RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780164|ref|YP_003064577.1| ATP-dependent Clp protease
adaptor protein ClpS [Candidatus Liberibacter asiaticus str. psy62]
(138 letters)
>gnl|CDD|178809 PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS;
Reviewed.
Length = 100
Score = 111 bits (279), Expect = 8e-26
Identities = 44/88 (50%), Positives = 57/88 (64%), Gaps = 6/88 (6%)
Query: 51 SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
K++ P +Y+VLL ND+YTPMEFV++VLQ FF D E A IML+VH++G GV
Sbjct: 19 EPKLKPPPMYKVLLHNDDYTPMEFVVYVLQKFFGYDRERATQIMLEVHNEGKAVVGVCTR 78
Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E+AE KV QV HQ+ L C ME+
Sbjct: 79 EVAETKVEQV------HQHGLLCTMEKD 100
>gnl|CDD|183845 PRK13019, clpS, ATP-dependent Clp protease adaptor; Reviewed.
Length = 94
Score = 56.9 bits (138), Expect = 2e-09
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIH-VLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
K+ LY+V+++ND++ E V++ +L+ + A +M+ H +G V E
Sbjct: 15 KLERYPLYKVIVLNDDFNTFEHVVNCLLKAIPGMSEDRAWRLMITAHKEGSAVVWVGPLE 74
Query: 112 IAEMKVNQ 119
AE+ Q
Sbjct: 75 QAELYHQQ 82
>gnl|CDD|178361 PLN02761, PLN02761, lipase class 3 family protein.
Length = 527
Score = 26.2 bits (57), Expect = 2.7
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 85 KDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQV 120
+ HE + I + H G V AY+IAE+ +N V
Sbjct: 290 EGHEIS--ITVTGHSLGASLALVSAYDIAELNLNHV 323
>gnl|CDD|182309 PRK10213, nepI, ribonucleoside transporter; Reviewed.
Length = 394
Score = 26.0 bits (57), Expect = 2.9
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 8 SMYHRVKRDGILALMSFIFMA 28
+ + ++R G++A M IFM+
Sbjct: 208 NTFRLLQRPGVMAGMIAIFMS 228
>gnl|CDD|131843 TIGR02796, tolQ, TolQ protein. TolQ is one of the essential
components of the Tol-Pal system. Together with TolR,
it harnesses protonmotive force to energize TolA, which
spans the periplasm to reach the complex of TolB and
Pal at the outer member. The tol-pal system proves to
be important for maintaining outer membrane integrity.
Gene pairs similar to the TolQ and TolR gene pair often
number several per genome, but this model describes
specificially TolQ per se, as found in tol-pal operons.
A close homolog, excluded from this model, is ExbB of
the ExbB/ExbD/TonB protein complex, which powers
transport of siderophores and vitamin B12 across the
bacterial outer membrane. The Tol-Pal system is
exploited by colicin and filamentous phage DNA to enter
the cell. It is also implicated in pathogenesis in
several bacterial species.
Length = 215
Score = 25.7 bits (57), Expect = 4.8
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 15/64 (23%)
Query: 18 ILALMSFI---FMAD-----SRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNY 69
IL L S I + R ++ EF++ RF S + KLY L N
Sbjct: 19 ILLLASIISWAIIFQKFFIFRRARRE-AEEFED------RFWSGGDLEKLYNSLSNNKPT 71
Query: 70 TPME 73
+ +E
Sbjct: 72 SGLE 75
>gnl|CDD|185540 PTZ00288, PTZ00288, glucokinase 1; Provisional.
Length = 405
Score = 25.3 bits (55), Expect = 5.5
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 8/40 (20%)
Query: 61 RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
V+L+ DN V +FF+ + E K + ++
Sbjct: 326 TVVLMGDNI--------VYNSFFFDNPENVKQLQARITEH 357
>gnl|CDD|172382 PRK13861, PRK13861, type IV secretion system protein VirB9;
Provisional.
Length = 292
Score = 24.8 bits (54), Expect = 6.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRV 62
FDN + RF VR+P +Y +
Sbjct: 203 FDNGFSTVFRFPGNVRIPSIYTI 225
>gnl|CDD|178625 PLN03076, PLN03076, ARF guanine nucleotide exchange factor (ARF-GEF);
Provisional.
Length = 1780
Score = 24.8 bits (54), Expect = 7.0
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 22 MSFIFMADSRMNKKGIAEFDNCL----DSEVRFSSKVRVPKLYRVL-LVNDNYTPMEFV- 75
M+ IF ++N + I +F L E+R S RV L +++ + + N + V
Sbjct: 1072 MNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVW 1131
Query: 76 ---IHVLQNFF 83
HVL +FF
Sbjct: 1132 SSIWHVLSDFF 1142
>gnl|CDD|162112 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam
antibiotics, the antitumor agent, bestatin, and various
protease inhibitors).
Length = 654
Score = 25.1 bits (55), Expect = 7.1
Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 17 GILALMSFI-FMADSRMNKK 35
IL +++ I FMA S+M KK
Sbjct: 168 AILMILALIVFMAGSKMYKK 187
>gnl|CDD|184043 PRK13417, PRK13417, F0F1 ATP synthase subunit A; Provisional.
Length = 352
Score = 24.5 bits (53), Expect = 9.1
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 18 ILALMSFIFMADS 30
ILALM FIF S
Sbjct: 296 ILALMGFIFQFQS 308
>gnl|CDD|162465 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase,
flippase. This model describes the P-type ATPase
responsible for transporting phospholipids from one
leaflet of bilayer membranes to the other. These ATPases
are found only in eukaryotes.
Length = 1057
Score = 24.6 bits (54), Expect = 9.3
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFF 83
D +V S +R P+LYR ++ F +L +
Sbjct: 885 VFDQDVSASLSLRYPQLYREGQKGQGFSTKTFWGWMLDGIY 925
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.327 0.139 0.421
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,162,383
Number of extensions: 120146
Number of successful extensions: 227
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 13
Length of query: 138
Length of database: 5,994,473
Length adjustment: 84
Effective length of query: 54
Effective length of database: 4,179,401
Effective search space: 225687654
Effective search space used: 225687654
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (23.7 bits)