RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780164|ref|YP_003064577.1| ATP-dependent Clp protease
adaptor protein ClpS [Candidatus Liberibacter asiaticus str. psy62]
         (138 letters)



>2w9r_A YLJA, ATP-dependent CLP protease adapter protein CLPS;
           chaperone, adaptor protein, DNA condensation, iron,
           CLPS, CLPA, cytoplasm, N-END RULE; HET: DNA; 1.70A
           {Escherichia coli} PDB: 2wa9_A 1mbx_C* 1mbv_B 1mbu_C*
           1r6o_C* 1r6q_C* 2wa8_A 1mg9_A* 1lzw_A* (A:24-108)
          Length = 85

 Score =  111 bits (280), Expect = 3e-26
 Identities = 44/81 (54%), Positives = 59/81 (72%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           P +Y+V+LVND+YTPMEFVI VLQ FF  D E A  +ML VH+QG   CGV+  E+AE K
Sbjct: 2   PSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETK 61

Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
           V  V  Y+R++++PL C +E+
Sbjct: 62  VAMVNKYARENEHPLLCTLEK 82


>3dnj_A ATP-dependent CLP protease adapter protein CLPS; adaptor,
           protein-peptide complex, peptide binding protein; 1.15A
           {Caulobacter vibrioides} PDB: 3g19_A 3gq0_A 3gq1_A
           3gw1_A 3g1b_A (A:)
          Length = 85

 Score =  109 bits (275), Expect = 1e-25
 Identities = 50/81 (61%), Positives = 64/81 (79%)

Query: 57  PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
           P LYRVL++ND+YTPMEFV++VL+ FF K  E A  IML VH  G+G CGVY YE+AE K
Sbjct: 4   PSLYRVLILNDDYTPMEFVVYVLERFFNKSREDATRIMLHVHQNGVGVCGVYTYEVAETK 63

Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
           V QV++ +R+HQ+PLQC ME+
Sbjct: 64  VAQVIDSARRHQHPLQCTMEK 84


>2j5l_A Apical membrane antigen 1; malaria vaccine candidate, apical
           membrane antigen 1, hypothetical protein, immunoglobulin
           domain; 2.9A {Plasmodium falciparum} (A:)
          Length = 581

 Score = 24.9 bits (54), Expect = 3.7
 Identities = 7/33 (21%), Positives = 11/33 (33%)

Query: 68  NYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
           N  P        +     D+   KC +L +  Q
Sbjct: 191 NMNPDNDKNSNYKYPAVYDYNDKKCHILYIAAQ 223


>1uhv_A Beta-xylosidase; family 39 glycoside hydrolase, xylan,
           xylose, covalent glycosyl-enzyme intermediate; 2.10A
           {Thermoanaerobacterium saccharolyticum}
           (A:1-13,A:287-500)
          Length = 227

 Score = 23.7 bits (51), Expect = 9.0
 Identities = 13/94 (13%), Positives = 23/94 (24%), Gaps = 20/94 (21%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQ-----------NFFYKDHETAK--------CI 93
           KVRVP       V+D      ++  +L              F    E             
Sbjct: 3   KVRVPDFSDKKPVHDTPFNAAYIARILSEGGDYVDSFSYWTFSDVFEERDVPRSQFHGGF 62

Query: 94  MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQH 127
            L      I +   Y ++       +++      
Sbjct: 63  GLV-ALNMIPKPTFYTFKFFNAMGEEMLYRDEHM 95


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.327    0.139    0.421 

Gapped
Lambda     K      H
   0.267   0.0608    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,052,737
Number of extensions: 42893
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 9
Length of query: 138
Length of database: 4,956,049
Length adjustment: 80
Effective length of query: 58
Effective length of database: 2,251,649
Effective search space: 130595642
Effective search space used: 130595642
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.3 bits)