +    +R+   P++  +
Sbjct: 236 ARATQVARERGMPIRITL 253


>gi|189218668|ref|YP_001939309.1| ATP-dependent Clp protease adaptor protein clpS [Methylacidiphilum
           infernorum V4]
 gi|189185526|gb|ACD82711.1| ATP-dependent Clp protease adaptor protein clpS [Methylacidiphilum
           infernorum V4]
          Length = 108

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 6/80 (7%)

Query: 58  KLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKV 117
           +L+ V++ ND    M +V++V Q       + A   ML+VH++G         E AE+ V
Sbjct: 34  QLWGVIVWNDPINLMSYVVYVFQRVLKMSKQDATRHMLEVHNKGKSMVAKETKEKAELLV 93

Query: 118 NQVMNYSRQHQYPLQCIMEQ 137
           +Q+  +       LQ  ME+
Sbjct: 94  HQLQGFG------LQATMEK 107


>gi|88807954|ref|ZP_01123465.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
           WH 7805]
 gi|88787993|gb|EAR19149.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
           WH 7805]
          Length = 104

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 60  YRVLLVNDNYTPMEFVIHVLQNFFYK-DHETAKCIMLKVHHQGIGECGVYAYEIAE 114
           Y+VLL ND    ME+V+  L+    +   + A  +ML+ H+ G+G   V   E AE
Sbjct: 30  YKVLLHNDPVNSMEYVVSTLRQVVPQLSEQDAMAVMLEAHNTGVGLVIVCDLEPAE 85


>gi|148238705|ref|YP_001224092.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
           WH 7803]
 gi|147847244|emb|CAK22795.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
           WH 7803]
          Length = 106

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 60  YRVLLVNDNYTPMEFVIHVLQNFFYK-DHETAKCIMLKVHHQGIGECGVYAYEIAE 114
           Y+VLL ND    ME+V+  L+    +   + A  +ML+ H+ G+G   V   E AE
Sbjct: 32  YKVLLHNDPVNSMEYVVSTLRQVVPQLSEQDAMAVMLEAHNTGVGLVIVCDLEPAE 87


>gi|218246012|ref|YP_002371383.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp. PCC
           8801]
 gi|257059062|ref|YP_003136950.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp. PCC
           8802]
 gi|218166490|gb|ACK65227.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp. PCC
           8801]
 gi|256589228|gb|ACV00115.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp. PCC
           8802]
          Length = 97

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 51  SSKVRVPKL-YRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           S+ VR P   YRVLL ND++  ME+V+  L Q         A  IM++ H  G       
Sbjct: 13  SATVRKPAPRYRVLLHNDDFNSMEYVVQTLMQTVAGMTQPQAVDIMMEAHTNGTALVITC 72

Query: 109 AYEIAEMKVNQVMNY 123
           A E AE     + N+
Sbjct: 73  ALEHAEFYCETLKNH 87


>gi|260906183|ref|ZP_05914505.1| ATP-dependent Clp protease adaptor protein ClpS [Brevibacterium
           linens BL2]
          Length = 101

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 28/58 (48%)

Query: 44  LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
           L+ EV         K ++ ++ ND    M +V +V Q +F    E A  +ML+VH  G
Sbjct: 9   LEPEVDIRPVTEQAKPWKTVVFNDPVNLMSYVSYVFQAYFGYSTEKAHSLMLEVHENG 66


>gi|87125032|ref|ZP_01080879.1| hypothetical protein RS9917_03483 [Synechococcus sp. RS9917]
 gi|86167352|gb|EAQ68612.1| hypothetical protein RS9917_03483 [Synechococcus sp. RS9917]
          Length = 111

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 60  YRVLLVNDNYTPMEFVIHVLQNFFYK-DHETAKCIMLKVHHQGIGECGVYAYEIAE 114
           Y+VLL ND    ME+V+  L+    +   + A  +ML+ H+ G+G   V   E AE
Sbjct: 37  YKVLLHNDPVNTMEYVVTTLRQVVPQLSEQDAMAVMLEAHNTGVGLVIVCDLEPAE 92


>gi|113474895|ref|YP_720956.1| ATP-dependent Clp protease adaptor protein ClpS [Trichodesmium
           erythraeum IMS101]
 gi|110165943|gb|ABG50483.1| ATP-dependent Clp protease adaptor protein ClpS [Trichodesmium
           erythraeum IMS101]
          Length = 95

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 60  YRVLLVNDNYTPMEFVIHVLQNFFYK-DHETAKCIMLKVHHQGIGECGVYAYEIAE 114
           YRVLL ND++  ME+V+  L           A  IM++ H  GI    + A E AE
Sbjct: 21  YRVLLHNDDFNSMEYVVQTLMKTVPSLTQPQAVNIMMEAHSNGIALVIICALEPAE 76


>gi|86607127|ref|YP_475890.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
           JA-3-3Ab]
 gi|86555669|gb|ABD00627.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
           JA-3-3Ab]
          Length = 93

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 58  KLYRVLLVNDNYTPMEFVIHVLQNFFYKD-HETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
            +YRVLL ND+   ME+V+ VL           A  IML+ H+ G+    V   E AE  
Sbjct: 17  PMYRVLLHNDDVNTMEYVVQVLVKVIPSMLPPQATEIMLEAHNNGVAVVIVVPREHAEFY 76

Query: 117 VNQVMNYSRQH 127
             Q+    RQH
Sbjct: 77  CEQL----RQH 83


>gi|311743607|ref|ZP_07717413.1| ATP-dependent Clp protease adaptor protein ClpS [Aeromicrobium
           marinum DSM 15272]
 gi|311312737|gb|EFQ82648.1| ATP-dependent Clp protease adaptor protein ClpS [Aeromicrobium
           marinum DSM 15272]
          Length = 101

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 47  EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
           E      V +   +  ++ ND    M +V +V +N+F    E A  +ML VHH+G     
Sbjct: 14  EPEVDEAVELEAPWVTIVWNDPVNLMSYVSYVFRNYFGYTDEKATELMLAVHHEGKAVVS 73

Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             + E  E  V Q M     H+Y L   +++
Sbjct: 74  TGSREQMERHV-QAM-----HEYGLWATLQR 98


>gi|225423913|ref|XP_002281884.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147853628|emb|CAN80233.1| hypothetical protein VITISV_037190 [Vitis vinifera]
          Length = 157

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 9/66 (13%)

Query: 38  AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK-DHETAKCIMLK 96
           +EFD      +R S K+  P  YRV+L NDNY   E+V+ VL         + A  IM +
Sbjct: 66  SEFD------LRKSRKIAPP--YRVILHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQE 117

Query: 97  VHHQGI 102
            H+ G+
Sbjct: 118 AHYNGL 123


>gi|171910264|ref|ZP_02925734.1| ATP-dependent Clp protease adaptor protein ClpS [Verrucomicrobium
           spinosum DSM 4136]
          Length = 98

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFF-YKDHETAKCIMLKVHHQGIGECG 106
           V     V +   + V++ ND    M +V HV++  F Y D E A+ +ML+VH +G  +  
Sbjct: 13  VETDPSVALDSPWHVIIHNDPVNLMSYVAHVIRKIFGYPDKE-AQRLMLQVHQEGRSQVW 71

Query: 107 VYAYEIAEMKVNQVMNY 123
               E AE  V ++  +
Sbjct: 72  TGRREKAEHYVRELHGH 88


>gi|255576515|ref|XP_002529149.1| ATP-dependent Clp protease adaptor protein clpS, putative [Ricinus
           communis]
 gi|223531428|gb|EEF33262.1| ATP-dependent Clp protease adaptor protein clpS, putative [Ricinus
           communis]
          Length = 120

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 9/66 (13%)

Query: 38  AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK-DHETAKCIMLK 96
           +EFD      +R S K   P  YRV+L NDNY   E+V+ VL         + A  IM +
Sbjct: 29  SEFD------LRKSRKTAPP--YRVILHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQE 80

Query: 97  VHHQGI 102
            H+ G+
Sbjct: 81  AHYNGL 86


>gi|224001838|ref|XP_002290591.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220974013|gb|EED92343.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 147

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 25/56 (44%)

Query: 60  YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEM 115
           + V L ND     EFV   L      D   A  +M+  H QG+   G Y  E+AE+
Sbjct: 73  WLVRLYNDPMNKREFVARCLMEICGLDDGAAYTVMMHAHQQGLSVIGKYHREVAEL 128


>gi|224099343|ref|XP_002311446.1| predicted protein [Populus trichocarpa]
 gi|118481362|gb|ABK92624.1| unknown [Populus trichocarpa]
 gi|222851266|gb|EEE88813.1| predicted protein [Populus trichocarpa]
          Length = 158

 Score = 33.5 bits (75), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 9/66 (13%)

Query: 38  AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK-DHETAKCIMLK 96
           +EFD      +R S K+  P  YRV+L NDNY   E+V+ VL         + A  IM +
Sbjct: 67  SEFD------LRKSKKMAPP--YRVMLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQE 118

Query: 97  VHHQGI 102
            H+ G+
Sbjct: 119 AHYNGL 124


Searching..................................................done


Results from round 2




>gi|254780164|ref|YP_003064577.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254039841|gb|ACT56637.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 138

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 138/138 (100%), Positives = 138/138 (100%)

Query: 1   MYLFDDGSMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLY 60
           MYLFDDGSMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLY
Sbjct: 1   MYLFDDGSMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLY 60

Query: 61  RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQV 120
           RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQV
Sbjct: 61  RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQV 120

Query: 121 MNYSRQHQYPLQCIMEQK 138
           MNYSRQHQYPLQCIMEQK
Sbjct: 121 MNYSRQHQYPLQCIMEQK 138


>gi|300022147|ref|YP_003754758.1| ATP-dependent Clp protease adaptor protein ClpS [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299523968|gb|ADJ22437.1| ATP-dependent Clp protease adaptor protein ClpS [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 129

 Score =  188 bits (478), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 63/124 (50%), Positives = 80/124 (64%), Gaps = 4/124 (3%)

Query: 19  LALMSFIFMADSRMNKKGIAEFDNCLDSEV----RFSSKVRVPKLYRVLLVNDNYTPMEF 74
           L + + I MA       G    D   DS+     +   K + P LY+VLL+ND++TPMEF
Sbjct: 6   LPIAALIRMAGKDDPPNGPGRDDRDGDSKTGIVTKTRPKTKKPSLYKVLLLNDDFTPMEF 65

Query: 75  VIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCI 134
           V+ VLQ FF K  E A  IML VHH+G+G CGVY YEIAE KV QVM++SRQH +PLQC 
Sbjct: 66  VVLVLQRFFNKGQEDATRIMLHVHHKGVGICGVYTYEIAETKVTQVMDFSRQHGHPLQCT 125

Query: 135 MEQK 138
           ME++
Sbjct: 126 MEKE 129


>gi|148553784|ref|YP_001261366.1| ATP-dependent Clp protease adaptor protein ClpS [Sphingomonas
           wittichii RW1]
 gi|148498974|gb|ABQ67228.1| ATP-dependent Clp protease adaptor protein ClpS [Sphingomonas
           wittichii RW1]
          Length = 131

 Score =  183 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 49/120 (40%), Positives = 78/120 (65%)

Query: 18  ILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIH 77
           I++  +F         +K   +    L    R  ++ + P  Y+VL++ND+YTPMEFV+ 
Sbjct: 11  IMSHSAFTTAPTGMATRKDGDDNGTGLGLATRTRTRTKKPSPYKVLMLNDDYTPMEFVVL 70

Query: 78  VLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            LQ FF  + E A  +ML VH +G+G CGV++YE+AE KV+QV++++RQ+Q+PLQC +E+
Sbjct: 71  CLQRFFRMNLEDATRVMLHVHQKGVGVCGVFSYEVAETKVSQVVDFARQNQHPLQCTLEK 130


>gi|330993783|ref|ZP_08317715.1| ATP-dependent Clp protease adapter protein ClpS [Gluconacetobacter
           sp. SXCC-1]
 gi|329759051|gb|EGG75563.1| ATP-dependent Clp protease adapter protein ClpS [Gluconacetobacter
           sp. SXCC-1]
          Length = 175

 Score =  181 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 54/131 (41%), Positives = 78/131 (59%), Gaps = 6/131 (4%)

Query: 13  VKRDGILALMSFIFMADSRMNKKG------IAEFDNCLDSEVRFSSKVRVPKLYRVLLVN 66
             R    A        ++   + G          D  +D  +    + R P +Y+VL++N
Sbjct: 44  ASRPAGAAARPLGHGGNTPPRRNGGGQDSPPGNDDGMIDVVIHTRPQTRKPAMYKVLMLN 103

Query: 67  DNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQ 126
           D+YTPMEFV+HVL+ FF K+ E A  IML VH +G+G CGV+ YE+AE KV QVM+ +RQ
Sbjct: 104 DDYTPMEFVVHVLERFFQKNREEATDIMLHVHKRGVGVCGVFTYEVAETKVTQVMDLARQ 163

Query: 127 HQYPLQCIMEQ 137
           +Q+PLQC +E+
Sbjct: 164 NQHPLQCTIEK 174


>gi|296533024|ref|ZP_06895672.1| ATP-dependent Clp protease [Roseomonas cervicalis ATCC 49957]
 gi|296266653|gb|EFH12630.1| ATP-dependent Clp protease [Roseomonas cervicalis ATCC 49957]
          Length = 120

 Score =  180 bits (458), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 55/110 (50%), Positives = 75/110 (68%)

Query: 29  DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
           DS  N  G           V+   + R P +Y+VL++ND+YTPMEFV+HVL+ FF K+ E
Sbjct: 11  DSGQNGNGQTGDGAATGVVVKTRPRTRKPAMYKVLMLNDDYTPMEFVVHVLERFFQKNRE 70

Query: 89  TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            A  IML VH +G+G CGVY YE+AE KV QVM+ +RQ+Q+PLQC +E++
Sbjct: 71  EATRIMLHVHRRGVGVCGVYTYEVAETKVTQVMDLARQNQHPLQCTIEKE 120


>gi|94495922|ref|ZP_01302501.1| hypothetical protein SKA58_15107 [Sphingomonas sp. SKA58]
 gi|94424614|gb|EAT09636.1| hypothetical protein SKA58_15107 [Sphingomonas sp. SKA58]
          Length = 124

 Score =  180 bits (458), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 53/122 (43%), Positives = 83/122 (68%)

Query: 16  DGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFV 75
           + ++     + MA    + +G       +    R  ++ + P LY+VL++ND+YTPMEFV
Sbjct: 2   NSLITASWPVNMAGRDQDDQGEGPGGPNVGIATRTRTRTKKPSLYKVLMLNDDYTPMEFV 61

Query: 76  IHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIM 135
           +HVLQ+FF  D E A  +ML VH +G+G CG+++YE+AE KVNQVM+++RQ+Q+PLQC +
Sbjct: 62  VHVLQSFFRMDMEEATRVMLHVHQRGVGICGIFSYEVAETKVNQVMDFARQNQHPLQCTL 121

Query: 136 EQ 137
           E+
Sbjct: 122 EK 123


>gi|295917937|gb|ADG60244.1| ATP-dependent Clp protease adaptor protein ClpS [uncultured
           bacterium]
          Length = 133

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/123 (43%), Positives = 80/123 (65%), Gaps = 5/123 (4%)

Query: 19  LALMSFIFMADSRMNKKGIAEFDNCLDSE----VRFSSKVRVPKLYRVLLVNDNYTPMEF 74
           LAL+  + ++D      G    D     +     R  +K + P  Y+VL++ND+YTPMEF
Sbjct: 11  LALLP-VRLSDEDEGGSGPGNDDGDGQGQVGLATRTRAKPKKPSQYKVLMLNDDYTPMEF 69

Query: 75  VIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCI 134
           V+ VL+ FF  D E A  +ML VH +G+G CG++ YE+AE KV+QVM+++RQ+Q+PLQC 
Sbjct: 70  VVMVLKRFFRMDLEQATRVMLHVHQRGVGVCGIFPYEVAETKVSQVMDFARQNQHPLQCT 129

Query: 135 MEQ 137
           +E+
Sbjct: 130 LEK 132


>gi|294013244|ref|YP_003546704.1| ATP-dependent Clp protease adaptor protein ClpS [Sphingobium
           japonicum UT26S]
 gi|292676574|dbj|BAI98092.1| ATP-dependent Clp protease adaptor protein ClpS [Sphingobium
           japonicum UT26S]
          Length = 135

 Score =  178 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 53/113 (46%), Positives = 79/113 (69%)

Query: 25  IFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFY 84
           + MA    + +G       +    R  ++ + P LY+VL++ND+YTPMEFV+HVLQ FF 
Sbjct: 22  VTMAGRDQDDQGDGSGGPNVGIATRTRARTKKPSLYKVLMLNDDYTPMEFVVHVLQQFFR 81

Query: 85  KDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            D E A  +ML VH +G+G CG+++YE+AE KVNQVM+++RQ+Q+PLQC +E+
Sbjct: 82  MDMEEATRVMLHVHQRGVGVCGIFSYEVAETKVNQVMDFARQNQHPLQCTLEK 134


>gi|114328313|ref|YP_745470.1| ATP-dependent Clp protease adaptor protein ClpS [Granulibacter
           bethesdensis CGDNIH1]
 gi|114316487|gb|ABI62547.1| ATP-dependent Clp protease adaptor protein ClpS [Granulibacter
           bethesdensis CGDNIH1]
          Length = 178

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 56/129 (43%), Positives = 77/129 (59%), Gaps = 3/129 (2%)

Query: 13  VKRDGILALMSFIFMAD---SRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNY 69
            KR  +        M D   S  + +G A          +     R P LY+VL++ND+Y
Sbjct: 50  PKRRMVRLHDGKNTMIDIHGSDEHGQGHAGDGTSTGLIAKTRPATRKPSLYKVLMLNDDY 109

Query: 70  TPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQY 129
           TPMEFV+HVL+ FF K  E A  IML VH +G+G CGV+ YE+AE KV QVM+ +R +Q+
Sbjct: 110 TPMEFVVHVLERFFQKTREEATQIMLHVHRRGVGVCGVFTYEVAETKVTQVMDLARHNQH 169

Query: 130 PLQCIMEQK 138
           PLQC +E++
Sbjct: 170 PLQCTIEKE 178


>gi|46201030|ref|ZP_00055925.2| COG2127: Uncharacterized conserved protein [Magnetospirillum
           magnetotacticum MS-1]
          Length = 110

 Score =  177 bits (449), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 52/112 (46%), Positives = 80/112 (71%), Gaps = 2/112 (1%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           M+++  +K+G  +    +   ++   K + P +Y+VL++ND+YTPMEFV+HVL+ FF K 
Sbjct: 1   MSENGNDKQGGDDGQTGV--VIKTRPKTKKPSMYKVLMLNDDYTPMEFVVHVLERFFNKS 58

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            E A  +ML VH +G+G CGVY YE+AE KV QVM+ +RQ+Q+PLQC +E++
Sbjct: 59  REDATRVMLNVHTRGVGICGVYTYEVAETKVTQVMDLARQNQHPLQCTIEKE 110


>gi|144898735|emb|CAM75599.1| ATP-dependent Clp protease adaptor protein clpS [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 146

 Score =  177 bits (449), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 60/137 (43%), Positives = 89/137 (64%), Gaps = 5/137 (3%)

Query: 1   MYLFDDGSMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLY 60
           ++ F D + Y R  R  +   ++   M+D   +K+     DN     ++   K + P +Y
Sbjct: 14  LFSFCDFAQYDR--RVPMGTNLANETMSDHNDDKQ---NGDNQTGVVIKTRPKTKKPSMY 68

Query: 61  RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQV 120
           +VL++ND+YTPMEFV+HVL++FF K  E A  IML VH +G+G CGVY YE+AE KV QV
Sbjct: 69  KVLMLNDDYTPMEFVVHVLEHFFNKSREDATRIMLHVHTRGVGICGVYTYEVAETKVTQV 128

Query: 121 MNYSRQHQYPLQCIMEQ 137
           M+ +RQ+Q+PLQC +E+
Sbjct: 129 MDLARQNQHPLQCTIEK 145


>gi|85709342|ref|ZP_01040407.1| ATP-dependent Clp protease adaptor protein ClpS [Erythrobacter sp.
           NAP1]
 gi|85688052|gb|EAQ28056.1| ATP-dependent Clp protease adaptor protein ClpS [Erythrobacter sp.
           NAP1]
          Length = 140

 Score =  176 bits (448), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 53/121 (43%), Positives = 81/121 (66%), Gaps = 3/121 (2%)

Query: 20  ALMSFIFMADSRMNKKGIAEFDNC---LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVI 76
           A  + + +AD    K G ++ D     +    +  +K + P  Y+VL++ND+YTPMEFV+
Sbjct: 19  AAFAAVRLADDDEKKDGGSDTDEGDGQVVIATKTRTKPKKPSQYKVLMLNDDYTPMEFVV 78

Query: 77  HVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
            VL+ FF  D E A  +ML VH +G+G CG++ YE+AE KVNQVM+++RQ+Q+PLQC +E
Sbjct: 79  MVLKRFFGMDLEAATRVMLHVHQKGVGVCGIFPYEVAETKVNQVMDFARQNQHPLQCTLE 138

Query: 137 Q 137
           +
Sbjct: 139 K 139


>gi|182678642|ref|YP_001832788.1| ATP-dependent Clp protease adaptor protein ClpS [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182634525|gb|ACB95299.1| ATP-dependent Clp protease adaptor protein ClpS [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 137

 Score =  176 bits (448), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 58/131 (44%), Positives = 84/131 (64%)

Query: 8   SMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVND 67
           S   R      LA+ + + +  +  + +   +  +      R  ++ R P +YRVLL+ND
Sbjct: 7   SAIRRPPLLARLAVFAGLRIRGAGKDPQKGGDGGSGTAVITRPKTQTRRPSMYRVLLLND 66

Query: 68  NYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQH 127
           +YTPMEFV+ VL+ +F K  E A  IML VH  G+GECG++ YE+AE KV QVM+Y+R+H
Sbjct: 67  DYTPMEFVVSVLKKYFNKGPEEATRIMLHVHQHGVGECGIFTYEVAETKVTQVMDYARKH 126

Query: 128 QYPLQCIMEQK 138
           Q+PLQCIME+K
Sbjct: 127 QHPLQCIMEKK 137


>gi|170747222|ref|YP_001753482.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653744|gb|ACB22799.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
           radiotolerans JCM 2831]
          Length = 128

 Score =  176 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 62/128 (48%), Positives = 81/128 (63%), Gaps = 10/128 (7%)

Query: 11  HRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYT 70
           HR  R  + A  S     D R N   I           R   + + P LYRVLL+ND+YT
Sbjct: 11  HRPARIAVTASGSRAPGGDDRSNTAII----------TRTKPRTKRPSLYRVLLLNDDYT 60

Query: 71  PMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYP 130
           PMEFV+ V++ FF K HE A  IM+ VH  G+GECGV+ YE+AE KV QVM+++R+HQ+P
Sbjct: 61  PMEFVVLVVERFFNKSHEDAYHIMMHVHQNGVGECGVFTYEVAETKVTQVMDFARKHQHP 120

Query: 131 LQCIMEQK 138
           LQC+ME+K
Sbjct: 121 LQCVMEKK 128


>gi|315122668|ref|YP_004063157.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313496070|gb|ADR52669.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 120

 Score =  176 bits (447), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 88/120 (73%), Positives = 107/120 (89%)

Query: 19  LALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHV 78
           +  +SF+FMA + MN+KG+A  D+C++++   SSKVR P+LYRVLLVND+YTPMEFVIHV
Sbjct: 1   MVAISFVFMAKNHMNEKGVARTDSCINTKEEISSKVRAPRLYRVLLVNDDYTPMEFVIHV 60

Query: 79  LQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           LQ FF+KDHE++K IMLK+HHQGIGECGVYAYEIAEMKVNQVMNYSRQ+Q+PLQCIME K
Sbjct: 61  LQKFFHKDHESSKSIMLKIHHQGIGECGVYAYEIAEMKVNQVMNYSRQNQHPLQCIMEHK 120


>gi|307294031|ref|ZP_07573875.1| ATP-dependent Clp protease adaptor protein ClpS [Sphingobium
           chlorophenolicum L-1]
 gi|306880182|gb|EFN11399.1| ATP-dependent Clp protease adaptor protein ClpS [Sphingobium
           chlorophenolicum L-1]
          Length = 112

 Score =  176 bits (447), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 53/111 (47%), Positives = 78/111 (70%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           MA    + +G       +    R  ++ + P LY+VL++ND+YTPMEFV+HVLQ FF  D
Sbjct: 1   MAGRDQDDQGDGSGGPNVGIATRTRARTKKPSLYKVLMLNDDYTPMEFVVHVLQQFFRMD 60

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            E A  +ML VH +G+G CG+++YE+AE KVNQVM+++RQ+Q+PLQC +E+
Sbjct: 61  MEEATRVMLHVHQRGVGVCGIFSYEVAETKVNQVMDFARQNQHPLQCTLEK 111


>gi|161898748|ref|YP_191042.2| ATP-dependent Clp protease adaptor protein ClpS [Gluconobacter
           oxydans 621H]
          Length = 143

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/105 (49%), Positives = 75/105 (71%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
              G  + D  +   VR  ++ R P +Y+VL++ND+YTPMEFV+HVL+ FF K  + A  
Sbjct: 38  PGNGDGDQDLDIGVVVRPRTRTRKPSMYKVLMLNDDYTPMEFVVHVLERFFAKTRDEATS 97

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           IML+VH +G+G CGV+ YE+AE KV QVM+ +RQ+Q+PLQC +E+
Sbjct: 98  IMLQVHQRGVGICGVFTYEVAESKVTQVMDLARQNQHPLQCTIEK 142


>gi|312113135|ref|YP_004010731.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311218264|gb|ADP69632.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 128

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 59/115 (51%), Positives = 79/115 (68%), Gaps = 3/115 (2%)

Query: 26  FMADSRMNKKGIAEFDNCLDS--EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFF 83
            M  +     G  + DN L +    +   K + P LY+VLL+ND+YTPMEFV++VL+ FF
Sbjct: 15  RMVAAMAGNNGFKD-DNGLKTGAVTKTRPKTKRPSLYKVLLLNDDYTPMEFVVYVLERFF 73

Query: 84  YKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            K HE A  IM+ VH +G+G CGVY YE+AE KV QVMN++RQHQ+PLQC ME++
Sbjct: 74  NKPHEEATLIMMHVHQKGVGICGVYTYEVAETKVTQVMNFARQHQHPLQCTMEKE 128


>gi|296283029|ref|ZP_06861027.1| ATP-dependent Clp protease adaptor protein ClpS [Citromicrobium
           bathyomarinum JL354]
          Length = 140

 Score =  175 bits (445), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/126 (40%), Positives = 79/126 (62%), Gaps = 1/126 (0%)

Query: 12  RVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTP 71
           R +    L   +     +    + G    D  +    +  +K + P  Y+VL++ND+YTP
Sbjct: 15  RPRDAAPLPSRAPTAAGNDDHGEDGRP-ADPNVGVATKTRAKPKKPSQYKVLMLNDDYTP 73

Query: 72  MEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPL 131
           MEFV+ VL+ FF  D E A  +ML+VH +G+G CG++ YE+AE KVNQVM+++RQ+Q+PL
Sbjct: 74  MEFVVIVLKRFFRMDMEEATRVMLQVHQRGVGVCGIFPYEVAETKVNQVMDFARQNQHPL 133

Query: 132 QCIMEQ 137
           QC +E+
Sbjct: 134 QCTLEK 139


>gi|16126706|ref|NP_421270.1| ATP-dependent Clp protease adaptor protein ClpS [Caulobacter
           crescentus CB15]
 gi|21542323|sp|Q9A5I0|CLPS_CAUCR RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|13424016|gb|AAK24438.1| conserved hypothetical protein [Caulobacter crescentus CB15]
          Length = 119

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/111 (48%), Positives = 72/111 (64%), Gaps = 3/111 (2%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           MA+ +   +G                K + P LYRVL++ND+YTPMEFV++VL+ FF K 
Sbjct: 11  MAERKQGGQG---NGVGSSVVTEVKPKTQKPSLYRVLILNDDYTPMEFVVYVLERFFNKS 67

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            E A  IML VH  G+G CGVY YE+AE KV QV++ +R+HQ+PLQC ME+
Sbjct: 68  REDATRIMLHVHQNGVGVCGVYTYEVAETKVAQVIDSARRHQHPLQCTMEK 118


>gi|209545021|ref|YP_002277250.1| ATP-dependent Clp protease adaptor protein ClpS [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532698|gb|ACI52635.1| ATP-dependent Clp protease adaptor protein ClpS [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 135

 Score =  174 bits (443), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/125 (43%), Positives = 78/125 (62%), Gaps = 2/125 (1%)

Query: 15  RDGILALMSFIFMADSRMNKKGIAEFDNC--LDSEVRFSSKVRVPKLYRVLLVNDNYTPM 72
           R    A            N+ G ++  +   +   VR   + R P +Y+VL++ND+YTPM
Sbjct: 10  RGHTRAHGGNSPTRREGGNQDGQSDNPDSPTIGVVVRTRPQTRKPAMYKVLMLNDDYTPM 69

Query: 73  EFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQ 132
           EFV+HVL+ FF K  + A  IML VH +G+G CGV+ YE+AE KV QVM+ +RQ+Q+PLQ
Sbjct: 70  EFVVHVLERFFQKSRDEATDIMLHVHKRGVGVCGVFTYEVAETKVTQVMDLARQNQHPLQ 129

Query: 133 CIMEQ 137
           C +E+
Sbjct: 130 CTIEK 134


>gi|86749515|ref|YP_486011.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris HaA2]
 gi|86572543|gb|ABD07100.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris HaA2]
          Length = 132

 Score =  174 bits (443), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/124 (49%), Positives = 81/124 (65%), Gaps = 1/124 (0%)

Query: 16  DGILALMSFIFMADSRMNKKGIAEFDN-CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEF 74
           D + A +   + A       G A   +       +   K + P LYRVL++ND+YTPMEF
Sbjct: 9   DSVPASVGLSYRATRMAGDGGRAGSGSPTTSVITKVKPKTKRPNLYRVLILNDDYTPMEF 68

Query: 75  VIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCI 134
           V+HVL+ FF  D E A  +ML VHH GIGECGV+ YEIAE KV QVM+++R+HQ+PLQC+
Sbjct: 69  VVHVLEKFFQMDIEAATKVMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCV 128

Query: 135 MEQK 138
           ME+K
Sbjct: 129 MEKK 132


>gi|162149242|ref|YP_001603703.1| ATP-dependent Clp protease adaptor protein ClpS [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787819|emb|CAP57417.1| putative ATP-dependent Clp protease adaptor protein clpS
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 146

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/125 (43%), Positives = 78/125 (62%), Gaps = 2/125 (1%)

Query: 15  RDGILALMSFIFMADSRMNKKGIAEFDNC--LDSEVRFSSKVRVPKLYRVLLVNDNYTPM 72
           R    A            N+ G ++  +   +   VR   + R P +Y+VL++ND+YTPM
Sbjct: 21  RGHTRAHGGNSPTRREGGNQDGQSDNPDSPTIGVVVRTRPQTRKPAMYKVLMLNDDYTPM 80

Query: 73  EFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQ 132
           EFV+HVL+ FF K  + A  IML VH +G+G CGV+ YE+AE KV QVM+ +RQ+Q+PLQ
Sbjct: 81  EFVVHVLERFFQKSRDEATDIMLHVHKRGVGVCGVFTYEVAETKVTQVMDLARQNQHPLQ 140

Query: 133 CIMEQ 137
           C +E+
Sbjct: 141 CTIEK 145


>gi|83310221|ref|YP_420485.1| ATP-dependent Clp protease adaptor protein ClpS [Magnetospirillum
           magneticum AMB-1]
 gi|123542818|sp|Q2W899|CLPS_MAGSA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|82945062|dbj|BAE49926.1| ATP-dependent Clp protease adaptor protein clpS [Magnetospirillum
           magneticum AMB-1]
          Length = 119

 Score =  174 bits (442), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/112 (45%), Positives = 79/112 (70%), Gaps = 2/112 (1%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           M+++  +K+   +    +   ++   K + P +Y+VL++ND+YTPMEFV+HVL+ FF K 
Sbjct: 10  MSENGNDKRDGDDGQTGV--VIKTRPKTKKPSMYKVLMLNDDYTPMEFVVHVLERFFNKS 67

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            E A  +ML VH +G+G CGVY YE+AE KV QVM+ +RQ+Q+PLQC +E++
Sbjct: 68  REDATRVMLHVHTRGVGICGVYTYEVAETKVTQVMDLARQNQHPLQCTIEKE 119


>gi|23502048|ref|NP_698175.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella suis
           1330]
 gi|62290083|ref|YP_221876.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus
           bv. 1 str. 9-941]
 gi|82700008|ref|YP_414582.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella
           melitensis biovar Abortus 2308]
 gi|148559927|ref|YP_001259088.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella ovis ATCC
           25840]
 gi|225627638|ref|ZP_03785675.1| ATP-dependent Clp protease adapter protein clpS [Brucella ceti str.
           Cudo]
 gi|237815589|ref|ZP_04594586.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
           str. 2308 A]
 gi|256369595|ref|YP_003107105.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella microti
           CCM 4915]
 gi|297248480|ref|ZP_06932198.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus
           bv. 5 str. B3196]
 gi|23348003|gb|AAN30090.1| conserved hypothetical protein [Brucella suis 1330]
 gi|62196215|gb|AAX74515.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
 gi|82616109|emb|CAJ11148.1| Protein of unknown function DUF174 [Brucella melitensis biovar
           Abortus 2308]
 gi|148371184|gb|ABQ61163.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella ovis ATCC
           25840]
 gi|225617643|gb|EEH14688.1| ATP-dependent Clp protease adapter protein clpS [Brucella ceti str.
           Cudo]
 gi|237788887|gb|EEP63098.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
           str. 2308 A]
 gi|255999757|gb|ACU48156.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella microti
           CCM 4915]
 gi|297175649|gb|EFH34996.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus
           bv. 5 str. B3196]
          Length = 136

 Score =  174 bits (442), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 58/106 (54%), Positives = 77/106 (72%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
              G    ++      R   K R P LYRVLL+ND+YTPMEFV+HVLQ FF K+ + A  
Sbjct: 31  KTNGGNGPESGTVVVTRTQPKTRKPSLYRVLLLNDDYTPMEFVVHVLQRFFQKNLDDATR 90

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IML VH+ G+GECGV+ YE+AE KV+QVM+++RQ+Q+PLQC+ME+K
Sbjct: 91  IMLHVHNHGVGECGVFTYEVAETKVSQVMDFARQNQHPLQCVMEKK 136


>gi|258541379|ref|YP_003186812.1| Clp protease adaptor protein ClpS [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632457|dbj|BAH98432.1| Clp protease adaptor protein ClpS [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635514|dbj|BAI01483.1| Clp protease adaptor protein ClpS [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638569|dbj|BAI04531.1| Clp protease adaptor protein ClpS [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641623|dbj|BAI07578.1| Clp protease adaptor protein ClpS [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644678|dbj|BAI10626.1| Clp protease adaptor protein ClpS [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647733|dbj|BAI13674.1| Clp protease adaptor protein ClpS [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650786|dbj|BAI16720.1| Clp protease adaptor protein ClpS [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653777|dbj|BAI19704.1| Clp protease adaptor protein ClpS [Acetobacter pasteurianus IFO
           3283-12]
          Length = 125

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 52/108 (48%), Positives = 74/108 (68%)

Query: 30  SRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
            R      ++    +   VR   K R P +Y+VL++ND+YTPMEFV++VL+ FF K+ E 
Sbjct: 17  RRGGGTDSSDDGADIGVVVRAKPKTRKPAMYKVLMLNDDYTPMEFVVYVLERFFQKNREE 76

Query: 90  AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           A  IML VH +G+G CGV+ YE+AE KV QVM+ +RQ+Q+PLQC +E+
Sbjct: 77  ATDIMLNVHRRGVGVCGVFTYEVAETKVAQVMDLARQNQHPLQCTIEK 124


>gi|239832059|ref|ZP_04680388.1| ATP-dependent Clp protease adapter protein clpS [Ochrobactrum
           intermedium LMG 3301]
 gi|239824326|gb|EEQ95894.1| ATP-dependent Clp protease adapter protein clpS [Ochrobactrum
           intermedium LMG 3301]
          Length = 148

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 58/108 (53%), Positives = 78/108 (72%)

Query: 31  RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
           +    G    +N      R   K + P LYRVLL+ND+YTPMEFV+HVLQ FF K+ + A
Sbjct: 41  QSKTDGGNGPENGTVVVTRTQPKTKKPSLYRVLLLNDDYTPMEFVVHVLQRFFQKNRDDA 100

Query: 91  KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
             IML VH+ G+GECGV+ YE+AE KV+QVM+++RQ+Q+PLQC+ME+K
Sbjct: 101 TRIMLHVHNHGVGECGVFTYEVAETKVSQVMDFARQNQHPLQCVMEKK 148


>gi|17987098|ref|NP_539732.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella
           melitensis bv. 1 str. 16M]
 gi|17982759|gb|AAL51996.1| protein ylja [Brucella melitensis bv. 1 str. 16M]
          Length = 136

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 58/106 (54%), Positives = 77/106 (72%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
              G    ++      R   K R P LYRVLL+ND+YTPMEFV+HVLQ FF K+ + A  
Sbjct: 31  KTNGGNGPESGTVVVTRTQPKTRKPSLYRVLLLNDDYTPMEFVVHVLQRFFQKNLDDATR 90

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IML VH+ G+GECGV+ YE+AE KV+QVM+++RQ+Q+PLQC+ME+K
Sbjct: 91  IMLHVHNHGVGECGVFTYEVAETKVSQVMDFARQNQHPLQCVMEKK 136


>gi|329114968|ref|ZP_08243723.1| ATP-dependent Clp protease adapter protein ClpS [Acetobacter
           pomorum DM001]
 gi|326695411|gb|EGE47097.1| ATP-dependent Clp protease adapter protein ClpS [Acetobacter
           pomorum DM001]
          Length = 117

 Score =  173 bits (440), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 52/108 (48%), Positives = 74/108 (68%)

Query: 30  SRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
            R      ++    +   VR   K R P +Y+VL++ND+YTPMEFV++VL+ FF K+ E 
Sbjct: 9   RRGGSTDSSDDGADIGVVVRAKPKTRKPAMYKVLMLNDDYTPMEFVVYVLERFFQKNREE 68

Query: 90  AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           A  IML VH +G+G CGV+ YE+AE KV QVM+ +RQ+Q+PLQC +E+
Sbjct: 69  ATDIMLNVHRRGVGVCGVFTYEVAETKVAQVMDLARQNQHPLQCTIEK 116


>gi|221235488|ref|YP_002517925.1| ATP-dependent Clp protease adaptor protein ClpS [Caulobacter
           crescentus NA1000]
 gi|254763812|sp|B8GZM8|CLPS_CAUCN RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|220964661|gb|ACL96017.1| ATP-dependent Clp protease adaptor protein ClpS [Caulobacter
           crescentus NA1000]
          Length = 109

 Score =  173 bits (440), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 54/111 (48%), Positives = 72/111 (64%), Gaps = 3/111 (2%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           MA+ +   +G                K + P LYRVL++ND+YTPMEFV++VL+ FF K 
Sbjct: 1   MAERKQGGQG---NGVGSSVVTEVKPKTQKPSLYRVLILNDDYTPMEFVVYVLERFFNKS 57

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            E A  IML VH  G+G CGVY YE+AE KV QV++ +R+HQ+PLQC ME+
Sbjct: 58  REDATRIMLHVHQNGVGVCGVYTYEVAETKVAQVIDSARRHQHPLQCTMEK 108


>gi|190891596|ref|YP_001978138.1| ATP-dependent Clp protease adaptor protein [Rhizobium etli CIAT
           652]
 gi|190696875|gb|ACE90960.1| ATP-dependent Clp protease adaptor protein [Rhizobium etli CIAT
           652]
          Length = 117

 Score =  173 bits (439), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 62/111 (55%), Positives = 80/111 (72%), Gaps = 3/111 (2%)

Query: 31  RMNKKGIAEFDNC---LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDH 87
           RM   G    DN         R   K + P LYRVLL+ND+YTPMEFVIH+L+ FF KD 
Sbjct: 7   RMQNNGERNGDNGNRGTSVITRTKPKTKKPNLYRVLLLNDDYTPMEFVIHILERFFQKDR 66

Query: 88  ETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           E+A  IML VH+ G+GECG++ YE+AE KV+QVM+++RQHQ+PLQC+ME+K
Sbjct: 67  ESATRIMLHVHNHGVGECGIFTYEVAETKVSQVMDFARQHQHPLQCVMEKK 117


>gi|299135164|ref|ZP_07028355.1| ATP-dependent Clp protease adaptor protein ClpS [Afipia sp. 1NLS2]
 gi|298590141|gb|EFI50345.1| ATP-dependent Clp protease adaptor protein ClpS [Afipia sp. 1NLS2]
          Length = 228

 Score =  173 bits (438), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 60/131 (45%), Positives = 81/131 (61%), Gaps = 4/131 (3%)

Query: 8   SMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVND 67
           +M  +  + G     + I   D                   +   + + P LYRVL++ND
Sbjct: 102 AMTQKTGQTGERRSTAPIMSKDDGRPDGTGP----GTSVITKTKPRTKRPSLYRVLILND 157

Query: 68  NYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQH 127
           +YTPMEFV+HVL+ FF KD E A  IML VHH GIGECG++ YEIAE KV QVM+++R+H
Sbjct: 158 DYTPMEFVVHVLERFFQKDVEAATKIMLHVHHHGIGECGIFTYEIAETKVTQVMDFARKH 217

Query: 128 QYPLQCIMEQK 138
           Q+PLQC+ME+K
Sbjct: 218 QHPLQCVMEKK 228


>gi|188991659|ref|YP_001903669.1| hypothetical protein xccb100_2265 [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167733419|emb|CAP51620.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 169

 Score =  173 bits (438), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 55/109 (50%), Positives = 71/109 (65%), Gaps = 1/109 (0%)

Query: 29  DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
           + RM +K   E D+ L  E     +V  P  Y+VLL+ND+YTPM+FV+ VLQ FF  D E
Sbjct: 61  NGRMPRKTSHEHDHGLVVET-SKPEVAPPPRYQVLLLNDDYTPMDFVVTVLQQFFNLDLE 119

Query: 89  TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            A  +ML VH +G G CGVY+ E+AE KV QV  +SR +Q+PL C MEQ
Sbjct: 120 RATQVMLHVHTRGRGVCGVYSREVAESKVAQVNEFSRMNQHPLLCTMEQ 168


>gi|126031981|gb|ABN71557.1| putative ATP-dependent Clp protease adaptor protein ClpS
           [uncultured bacterium]
          Length = 131

 Score =  173 bits (438), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 49/123 (39%), Positives = 78/123 (63%), Gaps = 3/123 (2%)

Query: 18  ILALMSFIFMADS---RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEF 74
             A   F+  ++      ++ G     + +    +  +K + P  ++VL++ND+YTPMEF
Sbjct: 8   APAFAPFVRASERAAGDDDESGRPGDQDQVGVATKTRTKPKKPSQFKVLMLNDDYTPMEF 67

Query: 75  VIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCI 134
           V+  L+ FF  D E A  +ML VH +G+G CG++ YEIAE KVNQVM+++RQ+Q+PLQC 
Sbjct: 68  VVMCLKRFFSMDLEQATRVMLHVHQRGVGVCGIFPYEIAETKVNQVMDFARQNQHPLQCT 127

Query: 135 MEQ 137
           +E+
Sbjct: 128 LEK 130


>gi|83951021|ref|ZP_00959754.1| ATP-dependent Clp protease, adaptor protein ClpS [Roseovarius
           nubinhibens ISM]
 gi|83838920|gb|EAP78216.1| ATP-dependent Clp protease, adaptor protein ClpS [Roseovarius
           nubinhibens ISM]
          Length = 114

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 54/108 (50%), Positives = 75/108 (69%)

Query: 31  RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
           ++N  G  + D  +   V    K + P LY+VLL+ND+YTPMEFV+HVL+ FF   H  A
Sbjct: 7   QLNSSGQDDGDGHISVAVATRPKTKRPPLYKVLLLNDDYTPMEFVVHVLERFFGMTHAEA 66

Query: 91  KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
             IML VH +G+   GV+++EIAE KV QVM+++RQHQ+PLQC ME++
Sbjct: 67  FEIMLTVHKKGVAVVGVFSHEIAETKVAQVMDFARQHQHPLQCTMEKE 114


>gi|67460154|sp|Q5FTB0|CLPS_GLUOX RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|58001492|gb|AAW60386.1| Hypothetical protein GOX0608 [Gluconobacter oxydans 621H]
          Length = 119

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/105 (49%), Positives = 75/105 (71%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
              G  + D  +   VR  ++ R P +Y+VL++ND+YTPMEFV+HVL+ FF K  + A  
Sbjct: 14  PGNGDGDQDLDIGVVVRPRTRTRKPSMYKVLMLNDDYTPMEFVVHVLERFFAKTRDEATS 73

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           IML+VH +G+G CGV+ YE+AE KV QVM+ +RQ+Q+PLQC +E+
Sbjct: 74  IMLQVHQRGVGICGVFTYEVAESKVTQVMDLARQNQHPLQCTIEK 118


>gi|304321615|ref|YP_003855258.1| ATP-dependent Clp protease adaptor protein ClpS [Parvularcula
           bermudensis HTCC2503]
 gi|303300517|gb|ADM10116.1| ATP-dependent Clp protease adaptor protein ClpS [Parvularcula
           bermudensis HTCC2503]
          Length = 146

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/113 (44%), Positives = 76/113 (67%)

Query: 26  FMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK 85
            M    M++ G  +    + + V+   K + P LY+VLL+ND+YTP EFV+ +L+  F+K
Sbjct: 34  PMRSINMSEDGDEKPGGNVATIVKEKPKAKRPSLYKVLLLNDDYTPQEFVVWLLEAVFHK 93

Query: 86  DHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            H+ A  IML VH+ G+G CGVY YE+AE KV QV+  +R++++PLQC ME++
Sbjct: 94  GHDEALRIMLHVHNHGVGICGVYTYEVAETKVAQVLELARRNEHPLQCTMERE 146


>gi|295690174|ref|YP_003593867.1| ATP-dependent Clp protease adaptor protein ClpS [Caulobacter segnis
           ATCC 21756]
 gi|295432077|gb|ADG11249.1| ATP-dependent Clp protease adaptor protein ClpS [Caulobacter segnis
           ATCC 21756]
          Length = 109

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 54/111 (48%), Positives = 71/111 (63%), Gaps = 3/111 (2%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           MA+ +    G                K + P LYRVL++ND+YTPMEFV++VL+ FF K 
Sbjct: 1   MAERKQ---GGQSNGAGSSVVTEVKPKTQKPSLYRVLILNDDYTPMEFVVYVLERFFNKS 57

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            E A  IML VH  G+G CGVY YE+AE KV QV++ +R+HQ+PLQC ME+
Sbjct: 58  REDATRIMLHVHQNGVGVCGVYTYEVAETKVAQVIDSARRHQHPLQCTMEK 108


>gi|260566297|ref|ZP_05836767.1| ATP-dependent Clp protease adapter protein clpS [Brucella suis bv.
           4 str. 40]
 gi|261214163|ref|ZP_05928444.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
           bv. 3 str. Tulya]
 gi|261222336|ref|ZP_05936617.1| ATP-dependent Clp protease adapter protein clpS [Brucella ceti
           B1/94]
 gi|261314110|ref|ZP_05953307.1| ATP-dependent Clp protease adapter protein clpS [Brucella
           pinnipedialis M163/99/10]
 gi|261317803|ref|ZP_05957000.1| ATP-dependent Clp protease adapter protein clpS [Brucella
           pinnipedialis B2/94]
 gi|261755135|ref|ZP_05998844.1| ATP-dependent Clp protease adapter protein clpS [Brucella suis bv.
           3 str. 686]
 gi|261758359|ref|ZP_06002068.1| ATP-dependent Clp protease adapter protein clpS [Brucella sp.
           F5/99]
 gi|265988834|ref|ZP_06101391.1| ATP-dependent Clp protease adapter protein clpS [Brucella
           pinnipedialis M292/94/1]
 gi|265991249|ref|ZP_06103806.1| ATP-dependent Clp protease adapter protein clpS [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265995085|ref|ZP_06107642.1| ATP-dependent Clp protease adapter protein clpS [Brucella
           melitensis bv. 3 str. Ether]
 gi|265999441|ref|ZP_05466371.2| ATP-dependent Clp protease adapter protein clpS [Brucella
           melitensis bv. 2 str. 63/9]
 gi|294852509|ref|ZP_06793182.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp. NVSL
           07-0026]
 gi|260155815|gb|EEW90895.1| ATP-dependent Clp protease adapter protein clpS [Brucella suis bv.
           4 str. 40]
 gi|260915770|gb|EEX82631.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
           bv. 3 str. Tulya]
 gi|260920920|gb|EEX87573.1| ATP-dependent Clp protease adapter protein clpS [Brucella ceti
           B1/94]
 gi|261297026|gb|EEY00523.1| ATP-dependent Clp protease adapter protein clpS [Brucella
           pinnipedialis B2/94]
 gi|261303136|gb|EEY06633.1| ATP-dependent Clp protease adapter protein clpS [Brucella
           pinnipedialis M163/99/10]
 gi|261738343|gb|EEY26339.1| ATP-dependent Clp protease adapter protein clpS [Brucella sp.
           F5/99]
 gi|261744888|gb|EEY32814.1| ATP-dependent Clp protease adapter protein clpS [Brucella suis bv.
           3 str. 686]
 gi|262766198|gb|EEZ11987.1| ATP-dependent Clp protease adapter protein clpS [Brucella
           melitensis bv. 3 str. Ether]
 gi|263002033|gb|EEZ14608.1| ATP-dependent Clp protease adapter protein clpS [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263093970|gb|EEZ17904.1| ATP-dependent Clp protease adapter protein clpS [Brucella
           melitensis bv. 2 str. 63/9]
 gi|264661031|gb|EEZ31292.1| ATP-dependent Clp protease adapter protein clpS [Brucella
           pinnipedialis M292/94/1]
 gi|294821098|gb|EFG38097.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp. NVSL
           07-0026]
          Length = 109

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 58/106 (54%), Positives = 77/106 (72%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
              G    ++      R   K R P LYRVLL+ND+YTPMEFV+HVLQ FF K+ + A  
Sbjct: 4   KTNGGNGPESGTVVVTRTQPKTRKPSLYRVLLLNDDYTPMEFVVHVLQRFFQKNLDDATR 63

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IML VH+ G+GECGV+ YE+AE KV+QVM+++RQ+Q+PLQC+ME+K
Sbjct: 64  IMLHVHNHGVGECGVFTYEVAETKVSQVMDFARQNQHPLQCVMEKK 109


>gi|209884899|ref|YP_002288756.1| ATP-dependent Clp protease adaptor protein ClpS [Oligotropha
           carboxidovorans OM5]
 gi|209873095|gb|ACI92891.1| ATP-dependent Clp protease adaptor protein ClpS [Oligotropha
           carboxidovorans OM5]
          Length = 179

 Score =  172 bits (436), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 60/123 (48%), Positives = 83/123 (67%), Gaps = 2/123 (1%)

Query: 16  DGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFV 75
           + +    + + M+ +     G +     +    R   + + P LYRVL++ND+YTPMEFV
Sbjct: 59  ESVRRAAATVRMSKNDDRPDGTSGPGTSV--ITRTKPRAKRPSLYRVLILNDDYTPMEFV 116

Query: 76  IHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIM 135
           +HVL+ FF KD E A  IML VHH GIGECGV+ YEIAE KV QVM+++R+HQ+PLQC+M
Sbjct: 117 VHVLEKFFQKDVEAATKIMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVM 176

Query: 136 EQK 138
           E+K
Sbjct: 177 EKK 179


>gi|153009350|ref|YP_001370565.1| ATP-dependent Clp protease adaptor protein ClpS [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561238|gb|ABS14736.1| ATP-dependent Clp protease adaptor protein ClpS [Ochrobactrum
           anthropi ATCC 49188]
          Length = 124

 Score =  172 bits (436), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 58/108 (53%), Positives = 78/108 (72%)

Query: 31  RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
           +    G    +N      R   K + P LYRVLL+ND+YTPMEFV+HVLQ FF K+ + A
Sbjct: 17  QSKTDGGNGPENGTVLVTRTQPKTKKPSLYRVLLLNDDYTPMEFVVHVLQRFFQKNQDDA 76

Query: 91  KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
             IML VH+ G+GECGV+ YE+AE KV+QVM+++RQ+Q+PLQC+ME+K
Sbjct: 77  TRIMLHVHNHGVGECGVFTYEVAETKVSQVMDFARQNQHPLQCVMEKK 124


>gi|86357527|ref|YP_469419.1| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium etli CFN
           42]
 gi|218460323|ref|ZP_03500414.1| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium etli Kim
           5]
 gi|86281629|gb|ABC90692.1| ATP-dependent Clp protease adaptor protein [Rhizobium etli CFN 42]
          Length = 117

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 59/118 (50%), Positives = 83/118 (70%), Gaps = 2/118 (1%)

Query: 21  LMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQ 80
           +   I M +   +++     +       R   K + P LYRVLL+ND+YTPMEFVIH+L+
Sbjct: 2   IAKPIRMQND--SERNGDNGNRGTSVITRTKPKTKKPNLYRVLLLNDDYTPMEFVIHILE 59

Query: 81  NFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            FF KD E+A  IML VH+ G+GECG++ YE+AE KV+QVM+++RQHQ+PLQC+ME+K
Sbjct: 60  RFFQKDRESATRIMLHVHNHGVGECGIFTYEVAETKVSQVMDFARQHQHPLQCVMEKK 117


>gi|161619121|ref|YP_001593008.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella canis
           ATCC 23365]
 gi|163843434|ref|YP_001627838.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella suis ATCC
           23445]
 gi|189024321|ref|YP_001935089.1| Protein of unknown function DUF174 [Brucella abortus S19]
 gi|254689393|ref|ZP_05152647.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus
           bv. 6 str. 870]
 gi|254693877|ref|ZP_05155705.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus
           bv. 3 str. Tulya]
 gi|254697528|ref|ZP_05159356.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254704457|ref|ZP_05166285.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella suis bv.
           3 str. 686]
 gi|254706649|ref|ZP_05168477.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella
           pinnipedialis M163/99/10]
 gi|254710244|ref|ZP_05172055.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella
           pinnipedialis B2/94]
 gi|254714240|ref|ZP_05176051.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella ceti
           M644/93/1]
 gi|254717676|ref|ZP_05179487.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella ceti
           M13/05/1]
 gi|254719232|ref|ZP_05181043.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp.
           83/13]
 gi|254730423|ref|ZP_05189001.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus
           bv. 4 str. 292]
 gi|256031738|ref|ZP_05445352.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella
           pinnipedialis M292/94/1]
 gi|256061251|ref|ZP_05451402.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella neotomae
           5K33]
 gi|256159904|ref|ZP_05457626.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella ceti
           M490/95/1]
 gi|256255138|ref|ZP_05460674.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella ceti
           B1/94]
 gi|256257639|ref|ZP_05463175.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus
           bv. 9 str. C68]
 gi|260168871|ref|ZP_05755682.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp.
           F5/99]
 gi|260546633|ref|ZP_05822372.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
           NCTC 8038]
 gi|260754911|ref|ZP_05867259.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
           bv. 6 str. 870]
 gi|260758128|ref|ZP_05870476.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
           bv. 4 str. 292]
 gi|260761954|ref|ZP_05874297.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260883923|ref|ZP_05895537.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
           bv. 9 str. C68]
 gi|261219517|ref|ZP_05933798.1| ATP-dependent Clp protease adapter protein clpS [Brucella ceti
           M13/05/1]
 gi|261322012|ref|ZP_05961209.1| ATP-dependent Clp protease adapter protein clpS [Brucella ceti
           M644/93/1]
 gi|261325259|ref|ZP_05964456.1| ATP-dependent Clp protease adapter protein clpS [Brucella neotomae
           5K33]
 gi|265984227|ref|ZP_06096962.1| ATP-dependent Clp protease adapter protein clpS [Brucella sp.
           83/13]
 gi|265998300|ref|ZP_06110857.1| ATP-dependent Clp protease adapter protein clpS [Brucella ceti
           M490/95/1]
 gi|306837981|ref|ZP_07470839.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp. NF
           2653]
 gi|306841893|ref|ZP_07474573.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp. BO2]
 gi|306844034|ref|ZP_07476629.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp. BO1]
 gi|37077259|sp|Q8G0C9|CLPS_BRUSU RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|189082472|sp|A9M5I2|CLPS_BRUC2 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|189082473|sp|B0CGW7|CLPS_BRUSI RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238689379|sp|B2S618|CLPS_BRUA1 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|161335932|gb|ABX62237.1| ATP-dependent Clp protease adaptor protein clpS [Brucella canis
           ATCC 23365]
 gi|163674157|gb|ABY38268.1| ATP-dependent Clp protease adaptor protein clpS [Brucella suis ATCC
           23445]
 gi|189019893|gb|ACD72615.1| Protein of unknown function DUF174 [Brucella abortus S19]
 gi|260095683|gb|EEW79560.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
           NCTC 8038]
 gi|260668446|gb|EEX55386.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
           bv. 4 str. 292]
 gi|260672386|gb|EEX59207.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260675019|gb|EEX61840.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
           bv. 6 str. 870]
 gi|260873451|gb|EEX80520.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
           bv. 9 str. C68]
 gi|260924606|gb|EEX91174.1| ATP-dependent Clp protease adapter protein clpS [Brucella ceti
           M13/05/1]
 gi|261294702|gb|EEX98198.1| ATP-dependent Clp protease adapter protein clpS [Brucella ceti
           M644/93/1]
 gi|261301239|gb|EEY04736.1| ATP-dependent Clp protease adapter protein clpS [Brucella neotomae
           5K33]
 gi|262552768|gb|EEZ08758.1| ATP-dependent Clp protease adapter protein clpS [Brucella ceti
           M490/95/1]
 gi|264662819|gb|EEZ33080.1| ATP-dependent Clp protease adapter protein clpS [Brucella sp.
           83/13]
 gi|306275789|gb|EFM57513.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp. BO1]
 gi|306288023|gb|EFM59425.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp. BO2]
 gi|306406905|gb|EFM63126.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp. NF
           2653]
          Length = 116

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 58/106 (54%), Positives = 77/106 (72%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
              G    ++      R   K R P LYRVLL+ND+YTPMEFV+HVLQ FF K+ + A  
Sbjct: 11  KTNGGNGPESGTVVVTRTQPKTRKPSLYRVLLLNDDYTPMEFVVHVLQRFFQKNLDDATR 70

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IML VH+ G+GECGV+ YE+AE KV+QVM+++RQ+Q+PLQC+ME+K
Sbjct: 71  IMLHVHNHGVGECGVFTYEVAETKVSQVMDFARQNQHPLQCVMEKK 116


>gi|225852667|ref|YP_002732900.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella
           melitensis ATCC 23457]
 gi|256044825|ref|ZP_05447729.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256113730|ref|ZP_05454534.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella
           melitensis bv. 3 str. Ether]
 gi|260565575|ref|ZP_05836059.1| ATP-dependent Clp protease adapter protein clpS [Brucella
           melitensis bv. 1 str. 16M]
 gi|21542304|sp|Q8YHI3|CLPS_BRUME RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|254763811|sp|C0RJD8|CLPS_BRUMB RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|225641032|gb|ACO00946.1| ATP-dependent Clp protease adapter protein clpS [Brucella
           melitensis ATCC 23457]
 gi|260151643|gb|EEW86737.1| ATP-dependent Clp protease adapter protein clpS [Brucella
           melitensis bv. 1 str. 16M]
 gi|326409188|gb|ADZ66253.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella
           melitensis M28]
          Length = 116

 Score =  171 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 58/106 (54%), Positives = 77/106 (72%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
              G    ++      R   K R P LYRVLL+ND+YTPMEFV+HVLQ FF K+ + A  
Sbjct: 11  KTNGGNGPESGTVVVTRTQPKTRKPSLYRVLLLNDDYTPMEFVVHVLQRFFQKNLDDATR 70

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IML VH+ G+GECGV+ YE+AE KV+QVM+++RQ+Q+PLQC+ME+K
Sbjct: 71  IMLHVHNHGVGECGVFTYEVAETKVSQVMDFARQNQHPLQCVMEKK 116


>gi|90419585|ref|ZP_01227495.1| ATP-dependent Clp protease adaptor protein [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336522|gb|EAS50263.1| ATP-dependent Clp protease adaptor protein [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 122

 Score =  171 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/108 (56%), Positives = 77/108 (71%)

Query: 30  SRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
           S+  K      D   +   R   K + P LYRVLL+ND+YTPMEFVIHVL+ FF KD E 
Sbjct: 14  SQAGKDDDQVPDRGTEVITRTKPKTQKPSLYRVLLLNDDYTPMEFVIHVLERFFQKDREA 73

Query: 90  AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           A  IML VH+ G+GECGV+ YE+AE KV QVM+++RQHQ+PLQC+ME+
Sbjct: 74  ATRIMLHVHNHGVGECGVFTYEVAETKVTQVMDFARQHQHPLQCVMEK 121


>gi|148261528|ref|YP_001235655.1| ATP-dependent Clp protease adaptor protein ClpS [Acidiphilium
           cryptum JF-5]
 gi|326405016|ref|YP_004285098.1| ATP-dependent Clp protease adaptor protein ClpS [Acidiphilium
           multivorum AIU301]
 gi|146403209|gb|ABQ31736.1| ATP-dependent Clp protease adaptor protein ClpS [Acidiphilium
           cryptum JF-5]
 gi|325051878|dbj|BAJ82216.1| ATP-dependent Clp protease adaptor protein ClpS [Acidiphilium
           multivorum AIU301]
          Length = 118

 Score =  171 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 53/109 (48%), Positives = 75/109 (68%), Gaps = 1/109 (0%)

Query: 30  SRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
           S  +++G            R  +K R P LY+VL++ND+YTPMEFV+HVL+ FF K  + 
Sbjct: 11  SGSDRRGTGN-GLGTGVATRTRTKTRKPSLYKVLMLNDDYTPMEFVVHVLERFFGKSRQE 69

Query: 90  AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           A+ IML VH +G+G CGV+ YE+AE KV QVM+ +RQ Q+PLQC +E++
Sbjct: 70  AERIMLHVHRRGVGVCGVFTYEVAETKVTQVMDLARQSQHPLQCTIEKE 118


>gi|296116796|ref|ZP_06835402.1| ATP-dependent Clp protease adaptor protein ClpS [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295976597|gb|EFG83369.1| ATP-dependent Clp protease adaptor protein ClpS [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 134

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 53/111 (47%), Positives = 75/111 (67%), Gaps = 1/111 (0%)

Query: 28  ADSRMNKKGIAEFDNCL-DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
              R +  G    D+ +    +R   + R P +Y+VL++ND+YTPMEFV+HVL+ FF K 
Sbjct: 23  PPRRPDGTGENGNDDGMAGVVIRTRPQTRKPAMYKVLMLNDDYTPMEFVVHVLERFFQKS 82

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            E A  IML VH +G+G CGV+ YE+AE KV QVM+ +RQ+Q+PLQC +E+
Sbjct: 83  REEATDIMLHVHKRGVGVCGVFTYEVAETKVTQVMDLARQNQHPLQCTIEK 133


>gi|87198523|ref|YP_495780.1| ATP-dependent Clp protease adaptor protein ClpS [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134204|gb|ABD24946.1| ATP-dependent Clp protease adaptor protein ClpS [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 126

 Score =  171 bits (433), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 50/123 (40%), Positives = 76/123 (61%), Gaps = 2/123 (1%)

Query: 15  RDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEF 74
           R  +  L      A     +      D  +    +  ++ + P  ++VL++ND+YTPMEF
Sbjct: 5   RLALPDLSVPQRCAGDEDTR--GPGGDEQIGIATKTRARPKKPSQFKVLMLNDDYTPMEF 62

Query: 75  VIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCI 134
           V+ VL+ FF  D E A  +ML VH +G+G CG++ YEIAE KVNQVM+++RQ+Q+PLQC 
Sbjct: 63  VVMVLKRFFNMDLEQATRVMLHVHQRGVGVCGIFPYEIAETKVNQVMDFARQNQHPLQCT 122

Query: 135 MEQ 137
           +E+
Sbjct: 123 LEK 125


>gi|90424816|ref|YP_533186.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris BisB18]
 gi|90106830|gb|ABD88867.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris BisB18]
          Length = 137

 Score =  171 bits (433), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 62/131 (47%), Positives = 81/131 (61%), Gaps = 4/131 (3%)

Query: 8   SMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVND 67
           S +HR      L       M +      G       +    +   K + P LYRVL++ND
Sbjct: 11  SPFHRSATQSRLRSAP--RMGNDEGRSSGPGNPATSV--ITKVKPKTKRPNLYRVLILND 66

Query: 68  NYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQH 127
           +YTPMEFV+HVL+ FF  D E A  +ML VHH GIGECGV+ YEIAE KV QVM+++R+H
Sbjct: 67  DYTPMEFVVHVLEKFFQMDVEAATQVMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKH 126

Query: 128 QYPLQCIMEQK 138
           Q+PLQC+ME+K
Sbjct: 127 QHPLQCVMEKK 137


>gi|114765842|ref|ZP_01444935.1| ATP-dependent Clp protease, adaptor protein ClpS [Pelagibaca
           bermudensis HTCC2601]
 gi|114541841|gb|EAU44878.1| ATP-dependent Clp protease, adaptor protein ClpS [Roseovarius sp.
           HTCC2601]
          Length = 120

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 51/101 (50%), Positives = 72/101 (71%)

Query: 38  AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
            + D   D  ++   K + P LY+VLL+ND+YTPMEFV+HVL+ FF   H  A  IML V
Sbjct: 20  GDGDGDADVVLQTKPKTKRPPLYKVLLLNDDYTPMEFVVHVLERFFGMSHAQAFEIMLTV 79

Query: 98  HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           H +G+   GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 80  HKKGVAVVGVFSHEIAETKVGQVMDFARRHQHPLQCTMEKE 120


>gi|209549170|ref|YP_002281087.1| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209534926|gb|ACI54861.1| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 116

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 62/118 (52%), Positives = 84/118 (71%), Gaps = 3/118 (2%)

Query: 21  LMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQ 80
           +   I M +   ++ G  E  N      R   K + P LYRVLL+ND+YTPMEFVIH+L+
Sbjct: 2   IAKPIRMQND-SDRNG--ENGNRTSVITRTKPKTKKPNLYRVLLLNDDYTPMEFVIHILE 58

Query: 81  NFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            FF KD E+A  IML VH+ G+GECG++ YE+AE KV+QVM+++RQHQ+PLQC+ME+K
Sbjct: 59  RFFQKDRESATRIMLHVHNHGVGECGIFTYEVAETKVSQVMDFARQHQHPLQCVMEKK 116


>gi|167647097|ref|YP_001684760.1| ATP-dependent Clp protease adaptor protein ClpS [Caulobacter sp.
           K31]
 gi|254763813|sp|B0T2L1|CLPS_CAUSK RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|167349527|gb|ABZ72262.1| ATP-dependent Clp protease adaptor protein ClpS [Caulobacter sp.
           K31]
          Length = 109

 Score =  170 bits (432), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 53/111 (47%), Positives = 71/111 (63%), Gaps = 3/111 (2%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           MA+ +    G                K + P LYRVL++ND+YTPMEFV++VL+ FF K 
Sbjct: 1   MAERKQ---GGQNNGAGSSVITEVKPKTQKPSLYRVLILNDDYTPMEFVVYVLERFFNKS 57

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            E A  IML VH  G+G CGV+ YE+AE KV QV++ +R+HQ+PLQC ME+
Sbjct: 58  REDATRIMLHVHQHGVGVCGVFTYEVAETKVAQVIDSARRHQHPLQCTMEK 108


>gi|260432448|ref|ZP_05786419.1| ATP-dependent Clp protease adaptor protein ClpS [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260416276|gb|EEX09535.1| ATP-dependent Clp protease adaptor protein ClpS [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 113

 Score =  170 bits (432), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 54/112 (48%), Positives = 76/112 (67%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           M  +R    G ++ D      V+   K + P LY+VLL+ND+YTPMEFV+HVL+ FF   
Sbjct: 1   MLTARWMMAGKSDDDGDTSILVQTKPKTKRPPLYKVLLLNDDYTPMEFVVHVLERFFGMS 60

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           H  A  IML VH +G+   GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 61  HAQAFEIMLTVHKKGVAVVGVFSHEIAETKVGQVMDFARRHQHPLQCTMERE 112


>gi|288957528|ref|YP_003447869.1| ATP-dependent Clp protease adaptor protein [Azospirillum sp. B510]
 gi|288909836|dbj|BAI71325.1| ATP-dependent Clp protease adaptor protein [Azospirillum sp. B510]
          Length = 108

 Score =  170 bits (432), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 54/111 (48%), Positives = 73/111 (65%), Gaps = 4/111 (3%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           MADS                 V+   K + P +Y+VL++ND+YTPMEFV+ VL+ FF K 
Sbjct: 1   MADSDKRGNDGTNSGVV----VKAKPKTKKPSMYKVLMLNDDYTPMEFVVLVLERFFSKS 56

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            E A  IML VH +G+G CGV+ YE+AE KV QVM+++RQHQ+PLQC +E+
Sbjct: 57  REEATQIMLHVHRRGVGLCGVFTYEVAETKVTQVMDFARQHQHPLQCTLEK 107


>gi|163760870|ref|ZP_02167949.1| ATP-dependent Clp protease adaptor protein ClpS [Hoeflea
           phototrophica DFL-43]
 gi|162281914|gb|EDQ32206.1| ATP-dependent Clp protease adaptor protein ClpS [Hoeflea
           phototrophica DFL-43]
          Length = 122

 Score =  170 bits (431), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 58/106 (54%), Positives = 75/106 (70%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
            K G    D       R   +V+ P LYRVLL+ND+YTPMEFVIHVL+ FF KD + A  
Sbjct: 17  KKTGDGGSDRGTSVITRTKPQVKKPSLYRVLLLNDDYTPMEFVIHVLERFFQKDRDQATR 76

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IML VH+ G+GECGV+ YE+AE KV QVM+++R + +PLQC+ME+K
Sbjct: 77  IMLHVHNHGVGECGVFTYEVAETKVTQVMDFARTNHHPLQCVMEKK 122


>gi|150396335|ref|YP_001326802.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
           medicae WSM419]
 gi|150027850|gb|ABR59967.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
           medicae WSM419]
          Length = 117

 Score =  170 bits (431), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 60/118 (50%), Positives = 78/118 (66%), Gaps = 2/118 (1%)

Query: 21  LMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQ 80
           +   + M        G       +    R   K + P LYRVLL+ND+YTPMEFVIH+L+
Sbjct: 2   IAMPVRMQQGSDGNGGGPNRGTSV--ITRTKPKTKKPSLYRVLLLNDDYTPMEFVIHILE 59

Query: 81  NFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            FF KD E A  IML VH+ G+GECGV+ YE+AE KV QVM+++RQHQ+PLQC+ME+K
Sbjct: 60  RFFQKDREEATTIMLHVHNHGVGECGVFTYEVAETKVTQVMDFARQHQHPLQCVMEKK 117


>gi|209964988|ref|YP_002297903.1| ATP-dependent Clp protease adaptor protein ClpS,putative
           [Rhodospirillum centenum SW]
 gi|259491250|sp|B6INJ3|CLPS_RHOCS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|209958454|gb|ACI99090.1| ATP-dependent Clp protease adaptor protein ClpS,putative
           [Rhodospirillum centenum SW]
          Length = 108

 Score =  169 bits (430), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 55/111 (49%), Positives = 77/111 (69%), Gaps = 4/111 (3%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           MADS  +     +        V+   K + P +Y+VL++ND+YTPMEFV+HVL+ FF K+
Sbjct: 1   MADSDKHG----DEGPSTGVVVKAKPKTKKPSMYKVLMLNDDYTPMEFVVHVLERFFNKN 56

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            E A  IML VH +G+G CGV+ YE+AE KV QVM+++RQHQ+PLQC +E+
Sbjct: 57  REEATRIMLHVHRRGVGVCGVFTYEVAETKVTQVMDFARQHQHPLQCTLEK 107


>gi|149186435|ref|ZP_01864748.1| hypothetical protein ED21_23138 [Erythrobacter sp. SD-21]
 gi|148830024|gb|EDL48462.1| hypothetical protein ED21_23138 [Erythrobacter sp. SD-21]
          Length = 121

 Score =  169 bits (430), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 50/105 (47%), Positives = 72/105 (68%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
                 E D  +    +  +K + P  Y+VLL+ND+YTPMEFV+ VL+ FF  D E A  
Sbjct: 16  GDDDRREGDGQVAIATKTRAKPKKPSQYKVLLLNDDYTPMEFVVIVLKRFFRMDMEEATR 75

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +ML VH +G+G CG++ YE+AE KVNQVM+++RQ+Q+PLQC +E+
Sbjct: 76  VMLHVHQKGVGVCGIFPYEVAETKVNQVMDFARQNQHPLQCTLEK 120


>gi|329851348|ref|ZP_08266105.1| ATP-dependent Clp protease adaptor protein ClpS family protein
           [Asticcacaulis biprosthecum C19]
 gi|328840194|gb|EGF89766.1| ATP-dependent Clp protease adaptor protein ClpS family protein
           [Asticcacaulis biprosthecum C19]
          Length = 161

 Score =  169 bits (429), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 52/105 (49%), Positives = 68/105 (64%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
                        + V    K + P LYRVL++ND+YTPMEFV++VL+ FF K  E A  
Sbjct: 56  KGTAGTRPAGSPLAVVETKPKPQKPSLYRVLILNDDYTPMEFVVYVLERFFNKSREDATR 115

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           IML VH  G+G CGVY YE+AE KV QV++ +R+HQ+PLQC ME+
Sbjct: 116 IMLHVHQTGVGVCGVYTYEVAETKVAQVVDMARRHQHPLQCTMEK 160


>gi|298291485|ref|YP_003693424.1| ATP-dependent Clp protease adaptor protein ClpS [Starkeya novella
           DSM 506]
 gi|296927996|gb|ADH88805.1| ATP-dependent Clp protease adaptor protein ClpS [Starkeya novella
           DSM 506]
          Length = 123

 Score =  169 bits (429), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 61/121 (50%), Positives = 83/121 (68%), Gaps = 2/121 (1%)

Query: 18  ILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIH 77
           + +      MAD    ++G       +    R   +V+ P LYRVLL+ND+YTPMEFV+H
Sbjct: 5   VTSQFREAMMADEERRRRGDNAPGTAV--ITRTKPQVKRPSLYRVLLLNDDYTPMEFVVH 62

Query: 78  VLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           VL++FF K+ E A  IML VH  G+GECGVY YE+AE KV QVM+++R+HQ+PLQC+ME+
Sbjct: 63  VLEHFFTKNREEATQIMLHVHQHGVGECGVYTYEVAETKVTQVMDFARKHQHPLQCVMEK 122

Query: 138 K 138
           K
Sbjct: 123 K 123


>gi|227821888|ref|YP_002825858.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
           fredii NGR234]
 gi|227340887|gb|ACP25105.1| ATP-dependent Clp protease adaptor protein ClpS 1 [Sinorhizobium
           fredii NGR234]
          Length = 117

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 61/120 (50%), Positives = 81/120 (67%), Gaps = 3/120 (2%)

Query: 19  LALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHV 78
           +  M       S  N  G +   + +    R   K + P LYRVLL+ND+YTPMEFV+H+
Sbjct: 1   MIAMPVRMQQGSEGNGGGPSRGTSVI---TRTKPKTKKPSLYRVLLLNDDYTPMEFVVHI 57

Query: 79  LQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           L+ FF KD E A  IML VH+ G+GECGV+ YE+AE KV QVM+++RQHQ+PLQC+ME+K
Sbjct: 58  LERFFQKDREQATVIMLHVHNHGVGECGVFTYEVAETKVTQVMDFARQHQHPLQCVMEKK 117


>gi|261752476|ref|ZP_05996185.1| ATP-dependent Clp protease adapter protein clpS [Brucella suis bv.
           5 str. 513]
 gi|261742229|gb|EEY30155.1| ATP-dependent Clp protease adapter protein clpS [Brucella suis bv.
           5 str. 513]
          Length = 109

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 57/106 (53%), Positives = 77/106 (72%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
              G    ++      R   K R P LYRVLL+ND+YTPMEFV+HVLQ FF K+ + A  
Sbjct: 4   KTNGGNGPESGTVVVTRTQPKTRKPSLYRVLLLNDDYTPMEFVVHVLQRFFQKNLDDATR 63

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IML VH+ G+GECG++ YE+AE KV+QVM+++RQ+Q+PLQC+ME+K
Sbjct: 64  IMLHVHNHGVGECGMFTYEVAETKVSQVMDFARQNQHPLQCVMEKK 109


>gi|15965239|ref|NP_385592.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
           meliloti 1021]
 gi|307309262|ref|ZP_07588930.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
           meliloti BL225C]
 gi|307317004|ref|ZP_07596445.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
           meliloti AK83]
 gi|21542320|sp|Q92Q63|CLPS1_RHIME RecName: Full=ATP-dependent Clp protease adapter protein ClpS 1
 gi|15074419|emb|CAC46065.1| Putative ATP-dependent Clp protease adapter protein clpS 1
           [Sinorhizobium meliloti 1021]
 gi|306897092|gb|EFN27837.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
           meliloti AK83]
 gi|306900263|gb|EFN30880.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
           meliloti BL225C]
          Length = 117

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 59/118 (50%), Positives = 78/118 (66%), Gaps = 2/118 (1%)

Query: 21  LMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQ 80
           +   + M        G       +    R   K + P LYRVLL+ND+YTPMEFVIH+L+
Sbjct: 2   IAMPVRMQQGSEGDGGGPSRGTSV--ITRTKPKTKKPSLYRVLLLNDDYTPMEFVIHILE 59

Query: 81  NFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            FF K+ E A  IML VH+ G+GECGV+ YE+AE KV QVM+++RQHQ+PLQC+ME+K
Sbjct: 60  RFFQKNREEATVIMLHVHNHGVGECGVFTYEVAETKVTQVMDFARQHQHPLQCVMEKK 117


>gi|260426993|ref|ZP_05780972.1| ATP-dependent Clp protease adapter protein ClpS [Citreicella sp.
           SE45]
 gi|260421485|gb|EEX14736.1| ATP-dependent Clp protease adapter protein ClpS [Citreicella sp.
           SE45]
          Length = 120

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 54/113 (47%), Positives = 74/113 (65%), Gaps = 1/113 (0%)

Query: 27  MADSRMNKKGIAEFDNC-LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK 85
           M     N     + D    D  V+   K + P LY+VLL+ND+YTPMEFV+HVL+ FF  
Sbjct: 8   MPIRLANTPSFDDGDGSDADVVVQTKPKTKRPPLYKVLLLNDDYTPMEFVVHVLERFFGM 67

Query: 86  DHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            H  A  IML VH +G+   GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 68  SHAQAFEIMLTVHKKGVAVVGVFSHEIAETKVGQVMDFARRHQHPLQCTMEKE 120


>gi|254701912|ref|ZP_05163740.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella suis bv.
           5 str. 513]
          Length = 116

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 57/106 (53%), Positives = 77/106 (72%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
              G    ++      R   K R P LYRVLL+ND+YTPMEFV+HVLQ FF K+ + A  
Sbjct: 11  KTNGGNGPESGTVVVTRTQPKTRKPSLYRVLLLNDDYTPMEFVVHVLQRFFQKNLDDATR 70

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IML VH+ G+GECG++ YE+AE KV+QVM+++RQ+Q+PLQC+ME+K
Sbjct: 71  IMLHVHNHGVGECGMFTYEVAETKVSQVMDFARQNQHPLQCVMEKK 116


>gi|218533142|ref|YP_002423958.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
           chloromethanicum CM4]
 gi|218525445|gb|ACK86030.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
           chloromethanicum CM4]
          Length = 131

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 57/128 (44%), Positives = 81/128 (63%), Gaps = 7/128 (5%)

Query: 11  HRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYT 70
               R  +    +    +    ++ G A          R   + + P LYRVLL+ND+YT
Sbjct: 11  QEAGRGRVPVRAASTPRSPGDDDRSGTA-------IITRTKPRAKRPSLYRVLLLNDDYT 63

Query: 71  PMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYP 130
           PMEFV+HV++ FF K H+ A  IM+ VHH G+GECGV+ YE+AE KV QVM+++R+HQ+P
Sbjct: 64  PMEFVVHVVERFFNKSHDDAYQIMMHVHHNGVGECGVFTYEVAETKVTQVMDFARKHQHP 123

Query: 131 LQCIMEQK 138
           LQC+ME+K
Sbjct: 124 LQCVMEKK 131


>gi|222085850|ref|YP_002544381.1| ATP-dependent Clp protease adaptor protein [Agrobacterium
           radiobacter K84]
 gi|221723298|gb|ACM26454.1| ATP-dependent Clp protease adaptor protein [Agrobacterium
           radiobacter K84]
          Length = 117

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 59/118 (50%), Positives = 84/118 (71%), Gaps = 2/118 (1%)

Query: 21  LMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQ 80
           +   I M   + +++     +       R  +K + P LYRVLL+ND+YTPMEFVIH+L+
Sbjct: 2   IAEPIRM--QKDSERNGDNGNRGTSVITRTKAKTKKPNLYRVLLLNDDYTPMEFVIHILE 59

Query: 81  NFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            FF KD E+A  IML VH+ G+GECG++ YE+AE KV+QVM+++RQHQ+PLQC+ME+K
Sbjct: 60  RFFQKDLESATRIMLHVHNHGVGECGIFTYEVAETKVSQVMDFARQHQHPLQCVMEKK 117


>gi|103485996|ref|YP_615557.1| ATP-dependent Clp protease adaptor protein ClpS [Sphingopyxis
           alaskensis RB2256]
 gi|98976073|gb|ABF52224.1| ATP-dependent Clp protease adaptor protein ClpS [Sphingopyxis
           alaskensis RB2256]
          Length = 121

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 56/111 (50%), Positives = 76/111 (68%), Gaps = 4/111 (3%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           MAD   +  G       +    R  +K + P +Y+VLL+ND+YTPMEFV+ VLQ FF  D
Sbjct: 14  MADKDDDATGTP----GVGIATRTRAKPKKPSMYKVLLLNDDYTPMEFVVMVLQRFFNMD 69

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            E A  +ML VH QG+G CGV++YE+AE KVNQVM+ +RQ+Q+PLQC +E+
Sbjct: 70  IERATQVMLHVHQQGVGVCGVFSYEVAETKVNQVMDAARQNQHPLQCTLEK 120


>gi|39936211|ref|NP_948487.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris CGA009]
 gi|39650066|emb|CAE28589.1| DUF174 [Rhodopseudomonas palustris CGA009]
          Length = 132

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 60/131 (45%), Positives = 83/131 (63%), Gaps = 3/131 (2%)

Query: 8   SMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVND 67
           S+ H         +   + MA     + G +     +    +   + + P LYRVL++ND
Sbjct: 5   SLSHSAAGQAGDRINRPLAMAGDG-GRSGPSTPSTSV--ITKTKPRTKRPNLYRVLILND 61

Query: 68  NYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQH 127
           +YTPMEFV+HVL+ FF  D E A  +ML VHH GIGECGV+ YEIAE KV QVM+++R+H
Sbjct: 62  DYTPMEFVVHVLEKFFQMDVEAATKVMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKH 121

Query: 128 QYPLQCIMEQK 138
           Q+PLQC+ME+K
Sbjct: 122 QHPLQCVMEKK 132


>gi|75675888|ref|YP_318309.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrobacter
           winogradskyi Nb-255]
 gi|74420758|gb|ABA04957.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrobacter
           winogradskyi Nb-255]
          Length = 136

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 60/113 (53%), Positives = 80/113 (70%), Gaps = 1/113 (0%)

Query: 26  FMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK 85
            M++   +  G    D       +  +K + P LYRVL++ND+YTPMEFV+HVL+ FF K
Sbjct: 25  RMSEDEDDHAG-GRGDPAASVITKVRTKTKRPNLYRVLILNDDYTPMEFVVHVLEKFFQK 83

Query: 86  DHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           D E A  IML VHH GIGECGV+ YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 84  DLEAATQIMLHVHHHGIGECGVFTYEVAETKVTQVMDFARKHQHPLQCVMEKK 136


>gi|163797886|ref|ZP_02191830.1| ATP-dependent Clp protease adaptor protein clpS [alpha
           proteobacterium BAL199]
 gi|159176848|gb|EDP61416.1| ATP-dependent Clp protease adaptor protein clpS [alpha
           proteobacterium BAL199]
          Length = 108

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/111 (46%), Positives = 74/111 (66%), Gaps = 4/111 (3%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           M+D      G           V+   K + P +Y+V+++ND+YTPMEFV+H+++ FF K 
Sbjct: 1   MSDDERGTGGRP----TTGVVVKTRPKTKKPSMYKVIMLNDDYTPMEFVVHIIERFFAKS 56

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            E A  IML VH +G+G CGVY YE+AE KV QVM+++RQHQ+PLQC +E+
Sbjct: 57  REEATQIMLHVHQRGVGICGVYTYEVAETKVTQVMDFARQHQHPLQCTLEK 107


>gi|116251968|ref|YP_767806.1| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115256616|emb|CAK07704.1| putative ATP-dependent CLP protease adaptor protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 109

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 60/109 (55%), Positives = 79/109 (72%), Gaps = 2/109 (1%)

Query: 32  MNKKGIAEFDNCLDSE--VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
           M        DN   +    R   K + P LYRVLL+ND+YTPMEFVIH+L+ FF KD E+
Sbjct: 1   MQNDSERNGDNANRTSVITRTKPKTKKPNLYRVLLLNDDYTPMEFVIHILERFFQKDRES 60

Query: 90  AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           A  IML VH+ G+GECG++ YE+AE KV+QVM+++RQHQ+PLQC+ME+K
Sbjct: 61  ATRIMLHVHNHGVGECGIFTYEVAETKVSQVMDFARQHQHPLQCVMEKK 109


>gi|110633725|ref|YP_673933.1| ATP-dependent Clp protease adaptor protein ClpS [Mesorhizobium sp.
           BNC1]
 gi|110284709|gb|ABG62768.1| ATP-dependent Clp protease adaptor protein ClpS [Chelativorans sp.
           BNC1]
          Length = 133

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/106 (53%), Positives = 75/106 (70%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
                           R  +K + P LYRVLL+ND+YTPMEFV+HVL+ FF KD E A  
Sbjct: 28  GDDEGNSTGRGTAVITRTRTKTKKPSLYRVLLLNDDYTPMEFVVHVLERFFQKDREAATM 87

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IML VH+ G+GECG+Y +E+AE KV+QVM+++RQHQ+PLQC+ME+K
Sbjct: 88  IMLHVHNHGVGECGIYTFEVAETKVSQVMDFARQHQHPLQCVMEKK 133


>gi|154248457|ref|YP_001419415.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthobacter
           autotrophicus Py2]
 gi|154162542|gb|ABS69758.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthobacter
           autotrophicus Py2]
          Length = 124

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 58/123 (47%), Positives = 80/123 (65%), Gaps = 2/123 (1%)

Query: 16  DGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFV 75
             I    +          ++G       + S  R   + + P LYRVLL+ND+YTPMEFV
Sbjct: 4   ISISTFQAPALAGPDTPPRRGGDGPGTAVIS--RTKPQTKRPSLYRVLLLNDDYTPMEFV 61

Query: 76  IHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIM 135
           +HVL+ FF KD + A  IML VH+ G+GECGV+ YE+AE KV QVM+++R+HQ+PLQC+M
Sbjct: 62  VHVLERFFNKDRDQANTIMLHVHNHGVGECGVFTYEVAETKVTQVMDFARKHQHPLQCVM 121

Query: 136 EQK 138
           E+K
Sbjct: 122 EKK 124


>gi|241204496|ref|YP_002975592.1| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240858386|gb|ACS56053.1| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 118

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 61/110 (55%), Positives = 80/110 (72%), Gaps = 2/110 (1%)

Query: 31  RMNKKGIAEFDNCLDSE--VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
           RM        DN   +    R   K + P LYRVLL+ND+YTPMEFVIH+L+ FF KD E
Sbjct: 9   RMQNDSERNGDNANRTSVITRTKPKTKKPNLYRVLLLNDDYTPMEFVIHILERFFQKDRE 68

Query: 89  TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           +A  IML VH+ G+GECG++ YE+AE KV+QVM+++RQHQ+PLQC+ME+K
Sbjct: 69  SATRIMLHVHNHGVGECGIFTYEVAETKVSQVMDFARQHQHPLQCVMEKK 118


>gi|315498280|ref|YP_004087084.1| ATP-dependent clp protease adaptor protein clps [Asticcacaulis
           excentricus CB 48]
 gi|315416292|gb|ADU12933.1| ATP-dependent Clp protease adaptor protein ClpS [Asticcacaulis
           excentricus CB 48]
          Length = 132

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 55/122 (45%), Positives = 77/122 (63%), Gaps = 3/122 (2%)

Query: 19  LALMSFIFMADSRMNKKGIAEFDNCLDS---EVRFSSKVRVPKLYRVLLVNDNYTPMEFV 75
             L +   +  +R  K  + + D   ++    +    K   P LYRVL++ND+YTPMEFV
Sbjct: 10  PPLSAVSPVEAARAPKAPVTDVDKPANAPFAVIDAKPKAAKPSLYRVLILNDDYTPMEFV 69

Query: 76  IHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIM 135
           ++VL+ FF K  E A  IML VH  G+G CGVY YE+AE KV QV++ +R+HQ+PLQC M
Sbjct: 70  VYVLERFFNKSREDATRIMLHVHQTGVGVCGVYTYEVAETKVAQVVDMARRHQHPLQCTM 129

Query: 136 EQ 137
           E+
Sbjct: 130 EK 131


>gi|158423218|ref|YP_001524510.1| ATP-dependent Clp protease adaptor protein [Azorhizobium
           caulinodans ORS 571]
 gi|158330107|dbj|BAF87592.1| ATP-dependent Clp protease adaptor protein [Azorhizobium
           caulinodans ORS 571]
          Length = 131

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 59/111 (53%), Positives = 78/111 (70%), Gaps = 2/111 (1%)

Query: 28  ADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDH 87
            D    ++G       +    R   +V+ P LYRVLL+ND+YTPM+FV+HVL+ FF K  
Sbjct: 23  GDDDKQRRGPGGPGTAV--ITRTKPQVKRPNLYRVLLLNDDYTPMDFVVHVLERFFSKSR 80

Query: 88  ETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           E A  IML VHH G+GECGVY YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 81  EEANTIMLHVHHHGVGECGVYTYEVAETKVTQVMDFARKHQHPLQCVMEKK 131


>gi|27380265|ref|NP_771794.1| ATP-dependent Clp protease adaptor protein ClpS [Bradyrhizobium
           japonicum USDA 110]
 gi|27353429|dbj|BAC50419.1| yljA [Bradyrhizobium japonicum USDA 110]
          Length = 130

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 62/113 (54%), Positives = 80/113 (70%), Gaps = 2/113 (1%)

Query: 26  FMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK 85
            M++   N+ G     N      +   K + P LYRVL++ND+YTPMEFV+HVL+ FF K
Sbjct: 20  RMSNDE-NRSGSPTGPNT-SVITKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLEKFFQK 77

Query: 86  DHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           D E A  IML VHH GIGECGV+ YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 78  DVEAATKIMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK 130


>gi|254294360|ref|YP_003060383.1| ATP-dependent Clp protease adaptor protein ClpS [Hirschia baltica
           ATCC 49814]
 gi|254042891|gb|ACT59686.1| ATP-dependent Clp protease adaptor protein ClpS [Hirschia baltica
           ATCC 49814]
          Length = 109

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 48/108 (44%), Positives = 72/108 (66%)

Query: 31  RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
             +       D+      R  +K + P LYRVL++ND++TPMEFV+ +L++FF K  E A
Sbjct: 1   MSDDNTPTGPDDETGVATRTETKTKRPSLYRVLILNDDFTPMEFVVLILEHFFNKTREEA 60

Query: 91  KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
             +ML VH+ G+G CGV+ YE+AE KV QVM+ +R+ ++PLQC ME++
Sbjct: 61  TKVMLHVHNTGVGVCGVFTYEVAETKVAQVMDLARRSEHPLQCTMERE 108


>gi|146341455|ref|YP_001206503.1| ATP-dependent Clp protease adaptor protein ClpS, modulator of ClpA
           substrate specificity [Bradyrhizobium sp. ORS278]
 gi|146194261|emb|CAL78283.1| ATP-dependent Clp protease adaptor protein ClpS, modulator of ClpA
           substrate specificity [Bradyrhizobium sp. ORS278]
          Length = 110

 Score =  168 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 59/110 (53%), Positives = 76/110 (69%), Gaps = 4/110 (3%)

Query: 29  DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
           D++    G            +   K + P LYRVL++ND+YTPMEFV+ VL+ FF KD E
Sbjct: 5   DNKSGGPGGP----ATSVITKVKPKTKRPNLYRVLILNDDYTPMEFVVLVLEKFFNKDVE 60

Query: 89  TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            A  IML VHH GIGECGV+ YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 61  AATKIMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK 110


>gi|88703373|ref|ZP_01101089.1| ATP-dependent Clp protease adaptor protein ClpS [Congregibacter
           litoralis KT71]
 gi|88702087|gb|EAQ99190.1| ATP-dependent Clp protease adaptor protein ClpS [Congregibacter
           litoralis KT71]
          Length = 169

 Score =  168 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 51/130 (39%), Positives = 71/130 (54%), Gaps = 12/130 (9%)

Query: 7   GSMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVN 66
           G+  HR +            M+  +  + G  +    L        KV+ P LY+V+L+N
Sbjct: 48  GANAHRAR---------PWLMSADKNEEHGGDDGGLALQ---EAKPKVKRPPLYKVVLLN 95

Query: 67  DNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQ 126
           D+YTPMEFV+ +L+ FF  + E A  IML VH  G G CG+Y  +IAE K  QV  Y+R 
Sbjct: 96  DDYTPMEFVVEILEVFFKMNREQATQIMLTVHTHGKGVCGIYTKDIAETKSAQVNQYARD 155

Query: 127 HQYPLQCIME 136
           HQ+PL C +E
Sbjct: 156 HQHPLLCEIE 165


>gi|316933620|ref|YP_004108602.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris DX-1]
 gi|315601334|gb|ADU43869.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris DX-1]
          Length = 132

 Score =  168 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 60/131 (45%), Positives = 81/131 (61%), Gaps = 3/131 (2%)

Query: 8   SMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVND 67
           S+ H             + MA     + G       +    +   + + P LYRVL++ND
Sbjct: 5   SLSHLAAGTAGDPTTRPMAMAGEG-GRSGPNTPSTSV--ITKTKPRTKRPSLYRVLILND 61

Query: 68  NYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQH 127
           +YTPMEFV+HVL+ FF  D E A  +ML VHH GIGECGV+ YEIAE KV QVM+++R+H
Sbjct: 62  DYTPMEFVVHVLEKFFQMDVEAATQVMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKH 121

Query: 128 QYPLQCIMEQK 138
           Q+PLQC+ME+K
Sbjct: 122 QHPLQCVMEKK 132


>gi|85716350|ref|ZP_01047323.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrobacter sp.
           Nb-311A]
 gi|85696866|gb|EAQ34751.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrobacter sp.
           Nb-311A]
          Length = 110

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 59/109 (54%), Positives = 77/109 (70%)

Query: 30  SRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
           S  + +     D       +   K + P LYRVL++ND+YTPMEFV+HVL+ FF KD E 
Sbjct: 2   SEDDDRAGGRGDPAASVITKVRPKTKRPNLYRVLILNDDYTPMEFVVHVLEKFFQKDLEA 61

Query: 90  AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           A  IML VHH GIGECGV+ YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 62  ATQIMLHVHHHGIGECGVFTYEVAETKVTQVMDFARKHQHPLQCVMEKK 110


>gi|148256120|ref|YP_001240705.1| ATP-dependent Clp protease adaptor protein ClpS, modulator of ClpA
           substrate specificity [Bradyrhizobium sp. BTAi1]
 gi|146408293|gb|ABQ36799.1| ATP-dependent Clp protease adaptor protein ClpS, modulator of ClpA
           substrate specificity [Bradyrhizobium sp. BTAi1]
          Length = 110

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 60/112 (53%), Positives = 79/112 (70%), Gaps = 2/112 (1%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           M+++     G       +    +   K + P LYRVL++ND+YTPMEFV+HVL+ FF KD
Sbjct: 1   MSNNDNKSGGTGGPVTSV--ITKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLEKFFNKD 58

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            E A  IML VHH GIGECGV+ YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 59  VEAATKIMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK 110


>gi|302382575|ref|YP_003818398.1| ATP-dependent Clp protease adaptor protein ClpS [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193203|gb|ADL00775.1| ATP-dependent Clp protease adaptor protein ClpS [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 110

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 52/111 (46%), Positives = 71/111 (63%), Gaps = 2/111 (1%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           M   R  ++          +      K++ P LYRVL++ND+YTPMEFV++VL+ FF K 
Sbjct: 1   MPTRRPGEQNGG--GQGAATITETKPKLQKPSLYRVLILNDDYTPMEFVVYVLERFFQKS 58

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            E A  IML VH  G+G CGV+ YE+AE KV QV+  +R+HQ+PLQC ME+
Sbjct: 59  REDATRIMLHVHQHGVGVCGVFTYEVAETKVAQVVETARRHQHPLQCTMEK 109


>gi|188584527|ref|YP_001927972.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
           populi BJ001]
 gi|179348025|gb|ACB83437.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
           populi BJ001]
          Length = 131

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 58/128 (45%), Positives = 80/128 (62%), Gaps = 7/128 (5%)

Query: 11  HRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYT 70
               R  +    +         ++ G A          R   + + P LYRVLL+ND+YT
Sbjct: 11  QEAVRGRVPVRAASTPRNPGDDDRSGTA-------IITRTKPRAKRPSLYRVLLLNDDYT 63

Query: 71  PMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYP 130
           PMEFV+HV++ FF K HE A  IM+ VHH G+GECGV+ YE+AE KV QVM+++R+HQ+P
Sbjct: 64  PMEFVVHVVERFFNKSHEDAYQIMMHVHHNGVGECGVFTYEVAETKVTQVMDFARKHQHP 123

Query: 131 LQCIMEQK 138
           LQC+ME+K
Sbjct: 124 LQCVMEKK 131


>gi|220935008|ref|YP_002513907.1| ATP-dependent Clp protease adaptor protein ClpS [Thioalkalivibrio
           sp. HL-EbGR7]
 gi|219996318|gb|ACL72920.1| ATP-dependent Clp protease adaptor protein ClpS [Thioalkalivibrio
           sp. HL-EbGR7]
          Length = 106

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 53/106 (50%), Positives = 70/106 (66%), Gaps = 1/106 (0%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
           M ++     D  L  E     K++ P  Y+V+L+ND+YTPMEFV+ VL++FF  D E A 
Sbjct: 1   MGEERKDTPDRGLAVE-EARPKLKPPPQYQVVLLNDDYTPMEFVVEVLESFFGMDREKAT 59

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            IML VH +G G CG+Y  +IAE KV QV +Y+RQHQ+PL C MEQ
Sbjct: 60  RIMLHVHTRGKGVCGIYPRDIAETKVAQVNDYARQHQHPLLCAMEQ 105


>gi|197104769|ref|YP_002130146.1| hypothetical protein PHZ_c1303 [Phenylobacterium zucineum HLK1]
 gi|238690132|sp|B4R947|CLPS_PHEZH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|196478189|gb|ACG77717.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 109

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 53/111 (47%), Positives = 73/111 (65%), Gaps = 3/111 (2%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           M++ +    G       +    +   K + P +YRVLL+ND+YTPMEFV++VL+ FF K 
Sbjct: 1   MSERKEGDSGAGVRSAVI---TQTKPKTQKPAMYRVLLLNDDYTPMEFVVYVLEQFFNKS 57

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            E A  IML VH  G+G CGVY YE+AE KV QV++ +R+HQ+PLQC ME+
Sbjct: 58  REDATRIMLHVHQHGVGVCGVYTYEVAETKVAQVVDTARRHQHPLQCTMEK 108


>gi|113969987|ref|YP_733780.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella sp.
           MR-4]
 gi|114047222|ref|YP_737772.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella sp.
           MR-7]
 gi|117920199|ref|YP_869391.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella sp.
           ANA-3]
 gi|123130486|sp|Q0HJP4|CLPS_SHESM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|123131487|sp|Q0HVZ0|CLPS_SHESR RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|166214747|sp|A0KW16|CLPS_SHESA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|113884671|gb|ABI38723.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella sp.
           MR-4]
 gi|113888664|gb|ABI42715.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella sp.
           MR-7]
 gi|117612531|gb|ABK47985.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella sp.
           ANA-3]
          Length = 102

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 49/101 (48%), Positives = 69/101 (68%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           + +  N    E R  S++  P +Y+V+L ND+YTPM+FVI VLQ FF K+ + A  IML 
Sbjct: 1   MGKTGNIEHVEERVESELMPPSMYKVILNNDDYTPMDFVIEVLQIFFRKNEQEATDIMLT 60

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +HHQG G CG++ Y IAE KV QV  ++RQ+Q+PL C +E+
Sbjct: 61  IHHQGKGICGIFPYGIAETKVIQVNQFARQNQHPLLCSLEK 101


>gi|121998183|ref|YP_001002970.1| ATP-dependent Clp protease adaptor protein ClpS [Halorhodospira
           halophila SL1]
 gi|158514017|sp|A1WWV6|CLPS_HALHL RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|121589588|gb|ABM62168.1| ATP-dependent Clp protease adaptor protein ClpS [Halorhodospira
           halophila SL1]
          Length = 106

 Score =  166 bits (422), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 48/104 (46%), Positives = 69/104 (66%), Gaps = 1/104 (0%)

Query: 35  KGIAEFDNCLDSEVRF-SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
                 D+    EV      ++ P +Y+V+L+ND+YTPM+FV+ VLQ FF KD   A  I
Sbjct: 2   TDEPNQDDPQGPEVEAAKPSLKQPPMYKVVLLNDDYTPMDFVVEVLQRFFNKDRSQATQI 61

Query: 94  MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           ML VH +G G CGVY+ ++AE KV+QV +Y+R+H++PL C ME+
Sbjct: 62  MLHVHTRGKGVCGVYSRDVAETKVSQVNDYAREHEHPLLCTMEE 105


>gi|254514303|ref|ZP_05126364.1| Sua5/YciO/YrdC/YwlC [gamma proteobacterium NOR5-3]
 gi|219676546|gb|EED32911.1| Sua5/YciO/YrdC/YwlC [gamma proteobacterium NOR5-3]
          Length = 134

 Score =  166 bits (422), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 43/88 (48%), Positives = 60/88 (68%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
               +++ P LY+V+L+ND+YTPMEFV+ VL+ FF  + E A  +ML VH QG G CG+Y
Sbjct: 43  EAKPQLKRPPLYKVVLLNDDYTPMEFVVEVLEVFFKMNREQATQVMLTVHTQGKGVCGIY 102

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIME 136
             +IAE K  QV  ++R HQ+PL C +E
Sbjct: 103 TKDIAETKSAQVNQFARDHQHPLLCEIE 130


>gi|92117938|ref|YP_577667.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrobacter
           hamburgensis X14]
 gi|91800832|gb|ABE63207.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrobacter
           hamburgensis X14]
          Length = 124

 Score =  166 bits (422), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 61/118 (51%), Positives = 77/118 (65%), Gaps = 2/118 (1%)

Query: 21  LMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQ 80
                 M +      G    D       +   K + P LYRVL++ND+YTPMEFV+HVL+
Sbjct: 9   SAPAPRMGNDEDRTDG--RGDPAASVITKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLE 66

Query: 81  NFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            FF KD E A  IML VHH GIGECGV+ YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 67  KFFQKDVEAATEIMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK 124


>gi|288941931|ref|YP_003444171.1| ATP-dependent Clp protease adaptor protein ClpS [Allochromatium
           vinosum DSM 180]
 gi|288897303|gb|ADC63139.1| ATP-dependent Clp protease adaptor protein ClpS [Allochromatium
           vinosum DSM 180]
          Length = 107

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 50/106 (47%), Positives = 67/106 (63%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
           M      E      S      K+R P LY+VLL+ND+YTPMEFV+ VL+ FF  + E A 
Sbjct: 1   MTNPRSGEERESGLSVQEARPKLRRPPLYKVLLLNDDYTPMEFVVLVLEIFFGMNREKAT 60

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            +ML VH +G+G CGV+  +IAE KV QV +Y+R +Q+PL C ME+
Sbjct: 61  QVMLHVHTRGVGVCGVFTKDIAETKVAQVNDYARGNQHPLMCTMEE 106


>gi|254509526|ref|ZP_05121593.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacteraceae
           bacterium KLH11]
 gi|221533237|gb|EEE36225.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacteraceae
           bacterium KLH11]
          Length = 113

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 52/112 (46%), Positives = 75/112 (66%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           M + +       + D+     V+   K + P LY+VLL+ND+YTPMEFV+HVL+ FF   
Sbjct: 1   MRNDQWMMSDNPDEDDDTSILVQTRPKTQRPPLYKVLLLNDDYTPMEFVVHVLERFFGMT 60

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           H  A  IML VH +G+   GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 61  HAQAFEIMLTVHKKGVAVVGVFSHEIAETKVGQVMDFARRHQHPLQCTMERE 112


>gi|192360778|ref|YP_001983029.1| ATP-dependent Clp protease adaptor protein ClpS [Cellvibrio
           japonicus Ueda107]
 gi|190686943|gb|ACE84621.1| ATP-dependent Clp protease adaptor protein clpS [Cellvibrio
           japonicus Ueda107]
          Length = 125

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 45/106 (42%), Positives = 64/106 (60%), Gaps = 1/106 (0%)

Query: 31  RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
           + N     E D  L        K++ P +Y+V+L+ND+YTPM+FV+H+L+ FF    E A
Sbjct: 13  KDNDDSAGESDGGLAVVT-AKPKLKRPSMYKVVLLNDDYTPMDFVVHILETFFSMTREKA 71

Query: 91  KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
             +ML VH  G   CG+Y  +IAE K  QV  YSR++Q+PL C +E
Sbjct: 72  THVMLTVHVHGKAVCGIYTRDIAETKAAQVNQYSRENQHPLLCEIE 117


>gi|114799620|ref|YP_759751.1| ATP-dependent Clp protease, adaptor protein ClpS [Hyphomonas
           neptunium ATCC 15444]
 gi|123028220|sp|Q0C3E2|CLPS_HYPNA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|114739794|gb|ABI77919.1| ATP-dependent Clp protease, adaptor protein ClpS [Hyphomonas
           neptunium ATCC 15444]
          Length = 118

 Score =  166 bits (421), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 50/95 (52%), Positives = 69/95 (72%)

Query: 44  LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIG 103
            D       K + P LYRVLL+ND+YTPMEFV+ +L+ FF +  E A  IML VH +G+G
Sbjct: 23  FDLATETRIKTKKPSLYRVLLLNDDYTPMEFVVFILERFFNRSREQATRIMLHVHQKGVG 82

Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            CGVY YE+AE KV QV++ +R+H++PLQC+ME++
Sbjct: 83  LCGVYTYEVAETKVAQVLDLARRHEHPLQCVMEKE 117


>gi|260574204|ref|ZP_05842209.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacter sp.
           SW2]
 gi|259023670|gb|EEW26961.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacter sp.
           SW2]
          Length = 117

 Score =  166 bits (421), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 51/116 (43%), Positives = 78/116 (67%), Gaps = 2/116 (1%)

Query: 22  MSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQN 81
           +  + M+    +K G  E D    +  +  ++   P LY+VLL+ND+YTPMEFV+H+L+ 
Sbjct: 3   LRPLQMSGRMSDKPGGTEGDAS--TLTKTHTRTERPPLYKVLLLNDDYTPMEFVVHILER 60

Query: 82  FFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           FF  +H  A  IML VH +G+   GV+++E+AE KV QVM+++R+HQ+PLQC ME+
Sbjct: 61  FFGLNHAQAFEIMLTVHKKGLAVVGVFSFEVAETKVAQVMDFARRHQHPLQCTMEK 116


>gi|114704886|ref|ZP_01437794.1| ATP-dependent Clp protease adaptor protein ClpS [Fulvimarina pelagi
           HTCC2506]
 gi|114539671|gb|EAU42791.1| ATP-dependent Clp protease adaptor protein ClpS [Fulvimarina pelagi
           HTCC2506]
          Length = 135

 Score =  166 bits (421), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 58/120 (48%), Positives = 77/120 (64%), Gaps = 2/120 (1%)

Query: 18  ILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIH 77
                    +     +++        +    R   K++ P LYRVLL+ND+YTPMEFVIH
Sbjct: 17  APKSAPPFPLVMQGEDEEETRGPGTSV--ITRSKPKLQKPSLYRVLLLNDDYTPMEFVIH 74

Query: 78  VLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           VL+ FF KD E A  IML VH  G+GECGV+ YE+AE KV QVM+++RQHQ+PLQC+ME+
Sbjct: 75  VLERFFQKDREAATQIMLHVHRHGVGECGVFTYEVAETKVTQVMDFARQHQHPLQCVMEK 134


>gi|58582177|ref|YP_201193.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas oryzae
           pv. oryzae KACC10331]
 gi|58426771|gb|AAW75808.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 126

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 53/109 (48%), Positives = 70/109 (64%), Gaps = 1/109 (0%)

Query: 29  DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
           + RM +    E D+ L  E     +V  P  Y+VLL+ND+YTPM+FV+ VL+ FF  + E
Sbjct: 18  NGRMPRNTSHEHDHGLMVE-ASKPEVAPPPRYQVLLLNDDYTPMDFVVTVLEQFFNLNLE 76

Query: 89  TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            A  IML VH +G G CGVY+ E+AE KV QV  +SR +Q+PL C MEQ
Sbjct: 77  QATQIMLHVHTRGRGVCGVYSREVAESKVAQVNEFSRMNQHPLLCTMEQ 125


>gi|255320456|ref|ZP_05361637.1| substrate modulator for ClpAP, directs protease activity towards
           aggregated protein [Acinetobacter radioresistens SK82]
 gi|262378352|ref|ZP_06071509.1| substrate modulator for ClpAP [Acinetobacter radioresistens SH164]
 gi|255302428|gb|EET81664.1| substrate modulator for ClpAP, directs protease activity towards
           aggregated protein [Acinetobacter radioresistens SK82]
 gi|262299637|gb|EEY87549.1| substrate modulator for ClpAP [Acinetobacter radioresistens SH164]
          Length = 137

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 46/124 (37%), Positives = 72/124 (58%), Gaps = 3/124 (2%)

Query: 18  ILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSS---KVRVPKLYRVLLVNDNYTPMEF 74
           + A      + D  +N +     ++  D E+       +++ P LY V+L+ND+YTPM+F
Sbjct: 13  VKASFCQTGLVDWHLNPRLSDSQNDEADGEIAVKPAPPQLKKPPLYAVVLLNDDYTPMDF 72

Query: 75  VIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCI 134
           VI +LQ +F  + + A  +ML VH++G G  G+Y  +IAE K NQV NY+R   +PL C 
Sbjct: 73  VIEILQQYFALNLDQATQVMLTVHYEGKGVAGIYPRDIAETKANQVNNYARSQGHPLLCQ 132

Query: 135 MEQK 138
           +E K
Sbjct: 133 IEPK 136


>gi|91774864|ref|YP_544620.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacillus
           flagellatus KT]
 gi|91708851|gb|ABE48779.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacillus
           flagellatus KT]
          Length = 128

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 49/87 (56%), Positives = 70/87 (80%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
            + ++ P +Y+V+L+ND+YTPMEFV+ V+Q FF+K+ E A  IML+VH +G G CGVY +
Sbjct: 41  KANIKPPSMYKVILLNDDYTPMEFVVDVMQRFFHKNREQATQIMLQVHTEGAGVCGVYPH 100

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            IAE KVNQV++Y+R+HQ+PLQC ME+
Sbjct: 101 GIAETKVNQVISYAREHQHPLQCTMEE 127


>gi|217976934|ref|YP_002361081.1| ATP-dependent Clp protease adaptor protein ClpS [Methylocella
           silvestris BL2]
 gi|217502310|gb|ACK49719.1| ATP-dependent Clp protease adaptor protein ClpS [Methylocella
           silvestris BL2]
          Length = 169

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 55/91 (60%), Positives = 71/91 (78%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R  ++ R P +YRVLL+ND+YTPMEFV+ VL+ +F K  E A  IML VH  G+GECGV
Sbjct: 79  TRTKTQTRRPSMYRVLLLNDDYTPMEFVVAVLKKYFNKGPEEATRIMLHVHQHGVGECGV 138

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YE+AE KV QVM+Y+R+HQ+PLQCIME+K
Sbjct: 139 FTYEVAETKVTQVMDYARKHQHPLQCIMEKK 169


>gi|163744786|ref|ZP_02152146.1| ATP-dependent Clp protease, putative [Oceanibulbus indolifex
           HEL-45]
 gi|161381604|gb|EDQ06013.1| ATP-dependent Clp protease, putative [Oceanibulbus indolifex
           HEL-45]
          Length = 130

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 49/117 (41%), Positives = 76/117 (64%), Gaps = 1/117 (0%)

Query: 22  MSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQN 81
           ++        M   G  + D+  +   +   K + P LY+V+L+ND++TPMEFV+ VL+ 
Sbjct: 14  VADRPAPGWLMMANGPKDSDDT-ELLTKTRPKTKRPPLYKVMLLNDDFTPMEFVVLVLER 72

Query: 82  FFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           FF  +H  A  IML VH +G+   GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 73  FFGLNHAQAFEIMLTVHKKGLAVVGVFSHEIAETKVAQVMDFARRHQHPLQCTMEKE 129


>gi|325292723|ref|YP_004278587.1| ATP-dependent Clp protease adapter protein clpS 1 [Agrobacterium
           sp. H13-3]
 gi|325060576|gb|ADY64267.1| ATP-dependent Clp protease adapter protein clpS 1 [Agrobacterium
           sp. H13-3]
          Length = 117

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 58/91 (63%), Positives = 73/91 (80%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R   K + P LYRVLL+ND+YTPMEFVIH+L+ FF KD E A  IML VH  G+GECGV
Sbjct: 27  TRVKPKTKRPNLYRVLLLNDDYTPMEFVIHILERFFQKDREAATRIMLHVHQHGVGECGV 86

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YE+AE KV+QVM+++RQHQ+PLQC+ME+K
Sbjct: 87  FTYEVAETKVSQVMDFARQHQHPLQCVMEKK 117


>gi|127512494|ref|YP_001093691.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella loihica
           PV-4]
 gi|166214745|sp|A3QD84|CLPS_SHELP RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|126637789|gb|ABO23432.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella loihica
           PV-4]
          Length = 102

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 48/101 (47%), Positives = 69/101 (68%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           + +  N    E R  +++  P +Y+V+L ND+YTPM+FVI VLQ FF K+ + A  IML 
Sbjct: 1   MGKVGNIEHIEERAETELMPPSMYKVILNNDDYTPMDFVIEVLQLFFNKNEQEATDIMLA 60

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +HHQG G CGV+ + IAE KV QV  ++RQ+Q+PL C +E+
Sbjct: 61  IHHQGKGICGVFPFGIAETKVAQVNQFARQNQHPLLCSLEK 101


>gi|24374169|ref|NP_718212.1| hypothetical protein SO_2627 [Shewanella oneidensis MR-1]
 gi|37077213|sp|Q8EDW4|CLPS_SHEON RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|24348676|gb|AAN55656.1|AE015704_7 conserved hypothetical protein [Shewanella oneidensis MR-1]
          Length = 102

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 48/101 (47%), Positives = 69/101 (68%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           + +  N    E R  S++  P +Y+V+L ND+YTPM+FVI VLQ FF K+ + A  IML 
Sbjct: 1   MGKTGNIEHVEERVESELMPPSMYKVILNNDDYTPMDFVIEVLQIFFRKNEQEATDIMLT 60

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +HHQG G CG++ + IAE KV QV  ++RQ+Q+PL C +E+
Sbjct: 61  IHHQGKGICGIFPFGIAETKVIQVNQFARQNQHPLLCSLEK 101


>gi|77464259|ref|YP_353763.1| ATP-dependent Clp protease adaptor protein clpS [Rhodobacter
           sphaeroides 2.4.1]
 gi|126463101|ref|YP_001044215.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221640143|ref|YP_002526405.1| ATP-dependent Clp protease adapter protein clpS [Rhodobacter
           sphaeroides KD131]
 gi|77388677|gb|ABA79862.1| ATP-dependent Clp protease adaptor protein clpS [Rhodobacter
           sphaeroides 2.4.1]
 gi|126104765|gb|ABN77443.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221160924|gb|ACM01904.1| ATP-dependent Clp protease adapter protein clpS [Rhodobacter
           sphaeroides KD131]
          Length = 106

 Score =  165 bits (419), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 53/108 (49%), Positives = 76/108 (70%), Gaps = 2/108 (1%)

Query: 31  RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
             +K G    D  + ++ R  SK + P LY+VLL+ND+YTPMEFV+HVL+ FF   H  A
Sbjct: 1   MSDKTGGPGDDTSILTKTR--SKTQRPPLYKVLLLNDDYTPMEFVVHVLERFFGLSHAQA 58

Query: 91  KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
             IML VH +G+   GV+++E+AE KV QVM+++R+HQ+PLQC ME++
Sbjct: 59  FEIMLTVHKKGLAVVGVFSFEVAETKVAQVMDFARRHQHPLQCTMEKE 106


>gi|332187681|ref|ZP_08389416.1| ATP-dependent Clp protease adaptor ClpS family protein
           [Sphingomonas sp. S17]
 gi|332012247|gb|EGI54317.1| ATP-dependent Clp protease adaptor ClpS family protein
           [Sphingomonas sp. S17]
          Length = 118

 Score =  165 bits (419), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 46/100 (46%), Positives = 69/100 (69%)

Query: 38  AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
            +  N L    R  ++ + P  YRVL++ND+YTPMEFV+  LQ FF    + A  +ML V
Sbjct: 18  DDEGNGLGVATRTRARTKQPTPYRVLMLNDDYTPMEFVVLCLQRFFRMSMDDATRVMLHV 77

Query: 98  HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           H +G+G CGV++YE+AE KV QV++++R +Q+PLQC +E+
Sbjct: 78  HQRGVGVCGVFSYEVAETKVAQVIDFARANQHPLQCTLEK 117


>gi|120598597|ref|YP_963171.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella sp.
           W3-18-1]
 gi|146293324|ref|YP_001183748.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           putrefaciens CN-32]
 gi|166214746|sp|A4Y7L6|CLPS_SHEPC RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|166214748|sp|A1RIX2|CLPS_SHESW RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|120558690|gb|ABM24617.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella sp.
           W3-18-1]
 gi|145565014|gb|ABP75949.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           putrefaciens CN-32]
 gi|319426624|gb|ADV54698.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           putrefaciens 200]
          Length = 102

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/101 (47%), Positives = 69/101 (68%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           + +  N    E R  S++  P +Y+V+L ND+YTPM+FVI VLQ FF K+ + A  IML 
Sbjct: 1   MGKTGNIEHVEERVESELMPPSMYKVILNNDDYTPMDFVIEVLQVFFRKNEQEATDIMLT 60

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +HHQG G CG++ + IAE KV QV  ++RQ+Q+PL C +E+
Sbjct: 61  IHHQGKGICGIFPFGIAETKVIQVNQFARQNQHPLLCSLEK 101


>gi|126732062|ref|ZP_01747864.1| ATP-dependent Clp protease adaptor protein ClpS [Sagittula stellata
           E-37]
 gi|126707351|gb|EBA06415.1| ATP-dependent Clp protease adaptor protein ClpS [Sagittula stellata
           E-37]
          Length = 116

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 49/109 (44%), Positives = 70/109 (64%)

Query: 30  SRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
             M      +         +   K + P LY+VLL+ND+YTPMEFV+HVL+ FF   H  
Sbjct: 8   WTMAADEPDDGQGETGVVTKTKPKTKRPPLYKVLLLNDDYTPMEFVVHVLERFFGMTHAQ 67

Query: 90  AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           A  +ML VH +G+   GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 68  AFEVMLTVHKKGVAVVGVFSHEIAETKVGQVMDFARRHQHPLQCTMEKE 116


>gi|37077096|sp|Q89JW5|CLPS2_BRAJA RecName: Full=ATP-dependent Clp protease adapter protein ClpS 2
          Length = 110

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 61/109 (55%), Positives = 78/109 (71%), Gaps = 1/109 (0%)

Query: 30  SRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
           +  N+ G     N      +   K + P LYRVL++ND+YTPMEFV+HVL+ FF KD E 
Sbjct: 3   NDENRSGSPTGPNT-SVITKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLEKFFQKDVEA 61

Query: 90  AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           A  IML VHH GIGECGV+ YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 62  ATKIMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK 110


>gi|15888689|ref|NP_354370.1| ATP-dependent Clp protease adaptor protein ClpS [Agrobacterium
           tumefaciens str. C58]
 gi|24638402|sp|Q8UFN4|CLPS1_AGRT5 RecName: Full=ATP-dependent Clp protease adapter protein ClpS 1
 gi|15156427|gb|AAK87155.1| ATP-dependent Clp protease adaptor protein ClpS [Agrobacterium
           tumefaciens str. C58]
          Length = 117

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 58/91 (63%), Positives = 73/91 (80%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R   K + P LYRVLL+ND+YTPMEFVIH+L+ FF KD E A  IML VH  G+GECGV
Sbjct: 27  TRVKPKTKRPNLYRVLLLNDDYTPMEFVIHILERFFQKDREAATRIMLHVHQHGVGECGV 86

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YE+AE KV+QVM+++RQHQ+PLQC+ME+K
Sbjct: 87  FTYEVAETKVSQVMDFARQHQHPLQCVMEKK 117


>gi|114569835|ref|YP_756515.1| ATP-dependent Clp protease adaptor protein ClpS [Maricaulis maris
           MCS10]
 gi|122316182|sp|Q0AQ60|CLPS_MARMM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|114340297|gb|ABI65577.1| ATP-dependent Clp protease adaptor protein ClpS [Maricaulis maris
           MCS10]
          Length = 109

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 53/112 (47%), Positives = 70/112 (62%), Gaps = 3/112 (2%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           M + + +  G+ E         +     + P LYRVLL+ND+YTPMEFV+ VL   F K 
Sbjct: 1   MTERKHDDTGVEE---GTGLATKTRPATKKPSLYRVLLLNDDYTPMEFVVEVLARIFRKS 57

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            E A  IML VH  G+G CGVY YE+AE KV QVM+ +R+ Q+PLQC ME++
Sbjct: 58  PEDAARIMLHVHQNGVGMCGVYTYEVAETKVAQVMDAARRAQHPLQCTMEKE 109


>gi|149928085|ref|ZP_01916332.1| ATP-dependent Clp protease adaptor protein ClpS [Limnobacter sp.
           MED105]
 gi|149823171|gb|EDM82408.1| ATP-dependent Clp protease adaptor protein ClpS [Limnobacter sp.
           MED105]
          Length = 134

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 53/125 (42%), Positives = 74/125 (59%), Gaps = 5/125 (4%)

Query: 15  RDGILALMS--FIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPM 72
           + G+L          +D              L+S+     K ++P +Y+V+L+ND+YTPM
Sbjct: 12  KGGVLLSNPCCVPLRSDYNEVMSSQNNPSTVLESQT---QKAKLPPMYQVVLLNDDYTPM 68

Query: 73  EFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQ 132
           EFV+ VLQ FF K  E A  IMLKVH +G G CGVY  +IA  KV  V  +++QHQ+PLQ
Sbjct: 69  EFVVIVLQKFFGKGREQATQIMLKVHREGKGVCGVYPKDIASTKVEMVCGFAKQHQHPLQ 128

Query: 133 CIMEQ 137
           C+ME+
Sbjct: 129 CVMEE 133


>gi|146276596|ref|YP_001166755.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacter
           sphaeroides ATCC 17025]
 gi|166214741|sp|A4WPY6|CLPS_RHOS5 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|145554837|gb|ABP69450.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 113

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 53/109 (48%), Positives = 76/109 (69%), Gaps = 2/109 (1%)

Query: 30  SRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
              +K G    D  + ++ R  SK + P LY+VLL+ND+YTPMEFV+HVL+ FF   H  
Sbjct: 7   QMSDKTGGTGDDTSILTKTR--SKTQRPPLYKVLLLNDDYTPMEFVVHVLERFFGLSHAQ 64

Query: 90  AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           A  IML VH +G+   GV+++E+AE KV QVM+++R+HQ+PLQC ME++
Sbjct: 65  AFEIMLTVHKKGLAVVGVFSFEVAETKVAQVMDFARRHQHPLQCTMEKE 113


>gi|85374864|ref|YP_458926.1| hypothetical protein ELI_10185 [Erythrobacter litoralis HTCC2594]
 gi|84787947|gb|ABC64129.1| hypothetical protein ELI_10185 [Erythrobacter litoralis HTCC2594]
          Length = 127

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 47/95 (49%), Positives = 70/95 (73%)

Query: 43  CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
            +    +  +K + P  Y+VL++ND+YTPMEFV+ VL+ FF  D E A  +ML VH +G+
Sbjct: 32  DVGVATKTRAKPKKPSQYKVLMLNDDYTPMEFVVMVLKRFFKMDLEQATRVMLHVHQKGV 91

Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           G CG++ YE+AE KVNQVM+++RQ+Q+PLQC +E+
Sbjct: 92  GVCGIFPYEVAETKVNQVMDFARQNQHPLQCTLEK 126


>gi|325915388|ref|ZP_08177705.1| hypothetical protein XVE_1596 [Xanthomonas vesicatoria ATCC 35937]
 gi|325538435|gb|EGD10114.1| hypothetical protein XVE_1596 [Xanthomonas vesicatoria ATCC 35937]
          Length = 126

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/109 (50%), Positives = 71/109 (65%), Gaps = 1/109 (0%)

Query: 29  DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
           + RM +K   E D+ L  E     +V  P  Y+VLL+ND+YTPM+FV+ VLQ FF  D E
Sbjct: 18  NGRMPRKTSHEHDHGLTVE-ASKPEVAPPPRYQVLLLNDDYTPMDFVVTVLQQFFNLDLE 76

Query: 89  TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            A  +ML VH +G G CGVY+ E+AE KV QV  +SR +Q+PL C MEQ
Sbjct: 77  RATQVMLHVHTRGRGVCGVYSREVAESKVAQVNEFSRMNQHPLLCTMEQ 125


>gi|241762133|ref|ZP_04760216.1| ATP-dependent Clp protease adaptor protein ClpS [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|260753723|ref|YP_003226616.1| ATP-dependent Clp protease adaptor protein ClpS [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|283856536|ref|YP_163460.2| ATP-dependent Clp protease adaptor protein ClpS [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|67460185|sp|Q5NLR1|CLPS_ZYMMO RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|241373383|gb|EER62983.1| ATP-dependent Clp protease adaptor protein ClpS [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|258553086|gb|ACV76032.1| ATP-dependent Clp protease adaptor protein ClpS [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|283775543|gb|AAV90349.2| ATP-dependent Clp protease adaptor protein ClpS [Zymomonas mobilis
           subsp. mobilis ZM4]
          Length = 107

 Score =  164 bits (417), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 49/106 (46%), Positives = 75/106 (70%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
           M+     + D+ +    R + + + P+ Y+VL++ND+YTPMEFV+  LQ FF    E A 
Sbjct: 1   MSGDKDFDKDSDVTVITRTTPQTKKPQPYKVLMLNDDYTPMEFVVLCLQRFFRMGIEDAT 60

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            +ML+VH +G+G CGV+ YE+AE KVNQV++++RQHQ+PLQC +E+
Sbjct: 61  KVMLQVHQRGVGICGVFTYEVAETKVNQVVDFARQHQHPLQCTLEK 106


>gi|254283858|ref|ZP_04958826.1| ATP-dependent Clp protease adaptor protein ClpS [gamma
           proteobacterium NOR51-B]
 gi|219680061|gb|EED36410.1| ATP-dependent Clp protease adaptor protein ClpS [gamma
           proteobacterium NOR51-B]
          Length = 132

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 60/87 (68%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
             K++ P LYRV+L+ND+YTPMEFV+ VL+ FF  + + A  +ML VH QG G CG+Y  
Sbjct: 40  KPKLKRPPLYRVILLNDDYTPMEFVVEVLERFFSMNRDKATQVMLAVHTQGKGVCGIYPR 99

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +IAE K  QV   +++HQ+PL C +E 
Sbjct: 100 DIAETKAAQVNQCAKEHQHPLLCEVEP 126


>gi|83945502|ref|ZP_00957849.1| ATP-dependent Clp protease adaptor protein ClpS [Oceanicaulis
           alexandrii HTCC2633]
 gi|83851078|gb|EAP88936.1| ATP-dependent Clp protease adaptor protein ClpS [Oceanicaulis
           alexandrii HTCC2633]
          Length = 108

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 51/107 (47%), Positives = 71/107 (66%), Gaps = 1/107 (0%)

Query: 32  MNKKGIAE-FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
           M++    +  D      V+  ++ + P +Y+VLL+ND+YTPMEFVI VL   F+K  E A
Sbjct: 1   MSEPKKPDLPDQETGVTVKPRARTKRPSMYKVLLLNDDYTPMEFVIEVLVRIFHKGQEDA 60

Query: 91  KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             IML VH  G+G CGV+ YE+AE KV QVM+ +R+ Q+PLQC ME+
Sbjct: 61  TRIMLHVHQHGVGVCGVFTYEVAETKVAQVMDAARRAQHPLQCTMEK 107


>gi|262376116|ref|ZP_06069346.1| substrate modulator for ClpAP [Acinetobacter lwoffii SH145]
 gi|262308717|gb|EEY89850.1| substrate modulator for ClpAP [Acinetobacter lwoffii SH145]
          Length = 137

 Score =  164 bits (416), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 47/115 (40%), Positives = 70/115 (60%), Gaps = 3/115 (2%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFS---SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFF 83
           + D  ++ +   E     DS++       +++ P LY V+L+ND+YTPMEFVI +LQ +F
Sbjct: 22  IVDWHISPRLANEPSEDGDSDLAVQTAPPELKRPPLYAVVLLNDDYTPMEFVIEILQQYF 81

Query: 84  YKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
             + + A  +ML VH++G G  GVY  +IAE K NQV NY+R   +PL C +E K
Sbjct: 82  AMNLDQATQVMLTVHYEGKGVAGVYPRDIAETKANQVNNYARSQGHPLLCQIEPK 136


>gi|329298246|ref|ZP_08255582.1| ATP-dependent Clp protease adaptor protein ClpS [Plautia stali
           symbiont]
          Length = 106

 Score =  164 bits (416), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 50/107 (46%), Positives = 69/107 (64%), Gaps = 2/107 (1%)

Query: 31  RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
             N      F+   + +VR    ++ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A
Sbjct: 1   MANTNDWLNFERLAEDKVREG--LKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDVERA 58

Query: 91  KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             +MLKVH+ G   CGV+  E+AE KV QV NY+R++Q+PL C +E+
Sbjct: 59  TQLMLKVHYHGKAICGVFTAEVAETKVAQVNNYARENQHPLLCTLEK 105


>gi|297564863|ref|YP_003683835.1| ATP-dependent Clp protease adaptor protein ClpS [Meiothermus
           silvanus DSM 9946]
 gi|296849312|gb|ADH62327.1| ATP-dependent Clp protease adaptor protein ClpS [Meiothermus
           silvanus DSM 9946]
          Length = 100

 Score =  164 bits (416), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 50/94 (53%), Positives = 68/94 (72%)

Query: 45  DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
           D++ +  S+ R P  Y+VLL+ND+YTPM+FV+ VL  FF K    A  IML+VHH+G+G 
Sbjct: 7   DTKTKTQSRTRTPPQYKVLLLNDDYTPMDFVVEVLMRFFRKSELEATRIMLQVHHEGVGV 66

Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           CGVY +EIAE KV+QVM  + +  +PLQCIME +
Sbjct: 67  CGVYPFEIAETKVHQVMEAAAEEGHPLQCIMEPE 100


>gi|89069767|ref|ZP_01157103.1| ATP-dependent Clp protease adaptor protein clpS [Oceanicola
           granulosus HTCC2516]
 gi|89044713|gb|EAR50824.1| ATP-dependent Clp protease adaptor protein clpS [Oceanicola
           granulosus HTCC2516]
          Length = 113

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 50/113 (44%), Positives = 74/113 (65%)

Query: 26  FMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK 85
            +AD  M      +       +V    K + P LY+VL++ND+YTPMEFV+HVL+ FF  
Sbjct: 1   MLADHNMMADNDDDGGTDAGVKVETRPKTKRPPLYKVLILNDDYTPMEFVVHVLERFFGL 60

Query: 86  DHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            H  A  +ML VH +G+   GV+++EIAE KV QVM+++++HQ+PLQC ME++
Sbjct: 61  SHAQAFDLMLTVHKKGLAVVGVFSFEIAETKVAQVMDFAQRHQHPLQCTMEKE 113


>gi|317047538|ref|YP_004115186.1| ATP-dependent Clp protease adaptor protein ClpS [Pantoea sp. At-9b]
 gi|316949155|gb|ADU68630.1| ATP-dependent Clp protease adaptor protein ClpS [Pantoea sp. At-9b]
          Length = 131

 Score =  164 bits (415), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 50/112 (44%), Positives = 72/112 (64%), Gaps = 2/112 (1%)

Query: 26  FMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK 85
           F  +   N      F++  + +VR    ++ P +Y+V+L ND+YTPMEFVI VLQ FF  
Sbjct: 21  FRRNIMANTNDWLNFEHLAEDKVREG--LKPPSMYKVILNNDDYTPMEFVIDVLQKFFSY 78

Query: 86  DHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           D E A  +MLKVH+QG   CGV+  E+AE KV QV  Y+R++++PL C +E+
Sbjct: 79  DVERATQLMLKVHYQGKAICGVFTAEVAETKVAQVNIYARENEHPLLCTLEK 130


>gi|119503235|ref|ZP_01625319.1| substrate modulator for ClpAP, directs protease activity towards
           aggregated proteins [marine gamma proteobacterium
           HTCC2080]
 gi|119460881|gb|EAW41972.1| substrate modulator for ClpAP, directs protease activity towards
           aggregated proteins [marine gamma proteobacterium
           HTCC2080]
          Length = 116

 Score =  164 bits (415), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 47/112 (41%), Positives = 67/112 (59%), Gaps = 1/112 (0%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVR-FSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK 85
           M   +M     A+ D+  D  V     K++ P L++V+L+ND+YTPMEFV+ +L+++F  
Sbjct: 1   MYSWQMGPPDKADRDDEGDLAVAPAKPKLKRPPLFQVVLLNDDYTPMEFVVEILESYFRL 60

Query: 86  DHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             E A  IML VH +G G CGVY  +IAE K  QV  Y+R   +PL C +E 
Sbjct: 61  GREQATQIMLMVHTKGKGVCGVYPRDIAESKATQVNTYARDSGHPLLCEVEP 112


>gi|126174686|ref|YP_001050835.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
           OS155]
 gi|153000985|ref|YP_001366666.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
           OS185]
 gi|160875698|ref|YP_001555014.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
           OS195]
 gi|217973055|ref|YP_002357806.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
           OS223]
 gi|304409063|ref|ZP_07390684.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
           OS183]
 gi|307303066|ref|ZP_07582821.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
           BA175]
 gi|166214743|sp|A3D5F3|CLPS_SHEB5 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|166214744|sp|A6WP64|CLPS_SHEB8 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|189082478|sp|A9L4G4|CLPS_SHEB9 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|254763824|sp|B8E950|CLPS_SHEB2 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|125997891|gb|ABN61966.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
           OS155]
 gi|151365603|gb|ABS08603.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
           OS185]
 gi|160861220|gb|ABX49754.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
           OS195]
 gi|217498190|gb|ACK46383.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
           OS223]
 gi|304352884|gb|EFM17281.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
           OS183]
 gi|306913426|gb|EFN43848.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
           BA175]
 gi|315267887|gb|ADT94740.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
           OS678]
          Length = 102

 Score =  164 bits (415), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 49/101 (48%), Positives = 70/101 (69%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           +A+  N    E R  S++  P +Y+V+L ND+YTPM+FVI VLQ FF K+ + A  IML 
Sbjct: 1   MAKIGNIEHVEERVESELMPPSMYKVVLNNDDYTPMDFVIEVLQVFFRKNEQEATDIMLT 60

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +HHQG G CG++ + IAE KV QV  ++RQ+Q+PL C +E+
Sbjct: 61  IHHQGKGICGIFPFGIAETKVIQVNQFARQNQHPLLCSLEK 101


>gi|170727045|ref|YP_001761071.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella woodyi
           ATCC 51908]
 gi|238688675|sp|B1KIC5|CLPS_SHEWM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|169812392|gb|ACA86976.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella woodyi
           ATCC 51908]
          Length = 102

 Score =  164 bits (415), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 50/101 (49%), Positives = 68/101 (67%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           + +  N    E R  S+V  P +Y+V+L ND+YTPM+FVI VLQ FF K  E A  IML 
Sbjct: 1   MGKAGNIEHVEERVESEVMPPSMYKVILNNDDYTPMDFVIEVLQLFFKKTEEQATDIMLA 60

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +HHQG G CG++ + IAE KV QV  ++RQ+Q+PL C +E+
Sbjct: 61  IHHQGKGICGIFPFGIAETKVAQVNQFARQNQHPLLCSLEK 101


>gi|167623651|ref|YP_001673945.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           halifaxensis HAW-EB4]
 gi|189082479|sp|B0TQ07|CLPS_SHEHH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|167353673|gb|ABZ76286.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           halifaxensis HAW-EB4]
          Length = 102

 Score =  164 bits (415), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 46/101 (45%), Positives = 69/101 (68%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           ++  +N    E    ++ + P +Y+V+L ND+YTPM+FVI +LQ FF KD + A  IML 
Sbjct: 1   MSRTENIEQIEESVEAEFKQPSMYKVILNNDDYTPMDFVIEILQLFFKKDEQQATEIMLA 60

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +HH+G G CG+Y + IAE KV QV  ++RQ+Q+PL C +E+
Sbjct: 61  IHHKGKGICGIYPFGIAETKVAQVNQFARQNQHPLLCSLEE 101


>gi|192291927|ref|YP_001992532.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris TIE-1]
 gi|192285676|gb|ACF02057.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris TIE-1]
          Length = 115

 Score =  164 bits (415), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 4/116 (3%)

Query: 23  SFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF 82
                 D   +               +   + + P LYRVL++ND+YTPMEFV+HVL+ F
Sbjct: 4   PLAMAGDGGRSGPSTP----STSVITKTKPRTKRPNLYRVLILNDDYTPMEFVVHVLEKF 59

Query: 83  FYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           F  D E A  +ML VHH GIGECGV+ YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 60  FQMDVEAATKVMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK 115


>gi|163854197|ref|YP_001642240.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
           extorquens PA1]
 gi|240141657|ref|YP_002966137.1| ATP-dependent Clp protease adaptor protein clpS [Methylobacterium
           extorquens AM1]
 gi|254564165|ref|YP_003071260.1| ATP-dependent Clp protease adaptor protein clpS [Methylobacterium
           extorquens DM4]
 gi|163665802|gb|ABY33169.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
           extorquens PA1]
 gi|240011634|gb|ACS42860.1| ATP-dependent Clp protease adaptor protein clpS [Methylobacterium
           extorquens AM1]
 gi|254271443|emb|CAX27458.1| ATP-dependent Clp protease adaptor protein clpS [Methylobacterium
           extorquens DM4]
          Length = 112

 Score =  164 bits (415), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 55/112 (49%), Positives = 78/112 (69%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           M  +   +    +  +      R   + + P LYRVLL+ND+YTPMEFV+HV++ FF K 
Sbjct: 1   MRAASTPRSPGDDDRSGTAIITRTKPRAKRPSLYRVLLLNDDYTPMEFVVHVVERFFNKS 60

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           H+ A  IM+ VHH G+GECGV+ YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 61  HDDAYQIMMHVHHNGVGECGVFTYEVAETKVTQVMDFARKHQHPLQCVMEKK 112


>gi|220920395|ref|YP_002495696.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
           nodulans ORS 2060]
 gi|219945001|gb|ACL55393.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
           nodulans ORS 2060]
          Length = 135

 Score =  164 bits (415), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 54/91 (59%), Positives = 70/91 (76%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R     + P LYRVLL+ND+YTPMEFV+HV++ FF K  E A  IML VH  G+GECGV
Sbjct: 45  TRTRPITKRPNLYRVLLLNDDYTPMEFVVHVVERFFNKSREDATRIMLHVHQNGVGECGV 104

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 105 FTYEVAETKVTQVMDFARKHQHPLQCVMEKK 135


>gi|170740498|ref|YP_001769153.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
           sp. 4-46]
 gi|168194772|gb|ACA16719.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
           sp. 4-46]
          Length = 142

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 54/119 (45%), Positives = 75/119 (63%)

Query: 20  ALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL 79
            +++               +  +      R     + P LYRVLL+ND+YTPMEFV+HV+
Sbjct: 24  PIVAATPRTPGNGGAGQGGDGRSGTAVITRTRPVTKRPNLYRVLLLNDDYTPMEFVVHVV 83

Query: 80  QNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + FF K  E A  IML VH  G+GECGV+ YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 84  ERFFNKSREDATRIMLHVHQNGVGECGVFTYEVAETKVTQVMDFARKHQHPLQCVMEKK 142


>gi|110834145|ref|YP_693004.1| hypothetical protein ABO_1284 [Alcanivorax borkumensis SK2]
 gi|110647256|emb|CAL16732.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
          Length = 124

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 45/104 (43%), Positives = 68/104 (65%), Gaps = 1/104 (0%)

Query: 35  KGIAEFDNCLDSEVRF-SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
              ++ D   D  V     K++ P +Y+VL++ND+YTPM+FV+ +L++FF  D E A  +
Sbjct: 20  DSSSDPDRHGDLAVEEAKPKLKPPSMYKVLMLNDDYTPMDFVVEILEDFFNLDREQATRV 79

Query: 94  MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           ML VH +G   CGVY  +IAE K  QV+ Y+R++Q+PL C +EQ
Sbjct: 80  MLTVHTEGKAVCGVYPQDIAETKATQVVEYARENQHPLMCQVEQ 123


>gi|83593445|ref|YP_427197.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodospirillum
           rubrum ATCC 11170]
 gi|83576359|gb|ABC22910.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodospirillum
           rubrum ATCC 11170]
          Length = 137

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 52/91 (57%), Positives = 71/91 (78%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
           V+   K + P +YRVL++ND+YTPMEFV+HVL+ FF K HE A  IML VH +G+G CGV
Sbjct: 47  VKAKPKTKKPSMYRVLMLNDDYTPMEFVVHVLERFFGKTHEEATNIMLHVHQRGVGLCGV 106

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           Y YE+AE KV+QVM+ +R+ Q+PLQC +E++
Sbjct: 107 YTYEVAETKVSQVMDLARRSQHPLQCTLEKE 137


>gi|329889200|ref|ZP_08267543.1| ATP-dependent Clp protease adaptor protein ClpS family protein
           [Brevundimonas diminuta ATCC 11568]
 gi|328844501|gb|EGF94065.1| ATP-dependent Clp protease adaptor protein ClpS family protein
           [Brevundimonas diminuta ATCC 11568]
          Length = 109

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 52/104 (50%), Positives = 68/104 (65%)

Query: 34  KKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
           + G                K++ P LYRVL++ND+YTPMEFVI+VL+ FF K  E A  I
Sbjct: 5   RPGEQGGGAGAAVVTETKPKLQRPSLYRVLILNDDYTPMEFVIYVLERFFQKSREDATRI 64

Query: 94  MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           ML VH  G+G CGV+ YE+AE KV QV+  +R+HQ+PLQC ME+
Sbjct: 65  MLHVHQHGVGVCGVFTYEVAETKVAQVVETARRHQHPLQCTMEK 108


>gi|149201108|ref|ZP_01878083.1| ATP-dependent Clp protease adaptor protein ClpS [Roseovarius sp.
           TM1035]
 gi|149145441|gb|EDM33467.1| ATP-dependent Clp protease adaptor protein ClpS [Roseovarius sp.
           TM1035]
          Length = 112

 Score =  163 bits (414), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 52/112 (46%), Positives = 71/112 (63%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           M    +   G  E        V    K + P LY+VLL+ND+YTPMEFV+ VL+ FF   
Sbjct: 1   MIQHPITMTGPKEDAGDPAVVVATRPKTKRPPLYKVLLLNDDYTPMEFVVAVLERFFGMS 60

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           H  A  IML VH +G+   GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 61  HAQAFEIMLTVHKKGLAVVGVFSHEIAETKVAQVMDFARRHQHPLQCTMEKE 112


>gi|91977524|ref|YP_570183.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris BisB5]
 gi|91683980|gb|ABE40282.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris BisB5]
          Length = 109

 Score =  163 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 56/91 (61%), Positives = 72/91 (79%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            +   K + P LYRVL++ND+YTPMEFV+HVL+ FF  D E A  +ML VHH GIGECGV
Sbjct: 19  TKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLEKFFQMDVEAATQVMLHVHHHGIGECGV 78

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 79  FTYEIAETKVTQVMDFARKHQHPLQCVMEKK 109


>gi|85704460|ref|ZP_01035562.1| ATP-dependent Clp protease, adaptor protein ClpS [Roseovarius sp.
           217]
 gi|85670868|gb|EAQ25727.1| ATP-dependent Clp protease, adaptor protein ClpS [Roseovarius sp.
           217]
          Length = 112

 Score =  163 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 52/112 (46%), Positives = 71/112 (63%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           M    +   G  E        V    K + P LY+VLL+ND+YTPMEFV+ VL+ FF   
Sbjct: 1   MIQHPITMAGPDEDAGDPAVVVATRPKTKRPPLYKVLLLNDDYTPMEFVVAVLERFFGMS 60

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           H  A  IML VH +G+   GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 61  HAQAFEIMLTVHKKGLAVVGVFSHEIAETKVAQVMDFARRHQHPLQCTMEKE 112


>gi|163733946|ref|ZP_02141388.1| ATP-dependent Clp protease, putative [Roseobacter litoralis Och
           149]
 gi|161393057|gb|EDQ17384.1| ATP-dependent Clp protease, putative [Roseobacter litoralis Och
           149]
          Length = 113

 Score =  163 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 50/109 (45%), Positives = 76/109 (69%), Gaps = 2/109 (1%)

Query: 30  SRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
             M+ +   + D  + +  +   K + P LY+VLL+ND++TPMEFV+HVL+ FF  +H  
Sbjct: 6   YMMSDRSEDDGDTSILTATK--PKTKRPPLYKVLLLNDDFTPMEFVVHVLERFFGLNHAQ 63

Query: 90  AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           A  IML VH +G+   GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 64  AFEIMLTVHKKGVAVVGVFSHEIAETKVAQVMDFARRHQHPLQCTMEKE 112


>gi|289208442|ref|YP_003460508.1| ATP-dependent Clp protease adaptor protein ClpS [Thioalkalivibrio
           sp. K90mix]
 gi|288944073|gb|ADC71772.1| ATP-dependent Clp protease adaptor protein ClpS [Thioalkalivibrio
           sp. K90mix]
          Length = 108

 Score =  163 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 47/107 (43%), Positives = 72/107 (67%), Gaps = 1/107 (0%)

Query: 32  MNKKGIAEFDNCLDSEVRF-SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
           M++K     D+  ++ V     +++ P+ Y+V+L+ND++TPMEFV+ VL+ FF  D E A
Sbjct: 1   MSEKKPQIPDHDSNTAVEESRPELKPPRQYKVVLLNDDFTPMEFVVEVLETFFSMDREKA 60

Query: 91  KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             +ML VH +G G CG+Y  ++AE KV QV +Y+R HQ+PL C ME+
Sbjct: 61  TQVMLHVHTRGKGICGIYTRDVAETKVAQVNDYARSHQHPLLCSMEE 107


>gi|56459784|ref|YP_155065.1| ATP-dependent Clp protease adaptor protein ClpS [Idiomarina
           loihiensis L2TR]
 gi|67460203|sp|Q5R0C3|CLPS_IDILO RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|56178794|gb|AAV81516.1| Uncharacterized conserved protein [Idiomarina loihiensis L2TR]
          Length = 102

 Score =  163 bits (413), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 48/102 (47%), Positives = 71/102 (69%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           +++FD+   S+     +++ P +Y+V++ ND+YTPM+FVI VL  FF  D E A   ML+
Sbjct: 1   MSQFDHQHLSDTEEKQELKPPSMYKVIINNDDYTPMDFVIEVLMRFFKMDQERATDTMLQ 60

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           VH++G   CGVY+ EIAE KV QV  Y+R++Q+PL C MEQ+
Sbjct: 61  VHYKGKAVCGVYSAEIAETKVVQVNQYARENQHPLLCTMEQE 102


>gi|254465322|ref|ZP_05078733.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacterales
           bacterium Y4I]
 gi|206686230|gb|EDZ46712.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacterales
           bacterium Y4I]
          Length = 121

 Score =  163 bits (413), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 48/114 (42%), Positives = 72/114 (63%)

Query: 25  IFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFY 84
           + M    +     ++ D       +   K + P  Y+VLL+ND+YTPMEFV+ VL+ FF 
Sbjct: 7   LLMPLQPIMMTDHSDDDTEAGVLTKTRPKTKRPPRYKVLLLNDDYTPMEFVVMVLERFFG 66

Query: 85  KDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
             H  A  IML VH +G+   GV+++E+AE KV QVM+++R+HQ+PLQC ME++
Sbjct: 67  MTHAQAFEIMLTVHKKGVAVVGVFSHEVAETKVGQVMDFARRHQHPLQCTMEKE 120


>gi|260459200|ref|ZP_05807455.1| ATP-dependent Clp protease adaptor protein ClpS [Mesorhizobium
           opportunistum WSM2075]
 gi|259034754|gb|EEW36010.1| ATP-dependent Clp protease adaptor protein ClpS [Mesorhizobium
           opportunistum WSM2075]
          Length = 131

 Score =  163 bits (413), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 62/131 (47%), Positives = 86/131 (65%), Gaps = 1/131 (0%)

Query: 9   MYHRVKRDGILALMSFIFMADSRMNKKGIA-EFDNCLDSEVRFSSKVRVPKLYRVLLVND 67
           M  R ++D +   ++         N  G   E         R  +K + P LYRVL++ND
Sbjct: 1   MRIRKRQDYVTIGLTATTQVARMQNGGGDGNEAGRGTAVITRTKTKTKKPSLYRVLILND 60

Query: 68  NYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQH 127
           +YTPMEFV+HVL+ FF KD E A  IML VH+ G+GECGVY +E+AE KV+QVM+++RQ+
Sbjct: 61  DYTPMEFVVHVLERFFQKDREAATRIMLHVHNHGVGECGVYTFEVAETKVSQVMDFARQN 120

Query: 128 QYPLQCIMEQK 138
           Q+PLQC+ME+K
Sbjct: 121 QHPLQCVMEKK 131


>gi|89056376|ref|YP_511827.1| ATP-dependent Clp protease adaptor protein ClpS [Jannaschia sp.
           CCS1]
 gi|88865925|gb|ABD56802.1| ATP-dependent Clp protease adaptor protein ClpS [Jannaschia sp.
           CCS1]
          Length = 116

 Score =  163 bits (413), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 52/113 (46%), Positives = 76/113 (67%), Gaps = 3/113 (2%)

Query: 26  FMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK 85
            MAD   N  G    D  +    +  +K + P +Y+V+L+ND+YTPMEFV+HVL+ FF  
Sbjct: 6   MMADEPDNVDG---GDGDVSVATKTKTKTQRPPMYKVMLLNDDYTPMEFVVHVLERFFGI 62

Query: 86  DHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            H  A  IML VH +G+   GV+++EIAE KV QVM+++R++Q+PLQC ME++
Sbjct: 63  THSQAVEIMLVVHKKGLAVVGVFSHEIAETKVAQVMDFARRNQHPLQCTMEKE 115


>gi|67460482|sp|Q6N535|CLPS2_RHOPA RecName: Full=ATP-dependent Clp protease adapter protein ClpS 2
          Length = 109

 Score =  163 bits (413), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 55/91 (60%), Positives = 72/91 (79%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            +   + + P LYRVL++ND+YTPMEFV+HVL+ FF  D E A  +ML VHH GIGECGV
Sbjct: 19  TKTKPRTKRPNLYRVLILNDDYTPMEFVVHVLEKFFQMDVEAATKVMLHVHHHGIGECGV 78

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 79  FTYEIAETKVTQVMDFARKHQHPLQCVMEKK 109


>gi|317491428|ref|ZP_07949864.1| ATP-dependent Clp protease adaptor protein ClpS [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316920975|gb|EFV42298.1| ATP-dependent Clp protease adaptor protein ClpS [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 107

 Score =  163 bits (413), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 47/107 (43%), Positives = 68/107 (63%), Gaps = 2/107 (1%)

Query: 31  RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
             N+     F+   DS  +   +V+ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A
Sbjct: 1   MANQNDWLNFEQLADS--KQIDEVKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERA 58

Query: 91  KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             +ML VH++G   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 59  TQLMLTVHYKGKAICGVFTAEVAETKVAHVNRYARENEHPLLCTLEK 105


>gi|162452665|ref|YP_001615032.1| hypothetical protein sce4389 [Sorangium cellulosum 'So ce 56']
 gi|161163247|emb|CAN94552.1| hypothetical protein sce4389 [Sorangium cellulosum 'So ce 56']
          Length = 132

 Score =  163 bits (412), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 47/126 (37%), Positives = 70/126 (55%), Gaps = 5/126 (3%)

Query: 13  VKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPM 72
            +R G LA++   FM +    ++     D   D       KV  P+ Y+V+  ND+YT M
Sbjct: 12  ARRGGALAILPDGFMPNDPEERE-----DRQGDLATERERKVEKPRRYKVVFHNDDYTTM 66

Query: 73  EFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQ 132
           EFV+ VL  FF++    A  IML VHH+G G  GVY  ++AE KV QV +++++H  PL+
Sbjct: 67  EFVVLVLMKFFHRTETEATHIMLSVHHRGHGVAGVYTKDVAETKVAQVQDFAKEHGMPLR 126

Query: 133 CIMEQK 138
              E +
Sbjct: 127 LTAEPE 132


>gi|115525406|ref|YP_782317.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris BisA53]
 gi|115519353|gb|ABJ07337.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris BisA53]
          Length = 109

 Score =  163 bits (412), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 54/91 (59%), Positives = 72/91 (79%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            +   + + P +YRVL++ND+YTPMEFV+HVL+ FF  D E A  +ML VHH GIGECGV
Sbjct: 19  TKTKPRTKRPSMYRVLILNDDYTPMEFVVHVLEKFFQMDVEAATKVMLHVHHHGIGECGV 78

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 79  FTYEIAETKVTQVMDFARKHQHPLQCVMEKK 109


>gi|254474220|ref|ZP_05087611.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudovibrio sp.
           JE062]
 gi|211956750|gb|EEA91959.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudovibrio sp.
           JE062]
          Length = 109

 Score =  163 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 56/93 (60%), Positives = 75/93 (80%)

Query: 46  SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
           +  +   K + P LYRVLL+ND+YTPMEFVIHV++ FF+ D E+A  IML VHH G+GEC
Sbjct: 17  TVTKPKPKTKRPSLYRVLLLNDDYTPMEFVIHVVERFFHLDRESATQIMLHVHHHGVGEC 76

Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           GV+ YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 77  GVFTYEVAETKVTQVMDFARKHQHPLQCVMEKK 109


>gi|146282647|ref|YP_001172800.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           stutzeri A1501]
 gi|145570852|gb|ABP79958.1| ATP-dependent Clp protease adaptor protein clpS [Pseudomonas
           stutzeri A1501]
          Length = 167

 Score =  163 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 1/126 (0%)

Query: 12  RVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTP 71
           R +    +   + I +     ++      D    +      +++ P +Y+V++ ND+YTP
Sbjct: 41  RPRTVMRMHAFAQIRL-TFNQDRPLEDGDDASGLAVEEAKPQLKAPPMYKVVMFNDDYTP 99

Query: 72  MEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPL 131
           M+FV+ VL+  F    E A  IML VH +G   CGVY  ++AE K  QV  Y+R+ Q+PL
Sbjct: 100 MDFVVEVLEGIFNHSREQATKIMLAVHTEGQAVCGVYTRDVAETKAMQVNQYARECQHPL 159

Query: 132 QCIMEQ 137
            C +E+
Sbjct: 160 LCEIEK 165


>gi|323138622|ref|ZP_08073689.1| ATP-dependent Clp protease adaptor protein ClpS [Methylocystis sp.
           ATCC 49242]
 gi|322396110|gb|EFX98644.1| ATP-dependent Clp protease adaptor protein ClpS [Methylocystis sp.
           ATCC 49242]
          Length = 130

 Score =  163 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 52/91 (57%), Positives = 69/91 (75%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            +   + R P +YRVLL+ND+YT  EFV+ VL+ +F K  E A  IML VH+ G+GECGV
Sbjct: 40  TQARQQTRRPNMYRVLLLNDDYTTQEFVVIVLRKYFNKSVEEATRIMLHVHNHGVGECGV 99

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           Y YE+AE KV QVM+++R+HQ+PLQCIME+K
Sbjct: 100 YTYEVAETKVTQVMDFARKHQHPLQCIMEKK 130


>gi|222148871|ref|YP_002549828.1| ATP-dependent Clp protease adaptor protein ClpS [Agrobacterium
           vitis S4]
 gi|221735857|gb|ACM36820.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 117

 Score =  163 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 56/99 (56%), Positives = 75/99 (75%)

Query: 40  FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
            +       R   K + P LYRVLL+ND+YTPMEFVIH+L+ FF KD E A  +ML VH+
Sbjct: 19  PNRGTSVITRTKPKTKKPNLYRVLLLNDDYTPMEFVIHILERFFQKDREAATLVMLHVHN 78

Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            G+GECGV+ YE+AE KV+QVM+++RQH++PLQC+ME+K
Sbjct: 79  HGVGECGVFTYEVAETKVSQVMDFARQHEHPLQCVMEKK 117


>gi|104781332|ref|YP_607830.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           entomophila L48]
 gi|95110319|emb|CAK15026.1| ATP-dependent Clp protease adaptor protein clpS [Pseudomonas
           entomophila L48]
          Length = 124

 Score =  163 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 43/120 (35%), Positives = 68/120 (56%)

Query: 18  ILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIH 77
           + + +   F  D   + +   E D    +       ++ P +Y+V+L ND+YTPM+FV+ 
Sbjct: 3   VPSEIRLTFNQDRPQSNEDGHEDDGSGLAVQEAKPILQAPPMYKVVLFNDDYTPMDFVVE 62

Query: 78  VLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           VL+ FF  + E A  IML VH +G   CG++  +IAE K  QV  Y+R+ Q+PL C +E+
Sbjct: 63  VLETFFNLNRELATKIMLTVHTEGRAVCGLFTRDIAETKAMQVNQYARESQHPLLCEIEK 122


>gi|110678604|ref|YP_681611.1| ATP-dependent Clp protease, putative [Roseobacter denitrificans OCh
           114]
 gi|123362148|sp|Q16AR8|CLPS_ROSDO RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|109454720|gb|ABG30925.1| ATP-dependent Clp protease, putative [Roseobacter denitrificans OCh
           114]
          Length = 113

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 50/108 (46%), Positives = 76/108 (70%), Gaps = 2/108 (1%)

Query: 31  RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
            M+ +   + D  + +  +   K + P LY+VLL+ND++TPMEFV+HVL+ FF  +H  A
Sbjct: 7   MMSDRSEDDGDTSILTATK--PKTKRPPLYKVLLLNDDFTPMEFVVHVLERFFGLNHAQA 64

Query: 91  KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
             IML VH +G+   GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 65  FEIMLTVHKKGVAVVGVFSHEIAETKVAQVMDFARRHQHPLQCTMEKE 112


>gi|300716062|ref|YP_003740865.1| ATP-dependent Clp protease adaptor protein [Erwinia billingiae
           Eb661]
 gi|299061898|emb|CAX59014.1| ATP-dependent Clp protease adaptor protein [Erwinia billingiae
           Eb661]
          Length = 106

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 48/107 (44%), Positives = 68/107 (63%), Gaps = 2/107 (1%)

Query: 31  RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
             N      F++  D ++R    ++ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A
Sbjct: 1   MANTNDWLNFEHLADDKLREG--LKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDTERA 58

Query: 91  KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             +ML VH+QG   CGVY  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 59  TQLMLAVHYQGKAICGVYTAEVAETKVAHVNKYARENEHPLLCTLEK 105


>gi|163868096|ref|YP_001609300.1| ATP-dependent Clp protease adaptor protein ClpS [Bartonella
           tribocorum CIP 105476]
 gi|161017747|emb|CAK01305.1| Clp protease adaptor protein [Bartonella tribocorum CIP 105476]
          Length = 123

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 57/107 (53%), Positives = 74/107 (69%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
              K   E  +      +  +K++ PKLYRVLL+ND+YTPM+FV+ VL+NFF K  E A 
Sbjct: 17  EKGKNWDEGRHSAVIIPKARAKLQKPKLYRVLLLNDDYTPMDFVVFVLKNFFKKSFEEAT 76

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            IML VHH GIGECG Y YE+AEMK+ QV   +RQ+++PLQC+ME K
Sbjct: 77  RIMLNVHHNGIGECGTYTYEVAEMKIVQVRECARQNEHPLQCVMEWK 123


>gi|157962354|ref|YP_001502388.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           pealeana ATCC 700345]
 gi|189082480|sp|A8H5L6|CLPS_SHEPA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|157847354|gb|ABV87853.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           pealeana ATCC 700345]
          Length = 102

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 47/101 (46%), Positives = 70/101 (69%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           ++  +N    E    S+++ P +Y+V+L ND+YTPM+FVI +LQ FF KD + A  IML 
Sbjct: 1   MSRTENIEHVEESVESELKQPSMYKVILNNDDYTPMDFVIEILQLFFKKDEQQATEIMLA 60

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +HH+G G CG+Y + IAE KV QV  ++RQ+Q+PL C +E+
Sbjct: 61  IHHKGKGICGIYPFGIAETKVAQVNQFARQNQHPLLCSLEE 101


>gi|304391581|ref|ZP_07373523.1| ATP-dependent Clp protease adapter protein ClpS 1 [Ahrensia sp.
           R2A130]
 gi|303295810|gb|EFL90168.1| ATP-dependent Clp protease adapter protein ClpS 1 [Ahrensia sp.
           R2A130]
          Length = 130

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/99 (54%), Positives = 71/99 (71%)

Query: 40  FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
             N      R   K++ P LYRVLL+ND++TPMEFVI +L  FF  + E A  +ML VH 
Sbjct: 32  TGNDTGVITRTKPKLKKPSLYRVLLLNDDFTPMEFVIEILARFFQMNMEQATQVMLHVHQ 91

Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            G+GECGVY YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 92  NGVGECGVYTYEVAETKVTQVMDHARKHQHPLQCVMEKK 130


>gi|254786019|ref|YP_003073448.1| ATP-dependent Clp protease adaptor protein ClpS [Teredinibacter
           turnerae T7901]
 gi|237686070|gb|ACR13334.1| Sua5/YciO/YrdC/YwlC [Teredinibacter turnerae T7901]
          Length = 124

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 69/102 (67%), Gaps = 3/102 (2%)

Query: 38  AEFDNCLDSEV---RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
            + D+  DS +       +++ P +Y+V+L+ND+YTPMEFV+HVL++FF  D E A  +M
Sbjct: 15  DDVDSGADSGLALQEAKPRLKKPPMYKVVLLNDDYTPMEFVVHVLESFFNMDREKATHVM 74

Query: 95  LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
           L VH +G   CGVY+ ++AE K  QV  ++RQ+++PL C +E
Sbjct: 75  LTVHTKGKAVCGVYSRDVAETKAMQVNQFARQNEHPLLCEIE 116


>gi|213424208|pdb|3DNJ|A Chain A, The Structure Of The Caulobacter Crescentus Clps Protease
           Adaptor Protein In Complex With A N-End Rule Peptide
 gi|213424209|pdb|3DNJ|B Chain B, The Structure Of The Caulobacter Crescentus Clps Protease
           Adaptor Protein In Complex With A N-End Rule Peptide
 gi|228312130|pdb|3G19|A Chain A, The Structure Of The Caulobacter Crescentus Clps Protease
           Adaptor Protein In Complex With Lll Tripeptide
 gi|228312330|pdb|3GQ0|A Chain A, The Structure Of The Caulobacter Crescentus Clps Protease
           Adaptor Protein - Apo Structure With No Peptide
 gi|228312331|pdb|3GQ0|B Chain B, The Structure Of The Caulobacter Crescentus Clps Protease
           Adaptor Protein - Apo Structure With No Peptide
 gi|229597899|pdb|3GQ1|A Chain A, The Structure Of The Caulobacter Crescentus Clps Protease
           Adaptor Protein In Complex With A Wlfvqrdske Decapeptide
 gi|229597900|pdb|3GQ1|B Chain B, The Structure Of The Caulobacter Crescentus Clps Protease
           Adaptor Protein In Complex With A Wlfvqrdske Decapeptide
 gi|229597907|pdb|3GW1|A Chain A, The Structure Of The Caulobacter Crescentus Clps Protease
           Adaptor Protein In Complex With Fgg Tripeptide
 gi|229597908|pdb|3GW1|B Chain B, The Structure Of The Caulobacter Crescentus Clps Protease
           Adaptor Protein In Complex With Fgg Tripeptide
          Length = 85

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 50/84 (59%), Positives = 65/84 (77%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
            + P LYRVL++ND+YTPMEFV++VL+ FF K  E A  IML VH  G+G CGVY YE+A
Sbjct: 1   TQKPSLYRVLILNDDYTPMEFVVYVLERFFNKSREDATRIMLHVHQNGVGVCGVYTYEVA 60

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E KV QV++ +R+HQ+PLQC ME+
Sbjct: 61  ETKVAQVIDSARRHQHPLQCTMEK 84


>gi|149913907|ref|ZP_01902439.1| ATP-dependent Clp protease, putative [Roseobacter sp. AzwK-3b]
 gi|149812191|gb|EDM72022.1| ATP-dependent Clp protease, putative [Roseobacter sp. AzwK-3b]
          Length = 107

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 49/107 (45%), Positives = 72/107 (67%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
           M        +      V+  +K + P LY+VLL+ND+YTPMEFV+ VL+ FF  +H  A 
Sbjct: 1   MTGDDENGDEGDTSVVVKTRAKTKRPPLYKVLLLNDDYTPMEFVVAVLERFFGMNHAQAF 60

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            +ML VH +G+   GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 61  EVMLTVHKKGVAVVGVFSHEIAETKVAQVMDFARRHQHPLQCTMEKE 107


>gi|254486976|ref|ZP_05100181.1| ATP-dependent Clp protease adaptor protein ClpS [Roseobacter sp.
           GAI101]
 gi|214043845|gb|EEB84483.1| ATP-dependent Clp protease adaptor protein ClpS [Roseobacter sp.
           GAI101]
          Length = 113

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 51/112 (45%), Positives = 75/112 (66%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           M    +   G    D+  D   +   K + P LY+V+L+ND++TPMEFV+HVL+ FF  +
Sbjct: 1   MRLDDLMMAGKDRDDDETDLLTKTKPKTKRPPLYKVMLLNDDFTPMEFVVHVLERFFGLN 60

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           H  A  IML VH +G+   GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 61  HAQAFEIMLTVHKKGLAVVGVFSHEIAETKVAQVMDFARRHQHPLQCTMEKE 112


>gi|212634694|ref|YP_002311219.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           piezotolerans WP3]
 gi|226706569|sp|B8CLI1|CLPS_SHEPW RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|212556178|gb|ACJ28632.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           piezotolerans WP3]
          Length = 102

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 46/101 (45%), Positives = 69/101 (68%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           ++  +N    E    S+++ P +Y+V+L ND+YTPM+FVI +LQ FF KD   A  IML 
Sbjct: 1   MSRTENIEHVEESVESELKQPSMYKVILNNDDYTPMDFVIEILQLFFRKDEAQATEIMLA 60

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +HH+G G CG+Y + IAE KV QV  ++RQ+++PL C +E+
Sbjct: 61  IHHKGKGICGIYPFGIAETKVAQVNQFARQNEHPLLCSLEE 101


>gi|50084541|ref|YP_046051.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter sp.
           ADP1]
 gi|49530517|emb|CAG68229.1| substrate modulator for ClpAP, directs protease activity towards
           aggregated proteins [Acinetobacter sp. ADP1]
          Length = 137

 Score =  162 bits (410), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 44/110 (40%), Positives = 67/110 (60%), Gaps = 1/110 (0%)

Query: 29  DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
           + R+      E +  +  +     +++ P LY V+L+ND+YTPM+FVI +LQ +F  + +
Sbjct: 28  NPRLGDSQSDEPEGDIAVQT-APPELKRPPLYAVVLLNDDYTPMDFVIEILQQYFALNLD 86

Query: 89  TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            A  +ML VH++G G  GVY  +IAE K NQV NY+R   +PL C +E K
Sbjct: 87  QATQVMLTVHYEGKGVAGVYPRDIAETKANQVNNYARSQGHPLLCQIEPK 136


>gi|10442011|gb|AAG17283.1|AF254897_2 YljA [Bradyrhizobium japonicum USDA 110]
          Length = 97

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/91 (63%), Positives = 73/91 (80%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            +   K + P LYRVL++ND+YTPMEFV+HVL+ FF KD E A  IML VHH GIGECGV
Sbjct: 7   TKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLEKFFQKDVEAATKIMLHVHHHGIGECGV 66

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           + YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 67  FTYEIAETKVTQVMDFARKHQHPLQCVMEKK 97


>gi|291616886|ref|YP_003519628.1| ClpS [Pantoea ananatis LMG 20103]
 gi|291151916|gb|ADD76500.1| ClpS [Pantoea ananatis LMG 20103]
 gi|327393314|dbj|BAK10736.1| ATP-dependent Clp protease adaptor protein ClpS [Pantoea ananatis
           AJ13355]
          Length = 106

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 49/107 (45%), Positives = 66/107 (61%), Gaps = 2/107 (1%)

Query: 31  RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
             N      F+   D +VR    ++ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A
Sbjct: 1   MANTNDWLNFEQLADDKVREG--LKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERA 58

Query: 91  KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             +MLKVH+ G   CGV+  E+AE K  QV NY+R + +PL C +E+
Sbjct: 59  TQLMLKVHYHGKAICGVFTAEVAETKAAQVNNYARDNHHPLLCTLEK 105


>gi|152969471|ref|YP_001334580.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|206576057|ref|YP_002239467.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella
           pneumoniae 342]
 gi|238893943|ref|YP_002918677.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella
           pneumoniae NTUH-K2044]
 gi|288936315|ref|YP_003440374.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella
           variicola At-22]
 gi|290510629|ref|ZP_06549999.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella sp.
           1_1_55]
 gi|329998510|ref|ZP_08303132.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella sp. MS
           92-3]
 gi|166214736|sp|A6T6X9|CLPS_KLEP7 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238066652|sp|B5XYB2|CLPS_KLEP3 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|150954320|gb|ABR76350.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|206565115|gb|ACI06891.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella
           pneumoniae 342]
 gi|238546259|dbj|BAH62610.1| ATP-dependent Clp protease adaptor protein [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|288891024|gb|ADC59342.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella
           variicola At-22]
 gi|289777345|gb|EFD85343.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella sp.
           1_1_55]
 gi|328538655|gb|EGF64752.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella sp. MS
           92-3]
          Length = 105

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 50/106 (47%), Positives = 74/106 (69%), Gaps = 2/106 (1%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
           M+K+   +F++ +D EVR    ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A 
Sbjct: 1   MSKRDWLDFEHLVDDEVR--DAIKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERAT 58

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            +ML VH++G   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 59  QLMLTVHYEGKAICGVFTAEVAETKVAMVNQYARENEHPLLCTLEK 104


>gi|117925058|ref|YP_865675.1| ATP-dependent Clp protease adaptor protein ClpS [Magnetococcus sp.
           MC-1]
 gi|117608814|gb|ABK44269.1| ATP-dependent Clp protease adaptor protein ClpS [Magnetococcus sp.
           MC-1]
          Length = 113

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 48/109 (44%), Positives = 69/109 (63%), Gaps = 4/109 (3%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKV----RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
           N  G    D+ +D +   +  +    R P +YRV+L+ND++TPMEFV+ +L +FF K  E
Sbjct: 4   NCSGPTMSDHNIDHDTSVAVHLDVVVREPPMYRVVLLNDDFTPMEFVVELLMHFFRKTAE 63

Query: 89  TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            A  IML +HH+G+G CG Y  EIAE KV QV  ++R + +PL+C ME 
Sbjct: 64  QATQIMLNIHHEGVGVCGTYPREIAETKVAQVHQHARTNGHPLKCRMEP 112


>gi|56698476|ref|YP_168851.1| ATP-dependent Clp protease, adaptor protein ClpS [Ruegeria pomeroyi
           DSS-3]
 gi|67460174|sp|Q5LMA7|CLPS_SILPO RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|56680213|gb|AAV96879.1| ATP-dependent Clp protease, adaptor protein ClpS [Ruegeria pomeroyi
           DSS-3]
          Length = 113

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 50/112 (44%), Positives = 74/112 (66%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           M           + DN     ++   + + P LY+VLL+ND+YTPMEFV+HVL+ FF  +
Sbjct: 1   MTAQLHMMSDKHDQDNDASVLLQTRPRTKRPPLYKVLLLNDDYTPMEFVVHVLERFFGMN 60

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           H  A  IML VH +G+   GV+++EIAE KV+ VM+++R+HQ+PLQC ME++
Sbjct: 61  HAQAFEIMLTVHKKGVAVVGVFSHEIAETKVSLVMDFARRHQHPLQCTMEKE 112


>gi|237809064|ref|YP_002893504.1| ATP-dependent Clp protease adaptor protein ClpS [Tolumonas auensis
           DSM 9187]
 gi|237501325|gb|ACQ93918.1| ATP-dependent Clp protease adaptor protein ClpS [Tolumonas auensis
           DSM 9187]
          Length = 104

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 47/102 (46%), Positives = 68/102 (66%)

Query: 36  GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
           G         +     ++++ P +Y+V+L+ND+YTPM+FV+ VLQ FF  D E A  +ML
Sbjct: 2   GKTRVSPTPGTAAESKTEIQPPSMYKVVLLNDDYTPMDFVVEVLQRFFRMDLEKATQVML 61

Query: 96  KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            VH+ G G CGVY  +IAE KV+QV +Y+R+H++PL C MEQ
Sbjct: 62  AVHYDGKGICGVYTADIAETKVDQVNHYARKHEHPLLCTMEQ 103


>gi|256822682|ref|YP_003146645.1| ATP-dependent Clp protease adaptor protein ClpS [Kangiella
           koreensis DSM 16069]
 gi|256796221|gb|ACV26877.1| ATP-dependent Clp protease adaptor protein ClpS [Kangiella
           koreensis DSM 16069]
          Length = 115

 Score =  161 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 47/110 (42%), Positives = 71/110 (64%), Gaps = 1/110 (0%)

Query: 29  DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
           D   N+    E ++ L        K++ P +Y+VL++ND+YTPM+FV+ VL+ FF  D E
Sbjct: 4   DQNHNQNHDHEHEHGLAVA-DAKPKLKQPPMYKVLILNDDYTPMDFVVDVLRKFFTMDTE 62

Query: 89  TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            A  +ML+VHH+G G CG +  +IAE KV QV  ++R +Q+PL C+ME +
Sbjct: 63  QATRVMLQVHHEGQGVCGTFTPDIAETKVVQVNEFARANQHPLLCVMEPE 112


>gi|83855083|ref|ZP_00948613.1| ATP-dependent Clp protease, adaptor protein ClpS [Sulfitobacter sp.
           NAS-14.1]
 gi|83941607|ref|ZP_00954069.1| ATP-dependent Clp protease, adaptor protein ClpS [Sulfitobacter sp.
           EE-36]
 gi|83842926|gb|EAP82093.1| ATP-dependent Clp protease, adaptor protein ClpS [Sulfitobacter sp.
           NAS-14.1]
 gi|83847427|gb|EAP85302.1| ATP-dependent Clp protease, adaptor protein ClpS [Sulfitobacter sp.
           EE-36]
          Length = 113

 Score =  161 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 50/112 (44%), Positives = 74/112 (66%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           M    +   G    D+  D   +   K + P LY+V+L+ND++TPMEFV+ VL+ FF  +
Sbjct: 1   MRLDDLMMAGKDRDDDETDLLTKTKPKTKRPPLYKVMLLNDDFTPMEFVVIVLERFFGLN 60

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           H  A  IML VH +G+   GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 61  HAQAFEIMLTVHKKGLAVVGVFSHEIAETKVAQVMDFARRHQHPLQCTMEKE 112


>gi|238792421|ref|ZP_04636055.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
           intermedia ATCC 29909]
 gi|238728347|gb|EEQ19867.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
           intermedia ATCC 29909]
          Length = 106

 Score =  161 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
           N      F++ +    +    ++ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A  
Sbjct: 3   NNNDWLNFEHLVKD--KQKEALKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQ 60

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +ML VH+QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 61  LMLNVHYQGKAICGVFTAEVAETKVAHVNQYARENEHPLLCTLEK 105


>gi|84500364|ref|ZP_00998613.1| ATP-dependent Clp protease, adaptor protein ClpS [Oceanicola
           batsensis HTCC2597]
 gi|84391317|gb|EAQ03649.1| ATP-dependent Clp protease, adaptor protein ClpS [Oceanicola
           batsensis HTCC2597]
          Length = 121

 Score =  161 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 49/90 (54%), Positives = 67/90 (74%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
               K + P LY+VLL+ND+YTPMEFV+ VL+ FF  +H  A  IML VH +G+   GV+
Sbjct: 32  ETRPKTKRPPLYKVLLLNDDYTPMEFVVAVLERFFGMNHAQAFEIMLTVHKKGVAVVGVF 91

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           ++EIAE KV QVM+++RQHQ+PLQC ME++
Sbjct: 92  SHEIAETKVAQVMDFARQHQHPLQCTMEKE 121


>gi|78047604|ref|YP_363779.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78036034|emb|CAJ23725.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 128

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 51/110 (46%), Positives = 69/110 (62%), Gaps = 1/110 (0%)

Query: 29  DSRMNKKGIAEFDNCLDSEVR-FSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDH 87
           + RM +    E ++     V     +V  P  Y+VLL+ND+YTPM+FV+ VL+ FF  + 
Sbjct: 18  NGRMPRNTSHEHEHDHGLMVEASKPEVAPPPRYQVLLLNDDYTPMDFVVTVLEQFFNLNL 77

Query: 88  ETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           E A  IML VH +G G CGVY+ E+AE KV QV  +SR +Q+PL C MEQ
Sbjct: 78  EQATQIMLHVHTRGRGVCGVYSREVAESKVAQVNEFSRMNQHPLLCTMEQ 127


>gi|163751226|ref|ZP_02158454.1| hypothetical protein KT99_13792 [Shewanella benthica KT99]
 gi|161328940|gb|EDQ00014.1| hypothetical protein KT99_13792 [Shewanella benthica KT99]
          Length = 102

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 47/101 (46%), Positives = 69/101 (68%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           + +  N    E R  S++  P +Y+V+L ND+YTPM+FVI +LQ FF K+ + A  IML 
Sbjct: 1   MGKVGNIEHVEERVESELMPPSMYKVVLNNDDYTPMDFVIEILQLFFKKNEQEATDIMLA 60

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +HHQG G CGV+ + IAE KV QV  ++RQ+++PL C +E+
Sbjct: 61  IHHQGKGICGVFPFGIAETKVAQVNQFARQNEHPLLCSLEK 101


>gi|157375024|ref|YP_001473624.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           sediminis HAW-EB3]
 gi|189082481|sp|A8FUH3|CLPS_SHESH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|157317398|gb|ABV36496.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           sediminis HAW-EB3]
          Length = 102

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 48/96 (50%), Positives = 67/96 (69%)

Query: 42  NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
           N    E R  S++  P +Y+V+L ND+YTPM+FVI VLQ FF K+ + A  IML +H+QG
Sbjct: 6   NIEHVEERVESELMPPPMYKVILNNDDYTPMDFVIEVLQLFFKKNEQDATDIMLAIHNQG 65

Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            G CGV+ + IAE KV QV  ++RQ+Q+PL C +E+
Sbjct: 66  KGICGVFPFGIAETKVAQVNQFARQNQHPLLCSLEK 101


>gi|310815392|ref|YP_003963356.1| ATP-dependent Clp protease adaptor protein clpS [Ketogulonicigenium
           vulgare Y25]
 gi|308754127|gb|ADO42056.1| ATP-dependent Clp protease adaptor protein clpS [Ketogulonicigenium
           vulgare Y25]
          Length = 117

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 51/118 (43%), Positives = 72/118 (61%), Gaps = 1/118 (0%)

Query: 21  LMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQ 80
           +     M  S  N  G    +N     ++   K + P LY+V+L+ND+YTPMEFV+ VLQ
Sbjct: 1   MGGTTRMTSSNDND-GTNTPENERGVALKTRPKTKRPPLYKVMLLNDDYTPMEFVVLVLQ 59

Query: 81  NFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            FF  D   +  IML VH +G+    V+ YE+AE KV QVM ++R++Q+PLQC MEQ+
Sbjct: 60  RFFSLDESRSVEIMLAVHTKGVAVVAVFPYEVAETKVAQVMEFARRNQHPLQCTMEQE 117


>gi|328543445|ref|YP_004303554.1| ATP-dependent Clp protease adaptor protein ClpS [Polymorphum gilvum
           SL003B-26A1]
 gi|326413189|gb|ADZ70252.1| ATP-dependent Clp protease adaptor protein ClpS [Polymorphum gilvum
           SL003B-26A1]
          Length = 109

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 57/100 (57%), Positives = 75/100 (75%)

Query: 39  EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           + D       +  +  + P LYRVLL+ND+YTPMEFVIHV++ FF K+ E A  IML VH
Sbjct: 10  DADAGTVVVPKTRTVTKRPNLYRVLLLNDDYTPMEFVIHVVERFFQKNREEATRIMLHVH 69

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           H G+GECGVY YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 70  HHGVGECGVYTYEVAETKVTQVMDFARKHQHPLQCVMEKK 109


>gi|224824763|ref|ZP_03697870.1| ATP-dependent Clp protease adaptor protein ClpS [Lutiella
           nitroferrum 2002]
 gi|224603256|gb|EEG09432.1| ATP-dependent Clp protease adaptor protein ClpS [Lutiella
           nitroferrum 2002]
          Length = 102

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 47/87 (54%), Positives = 68/87 (78%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
            +K R P +Y+VLL+ND+YTPM+FV+ +LQ+FF+K+ E A  IML+VH QG G CGVY  
Sbjct: 15  RAKTRPPSMYKVLLLNDDYTPMDFVVQILQHFFHKNREQATSIMLQVHTQGRGVCGVYTK 74

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           ++A  KV QV+ +++ HQ+PLQC+ME+
Sbjct: 75  DVAATKVEQVLQFAKAHQHPLQCVMEE 101


>gi|228312133|pdb|3G1B|A Chain A, The Structure Of The M53a Mutant Of Caulobacter Crescentus
           Clps Protease Adaptor Protein In Complex With Wlfvqrdske
           Peptide
 gi|228312134|pdb|3G1B|B Chain B, The Structure Of The M53a Mutant Of Caulobacter Crescentus
           Clps Protease Adaptor Protein In Complex With Wlfvqrdske
           Peptide
 gi|290789973|pdb|3G3P|A Chain A, The Structure Of The M53a Mutant Of The Caulobacter
           Crescentus Clps In Complex With A Peptide Containing An
           Amino-Terminal Norleucine Residue
 gi|290789974|pdb|3G3P|B Chain B, The Structure Of The M53a Mutant Of The Caulobacter
           Crescentus Clps In Complex With A Peptide Containing An
           Amino-Terminal Norleucine Residue
          Length = 85

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 49/84 (58%), Positives = 64/84 (76%)

Query: 54  VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
            + P LYRVL++ND+YTP EFV++VL+ FF K  E A  IML VH  G+G CGVY YE+A
Sbjct: 1   TQKPSLYRVLILNDDYTPAEFVVYVLERFFNKSREDATRIMLHVHQNGVGVCGVYTYEVA 60

Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
           E KV QV++ +R+HQ+PLQC ME+
Sbjct: 61  ETKVAQVIDSARRHQHPLQCTMEK 84


>gi|218548404|ref|YP_002382195.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia
           fergusonii ATCC 35469]
 gi|226706568|sp|B7LN49|CLPS_ESCF3 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|218355945|emb|CAQ88560.1| regulatory protein for ClpA substrate specificity [Escherichia
           fergusonii ATCC 35469]
 gi|324113823|gb|EGC07798.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia
           fergusonii B253]
 gi|325496825|gb|EGC94684.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia
           fergusonii ECD227]
          Length = 106

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 49/107 (45%), Positives = 70/107 (65%), Gaps = 2/107 (1%)

Query: 31  RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
                   +FD   + +VR +  ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A
Sbjct: 1   MSKTNDWLDFDQLAEDKVRDA--LKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERA 58

Query: 91  KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             +ML VH+QG   CGV+  E+AE KV  V NY+R++++PL C +E+
Sbjct: 59  TQLMLTVHYQGKAICGVFTAEVAETKVAMVNNYARENEHPLLCTLEK 105


>gi|238757595|ref|ZP_04618779.1| ATP-dependent Clp protease adapter protein clpS [Yersinia aldovae
           ATCC 35236]
 gi|238704100|gb|EEP96633.1| ATP-dependent Clp protease adapter protein clpS [Yersinia aldovae
           ATCC 35236]
          Length = 106

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
           N      F++ +    ++   ++ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A  
Sbjct: 3   NNNDWLNFEHLVKD--KYKEALKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQ 60

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +ML VH+QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 61  LMLNVHYQGKAICGVFTAEVAETKVAHVNQYARENEHPLLCTLEK 105


>gi|253999942|ref|YP_003052005.1| ATP-dependent Clp protease adaptor protein ClpS [Methylovorus sp.
           SIP3-4]
 gi|253986621|gb|ACT51478.1| ATP-dependent Clp protease adaptor protein ClpS [Methylovorus sp.
           SIP3-4]
          Length = 103

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 49/90 (54%), Positives = 70/90 (77%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            + +++ + P +Y+V+L+ND+YTPMEFV+ V+Q FF K  E A  IMLKVH +G G CGV
Sbjct: 13  EKQTARPKPPSMYKVILLNDDYTPMEFVVEVIQRFFNKSREQATQIMLKVHTEGAGICGV 72

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           Y ++IAE KVNQV+ Y+R++Q+PLQC ME+
Sbjct: 73  YPHDIAETKVNQVLGYAREYQHPLQCAMEE 102


>gi|21242744|ref|NP_642326.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|84624070|ref|YP_451442.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas oryzae
           pv. oryzae MAFF 311018]
 gi|289666027|ref|ZP_06487608.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
           campestris pv. vasculorum NCPPB702]
 gi|289670485|ref|ZP_06491560.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
           campestris pv. musacearum NCPPB4381]
 gi|294625258|ref|ZP_06703897.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|294666594|ref|ZP_06731833.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
 gi|24638421|sp|Q8PL06|CLPS_XANAC RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|67460158|sp|Q5GZR3|CLPS_XANOR RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|123521875|sp|Q2P2Q9|CLPS_XANOM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|21108222|gb|AAM36862.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|84368010|dbj|BAE69168.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|292600432|gb|EFF44530.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292603614|gb|EFF47026.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 106

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 52/106 (49%), Positives = 68/106 (64%), Gaps = 1/106 (0%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
           M +    E D+ L  E     +V  P  Y+VLL+ND+YTPM+FV+ VL+ FF  + E A 
Sbjct: 1   MPRNTSHEHDHGLMVE-ASKPEVAPPPRYQVLLLNDDYTPMDFVVTVLEQFFNLNLEQAT 59

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            IML VH +G G CGVY+ E+AE KV QV  +SR +Q+PL C MEQ
Sbjct: 60  QIMLHVHTRGRGVCGVYSREVAESKVAQVNEFSRMNQHPLLCTMEQ 105


>gi|325919554|ref|ZP_08181568.1| hypothetical protein XGA_0507 [Xanthomonas gardneri ATCC 19865]
 gi|325549963|gb|EGD20803.1| hypothetical protein XGA_0507 [Xanthomonas gardneri ATCC 19865]
          Length = 106

 Score =  161 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 51/106 (48%), Positives = 68/106 (64%), Gaps = 1/106 (0%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
           M +    E+D+ L  E     +V  P  Y+VLL+ND+YTPM+FV+ VL+ FF    E A 
Sbjct: 1   MPRNTTHEYDHGLMVE-ASKPEVAPPPRYQVLLLNDDYTPMDFVVTVLEQFFNLSLEQAT 59

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            +ML VH +G G CGVY+ E+AE KV QV  +SR +Q+PL C MEQ
Sbjct: 60  QVMLHVHTRGRGVCGVYSREVAESKVAQVNEFSRMNQHPLLCTMEQ 105


>gi|294140597|ref|YP_003556575.1| ATP-dependent Clp protease adaptor protein clpS [Shewanella
           violacea DSS12]
 gi|293327066|dbj|BAJ01797.1| ATP-dependent Clp protease adaptor protein clpS [Shewanella
           violacea DSS12]
          Length = 102

 Score =  161 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 46/101 (45%), Positives = 69/101 (68%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           + +  N    E R  S++  P +Y+V+L ND+YTPM+FVI +LQ FF K+ + A  IML 
Sbjct: 1   MGKVGNLEHVEERVESELMPPSMYKVVLNNDDYTPMDFVIEILQFFFKKNEQEATDIMLA 60

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +HHQG G CG++ + IAE KV QV  ++RQ+++PL C +E+
Sbjct: 61  IHHQGKGICGIFPFGIAETKVAQVNQFARQNEHPLLCSLEK 101


>gi|91793189|ref|YP_562840.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           denitrificans OS217]
 gi|122968755|sp|Q12N59|CLPS_SHEDO RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|91715191|gb|ABE55117.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           denitrificans OS217]
          Length = 102

 Score =  161 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 46/101 (45%), Positives = 67/101 (66%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           + +  +   ++ R  S++  P +Y+V+L ND+YTPM+FVI VL  FF K    A  IML 
Sbjct: 1   MGKTGSVEHTKQRIESELMPPSMYKVILNNDDYTPMDFVIEVLARFFDKHEPQATDIMLT 60

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +HHQG G CGVY + IAE KV QV  ++R++Q+PL C +E+
Sbjct: 61  IHHQGKGICGVYPFGIAETKVLQVNQFARENQHPLLCTLEK 101


>gi|227112014|ref|ZP_03825670.1| ATP-dependent Clp protease adaptor protein ClpS [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
 gi|253688098|ref|YP_003017288.1| ATP-dependent Clp protease adaptor protein ClpS [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|261821257|ref|YP_003259363.1| ATP-dependent Clp protease adaptor protein ClpS [Pectobacterium
           wasabiae WPP163]
 gi|259491248|sp|C6DF43|CLPS_PECCP RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|251754676|gb|ACT12752.1| ATP-dependent Clp protease adaptor protein ClpS [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|261605270|gb|ACX87756.1| ATP-dependent Clp protease adaptor protein ClpS [Pectobacterium
           wasabiae WPP163]
          Length = 106

 Score =  161 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 47/105 (44%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
           N    ++ +N   +  +   K++ P +Y V+L ND+YTPMEFVI VLQ FF  D E A  
Sbjct: 3   NNSTWSQSENL--TADKQKEKLQPPSMYNVVLNNDDYTPMEFVIDVLQKFFSYDIERATQ 60

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +ML VH+QG   CGV++ E+AE KV QV  Y+R++++PL C +E+
Sbjct: 61  LMLTVHYQGKAICGVFSAEVAETKVVQVNRYARENEHPLLCTLEK 105


>gi|146307417|ref|YP_001187882.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           mendocina ymp]
 gi|166214739|sp|A4XUY4|CLPS_PSEMY RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|145575618|gb|ABP85150.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           mendocina ymp]
          Length = 120

 Score =  161 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 43/106 (40%), Positives = 63/106 (59%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
            +     E D+   +       ++ P +Y+V+L ND+YTPM+FV+ VL+ FF  + E A 
Sbjct: 13  QDHPAEHEDDSSGIAVQESKPALQAPPMYKVVLFNDDYTPMDFVVEVLETFFGMNRELAT 72

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            IML VH +G   CGVY  +IAE K  QV  Y+R+ Q+PL C +E+
Sbjct: 73  KIMLTVHTEGRAVCGVYTRDIAETKAMQVNQYARESQHPLLCEIEK 118


>gi|74317254|ref|YP_314994.1| ATP-dependent Clp protease adaptor protein ClpS [Thiobacillus
           denitrificans ATCC 25259]
 gi|74056749|gb|AAZ97189.1| ATP-dependent Clp protease adaptor protein ClpS [Thiobacillus
           denitrificans ATCC 25259]
          Length = 102

 Score =  161 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 52/86 (60%), Positives = 69/86 (80%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           +KV+ P LY+VLL+ND+YTPMEFV+HVL+ FF  D E A  IMLKVH +G+G CGV+  +
Sbjct: 16  AKVKPPPLYKVLLLNDDYTPMEFVVHVLRKFFGIDEERATQIMLKVHTEGVGVCGVFTRD 75

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           IA  KV QV++++RQHQ+PLQC ME+
Sbjct: 76  IAHTKVEQVVDFARQHQHPLQCTMEE 101


>gi|262041017|ref|ZP_06014237.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259041633|gb|EEW42684.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 105

 Score =  160 bits (406), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 49/106 (46%), Positives = 73/106 (68%), Gaps = 2/106 (1%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
           M+K+   +F++ +D EVR    ++ P +Y+V+ VND+YTPMEFVI VLQ FF  D E A 
Sbjct: 1   MSKRDWLDFEHLVDDEVR--DAIKPPSMYKVIFVNDDYTPMEFVIDVLQKFFSYDVERAT 58

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            +ML VH++G   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 59  QLMLTVHYEGKAICGVFTAEVAETKVAMVNQYARENEHPLLCTLEK 104


>gi|227329247|ref|ZP_03833271.1| ATP-dependent Clp protease adaptor protein ClpS [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 106

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 47/105 (44%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
           N    ++ +N   +  +   K++ P +Y V+L ND+YTPMEFVI VLQ FF  D E A  
Sbjct: 3   NNSTWSQSENL--TTDKQKEKLQPPSMYNVVLNNDDYTPMEFVIDVLQKFFSYDIERATQ 60

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +ML VH+QG   CGV++ E+AE KV QV  Y+R++++PL C +E+
Sbjct: 61  LMLTVHYQGKAICGVFSAEVAETKVVQVNRYARENEHPLLCTLEK 105


>gi|67460271|sp|Q6FCI2|CLPS_ACIAD RecName: Full=ATP-dependent Clp protease adapter protein ClpS
          Length = 107

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 1/107 (0%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
           M      E +  +  +     +++ P LY V+L+ND+YTPM+FVI +LQ +F  + + A 
Sbjct: 1   MGDSQSDEPEGDIAVQT-APPELKRPPLYAVVLLNDDYTPMDFVIEILQQYFALNLDQAT 59

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            +ML VH++G G  GVY  +IAE K NQV NY+R   +PL C +E K
Sbjct: 60  QVMLTVHYEGKGVAGVYPRDIAETKANQVNNYARSQGHPLLCQIEPK 106


>gi|156934623|ref|YP_001438539.1| ATP-dependent Clp protease adaptor protein ClpS [Cronobacter
           sakazakii ATCC BAA-894]
 gi|260597283|ref|YP_003209854.1| ATP-dependent Clp protease adaptor protein ClpS [Cronobacter
           turicensis z3032]
 gi|166214735|sp|A7MEQ8|CLPS_ENTS8 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|156532877|gb|ABU77703.1| hypothetical protein ESA_02457 [Cronobacter sakazakii ATCC BAA-894]
 gi|260216460|emb|CBA29592.1| ATP-dependent Clp protease adapter protein clpS [Cronobacter
           turicensis z3032]
          Length = 106

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 47/107 (43%), Positives = 70/107 (65%), Gaps = 2/107 (1%)

Query: 31  RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
               K   +FD+  + ++R +  ++ P +Y+V+L+ND+YTPMEFVI VLQ FF  D E A
Sbjct: 1   MSKDKSWLDFDHLAEDDLREA--LKPPSMYKVILMNDDYTPMEFVIDVLQKFFSYDVERA 58

Query: 91  KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             +ML VH+QG   CGV+  E+AE KV  V  Y+R++ +PL C +E+
Sbjct: 59  TQLMLTVHYQGKAICGVFTAEVAETKVALVNKYARENDHPLLCTLEK 105


>gi|88798703|ref|ZP_01114286.1| substrate modulator for ClpAP, directs protease activity towards
           aggregated proteins [Reinekea sp. MED297]
 gi|88778466|gb|EAR09658.1| substrate modulator for ClpAP, directs protease activity towards
           aggregated proteins [Reinekea sp. MED297]
          Length = 113

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 47/107 (43%), Positives = 68/107 (63%), Gaps = 1/107 (0%)

Query: 32  MNKKGIAEFDNCLDSEVRF-SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
           M     +  +   D   +    +++ P LYRV+L+ND+YTPMEFV+H+L+ FF  + E A
Sbjct: 1   MGDDDQSSREGEGDVAFQTADPELKRPSLYRVVLLNDDYTPMEFVVHILEQFFAMNREKA 60

Query: 91  KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             +ML VH QG G CGVY  +IAE K   V +YSR++Q+PL C +E+
Sbjct: 61  TQVMLAVHTQGKGVCGVYTKDIAETKAALVNDYSRENQHPLLCEVEE 107


>gi|13470855|ref|NP_102424.1| ATP-dependent Clp protease adaptor protein ClpS [Mesorhizobium loti
           MAFF303099]
 gi|21542310|sp|Q98MA3|CLPS1_RHILO RecName: Full=ATP-dependent Clp protease adapter protein ClpS 1
 gi|14021598|dbj|BAB48210.1| mll0664 [Mesorhizobium loti MAFF303099]
          Length = 109

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 54/82 (65%), Positives = 71/82 (86%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           P LYRVL++ND+YTPMEFV+HVL+ FF KD E A  IML VH+ G+GECGVY +E+AE K
Sbjct: 28  PSLYRVLILNDDYTPMEFVVHVLERFFQKDREAATRIMLHVHNHGVGECGVYTFEVAETK 87

Query: 117 VNQVMNYSRQHQYPLQCIMEQK 138
           V+QVM+++RQ+Q+PLQC+ME+K
Sbjct: 88  VSQVMDFARQNQHPLQCVMEKK 109


>gi|238753481|ref|ZP_04614844.1| ATP-dependent Clp protease adapter protein clpS [Yersinia ruckeri
           ATCC 29473]
 gi|238708434|gb|EEQ00789.1| ATP-dependent Clp protease adapter protein clpS [Yersinia ruckeri
           ATCC 29473]
          Length = 106

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
           N      F++ +    +    ++ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A  
Sbjct: 3   NNNDWLNFEHLVKD--KQIDALKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQ 60

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +ML VH++G   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 61  LMLNVHYKGKAICGVFTAEVAETKVAHVNQYARENEHPLLCTLEK 105


>gi|153871083|ref|ZP_02000343.1| ATP-dependent Clp protease adaptor protein ClpS [Beggiatoa sp. PS]
 gi|152072449|gb|EDN69655.1| ATP-dependent Clp protease adaptor protein ClpS [Beggiatoa sp. PS]
          Length = 106

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 47/91 (51%), Positives = 69/91 (75%)

Query: 47  EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
           E    SK++ P +Y+V+L+ND+YTPM+FV+H+L+ FF  + + A  IML+VH +G G CG
Sbjct: 15  EEEQKSKLKRPPMYKVILLNDDYTPMDFVVHILEIFFGMEKDLATHIMLQVHTKGKGICG 74

Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            Y+ EIAE KV QV NY+R++Q+PL CI+E+
Sbjct: 75  TYSREIAETKVAQVNNYARENQHPLLCILEK 105


>gi|99082374|ref|YP_614528.1| ATP-dependent Clp protease adaptor protein ClpS [Ruegeria sp.
           TM1040]
 gi|122397582|sp|Q1GDK0|CLPS_SILST RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|99038654|gb|ABF65266.1| ATP-dependent Clp protease adaptor protein ClpS [Ruegeria sp.
           TM1040]
          Length = 113

 Score =  160 bits (405), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 51/117 (43%), Positives = 77/117 (65%), Gaps = 7/117 (5%)

Query: 21  LMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQ 80
           LM  + M+D+        + ++ L    +   + + P  Y+VLL+ND+YTPMEFV+ VL+
Sbjct: 2   LMQPLMMSDN-------PDDESDLGLLTKTRPRTQRPPRYKVLLLNDDYTPMEFVVIVLE 54

Query: 81  NFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            FF  +H  A  IML VH +G+   GV+++E+AE KV QVM+Y+R+HQ+PLQC ME+
Sbjct: 55  RFFGLNHAQAFEIMLTVHKKGLAVVGVFSHEVAETKVAQVMDYARRHQHPLQCTMEK 111


>gi|84685218|ref|ZP_01013117.1| ATP-dependent Clp protease adaptor protein clpS [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84666950|gb|EAQ13421.1| ATP-dependent Clp protease adaptor protein clpS [Rhodobacterales
           bacterium HTCC2654]
          Length = 118

 Score =  160 bits (405), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 55/112 (49%), Positives = 73/112 (65%), Gaps = 5/112 (4%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           MAD      G           VR  +K + P LY+VLL+ND++TPMEFV+ VL+ FF  +
Sbjct: 12  MADEPNGPPG-----GDTQLAVRPKAKSKRPPLYKVLLINDDFTPMEFVVMVLERFFSMN 66

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           H  A  IML VH +G+   GV++YEIAE KVNQVM  +RQ+Q+PLQC ME++
Sbjct: 67  HAQAFEIMLTVHKKGLAVVGVFSYEIAETKVNQVMEMARQYQHPLQCTMERE 118


>gi|71908707|ref|YP_286294.1| ATP-dependent Clp protease adaptor protein ClpS [Dechloromonas
           aromatica RCB]
 gi|123626787|sp|Q47BF7|CLPS_DECAR RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|71848328|gb|AAZ47824.1| ATP-dependent Clp protease adaptor protein ClpS [Dechloromonas
           aromatica RCB]
          Length = 102

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 50/88 (56%), Positives = 66/88 (75%)

Query: 50  FSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYA 109
             S++  PK+Y+V+L+ND+YTPM+FVI VLQ FF  D E A  IMLKVH++G G CGV+ 
Sbjct: 14  QRSRLGPPKMYKVVLLNDDYTPMDFVITVLQRFFSLDTEQATRIMLKVHNEGRGVCGVFP 73

Query: 110 YEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            +IA  KV QV  ++RQHQ+PL CIME+
Sbjct: 74  RDIAATKVEQVSAFARQHQHPLACIMEE 101


>gi|119775192|ref|YP_927932.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           amazonensis SB2B]
 gi|166214742|sp|A1S7A6|CLPS_SHEAM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|119767692|gb|ABM00263.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
          Length = 102

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 45/101 (44%), Positives = 67/101 (66%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           +A+  N      R  +++  P +Y+V+L ND+YTPM+FV+ VLQ FF  +   A  IML+
Sbjct: 1   MAKAGNIERVVERADTELMPPSMYKVILNNDDYTPMDFVVEVLQLFFKMNEHQATEIMLQ 60

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +HHQG   CGV+ + IAE KV QV  ++RQ+Q+PL C +E+
Sbjct: 61  IHHQGKAVCGVFPFGIAETKVAQVNQFARQNQHPLLCSLEK 101


>gi|326388617|ref|ZP_08210210.1| ATP-dependent Clp protease adaptor protein ClpS [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206868|gb|EGD57692.1| ATP-dependent Clp protease adaptor protein ClpS [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 118

 Score =  159 bits (404), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 46/90 (51%), Positives = 71/90 (78%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
           +   ++ + P ++RVL++ND+YTPMEFV+ VL+ FF+ D E A  +ML VH +G+G CGV
Sbjct: 28  IATRARPKKPSMFRVLMLNDDYTPMEFVVMVLKRFFHMDLEQATRVMLHVHQRGVGVCGV 87

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           + YEIAE KVNQVM++++Q+Q+PL+C +E+
Sbjct: 88  FPYEIAETKVNQVMDFAKQNQHPLRCTLEK 117


>gi|238897684|ref|YP_002923363.1| regulatory protein for ClpA substrate specificity [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465441|gb|ACQ67215.1| regulatory protein for ClpA substrate specificity [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 105

 Score =  159 bits (404), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 49/106 (46%), Positives = 71/106 (66%), Gaps = 2/106 (1%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
           MNK G   F++ L+ +    S V+ P +Y+V+L ND+YTPMEFV+ VLQNFF  + E A 
Sbjct: 1   MNKNGGLNFEHLLNEQ--EISAVKPPDMYKVILNNDDYTPMEFVVDVLQNFFSYNLEQAT 58

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            +MLKVH+QG   CG +  E+AE KV  V  Y+R++++P  C +E+
Sbjct: 59  ALMLKVHYQGKAICGTFTAEVAETKVASVNQYARENEHPFLCTLEK 104


>gi|296446322|ref|ZP_06888268.1| ATP-dependent Clp protease adaptor protein ClpS [Methylosinus
           trichosporium OB3b]
 gi|296256223|gb|EFH03304.1| ATP-dependent Clp protease adaptor protein ClpS [Methylosinus
           trichosporium OB3b]
          Length = 141

 Score =  159 bits (404), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 61/127 (48%), Positives = 79/127 (62%)

Query: 12  RVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTP 71
           RV R G     +    A     K G  +         R  ++ R P +YRVLL+ND+YT 
Sbjct: 15  RVTRRGAPPRAAGRTRASKEPRKSGGGDGGAGTALITRTRTQTRRPNMYRVLLLNDDYTT 74

Query: 72  MEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPL 131
            EFV+ VL+ +F K  E A  IML VH+ G+GECGVY YE+AE KV QVM+Y+R+HQ+PL
Sbjct: 75  QEFVVIVLRKYFNKSLEEATRIMLHVHNHGVGECGVYTYEVAETKVTQVMDYARKHQHPL 134

Query: 132 QCIMEQK 138
           QCIME+K
Sbjct: 135 QCIMEKK 141


>gi|53804154|ref|YP_114226.1| ATP-dependent Clp protease adaptor protein ClpS [Methylococcus
           capsulatus str. Bath]
 gi|67460232|sp|Q607H2|CLPS_METCA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|53757915|gb|AAU92206.1| ATP-dependent Clp protease adaptor protein ClpS [Methylococcus
           capsulatus str. Bath]
          Length = 106

 Score =  159 bits (404), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 45/89 (50%), Positives = 65/89 (73%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
               KV+ P LY+V+L+ND++TPMEFV+HVL  FF  + E A  +ML VH +G+G CGV+
Sbjct: 17  EAQPKVKRPPLYKVMLLNDDFTPMEFVVHVLMLFFGMNEEKATQVMLHVHTRGVGVCGVF 76

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           + ++AE KV QV  ++RQ+Q+PL C ME+
Sbjct: 77  SKDVAETKVQQVNAHARQNQHPLLCTMEE 105


>gi|114563426|ref|YP_750939.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           frigidimarina NCIMB 400]
 gi|122299542|sp|Q081G4|CLPS_SHEFN RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|114334719|gb|ABI72101.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
           frigidimarina NCIMB 400]
          Length = 102

 Score =  159 bits (404), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 46/101 (45%), Positives = 71/101 (70%)

Query: 37  IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
           +A+  N    E +  S+++ P +Y+V+L ND+YTPM+FV+ VLQ FF K+ + A  IML 
Sbjct: 1   MAKLGNVEHIEEKVESELQPPHMYKVVLNNDDYTPMDFVVEVLQRFFEKNEQQAVDIMLA 60

Query: 97  VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +H+QG G CGV+ + IAE KV QV  ++R++Q+PL C +E+
Sbjct: 61  IHNQGKGLCGVFPFGIAETKVFQVNQFARENQHPLLCTLEK 101


>gi|218673814|ref|ZP_03523483.1| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium etli
           GR56]
          Length = 86

 Score =  159 bits (404), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 56/86 (65%), Positives = 74/86 (86%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
           K + P LYRVLL+ND+YTPMEFVIH+L+ FF KD E+A  IML VH+ G+GECG++ YE+
Sbjct: 1   KTKKPNLYRVLLLNDDYTPMEFVIHILERFFQKDRESATRIMLHVHNHGVGECGIFTYEV 60

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQK 138
           AE KV+QVM+++RQHQ+PLQC+ME+K
Sbjct: 61  AETKVSQVMDFARQHQHPLQCVMEKK 86


>gi|85713420|ref|ZP_01044415.1| ATP-dependent Clp protease adaptor protein ClpS [Idiomarina baltica
           OS145]
 gi|85692756|gb|EAQ30759.1| ATP-dependent Clp protease adaptor protein ClpS [Idiomarina baltica
           OS145]
          Length = 104

 Score =  159 bits (404), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 46/100 (46%), Positives = 67/100 (67%)

Query: 39  EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
           +  +  D E     +++ P +Y+V+L ND+YTPM+FVI VL  FF  ++E A   ML+VH
Sbjct: 5   DHQHVYDVEEESKHELKPPSMYKVILNNDDYTPMDFVIEVLIRFFRMNNERATDTMLQVH 64

Query: 99  HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           ++G   CGVY+ EIAE KV QV  Y+R++Q+PL C ME +
Sbjct: 65  YKGKAVCGVYSAEIAETKVVQVNQYARENQHPLLCTMEHE 104


>gi|197284584|ref|YP_002150456.1| ATP-dependent Clp protease adaptor protein [Proteus mirabilis
           HI4320]
 gi|227356766|ref|ZP_03841151.1| ATP-dependent Clp protease adaptor protein [Proteus mirabilis ATCC
           29906]
 gi|194682071|emb|CAR41609.1| ATP-dependent Clp protease adaptor protein [Proteus mirabilis
           HI4320]
 gi|227163056|gb|EEI47991.1| ATP-dependent Clp protease adaptor protein [Proteus mirabilis ATCC
           29906]
          Length = 104

 Score =  159 bits (404), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 65/102 (63%)

Query: 36  GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
           G  +F        + S     P +Y+V+L ND+YTPM+FV+ VL  +F+ + E A  IML
Sbjct: 2   GQFDFLTETTLGEKVSQLNEPPAMYKVILNNDDYTPMDFVVEVLTMYFFLNEEKATQIML 61

Query: 96  KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            VHH+G G CGVY+ +IAE KV QV  Y+R++ +PL C +E+
Sbjct: 62  DVHHKGKGVCGVYSADIAETKVAQVNQYARENGHPLLCTLEK 103


>gi|330503290|ref|YP_004380159.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           mendocina NK-01]
 gi|328917576|gb|AEB58407.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
           mendocina NK-01]
          Length = 120

 Score =  159 bits (404), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 43/106 (40%), Positives = 63/106 (59%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
            +     E D+   +       ++ P +Y+V+L ND+YTPM+FV+ VL+ FF  + E A 
Sbjct: 13  QDHPAEHEDDSSGIAVQESKPALQAPPMYKVVLFNDDYTPMDFVVEVLETFFGMNRELAT 72

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            IML VH +G   CGVY  +IAE K  QV  Y+R+ Q+PL C +E+
Sbjct: 73  KIMLAVHTEGRAVCGVYTRDIAETKAMQVNQYARESQHPLLCEIEK 118


>gi|255264828|ref|ZP_05344170.1| ATP-dependent Clp protease adaptor protein ClpS [Thalassiobium sp.
           R2A62]
 gi|255107163|gb|EET49837.1| ATP-dependent Clp protease adaptor protein ClpS [Thalassiobium sp.
           R2A62]
          Length = 113

 Score =  159 bits (404), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 49/113 (43%), Positives = 73/113 (64%)

Query: 26  FMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK 85
              D  M        D+ +   V    K + P LY+V+++ND+YTPMEFV+ VL+ FF  
Sbjct: 1   MRVDQIMMADDPGGDDSDVGLAVETRPKTKRPPLYKVMILNDDYTPMEFVVMVLERFFGM 60

Query: 86  DHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           +H  +  +ML VH +G+   GV++YEIAE KV QVM++++QHQ+PLQC ME++
Sbjct: 61  NHAQSFELMLTVHKKGLAVVGVFSYEIAETKVAQVMDFAQQHQHPLQCTMEKE 113


>gi|308186236|ref|YP_003930367.1| ATP-dependent Clp protease adaptor protein [Pantoea vagans C9-1]
 gi|308056746|gb|ADO08918.1| ATP-dependent Clp protease adaptor protein [Pantoea vagans C9-1]
          Length = 126

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 47/109 (43%), Positives = 70/109 (64%), Gaps = 2/109 (1%)

Query: 29  DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
           ++  N      F++  + +VR    ++ P +Y+V+L ND+YTPMEFVI V+Q FF  D E
Sbjct: 19  NTMANTNDWLNFEHLAEDKVREG--LKPPSMYKVILNNDDYTPMEFVIDVVQKFFSYDVE 76

Query: 89  TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            A  +MLKVH+ G   CGV+  E+AE K  QV NY+R++ +PL C +E+
Sbjct: 77  RATQLMLKVHYHGKAICGVFTAEVAETKAAQVNNYARENHHPLLCTLEK 125


>gi|163737216|ref|ZP_02144634.1| ATP-dependent Clp protease adaptor protein ClpS [Phaeobacter
           gallaeciensis BS107]
 gi|163740373|ref|ZP_02147767.1| ATP-dependent Clp protease, adaptor protein ClpS [Phaeobacter
           gallaeciensis 2.10]
 gi|161386231|gb|EDQ10606.1| ATP-dependent Clp protease, adaptor protein ClpS [Phaeobacter
           gallaeciensis 2.10]
 gi|161389820|gb|EDQ14171.1| ATP-dependent Clp protease adaptor protein ClpS [Phaeobacter
           gallaeciensis BS107]
          Length = 113

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 48/112 (42%), Positives = 72/112 (64%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           M  + +     ++ D  L    +   K + P  Y+VLL+ND+YTPMEFV+ VL+ FF   
Sbjct: 1   MLPTPVMMSDHSDDDTDLGVLTKTRPKTQRPPRYKVLLLNDDYTPMEFVVMVLERFFNMT 60

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           H  A  +ML VH +G+   GV+++EIAE KV QVM+++ +HQ+PLQC ME++
Sbjct: 61  HAEAFEVMLTVHKKGVAVVGVFSHEIAETKVGQVMDFAHRHQHPLQCTMEKE 112


>gi|307946408|ref|ZP_07661743.1| ATP-dependent Clp protease adaptor protein ClpS [Roseibium sp.
           TrichSKD4]
 gi|307770072|gb|EFO29298.1| ATP-dependent Clp protease adaptor protein ClpS [Roseibium sp.
           TrichSKD4]
          Length = 110

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 57/91 (62%), Positives = 75/91 (82%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R   K + P LYRVLL+ND+YTPMEFVIHV+++FF K+ E A  IML VHH G+GECG+
Sbjct: 20  TRTKPKTKRPNLYRVLLLNDDYTPMEFVIHVVESFFQKNREEATHIMLHVHHHGVGECGI 79

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           Y+YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 80  YSYEVAETKVTQVMDFARKHQHPLQCVMEKK 110


>gi|158522493|ref|YP_001530363.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfococcus
           oleovorans Hxd3]
 gi|158511319|gb|ABW68286.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfococcus
           oleovorans Hxd3]
          Length = 104

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 44/90 (48%), Positives = 64/90 (71%)

Query: 49  RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
           +  ++V+ P LY+VLL ND+YT MEFV+ +L++ F K  E A  IML VH  G+G CG++
Sbjct: 15  KTGTRVKPPSLYKVLLHNDDYTTMEFVVEILRHIFRKSLEDATTIMLNVHRNGVGCCGLF 74

Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            YEIAE K++ V  Y+R+  +PLQC ME++
Sbjct: 75  TYEIAETKIDLVHGYARERGFPLQCSMERE 104


>gi|153864221|ref|ZP_01997190.1| ATP-dependent Clp protease adaptor protein ClpS [Beggiatoa sp. SS]
 gi|152146285|gb|EDN72811.1| ATP-dependent Clp protease adaptor protein ClpS [Beggiatoa sp. SS]
          Length = 106

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 47/106 (44%), Positives = 72/106 (67%), Gaps = 1/106 (0%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
           M +     +D+ +  E     K++ P LY+V+L+ND+YTPM+FV+HVL+NFF  + + A 
Sbjct: 1   MAQLADPMYDDDVVVE-ETKPKLKRPPLYKVVLLNDDYTPMDFVVHVLENFFGMNQDLAN 59

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            +ML+VH +G G CG Y  ++AE KV QV  Y+R++Q+PL C ME+
Sbjct: 60  HVMLQVHLEGKGICGTYTRDVAETKVTQVNTYARENQHPLLCTMEK 105


>gi|262370290|ref|ZP_06063616.1| substrate modulator for ClpAP [Acinetobacter johnsonii SH046]
 gi|262314632|gb|EEY95673.1| substrate modulator for ClpAP [Acinetobacter johnsonii SH046]
          Length = 138

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 45/108 (41%), Positives = 67/108 (62%)

Query: 31  RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
           R++     E +N   +      +++ P LY V+L+ND+YTPM+FVI +LQ +F  + + A
Sbjct: 30  RLSNDEPNEEENGDVAVQTAPPELKRPPLYAVVLMNDDYTPMDFVIEILQQYFALNLDQA 89

Query: 91  KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
             +ML VH++G G  GVY  +IAE K NQV NY+R   +PL C +E K
Sbjct: 90  TQVMLTVHYEGKGVAGVYPRDIAETKANQVNNYARSQGHPLLCQIEPK 137


>gi|238784507|ref|ZP_04628515.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
           bercovieri ATCC 43970]
 gi|238795830|ref|ZP_04639343.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
           mollaretii ATCC 43969]
 gi|238714570|gb|EEQ06574.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
           bercovieri ATCC 43970]
 gi|238720293|gb|EEQ12096.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
           mollaretii ATCC 43969]
          Length = 106

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 44/105 (41%), Positives = 65/105 (61%), Gaps = 2/105 (1%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
                  F++ +    +    ++ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A  
Sbjct: 3   KNNDWLNFEHLVKD--KQKEALKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQ 60

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +ML VH+QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 61  LMLNVHYQGKAICGVFTAEVAETKVAHVNQYARENEHPLLCTLEK 105


>gi|271500837|ref|YP_003333862.1| ATP-dependent Clp protease adaptor protein ClpS [Dickeya dadantii
           Ech586]
 gi|270344392|gb|ACZ77157.1| ATP-dependent Clp protease adaptor protein ClpS [Dickeya dadantii
           Ech586]
          Length = 106

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 45/98 (45%), Positives = 66/98 (67%)

Query: 40  FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
                 ++  ++  ++ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A  +ML VH+
Sbjct: 8   PQTDDLTKEHYTEALQPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQLMLTVHY 67

Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           QG   CGVY+ E+AE KV QV  Y+R++++PL C +E+
Sbjct: 68  QGKAICGVYSAEVAETKVAQVNRYARENEHPLLCTLEK 105


>gi|228311827|pdb|2W9R|A Chain A, Structural Basis Of N-End Rule Substrate Recognition In
           Escherichia Coli By The Clpap Adaptor Protein Clps
 gi|228311836|pdb|2WA9|A Chain A, Structural Basis Of N-End Rule Substrate Recognition In
           Escherichia Coli By The Clpap Adaptor Protein Clps - Trp
           Peptide Structure
 gi|228311837|pdb|2WA9|B Chain B, Structural Basis Of N-End Rule Substrate Recognition In
           Escherichia Coli By The Clpap Adaptor Protein Clps - Trp
           Peptide Structure
 gi|228311838|pdb|2WA9|C Chain C, Structural Basis Of N-End Rule Substrate Recognition In
           Escherichia Coli By The Clpap Adaptor Protein Clps - Trp
           Peptide Structure
 gi|228311839|pdb|2WA9|D Chain D, Structural Basis Of N-End Rule Substrate Recognition In
           Escherichia Coli By The Clpap Adaptor Protein Clps - Trp
           Peptide Structure
 gi|228311840|pdb|2WA9|E Chain E, Structural Basis Of N-End Rule Substrate Recognition In
           Escherichia Coli By The Clpap Adaptor Protein Clps - Trp
           Peptide Structure
 gi|228311841|pdb|2WA9|F Chain F, Structural Basis Of N-End Rule Substrate Recognition In
           Escherichia Coli By The Clpap Adaptor Protein Clps - Trp
           Peptide Structure
 gi|228311842|pdb|2WA9|G Chain G, Structural Basis Of N-End Rule Substrate Recognition In
           Escherichia Coli By The Clpap Adaptor Protein Clps - Trp
           Peptide Structure
          Length = 108

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
                 +FD   + +VR +  ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A  
Sbjct: 3   KTNDWLDFDQLAEEKVRDA--LKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQ 60

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +ML VH+QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 61  LMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105


>gi|21231414|ref|NP_637331.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66768532|ref|YP_243294.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|24638420|sp|Q8P999|CLPS_XANCP RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|81305496|sp|Q4UUJ9|CLPS_XANC8 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|21113082|gb|AAM41255.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573864|gb|AAY49274.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 106

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 53/106 (50%), Positives = 69/106 (65%), Gaps = 1/106 (0%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
           M +K   E D+ L  E     +V  P  Y+VLL+ND+YTPM+FV+ VLQ FF  + E A 
Sbjct: 1   MPRKTSHEHDHGLVVET-SKPEVAPPPRYQVLLLNDDYTPMDFVVTVLQQFFNLELERAT 59

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            +ML VH +G G CGVY+ E+AE KV QV  +SR +Q+PL C MEQ
Sbjct: 60  QVMLHVHTRGRGVCGVYSREVAESKVAQVNEFSRMNQHPLLCTMEQ 105


>gi|90415922|ref|ZP_01223855.1| hypothetical protein GB2207_01777 [marine gamma proteobacterium
           HTCC2207]
 gi|90332296|gb|EAS47493.1| hypothetical protein GB2207_01777 [marine gamma proteobacterium
           HTCC2207]
          Length = 114

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 43/111 (38%), Positives = 68/111 (61%), Gaps = 3/111 (2%)

Query: 27  MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
           M++ +       + +  +++E     K++ P +++V+L+ND+YTPMEFV+ +L+ FF K 
Sbjct: 1   MSNDKNPPAWQHDGNTVVETE---RPKLKKPSMFKVVLLNDDYTPMEFVVELLEKFFSKT 57

Query: 87  HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
            E A  IML +H  G G CG+Y  ++AE K   V  YSR HQ+PL C +E 
Sbjct: 58  RENATRIMLSIHTDGKGVCGIYTKDVAETKAGTVNQYSRDHQHPLLCEVEP 108


>gi|161503926|ref|YP_001571038.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|189082476|sp|A9MI06|CLPS_SALAR RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|160865273|gb|ABX21896.1| hypothetical protein SARI_02017 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 106

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 47/105 (44%), Positives = 70/105 (66%), Gaps = 2/105 (1%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
                 +FD  ++ ++R +  ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A  
Sbjct: 3   KTNDWLDFDQLVEDDLRDA--LKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQ 60

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +ML VH+QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 61  LMLAVHYQGKAICGVFTAEVAETKVEMVNQYARENEHPLLCTLEK 105


>gi|157146439|ref|YP_001453758.1| ATP-dependent Clp protease adaptor protein ClpS [Citrobacter koseri
           ATCC BAA-895]
 gi|166214733|sp|A8AIK9|CLPS_CITK8 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|157083644|gb|ABV13322.1| hypothetical protein CKO_02199 [Citrobacter koseri ATCC BAA-895]
          Length = 106

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
                 +FD   + +VR +  ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A  
Sbjct: 3   KTNDWLDFDQLAEDKVRDA--LKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQ 60

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +ML VH+QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 61  LMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105


>gi|16759817|ref|NP_455434.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|16764306|ref|NP_459921.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|29142410|ref|NP_805752.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|56414003|ref|YP_151078.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|62179469|ref|YP_215886.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161614825|ref|YP_001588790.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167550381|ref|ZP_02344138.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|167992164|ref|ZP_02573262.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168230818|ref|ZP_02655876.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168236855|ref|ZP_02661913.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168240792|ref|ZP_02665724.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168263570|ref|ZP_02685543.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168466528|ref|ZP_02700390.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168819925|ref|ZP_02831925.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194444791|ref|YP_002040145.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194450386|ref|YP_002044938.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194470024|ref|ZP_03076008.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194734739|ref|YP_002114001.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197247594|ref|YP_002145862.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197264687|ref|ZP_03164761.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197362926|ref|YP_002142563.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|198243258|ref|YP_002214872.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|204929828|ref|ZP_03220849.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|207856339|ref|YP_002242990.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|213021515|ref|ZP_03335962.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
 gi|213052429|ref|ZP_03345307.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213419934|ref|ZP_03353000.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
 gi|213428022|ref|ZP_03360772.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhi str. E02-1180]
 gi|213581370|ref|ZP_03363196.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
 gi|213620715|ref|ZP_03373498.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
 gi|213649852|ref|ZP_03379905.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|213865354|ref|ZP_03387473.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
 gi|224582756|ref|YP_002636554.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|238913424|ref|ZP_04657261.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|289825000|ref|ZP_06544363.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|54036861|sp|P67650|CLPS_SALTI RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|54041058|sp|P67649|CLPS_SALTY RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|67460139|sp|Q57R56|CLPS_SALCH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|67460197|sp|Q5PGK0|CLPS_SALPA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|189082477|sp|A9N7Z5|CLPS_SALPB RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238689929|sp|B5BBT0|CLPS_SALPK RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238690018|sp|B5F127|CLPS_SALA4 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238690349|sp|B5FQ21|CLPS_SALDC RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238690424|sp|B5QYM8|CLPS_SALEP RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238690613|sp|B4TD06|CLPS_SALHS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238693573|sp|B4T0G6|CLPS_SALNS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238693662|sp|B4TRR1|CLPS_SALSV RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|254763823|sp|C0PXR3|CLPS_SALPC RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|25321103|pir||AH0609 conserved hypothetical protein STY0942 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16419456|gb|AAL19880.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16502110|emb|CAD05346.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29138040|gb|AAO69601.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56128260|gb|AAV77766.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62127102|gb|AAX64805.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161364189|gb|ABX67957.1| hypothetical protein SPAB_02578 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403454|gb|ACF63676.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194408690|gb|ACF68909.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194456388|gb|EDX45227.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194710241|gb|ACF89462.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195630880|gb|EDX49466.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197094403|emb|CAR59919.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197211297|gb|ACH48694.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197242942|gb|EDY25562.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197290191|gb|EDY29548.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197937774|gb|ACH75107.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|204320822|gb|EDZ06023.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205324512|gb|EDZ12351.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205329607|gb|EDZ16371.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205334903|gb|EDZ21667.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205340436|gb|EDZ27200.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205343076|gb|EDZ29840.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205347686|gb|EDZ34317.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|206708142|emb|CAR32435.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467283|gb|ACN45113.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|261246161|emb|CBG23965.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267992673|gb|ACY87558.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301157489|emb|CBW16979.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312911934|dbj|BAJ35908.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|320085181|emb|CBY94968.1| ATP-dependent Clp protease adapter protein clpS [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321223269|gb|EFX48338.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322616381|gb|EFY13290.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322619631|gb|EFY16506.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322622673|gb|EFY19518.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322628586|gb|EFY25373.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322631522|gb|EFY28278.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322637049|gb|EFY33752.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322641753|gb|EFY38389.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322644455|gb|EFY40995.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649575|gb|EFY46006.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322654123|gb|EFY50446.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658038|gb|EFY54305.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322663512|gb|EFY59714.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322670248|gb|EFY66388.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322671484|gb|EFY67606.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322676840|gb|EFY72907.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322682765|gb|EFY78784.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322686444|gb|EFY82426.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|322713939|gb|EFZ05510.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
 gi|323129211|gb|ADX16641.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|323196102|gb|EFZ81265.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323196752|gb|EFZ81896.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323202968|gb|EFZ88002.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323209009|gb|EFZ93946.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323211914|gb|EFZ96742.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323215154|gb|EFZ99899.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323222357|gb|EGA06735.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323226878|gb|EGA11061.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323229832|gb|EGA13955.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323233057|gb|EGA17153.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323240792|gb|EGA24834.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323243109|gb|EGA27129.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323247430|gb|EGA31386.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323251652|gb|EGA35519.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323257360|gb|EGA41058.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323261949|gb|EGA45515.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323267964|gb|EGA51443.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323271969|gb|EGA55384.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
 gi|326622625|gb|EGE28970.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 106

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
                 +FD  ++  VR +  ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A  
Sbjct: 3   KTNDWLDFDQLVEDSVRDA--LKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQ 60

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +ML VH+QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 61  LMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105


>gi|283832492|ref|ZP_06352233.1| ATP-dependent Clp protease adaptor protein ClpS [Citrobacter
           youngae ATCC 29220]
 gi|291072152|gb|EFE10261.1| ATP-dependent Clp protease adaptor protein ClpS [Citrobacter
           youngae ATCC 29220]
          Length = 106

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 47/107 (43%), Positives = 68/107 (63%), Gaps = 2/107 (1%)

Query: 31  RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
                   +FD  L +E +    ++ P +Y+V+L+ND+YTPMEFVI VLQ FF  D E A
Sbjct: 1   MSKTNDWLDFD--LLAEDKLRDALKPPSMYKVILINDDYTPMEFVIDVLQKFFSYDVERA 58

Query: 91  KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             +ML VH+QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 59  TQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105


>gi|237746972|ref|ZP_04577452.1| ATP-dependent Clp protease adaptor protein ClpS [Oxalobacter
           formigenes HOxBLS]
 gi|229378323|gb|EEO28414.1| ATP-dependent Clp protease adaptor protein ClpS [Oxalobacter
           formigenes HOxBLS]
          Length = 143

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 45/90 (50%), Positives = 66/90 (73%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
              ++ ++ P +YRVLL+ND++TPM+FVI VLQ +F+K+ E A  IMLKVH +G G CG+
Sbjct: 53  EETATVLKPPPMYRVLLLNDDFTPMDFVIFVLQEYFHKNAEMATRIMLKVHREGKGVCGI 112

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +  +IA  KV QV+ ++RQ  +PLQC ME+
Sbjct: 113 FPKDIANTKVEQVIRHARQEGHPLQCTMEE 142


>gi|259417778|ref|ZP_05741697.1| ATP-dependent Clp protease adaptor protein ClpS [Silicibacter sp.
           TrichCH4B]
 gi|259346684|gb|EEW58498.1| ATP-dependent Clp protease adaptor protein ClpS [Silicibacter sp.
           TrichCH4B]
          Length = 107

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 47/100 (47%), Positives = 70/100 (70%)

Query: 38  AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
            + ++ L    +   + + P  Y+VLL+ND+YTPMEFV+ VL+ FF  +H  A  IML V
Sbjct: 6   PDDESDLGVLTKTRPRTQRPPRYKVLLLNDDYTPMEFVVIVLERFFGLNHAQAFEIMLTV 65

Query: 98  HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           H +G+   GV+++E+AE KV QVM+Y+R+HQ+PLQC ME+
Sbjct: 66  HKKGLAVVGVFSHEVAETKVAQVMDYARRHQHPLQCTMEK 105


>gi|242239694|ref|YP_002987875.1| ATP-dependent Clp protease adaptor protein ClpS [Dickeya dadantii
           Ech703]
 gi|242131751|gb|ACS86053.1| ATP-dependent Clp protease adaptor protein ClpS [Dickeya dadantii
           Ech703]
          Length = 106

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 45/98 (45%), Positives = 64/98 (65%)

Query: 40  FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
                 ++      ++ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A  +ML VH+
Sbjct: 8   PQVEGQTKDLHEEALQPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQLMLTVHY 67

Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           QG   CGVY+ E+AE KV QV  Y+R++++PL C +E+
Sbjct: 68  QGKAICGVYSAEVAETKVAQVNRYARENEHPLLCTLEK 105


>gi|157369916|ref|YP_001477905.1| ATP-dependent Clp protease adaptor protein ClpS [Serratia
           proteamaculans 568]
 gi|270261165|ref|ZP_06189438.1| ATP-dependent Clp protease adapter protein ClpS [Serratia odorifera
           4Rx13]
 gi|293396848|ref|ZP_06641122.1| ATP-dependent Clp protease adaptor protein ClpS [Serratia odorifera
           DSM 4582]
 gi|167008656|sp|A8GCD7|CLPS_SERP5 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|157321680|gb|ABV40777.1| ATP-dependent Clp protease adaptor protein ClpS [Serratia
           proteamaculans 568]
 gi|270044649|gb|EFA17740.1| ATP-dependent Clp protease adapter protein ClpS [Serratia odorifera
           4Rx13]
 gi|291420319|gb|EFE93574.1| ATP-dependent Clp protease adaptor protein ClpS [Serratia odorifera
           DSM 4582]
          Length = 106

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 47/105 (44%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
           N      F++   +E +    V+ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A  
Sbjct: 3   NNNDWLNFEHL--AEEKQIDAVKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQ 60

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +ML VH+QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 61  LMLTVHYQGKAICGVFTAEVAETKVVHVNRYARENEHPLLCTLEK 105


>gi|90021331|ref|YP_527158.1| ATP-dependent Clp protease adaptor protein ClpS [Saccharophagus
           degradans 2-40]
 gi|89950931|gb|ABD80946.1| ATP-dependent Clp protease adaptor protein ClpS [Saccharophagus
           degradans 2-40]
          Length = 124

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 68/102 (66%), Gaps = 3/102 (2%)

Query: 38  AEFDNCLDSEVRF---SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
           ++ D   D  V       +++ P +Y+V+++ND+YTPMEFV+ VL+ FF  + E+A  IM
Sbjct: 15  SDEDTTFDGGVAVQAEKPRLKRPPMYKVVMLNDDYTPMEFVVEVLELFFSMNRESATRIM 74

Query: 95  LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
           L+VH +G   CGV++ ++AE K  QV  Y++Q+++PL C +E
Sbjct: 75  LRVHTEGKAVCGVFSRDVAETKAAQVNQYAKQNEHPLLCEIE 116


>gi|262372530|ref|ZP_06065809.1| substrate modulator for ClpAP [Acinetobacter junii SH205]
 gi|262312555|gb|EEY93640.1| substrate modulator for ClpAP [Acinetobacter junii SH205]
          Length = 136

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 46/123 (37%), Positives = 74/123 (60%), Gaps = 2/123 (1%)

Query: 18  ILALMSFIFMADSRMNKK-GIAEFDNCLDSEVRFSS-KVRVPKLYRVLLVNDNYTPMEFV 75
           + +      + D  +  +   +  D+  +  V+ +  +++ P LY V+L+ND+YTPM+FV
Sbjct: 13  VKSSFQQSGLIDWHLGPRLSDSHEDHEGEVVVQTAPPELKRPPLYAVVLLNDDYTPMDFV 72

Query: 76  IHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIM 135
           I +LQ++F  D + A  +ML VH++G G  GVY  +IAE K NQV NY+R   +PL C +
Sbjct: 73  IEILQSYFGMDFDQASQVMLTVHYEGKGTAGVYPRDIAETKANQVNNYARSQGHPLLCQI 132

Query: 136 EQK 138
           E K
Sbjct: 133 EPK 135


>gi|311280209|ref|YP_003942440.1| ATP-dependent Clp protease adaptor protein ClpS [Enterobacter
           cloacae SCF1]
 gi|308749404|gb|ADO49156.1| ATP-dependent Clp protease adaptor protein ClpS [Enterobacter
           cloacae SCF1]
          Length = 106

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 49/107 (45%), Positives = 69/107 (64%), Gaps = 2/107 (1%)

Query: 31  RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
               +   +FD     +VR +  ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A
Sbjct: 1   MSKTRDWLDFDQLTKDQVRDA--LKPPAMYKVILVNDDYTPMEFVIDVLQKFFSYDVERA 58

Query: 91  KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             +ML VH+QG   CGV+  E+AE KV  V  Y+R++++PL C +EQ
Sbjct: 59  TQLMLTVHYQGKAICGVFTAEVAETKVAMVNQYARENEHPLLCTLEQ 105


>gi|307130779|ref|YP_003882795.1| regulatory protein for ClpA substrate specificity [Dickeya dadantii
           3937]
 gi|306528308|gb|ADM98238.1| regulatory protein for ClpA substrate specificity [Dickeya dadantii
           3937]
          Length = 106

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 44/92 (47%), Positives = 64/92 (69%)

Query: 46  SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
           ++   +  ++ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A  +ML VH+ G   C
Sbjct: 14  TKEHNAEALQPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQLMLTVHYHGKAIC 73

Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           GVY+ E+AE KV QV  Y+R++++PL C +E+
Sbjct: 74  GVYSAEVAETKVAQVNRYARENEHPLLCTLEK 105


>gi|126740638|ref|ZP_01756325.1| ATP-dependent Clp protease, adaptor protein ClpS [Roseobacter sp.
           SK209-2-6]
 gi|126718439|gb|EBA15154.1| ATP-dependent Clp protease, adaptor protein ClpS [Roseobacter sp.
           SK209-2-6]
          Length = 121

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 48/113 (42%), Positives = 68/113 (60%)

Query: 26  FMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK 85
            M    +      + D       +   K + P  Y+VLL+ND+YTPMEFV+ VL+ FF  
Sbjct: 8   PMPLQPVMMSQYPDDDADTGVLTKTRPKTKRPPRYKVLLLNDDYTPMEFVVMVLERFFSM 67

Query: 86  DHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            H  A  IML VH +G+   GV+ +EIAE KV QVM+++ +HQ+PLQC ME++
Sbjct: 68  THAEAFDIMLTVHKKGLAVVGVFTHEIAETKVAQVMDFAGRHQHPLQCTMEKE 120


>gi|281178016|dbj|BAI54346.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 106

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 47/105 (44%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
                 +FD   + +VR +  ++ P +Y+V+LVND+YTPM+FVI VLQ FF  D E A  
Sbjct: 3   KTNDWLDFDQLAEEKVRDA--LKPPSMYKVILVNDDYTPMDFVIDVLQKFFSYDVERATQ 60

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +ML VH+QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 61  LMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105


>gi|123441829|ref|YP_001005813.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|238762120|ref|ZP_04623093.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
           kristensenii ATCC 33638]
 gi|238789631|ref|ZP_04633414.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
           frederiksenii ATCC 33641]
 gi|158512680|sp|A1JMC5|CLPS_YERE8 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|122088790|emb|CAL11596.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|238699848|gb|EEP92592.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
           kristensenii ATCC 33638]
 gi|238722184|gb|EEQ13841.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
           frederiksenii ATCC 33641]
          Length = 106

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 44/105 (41%), Positives = 65/105 (61%), Gaps = 2/105 (1%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
                  F++ +    +    ++ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A  
Sbjct: 3   KNNDWLNFEHLVKD--KQIEALKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQ 60

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +ML VH+QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 61  LMLNVHYQGKAICGVFTAEVAETKVAHVNQYARENEHPLLCTLEK 105


>gi|228311830|pdb|2WA8|A Chain A, Structural Basis Of N-End Rule Substrate Recognition In
           Escherichia Coli By The Clpap Adaptor Protein Clps - The
           Phe Peptide Structure
 gi|228311832|pdb|2WA8|C Chain C, Structural Basis Of N-End Rule Substrate Recognition In
           Escherichia Coli By The Clpap Adaptor Protein Clps - The
           Phe Peptide Structure
          Length = 107

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
                 +FD   + +VR +  ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A  
Sbjct: 3   KTNDWLDFDQLAEEKVRDA--LKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQ 60

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +ML VH+QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 61  LMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105


>gi|15800639|ref|NP_286653.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 EDL933]
 gi|15830221|ref|NP_308994.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. Sakai]
 gi|16128849|ref|NP_415402.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           str. K-12 substr. MG1655]
 gi|24112257|ref|NP_706767.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella flexneri
           2a str. 301]
 gi|26246907|ref|NP_752947.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           CFT073]
 gi|30062369|ref|NP_836540.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella flexneri
           2a str. 2457T]
 gi|74311440|ref|YP_309859.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella sonnei
           Ss046]
 gi|82543368|ref|YP_407315.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella boydii
           Sb227]
 gi|82777596|ref|YP_403945.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella
           dysenteriae Sd197]
 gi|89107732|ref|AP_001512.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           str. K-12 substr. W3110]
 gi|91209918|ref|YP_539904.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           UTI89]
 gi|110641082|ref|YP_668812.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           536]
 gi|110804883|ref|YP_688403.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella flexneri
           5 str. 8401]
 gi|117623059|ref|YP_851972.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           APEC O1]
 gi|157156472|ref|YP_001462078.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           E24377A]
 gi|157160404|ref|YP_001457722.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           HS]
 gi|168752462|ref|ZP_02777484.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4113]
 gi|168759050|ref|ZP_02784057.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4401]
 gi|168769874|ref|ZP_02794881.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4486]
 gi|168777871|ref|ZP_02802878.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4196]
 gi|168783792|ref|ZP_02808799.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4076]
 gi|168789133|ref|ZP_02814140.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC869]
 gi|168802712|ref|ZP_02827719.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC508]
 gi|170020716|ref|YP_001725670.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           ATCC 8739]
 gi|170080540|ref|YP_001729860.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           str. K-12 substr. DH10B]
 gi|170683903|ref|YP_001744326.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           SMS-3-5]
 gi|187732054|ref|YP_001880921.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella boydii
           CDC 3083-94]
 gi|188493236|ref|ZP_03000506.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           53638]
 gi|191167602|ref|ZP_03029413.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           B7A]
 gi|191172151|ref|ZP_03033695.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           F11]
 gi|193064650|ref|ZP_03045729.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           E22]
 gi|194428349|ref|ZP_03060890.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           B171]
 gi|194433088|ref|ZP_03065370.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella
           dysenteriae 1012]
 gi|194438739|ref|ZP_03070826.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           101-1]
 gi|195939544|ref|ZP_03084926.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4024]
 gi|208807982|ref|ZP_03250319.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4206]
 gi|208815975|ref|ZP_03257154.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4045]
 gi|208822627|ref|ZP_03262946.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4042]
 gi|209399503|ref|YP_002269555.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4115]
 gi|209918130|ref|YP_002292214.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           SE11]
 gi|217326428|ref|ZP_03442512.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. TW14588]
 gi|218553467|ref|YP_002386380.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           IAI1]
 gi|218557785|ref|YP_002390698.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           S88]
 gi|218688663|ref|YP_002396875.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           ED1a]
 gi|218694355|ref|YP_002402022.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           55989]
 gi|218700603|ref|YP_002408232.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           IAI39]
 gi|218704310|ref|YP_002411829.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           UMN026]
 gi|227884153|ref|ZP_04001958.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           83972]
 gi|238900140|ref|YP_002925936.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           BW2952]
 gi|253774089|ref|YP_003036920.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160996|ref|YP_003044104.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli B
           str. REL606]
 gi|254792082|ref|YP_003076919.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. TW14359]
 gi|256020998|ref|ZP_05434863.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella sp. D9]
 gi|256023492|ref|ZP_05437357.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia sp.
           4_1_40B]
 gi|260843132|ref|YP_003220910.1| regulatory protein ClpS for ClpA substrate specificity [Escherichia
           coli O103:H2 str. 12009]
 gi|260854173|ref|YP_003228064.1| regulatory protein ClpS for ClpA substrate specificity [Escherichia
           coli O26:H11 str. 11368]
 gi|260867054|ref|YP_003233456.1| regulatory protein ClpS for ClpA substrate specificity [Escherichia
           coli O111:H- str. 11128]
 gi|261225537|ref|ZP_05939818.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261258494|ref|ZP_05951027.1| regulatory protein ClpS for ClpA substrate specificity [Escherichia
           coli O157:H7 str. FRIK966]
 gi|291281885|ref|YP_003498703.1| ATP-dependent Clp protease adapter protein clpS [Escherichia coli
           O55:H7 str. CB9615]
 gi|293404189|ref|ZP_06648183.1| ClpS [Escherichia coli FVEC1412]
 gi|293409260|ref|ZP_06652836.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293414164|ref|ZP_06656813.1| ATP-dependent Clp protease adapter protein ClpS [Escherichia coli
           B185]
 gi|293433179|ref|ZP_06661607.1| ATP-dependent Clp protease adapter protein ClpS [Escherichia coli
           B088]
 gi|297516224|ref|ZP_06934610.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           OP50]
 gi|298379970|ref|ZP_06989575.1| ATP-dependent Clp protease adapter protein ClpS [Escherichia coli
           FVEC1302]
 gi|300817017|ref|ZP_07097236.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 107-1]
 gi|300823619|ref|ZP_07103746.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 119-7]
 gi|300895696|ref|ZP_07114292.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 198-1]
 gi|300902417|ref|ZP_07120399.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 84-1]
 gi|300921087|ref|ZP_07137471.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 115-1]
 gi|300922550|ref|ZP_07138651.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 182-1]
 gi|300928422|ref|ZP_07143955.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 187-1]
 gi|300935725|ref|ZP_07150693.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 21-1]
 gi|300950109|ref|ZP_07164055.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 116-1]
 gi|300954436|ref|ZP_07166888.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 175-1]
 gi|300978555|ref|ZP_07174308.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 45-1]
 gi|300991762|ref|ZP_07179625.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 200-1]
 gi|301020523|ref|ZP_07184607.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 69-1]
 gi|301024394|ref|ZP_07188081.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 196-1]
 gi|301051189|ref|ZP_07198019.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 185-1]
 gi|301305345|ref|ZP_07211440.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 124-1]
 gi|301328605|ref|ZP_07221666.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 78-1]
 gi|301646325|ref|ZP_07246213.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 146-1]
 gi|306812669|ref|ZP_07446862.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           NC101]
 gi|307137509|ref|ZP_07496865.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           H736]
 gi|307311731|ref|ZP_07591371.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           W]
 gi|309783999|ref|ZP_07678643.1| ATP-dependent Clp protease adaptor ClpS family protein [Shigella
           dysenteriae 1617]
 gi|309795322|ref|ZP_07689740.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 145-7]
 gi|312969050|ref|ZP_07783257.1| ATP-dependent Clp protease adaptor ClpS family protein [Escherichia
           coli 2362-75]
 gi|312971008|ref|ZP_07785187.1| ATP-dependent Clp protease adaptor ClpS family protein [Escherichia
           coli 1827-70]
 gi|331641402|ref|ZP_08342537.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           H736]
 gi|331646149|ref|ZP_08347252.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           M605]
 gi|331651900|ref|ZP_08352919.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           M718]
 gi|331656953|ref|ZP_08357915.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           TA206]
 gi|331662295|ref|ZP_08363218.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           TA143]
 gi|331667255|ref|ZP_08368120.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           TA271]
 gi|331676669|ref|ZP_08377365.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           H591]
 gi|331682390|ref|ZP_08383009.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           H299]
 gi|67462206|sp|P0A8Q6|CLPS_ECOLI RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|67462207|sp|P0A8Q7|CLPS_ECOL6 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|67462208|sp|P0A8Q8|CLPS_ECO57 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|67462209|sp|P0A8Q9|CLPS_SHIFL RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|122424438|sp|Q1RE41|CLPS_ECOUT RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|123049335|sp|Q0TJG8|CLPS_ECOL5 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|123343208|sp|Q0T8P4|CLPS_SHIF8 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|123560128|sp|Q323M1|CLPS_SHIBS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|123562126|sp|Q32E01|CLPS_SHIDS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|123617606|sp|Q3Z3N8|CLPS_SHISS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|158512538|sp|A1A9B8|CLPS_ECOK1 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|167008653|sp|A7ZJU9|CLPS_ECO24 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|167008654|sp|A7ZYI5|CLPS_ECOHS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|189082474|sp|B1IWP1|CLPS_ECOLC RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|226706563|sp|B7MHI7|CLPS_ECO45 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|226706564|sp|B7NM96|CLPS_ECO7I RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|226706565|sp|B7M809|CLPS_ECO8A RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|226706566|sp|B7NAN2|CLPS_ECOLU RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|226706567|sp|B1LKM9|CLPS_ECOSM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|229889820|sp|B1X822|CLPS_ECODH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238066650|sp|B5YSH7|CLPS_ECO5E RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238066651|sp|B6I8V2|CLPS_ECOSE RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|238691691|sp|B2TUJ7|CLPS_SHIB3 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|254763816|sp|B7LD74|CLPS_ECO55 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|254763817|sp|B7MRT8|CLPS_ECO81 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|259491246|sp|C4ZY53|CLPS_ECOBW RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|27573865|pdb|1MBU|C Chain C, Crystal Structure Analysis Of Clpsn Heterodimer
 gi|27573866|pdb|1MBU|D Chain D, Crystal Structure Analysis Of Clpsn Heterodimer
 gi|27573868|pdb|1MBV|B Chain B, Crystal Structure Analysis Of Clpsn Heterodimer Tetragonal
           Form
 gi|27573871|pdb|1MBX|C Chain C, Crystal Structure Analysis Of Clpsn With Transition Metal
           Ion Bound
 gi|27573872|pdb|1MBX|D Chain D, Crystal Structure Analysis Of Clpsn With Transition Metal
           Ion Bound
 gi|61679804|pdb|1R6O|C Chain C, Atp-Dependent Clp Protease Atp-Binding Subunit ClpaATP-
           Dependent Clp Protease Adaptor Protein Clps
 gi|61679805|pdb|1R6O|D Chain D, Atp-Dependent Clp Protease Atp-Binding Subunit ClpaATP-
           Dependent Clp Protease Adaptor Protein Clps
 gi|61679808|pdb|1R6Q|C Chain C, Clpns With Fragments
 gi|61679809|pdb|1R6Q|D Chain D, Clpns With Fragments
 gi|12513911|gb|AAG55263.1|AE005269_7 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|26107307|gb|AAN79490.1|AE016758_94 Protein yljA [Escherichia coli CFT073]
 gi|1787108|gb|AAC73968.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           str. K-12 substr. MG1655]
 gi|4062464|dbj|BAA35600.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           str. K12 substr. W3110]
 gi|13360426|dbj|BAB34390.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|24051108|gb|AAN42474.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30040614|gb|AAP16346.1| hypothetical protein S0881 [Shigella flexneri 2a str. 2457T]
 gi|73854917|gb|AAZ87624.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|81241744|gb|ABB62454.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|81244779|gb|ABB65487.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|91071492|gb|ABE06373.1| ATP-dependent Clp protease adaptor protein [Escherichia coli UTI89]
 gi|110342674|gb|ABG68911.1| hypothetical protein YljA [Escherichia coli 536]
 gi|110614431|gb|ABF03098.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|115512183|gb|ABJ00258.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|157066084|gb|ABV05339.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           HS]
 gi|157078502|gb|ABV18210.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           E24377A]
 gi|169755644|gb|ACA78343.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           ATCC 8739]
 gi|169888375|gb|ACB02082.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           str. K-12 substr. DH10B]
 gi|170521621|gb|ACB19799.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           SMS-3-5]
 gi|187429046|gb|ACD08320.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella boydii
           CDC 3083-94]
 gi|187766992|gb|EDU30836.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4196]
 gi|188013696|gb|EDU51818.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4113]
 gi|188488435|gb|EDU63538.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           53638]
 gi|188998902|gb|EDU67888.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4076]
 gi|189354287|gb|EDU72706.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4401]
 gi|189361171|gb|EDU79590.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4486]
 gi|189371156|gb|EDU89572.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC869]
 gi|189375364|gb|EDU93780.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC508]
 gi|190902363|gb|EDV62101.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           B7A]
 gi|190907678|gb|EDV67273.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           F11]
 gi|192927707|gb|EDV82322.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           E22]
 gi|194413564|gb|EDX29845.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           B171]
 gi|194418585|gb|EDX34672.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella
           dysenteriae 1012]
 gi|194422371|gb|EDX38371.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           101-1]
 gi|208727783|gb|EDZ77384.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4206]
 gi|208732623|gb|EDZ81311.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4045]
 gi|208738112|gb|EDZ85795.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4042]
 gi|209160903|gb|ACI38336.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC4115]
 gi|209775128|gb|ACI85876.1| hypothetical protein ECs0967 [Escherichia coli]
 gi|209775130|gb|ACI85877.1| hypothetical protein ECs0967 [Escherichia coli]
 gi|209775132|gb|ACI85878.1| hypothetical protein ECs0967 [Escherichia coli]
 gi|209775134|gb|ACI85879.1| hypothetical protein ECs0967 [Escherichia coli]
 gi|209775136|gb|ACI85880.1| hypothetical protein ECs0967 [Escherichia coli]
 gi|209911389|dbj|BAG76463.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|217322649|gb|EEC31073.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. TW14588]
 gi|218351087|emb|CAU96791.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           55989]
 gi|218360235|emb|CAQ97785.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           IAI1]
 gi|218364554|emb|CAR02238.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           S88]
 gi|218370589|emb|CAR18396.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           IAI39]
 gi|218426227|emb|CAR07052.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           ED1a]
 gi|218431407|emb|CAR12285.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           UMN026]
 gi|222032610|emb|CAP75349.1| ATP-dependent Clp protease adaptor protein clpS [Escherichia coli
           LF82]
 gi|227838905|gb|EEJ49371.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           83972]
 gi|238863441|gb|ACR65439.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           BW2952]
 gi|242376696|emb|CAQ31409.1| specificity factor for ClpA-ClpP chaperone-protease complex
           [Escherichia coli BL21(DE3)]
 gi|253325133|gb|ACT29735.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972897|gb|ACT38568.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli B
           str. REL606]
 gi|253977111|gb|ACT42781.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           BL21(DE3)]
 gi|254591482|gb|ACT70843.1| regulatory protein for ClpA substrate specificity [Escherichia coli
           O157:H7 str. TW14359]
 gi|257752822|dbj|BAI24324.1| regulatory protein ClpS for ClpA substrate specificity [Escherichia
           coli O26:H11 str. 11368]
 gi|257758279|dbj|BAI29776.1| regulatory protein ClpS for ClpA substrate specificity [Escherichia
           coli O103:H2 str. 12009]
 gi|257763410|dbj|BAI34905.1| regulatory protein ClpS for ClpA substrate specificity [Escherichia
           coli O111:H- str. 11128]
 gi|260449972|gb|ACX40394.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           DH1]
 gi|281600210|gb|ADA73194.1| ATP-dependent Clp protease adapter protein clpS [Shigella flexneri
           2002017]
 gi|284920735|emb|CBG33798.1| ATP-dependent Clp protease adaptor protein [Escherichia coli 042]
 gi|290761758|gb|ADD55719.1| ATP-dependent Clp protease adapter protein clpS [Escherichia coli
           O55:H7 str. CB9615]
 gi|291323998|gb|EFE63420.1| ATP-dependent Clp protease adapter protein ClpS [Escherichia coli
           B088]
 gi|291428775|gb|EFF01800.1| ClpS [Escherichia coli FVEC1412]
 gi|291434222|gb|EFF07195.1| ATP-dependent Clp protease adapter protein ClpS [Escherichia coli
           B185]
 gi|291469728|gb|EFF12212.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294493941|gb|ADE92697.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           IHE3034]
 gi|298279668|gb|EFI21176.1| ATP-dependent Clp protease adapter protein ClpS [Escherichia coli
           FVEC1302]
 gi|299880401|gb|EFI88612.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 196-1]
 gi|300297210|gb|EFJ53595.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 185-1]
 gi|300305516|gb|EFJ60036.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 200-1]
 gi|300318586|gb|EFJ68370.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 175-1]
 gi|300360365|gb|EFJ76235.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 198-1]
 gi|300398656|gb|EFJ82194.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 69-1]
 gi|300405449|gb|EFJ88987.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 84-1]
 gi|300409634|gb|EFJ93172.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 45-1]
 gi|300411938|gb|EFJ95248.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 115-1]
 gi|300421096|gb|EFK04407.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 182-1]
 gi|300450524|gb|EFK14144.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 116-1]
 gi|300459088|gb|EFK22581.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 21-1]
 gi|300463585|gb|EFK27078.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 187-1]
 gi|300523819|gb|EFK44888.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 119-7]
 gi|300530369|gb|EFK51431.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 107-1]
 gi|300839363|gb|EFK67123.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 124-1]
 gi|300844997|gb|EFK72757.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 78-1]
 gi|301075428|gb|EFK90234.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 146-1]
 gi|305853432|gb|EFM53871.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           NC101]
 gi|306908286|gb|EFN38785.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           W]
 gi|307552724|gb|ADN45499.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           ABU 83972]
 gi|307627693|gb|ADN71997.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           UM146]
 gi|308120972|gb|EFO58234.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 145-7]
 gi|308928142|gb|EFP73605.1| ATP-dependent Clp protease adaptor ClpS family protein [Shigella
           dysenteriae 1617]
 gi|309701158|emb|CBJ00458.1| ATP-dependent Clp protease adaptor protein [Escherichia coli ETEC
           H10407]
 gi|310336769|gb|EFQ01936.1| ATP-dependent Clp protease adaptor ClpS family protein [Escherichia
           coli 1827-70]
 gi|312286452|gb|EFR14365.1| ATP-dependent Clp protease adaptor ClpS family protein [Escherichia
           coli 2362-75]
 gi|312945399|gb|ADR26226.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|313650206|gb|EFS14618.1| ATP-dependent Clp protease adaptor ClpS family protein [Shigella
           flexneri 2a str. 2457T]
 gi|315060167|gb|ADT74494.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           W]
 gi|315135530|dbj|BAJ42689.1| ATP-dependent Clp protease adapter protein clpS [Escherichia coli
           DH1]
 gi|315257919|gb|EFU37887.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 85-1]
 gi|315287285|gb|EFU46696.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 110-3]
 gi|315291075|gb|EFU50438.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 153-1]
 gi|315296657|gb|EFU55952.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 16-3]
 gi|315619193|gb|EFU99772.1| ATP-dependent Clp protease adaptor ClpS family protein [Escherichia
           coli 3431]
 gi|320175322|gb|EFW50428.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella
           dysenteriae CDC 74-1112]
 gi|320180599|gb|EFW55528.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella boydii
           ATCC 9905]
 gi|320183180|gb|EFW58038.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella flexneri
           CDC 796-83]
 gi|320192633|gb|EFW67274.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. EC1212]
 gi|320196624|gb|EFW71247.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           WV_060327]
 gi|320202276|gb|EFW76847.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           EC4100B]
 gi|320637752|gb|EFX07544.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. G5101]
 gi|320642875|gb|EFX12076.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H- str. 493-89]
 gi|320648332|gb|EFX16987.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H- str. H 2687]
 gi|320654170|gb|EFX22238.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320659794|gb|EFX27350.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320664264|gb|EFX31415.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323155745|gb|EFZ41914.1| ATP-dependent Clp protease adaptor ClpS family protein [Escherichia
           coli EPECa14]
 gi|323159506|gb|EFZ45486.1| ATP-dependent Clp protease adaptor protein ClpS family protein
           [Escherichia coli E128010]
 gi|323165818|gb|EFZ51604.1| ATP-dependent Clp protease adaptor ClpS family protein [Shigella
           sonnei 53G]
 gi|323172148|gb|EFZ57786.1| ATP-dependent Clp protease adaptor protein ClpS family protein
           [Escherichia coli LT-68]
 gi|323175497|gb|EFZ61092.1| ATP-dependent Clp protease adaptor protein ClpS family protein
           [Escherichia coli 1180]
 gi|323185154|gb|EFZ70519.1| ATP-dependent Clp protease adaptor protein ClpS family protein
           [Escherichia coli 1357]
 gi|323379276|gb|ADX51544.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           KO11]
 gi|323937988|gb|EGB34250.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           E1520]
 gi|323942798|gb|EGB38963.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           E482]
 gi|323947161|gb|EGB43171.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           H120]
 gi|323953415|gb|EGB49281.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           H252]
 gi|323958183|gb|EGB53892.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           H263]
 gi|323962994|gb|EGB58566.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           H489]
 gi|323967317|gb|EGB62740.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           M863]
 gi|323969619|gb|EGB64906.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           TA007]
 gi|323976732|gb|EGB71820.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           TW10509]
 gi|324009833|gb|EGB79052.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 57-2]
 gi|324013007|gb|EGB82226.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 60-1]
 gi|324019029|gb|EGB88248.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           MS 117-3]
 gi|324116095|gb|EGC10019.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           E1167]
 gi|326338224|gb|EGD62053.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. 1125]
 gi|326346201|gb|EGD69939.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           O157:H7 str. 1044]
 gi|327253669|gb|EGE65298.1| ATP-dependent Clp protease adaptor protein ClpS family protein
           [Escherichia coli STEC_7v]
 gi|330910663|gb|EGH39173.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           AA86]
 gi|331038200|gb|EGI10420.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           H736]
 gi|331044901|gb|EGI17028.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           M605]
 gi|331050178|gb|EGI22236.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           M718]
 gi|331055201|gb|EGI27210.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           TA206]
 gi|331060717|gb|EGI32681.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           TA143]
 gi|331065611|gb|EGI37504.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           TA271]
 gi|331075358|gb|EGI46656.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           H591]
 gi|331080021|gb|EGI51200.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
           H299]
 gi|332091077|gb|EGI96167.1| ATP-dependent Clp protease adaptor protein ClpS family protein
           [Shigella dysenteriae 155-74]
 gi|332097186|gb|EGJ02169.1| ATP-dependent Clp protease adaptor protein ClpS family protein
           [Shigella boydii 3594-74]
 gi|332104576|gb|EGJ07922.1| regulatory protein for ClpA substrate specificity [Shigella sp. D9]
          Length = 106

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
                 +FD   + +VR +  ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A  
Sbjct: 3   KTNDWLDFDQLAEEKVRDA--LKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQ 60

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +ML VH+QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 61  LMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105


>gi|166712083|ref|ZP_02243290.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas oryzae
           pv. oryzicola BLS256]
          Length = 112

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 48/87 (55%), Positives = 61/87 (70%)

Query: 51  SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
             +V  P  Y+VLL+ND+YTPM+FV+ VLQ FF  + E A  IML VH +G G CGVY+ 
Sbjct: 25  KPEVAPPPRYQVLLLNDDYTPMDFVVTVLQQFFNLNLEQATQIMLHVHTRGRGVCGVYSR 84

Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           E+AE KV QV  +SR +Q+PL C MEQ
Sbjct: 85  EVAESKVAQVNEFSRMNQHPLLCTMEQ 111


>gi|329894886|ref|ZP_08270685.1| ATP-dependent Clp protease adaptor protein ClpS [gamma
           proteobacterium IMCC3088]
 gi|328922615|gb|EGG29950.1| ATP-dependent Clp protease adaptor protein ClpS [gamma
           proteobacterium IMCC3088]
          Length = 113

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 1/107 (0%)

Query: 32  MNKKGIAEFDNCLDSEVR-FSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
           M+++   + D+     V      ++ P LY+V+L+ND+YTPMEFV+ VL+ FF  + E A
Sbjct: 1   MSEQHPDQHDDGTGLAVAPAKPALKKPPLYKVVLMNDDYTPMEFVVLVLERFFRMNREKA 60

Query: 91  KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             IML VH QG G CG+Y  ++AE K  +V  +SR++Q+PL C +E 
Sbjct: 61  TQIMLAVHTQGKGVCGIYPRDVAETKAYEVNEFSRENQHPLLCEVEP 107


>gi|251789967|ref|YP_003004688.1| ATP-dependent Clp protease adaptor protein ClpS [Dickeya zeae
           Ech1591]
 gi|247538588|gb|ACT07209.1| ATP-dependent Clp protease adaptor protein ClpS [Dickeya zeae
           Ech1591]
          Length = 106

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 45/98 (45%), Positives = 66/98 (67%)

Query: 40  FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
                 ++  ++  ++ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A  +ML VH+
Sbjct: 8   PQTDDLTKEHYTEALQPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQLMLTVHY 67

Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           QG   CGVY+ E+AE KV QV  Y+R++++PL C +E+
Sbjct: 68  QGKAICGVYSAEVAETKVEQVNRYARENEHPLLCTLEK 105


>gi|119384493|ref|YP_915549.1| ATP-dependent Clp protease adaptor protein ClpS [Paracoccus
           denitrificans PD1222]
 gi|119374260|gb|ABL69853.1| ATP-dependent Clp protease adaptor protein ClpS [Paracoccus
           denitrificans PD1222]
          Length = 105

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 49/106 (46%), Positives = 72/106 (67%), Gaps = 3/106 (2%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
           N+ G  E    ++  V+   + + P +Y+VLL+ND++TPMEFV+HVL+  F  +H  A  
Sbjct: 3   NRPGDRE---EVELGVKTRPRTQRPPMYKVLLLNDDFTPMEFVVHVLERLFNMNHAQAIE 59

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
           IML VH +GI   GV+++EIAE KV QVM  +R+ Q+PLQC ME++
Sbjct: 60  IMLTVHRKGIAVVGVFSHEIAETKVAQVMELARRQQHPLQCTMEKE 105


>gi|319408390|emb|CBI82045.1| Clp protease adaptor protein [Bartonella schoenbuchensis R1]
          Length = 119

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 55/114 (48%), Positives = 78/114 (68%), Gaps = 2/114 (1%)

Query: 23  SFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF 82
           +   M + +       ++D  +  +V+   K + PKLYRVLL+ND+YTPM+FV+ +L++F
Sbjct: 8   ALHTMQNEKGKGWSEDKYDTIVIPQVK--PKFQKPKLYRVLLLNDDYTPMDFVVFILESF 65

Query: 83  FYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
           F K  E    IML VH  G+GECGVY YE+AEMKV QVM  +RQ+++PLQC+ME
Sbjct: 66  FKKSFEETTRIMLNVHQNGVGECGVYTYEVAEMKVVQVMECARQNEHPLQCVME 119


>gi|91788801|ref|YP_549753.1| ATP-dependent Clp protease adaptor protein ClpS [Polaromonas sp.
           JS666]
 gi|91698026|gb|ABE44855.1| ATP-dependent Clp protease adaptor protein ClpS [Polaromonas sp.
           JS666]
          Length = 125

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 46/90 (51%), Positives = 66/90 (73%)

Query: 48  VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
            R   K + P++Y+V+L+ND+YTPMEFV+ +LQ FF KDHETA  IMLK+H  G G CGV
Sbjct: 34  ERRPQKTKPPQMYQVVLLNDDYTPMEFVVVILQEFFNKDHETATQIMLKIHLDGKGVCGV 93

Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           ++ ++A  KV+QV   +R++ +PLQC+ E 
Sbjct: 94  FSKDVAATKVDQVTEAARKNGHPLQCVSEP 123


>gi|296135869|ref|YP_003643111.1| ATP-dependent Clp protease adaptor protein ClpS [Thiomonas
           intermedia K12]
 gi|294340063|emb|CAZ88431.1| ATP-dependent Clp protease adaptor protein clpS [Thiomonas sp. 3As]
 gi|295795991|gb|ADG30781.1| ATP-dependent Clp protease adaptor protein ClpS [Thiomonas
           intermedia K12]
          Length = 108

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 49/96 (51%), Positives = 67/96 (69%)

Query: 41  DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
           D       R + +++ P +Y+V+L+NDN+TPMEFV+ V+Q++F KD ETA  IMLKVH  
Sbjct: 11  DGGAVVVERQTLRLKPPAMYQVILLNDNFTPMEFVVVVIQHYFNKDRETATQIMLKVHRD 70

Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
           G G CGVY  +IA  KV QV+  +RQ  +PLQC+ME
Sbjct: 71  GRGVCGVYTRDIAATKVEQVIGAARQAGHPLQCVME 106


>gi|319787138|ref|YP_004146613.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465650|gb|ADV27382.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 108

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 48/107 (44%), Positives = 68/107 (63%), Gaps = 1/107 (0%)

Query: 32  MNKKGIAEFDNCLDSEVRF-SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
           M+     E D+   + V     ++  P +Y+V+L+ND+YTPM+FV+ VLQ FF  D E A
Sbjct: 1   MSSTPRHEHDHEHGTLVDPGRPEIAPPPMYQVILLNDDYTPMDFVVAVLQQFFGLDLERA 60

Query: 91  KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             +ML VH +G G CGV+  E+AE KV QV  +SR +Q+PL C ME+
Sbjct: 61  TQVMLHVHTRGRGVCGVFTREVAESKVAQVNEFSRMNQHPLLCTMEK 107


>gi|237732131|ref|ZP_04562612.1| ATP-dependent Clp protease adapter protein clpS [Citrobacter sp.
           30_2]
 gi|226907670|gb|EEH93588.1| ATP-dependent Clp protease adapter protein clpS [Citrobacter sp.
           30_2]
          Length = 106

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 48/105 (45%), Positives = 68/105 (64%), Gaps = 2/105 (1%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
                 +FD  L +E +    ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A  
Sbjct: 3   KTNDWLDFD--LLAEDKLRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQ 60

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +ML VH+QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 61  LMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105


>gi|188534289|ref|YP_001908086.1| ATP-dependent Clp protease adaptor protein ClpS [Erwinia
           tasmaniensis Et1/99]
 gi|238689683|sp|B2VC66|CLPS_ERWT9 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gi|188029331|emb|CAO97208.1| ATP-dependent Clp protease adaptor protein [Erwinia tasmaniensis
           Et1/99]
          Length = 106

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 46/105 (43%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
                  F+   D +VR   +++ P +Y+V+L ND++TPMEFVI VLQ FF  D E A  
Sbjct: 3   KTNDWLNFEQLADDKVR--EELKPPSMYKVILNNDDFTPMEFVIDVLQKFFSYDIERATQ 60

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +ML VH+QG   CGV+  E+AE KV  V  Y+R +++PL C +E+
Sbjct: 61  LMLTVHYQGKAICGVFTAEVAETKVAHVNKYARDNEHPLLCTLEK 105


>gi|257095587|ref|YP_003169228.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257048111|gb|ACV37299.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 102

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 45/86 (52%), Positives = 64/86 (74%)

Query: 52  SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
           ++++ P LY+VLL+ND++TPM+FVI VLQ FF  D E A  IMLKVH +G G CGV+  +
Sbjct: 16  TQLKPPPLYKVLLLNDDFTPMDFVIVVLQRFFGMDREHATRIMLKVHTEGRGVCGVFPRD 75

Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +A  KV QV  ++R +Q+PL C+ME+
Sbjct: 76  VAATKVEQVTTFARSNQHPLACVMEE 101


>gi|304397051|ref|ZP_07378930.1| ATP-dependent Clp protease adaptor protein ClpS [Pantoea sp. aB]
 gi|304355200|gb|EFM19568.1| ATP-dependent Clp protease adaptor protein ClpS [Pantoea sp. aB]
          Length = 106

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 47/107 (43%), Positives = 68/107 (63%), Gaps = 2/107 (1%)

Query: 31  RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
             N      F++  + +VR    ++ P +Y+V+L ND+YTPMEFVI V+Q FF  D E A
Sbjct: 1   MANTNDWLNFEHLAEDKVREG--LKPPSMYKVILNNDDYTPMEFVIDVVQKFFSYDVERA 58

Query: 91  KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
             +MLKVH+ G   CGV+  E+AE K  QV NY+R++ +PL C +E+
Sbjct: 59  TQLMLKVHYHGKAICGVFTAEVAETKAAQVNNYARENHHPLLCTLEK 105


>gi|119944513|ref|YP_942193.1| ATP-dependent Clp protease adaptor protein ClpS [Psychromonas
           ingrahamii 37]
 gi|119863117|gb|ABM02594.1| ATP-dependent Clp protease adaptor protein ClpS [Psychromonas
           ingrahamii 37]
          Length = 108

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 52/107 (48%), Positives = 76/107 (71%)

Query: 32  MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
           M+ K   +  N  D+  +  +K+R P +Y VLL ND+YTPM+FVI VLQ FF  D++ A 
Sbjct: 1   MSDKKAPKTVNKSDTIEKVETKLRPPSMYNVLLHNDDYTPMDFVIDVLQQFFRLDNQKAT 60

Query: 92  CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
            +ML VH++ +G CG ++ EIAE KV QVMNY+RQ+++PL+C ME++
Sbjct: 61  EVMLNVHYKEVGICGTFSAEIAETKVMQVMNYARQNEHPLRCSMEKE 107


>gi|332162228|ref|YP_004298805.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318606291|emb|CBY27789.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325666458|gb|ADZ43102.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330860566|emb|CBX70865.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
           enterocolitica W22703]
          Length = 115

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 44/105 (41%), Positives = 65/105 (61%), Gaps = 2/105 (1%)

Query: 33  NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
                  F++ +    +    ++ P +Y+V+L ND+YTPMEFVI VLQ FF  D E A  
Sbjct: 12  KNNDWLNFEHLVKD--KQIEALKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQ 69

Query: 93  IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
           +ML VH+QG   CGV+  E+AE KV  V  Y+R++++PL C +E+
Sbjct: 70  LMLNVHYQGKAICGVFTAEVAETKVAHVNQYARENEHPLLCTLEK 114


>gi|19307